Hickey
BigY2: 710588MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 710588 |
---|---|---|---|---|---|---|---|---|
13451271-C-T | 11295595-C-T | A* | ||||||
21562790-C-A | 19400904-C-A | BY411 | M2268 Y539 S23267 Z4948 ZS12558 | Y | Y | + | ||
23258741-A-G | 21096855-A-G | F3423 | Y | Y | + | |||
8216811-T-C | 8348770-T-C | Y | Y | + | ||||
14203058-C-A | 12082352-C-A | Y | Y | + | ||||
14847079-T-C | 12735145-T-C | Y | Y | + | ||||
14954174-C-T | 12842248-C-T | Y | Y | + | ||||
16627697-TG-T | 14515817-TG-T | + | ||||||
18204803-T-C | 16092923-T-C | Y | Y | + | ||||
21513283-A-G | 19351397-A-G | Y | Y | + | ||||
6391585-C-G | 6523544-C-G | * | ||||||
13695129-A-T | 11539453-A-T | * | ||||||
22277135-G-C | 20115249-G-C | DYZ19 | * | |||||
20510961-ATTT-A | 18349075-ATTT-A | P5_Dst | 32×T | ** | ||||
4120195-AACAC-A | 4252154-AACAC-A | 21×AC | ** | |||||
8742738-AATG-A | 8874697-AATG-A | 8×ATG | ** | |||||
17718401-A-C | 15606521-A-C | ** | ||||||
3877046-C-A | 4009005-C-A | ** | ||||||
9040206-TA-T | 9202597-TA-T | ** | ||||||
9416729-TTG-T | 9579120-TTG-T | ** | ||||||
13363155-AC-A | 11207479-AC-A | ** | ||||||
18060276-ATGTG-A | 15948396-ATGTG-A | ** | ||||||
13857368-A-C | 11736662-A-C | ** | ||||||
58988977-C-G | 56842830-C-G | ** | ||||||
22880745-C-A | 20718859-C-A | ** | ||||||
15370836-C-A | 13258956-C-A | ** | ||||||
22809836-CT-C | 20647950-CT-C | ** | ||||||
17346142-C-A | 15234262-C-A | 18×T | ** | |||||
10892121-T-TATTCCATTCC | ** | |||||||
13323494-CAAAAA-C | 11167818-CAAAAA-C | 24×A | ** | |||||
13329526-G-T | 11173850-G-T | ** | ||||||
11657425-C-A | ** | |||||||
13324048-C-A | 11168372-C-A | ** | ||||||
10892085-T-C | ** | |||||||
19187438-G-T | 17075558-G-T | ** | ||||||
19318178-C-A | 17206298-C-A | 28×T | ** | |||||
13588225-T-TA | 11432549-T-TA | ** | ||||||
13718514-T-G | 11562838-T-G | ** | ||||||
10050283-C-A | 10212674-C-A | ** | ||||||
18465469-G-GA | 16353589-G-GA | P6_Dst | 26×A | ** | ||||
10971963-A-T | ** | |||||||
10653502-C-T | ** | |||||||
27966857-G-T | 25820710-G-T | P1_Y2 | 21×TA | ** | ||||
28022509-G-T | 25876362-G-T | P1_Y2 | ** | |||||
13466070-C-T | 11310394-C-T | ** | ||||||
13466092-C-A | 11310416-C-A | ** | ||||||
11025175-C-T | ** | |||||||
7134211-C-A | 7266170-C-A | ** | ||||||
5560098-C-A | 5692057-C-A | ** | ||||||
10760435-T-C | ** | |||||||
4443013-C-A | 4574972-C-A | ** | ||||||
11017693-T-A | ** | |||||||
11017699-G-C | ** | |||||||
11017710-C-T | ** | |||||||
11017714-C-G | ** | |||||||
14351166-C-A | 12230461-C-A | ** | ||||||
10988602-C-A | ** | |||||||
10988614-C-A | ** | |||||||
10988619-C-A | ** | |||||||
10793644-T-C | ** | |||||||
10793690-A-C | ** | |||||||
19059747-CTTTTT-C | 16947867-CTTTTT-C | 25×T | ** | |||||
26010323-T-A | 23864176-T-A | P1_Y1 | ** | |||||
10804492-G-T | ** | |||||||
25466543-G-T | 23320396-G-T | P2_r2 | ** | |||||
10754982-C-A | ** | |||||||
10997722-TC-T | ** | |||||||
27784234-G-T | 25638087-G-T | P1_Y2 | ** | |||||
18614437-C-CA | 16502557-C-CA | 9×A | ** | |||||
22090032-C-A | 19928146-C-A | ** | ||||||
8674126-C-A | 8806085-C-A | ** | ||||||
10801007-T-C | ** | |||||||
6808134-CAAAA-C | 6940093-CAAAA-C | 22×A | ** | |||||
28798297-GGGTGT-G | 26652150-GGGTGT-G | ** | ||||||
10892556-TC-T | ** | |||||||
10892566-TC-T | ** | |||||||
14743876-C-A | 12631945-C-A | ** | ||||||
56842897-T-G | ** | |||||||
16451698-C-A | 14339818-C-A | ** | ||||||
16588346-C-A | 14476466-C-A | ** | ||||||
11017704-T-A | ** | |||||||
11017724-C-A | ** | |||||||
6934787-G-T | 7066746-G-T | ** | ||||||
10792563-C-T | ** | |||||||
28656860-C-A | 26510713-C-A | ** | ||||||
11010412-T-A | ** | |||||||
11025157-C-T | ** | |||||||
5627683-C-A | 5759642-C-A | ** | ||||||
13996294-C-A | 11875588-C-A | ** | ||||||
56849779-G-T | ** | |||||||
10989108-ACACCAC-A | ** | |||||||
19794880-A-T | 17683000-A-T | P5_Prx | ** | |||||
10793667-C-CT | ** | |||||||
6790224-C-A | 6922183-C-A | ** | ||||||
10800972-T-C | ** | |||||||
10800975-C-CACTCT | ** | |||||||
26152124-T-G | 24005977-T-G | P1_Y1 | ** | |||||
7332891-C-A | 7464850-C-A | ** | ||||||
13311842-C-A | 11156166-C-A | ** | ||||||
5969919-C-A | 6101878-C-A | ** | ||||||
10906900-A-C | ** | |||||||
5021946-C-A | 5153905-C-A | ** | ||||||
23345836-C-T | 21183950-C-T | ** | ||||||
16018269-C-A | 13906389-C-A | ** | ||||||
10849665-C-CTCCAT | ** | |||||||
10661351-C-A | ** | |||||||
4888649-C-A | 5020608-C-A | ** | ||||||
10664809-C-CCTTGT | ** | |||||||
17270577-C-A | 15158697-C-A | ** | ||||||
10667084-C-A | ** | |||||||
10788004-C-T | ** | |||||||
17465041-C-A | 15353161-C-A | ** | ||||||
10662773-G-T | ** | |||||||
13542329-C-A | 11386653-C-A | ** | ||||||
10892554-A-AC | ** | |||||||
10892569-A-AT | ** | |||||||
21752418-G-T | ** | |||||||
16271908-C-A | 14160028-C-A | ** | ||||||
16598802-C-A | 14486922-C-A | ** | ||||||
3849122-C-A | 3981081-C-A | ** | ||||||
17137007-C-A | 15025127-C-A | ** | ||||||
3851642-C-CT | 3983601-C-CT | 10×T | ** | |||||
11662893-G-T | ** | |||||||
26010268-G-T | 23864121-G-T | P1_Y1 | 21×TA | ** | ||||
15557124-AATATATATATATAT-A | 13445244-AATATATATATATAT-A | 19×AT | ** | |||||
16062171-C-A | 13950291-C-A | ** | ||||||
23317649-C-A | 21155763-C-A | 37×T | ** | |||||
10662952-C-A | ** | |||||||
21244956-C-A | 19083070-C-A | ** | ||||||
19071227-C-A | 16959347-C-A | ** | ||||||
28485851-C-A | 26339704-C-A | ** | ||||||
4417427-C-A | 4549386-C-A | ** | ||||||
11010397-T-C | ** | |||||||
25719218-T-A | 23573071-T-A | P1_b3 | ** | |||||
10748325-C-A | ** | |||||||
4626950-C-A | 4758909-C-A | ** | ||||||
56842891-G-C | ** | |||||||
56842892-G-A | ** | |||||||
56842916-G-A | ** | |||||||
56842923-A-T | ** | |||||||
10988618-T-G | ** | |||||||
28461622-C-A | 26315475-C-A | ** | ||||||
14965395-C-A | 12853470-C-A | ** | ||||||
8865905-C-A | 8997864-C-A | ** | ||||||
21127524-C-A | 18965638-C-A | ** | ||||||
13988973-C-A | 11868267-C-A | ** | ||||||
5292837-C-A | 5424796-C-A | ** | ||||||
10878409-C-A | ** | |||||||
15971198-G-T | 13859318-G-T | ** | ||||||
9750126-G-GT | 9912517-G-GT | ** | ||||||
6911351-C-A | 7043310-C-A | ** | ||||||
7162293-C-A | 7294252-C-A | ** | ||||||
10932810-C-A | ** | |||||||
5935429-C-A | 6067388-C-A | ** | ||||||
17222609-C-A | 15110729-C-A | ** | ||||||
10661281-C-A | ** | |||||||
14097942-G-T | 11977236-G-T | ** | ||||||
10776192-C-G | ** | |||||||
10776204-C-G | ** | |||||||
10967560-T-C | ** | |||||||
10967562-C-G | ** | |||||||
13643503-C-A | 11487827-C-A | ** | ||||||
11006089-T-C | ** | |||||||
26184249-A-AC | 24038102-A-AC | P1_Y1 | ** | |||||
10821791-C-A | ** | |||||||
56842908-C-A | ** | |||||||
19074972-C-A | 16963092-C-A | ** | ||||||
2806195-A-T | 2938154-A-T | 36×T | ** | |||||
15239608-C-A | 13127694-C-A | ** | ||||||
24631271-TG-T | 22485124-TG-T | P3_t2 | ** | |||||
8811246-A-C | 8943205-A-C | ** | ||||||
6028458-C-G | 6160417-C-G | ** | ||||||
10646611-C-A | ** | |||||||
6429616-T-G | 6561575-T-G | ** | ||||||
19794915-C-A | 17683035-C-A | P5_Prx | ** | |||||
7166947-C-A | 7298906-C-A | ** | ||||||
17028801-C-A | 14916921-C-A | FTA40136 | ** | |||||
10776214-C-A | ** | |||||||
10867211-C-A | ** | |||||||
10776130-C-G | ** | |||||||
5426364-GC-G | 5558323-GC-G | ** | ||||||
21583758-C-A | 19421872-C-A | ** | ||||||
10892103-T-C | ** | |||||||
3847251-C-A | 3979210-C-A | ** | ||||||
16702241-A-C | 14590361-A-C | ** | ||||||
6458355-C-A | 6590314-C-A | ** | ||||||
11017323-C-A | ** | |||||||
11025179-A-AC | ** | |||||||
11025181-CT-C | ** | |||||||
13922677-C-A | 11801971-C-A | ** | ||||||
2708411-CGAGAGAGAGAGAGAGAGAGAGAGAGAGA-C | 2840370-CGAGAGAGAGAGAGAGAGAGAGAGAGAGA-C | 23×GA | ** | |||||
2859032-G-A | 2990991-G-A | ** | ||||||
2900620-G-T | 3032579-G-T | ** | ||||||
2900643-G-T | 3032602-G-T | ** | ||||||
3285711-C-A | 3417670-C-A | ** | ||||||
3394038-G-T | 3525997-G-T | ** | ||||||
3478062-G-T | 3610021-G-T | ** | ||||||
3478064-G-T | 3610023-G-T | ** | ||||||
3544424-C-A | 3676383-C-A | ** | ||||||
3602599-C-A | 3734558-C-A | ** | ||||||
3603292-A-T | 3735251-A-T | ** | ||||||
3603408-C-A | 3735367-C-A | ** | ||||||
3694212-A-C | 3826171-A-C | ** | ||||||
3815222-T-C | 3947181-T-C | ** | ||||||
3883508-C-A | 4015467-C-A | ** | ||||||
4051382-T-C | 4183341-T-C | ** | ||||||
4062625-A-G | 4194584-A-G | ** | ||||||
4119949-C-A | 4251908-C-A | ** | ||||||
4213133-G-C | 4345092-G-C | ** | ||||||
4237273-G-T | 4369232-G-T | ** | ||||||
4241402-C-A | 4373361-C-A | ** | ||||||
4306595-T-C | 4438554-T-C | ** | ||||||
4426448-A-C | 4558407-A-C | ** | ||||||
4444947-T-A | 4576906-T-A | ** | ||||||
4527852-A-T | 4659811-A-T | ** | ||||||
4537425-C-A | 4669384-C-A | ** | ||||||
4540451-A-T | 4672410-A-T | ** | ||||||
4567057-T-C | 4699016-T-C | ** | ||||||
4567130-A-C | 4699089-A-C | ** | ||||||
4567814-C-A | 4699773-C-A | ** | ||||||
4646700-C-A | 4778659-C-A | ** | ||||||
4673359-G-T | 4805318-G-T | FT166207 | ** | |||||
4803349-T-C | 4935308-T-C | ** | ||||||
4803356-G-T | 4935315-G-T | ** | ||||||
4902994-G-T | 5034953-G-T | ** | ||||||
5032707-A-G | 5164666-A-G | ** | ||||||
5032712-C-A | 5164671-C-A | ** | ||||||
5261507-T-G | 5393466-T-G | ** | ||||||
5292808-C-A | 5424767-C-A | ** | ||||||
5381532-G-T | 5513491-G-T | ** | ||||||
5390978-C-A | 5522937-C-A | ** | ||||||
5404264-G-T | 5536223-G-T | ** | ||||||
5409694-TTTATTCATGTATATTTATAAAAG-T | 5541653-TTTATTCATGTATATTTATAAAAG-T | ** | ||||||
5443375-C-A | 5575334-C-A | ** | ||||||
5669823-C-A | 5801782-C-A | ** | ||||||
5714942-G-T | 5846901-G-T | ** | ||||||
5749302-T-A | 5881261-T-A | ** | ||||||
5772432-A-G | 5904391-A-G | ** | ||||||
5786828-C-A | 5918787-C-A | ** | ||||||
5842135-A-G | 5974094-A-G | ** | ||||||
5906916-G-T | 6038875-G-T | ** | ||||||
5957978-C-A | 6089937-C-A | ** | ||||||
5979632-T-A | 6111591-T-A | ** | ||||||
6584861-C-A | 6716820-C-A | ** | ||||||
6747973-C-A | 6879932-C-A | ** | ||||||
6976020-A-C | 7107979-A-C | ** | ||||||
7093626-G-T | 7225585-G-T | ** | ||||||
7134245-T-C | 7266204-T-C | ** | ||||||
7139310-T-A | 7271269-T-A | ** | ||||||
7160788-T-G | 7292747-T-G | ** | ||||||
7164197-G-GC | 7296156-G-GC | ** | ||||||
7164202-T-G | 7296161-T-G | ** | ||||||
7164203-C-T | 7296162-C-T | ** | ||||||
7164213-A-G | 7296172-A-G | ** | ||||||
7166107-C-A | 7298066-C-A | ** | ||||||
7190718-A-C | 7322677-A-C | ** | ||||||
7190733-T-G | 7322692-T-G | ** | ||||||
7229108-T-A | 7361067-T-A | ** | ||||||
7277478-T-A | 7409437-T-A | ** | ||||||
7330266-C-A | 7462225-C-A | ** | ||||||
7343171-T-A | 7475130-T-A | ** | ||||||
7347638-A-C | 7479597-A-C | ** | ||||||
7347643-T-A | 7479602-T-A | ** | ||||||
7378717-C-A | 7510676-C-A | ** | ||||||
7427999-T-G | 7559958-T-G | ** | ||||||
7541411-C-A | 7673370-C-A | ** | ||||||
7670820-C-A | 7802779-C-A | ** | ||||||
8095587-A-T | 8227546-A-T | ** | ||||||
8095610-G-T | 8227569-G-T | ** | ||||||
8110731-C-A | 8242690-C-A | ** | ||||||
8140238-C-A | 8272197-C-A | ** | ||||||
8849799-A-T | 8981758-A-T | ** | ||||||
8850013-C-A | 8981972-C-A | ** | ||||||
8911649-C-T | 9043608-C-T | ** | ||||||
8912879-T-A | 9044838-T-A | ** | ||||||
8912880-C-A | 9044839-C-A | ** | ||||||
9107871-C-A | ** | |||||||
9119130-G-T | ** | |||||||
9075262-C-A | 9237653-C-A | ** | ||||||
9320405-A-T | 9482796-A-T | ** | ||||||
9320412-A-T | 9482803-A-T | ** | ||||||
9320436-A-T | 9482827-A-T | ** | ||||||
9440541-C-A | 9602932-C-A | ** | ||||||
9493495-C-T | 9655886-C-T | ** | ||||||
9501181-G-T | 9663572-G-T | ** | ||||||
9722413-T-A | 9884804-T-A | IR3_Prx | ** | |||||
9735029-G-T | 9897420-G-T | IR3_Prx | ** | |||||
9735031-A-T | 9897422-A-T | IR3_Prx | ** | |||||
9773548-C-A | 9935939-C-A | ** | ||||||
9805226-C-A | 9967617-C-A | ** | ||||||
9939952-T-C | 10102343-T-C | ** | ||||||
9950554-C-A | 10112945-C-A | ** | ||||||
10661394-T-G | ** | |||||||
10671527-C-T | ** | |||||||
10672718-T-A | ** | |||||||
10684311-CCCCTCT-C | ** | |||||||
10687379-G-T | ** | |||||||
10764514-C-G | ** | |||||||
10772378-C-A | ** | |||||||
10772531-C-A | ** | |||||||
10805273-T-G | ** | |||||||
10812543-G-A | ** | |||||||
10819105-C-A | ** | |||||||
10819608-C-A | ** | |||||||
10840749-C-A | ** | |||||||
10843813-C-A | ** | |||||||
10879070-T-A | ** | |||||||
10887717-T-C | ** | |||||||
10888625-T-G | ** | |||||||
10892087-A-T | ** | |||||||
10906911-T-A | ** | |||||||
10906913-C-T | ** | |||||||
10918241-A-T | ** | |||||||
10924768-C-A | FT436721 | ** | ||||||
10924813-C-A | ** | |||||||
10948191-C-A | ** | |||||||
10956696-C-A | ** | |||||||
10959418-C-A | ** | |||||||
10972240-A-T | ** | |||||||
10974669-C-T | ** | |||||||
10978865-T-A | ** | |||||||
10980136-T-A | ** | |||||||
10993199-A-C | ** | |||||||
10997728-C-T | ** | |||||||
11008178-C-A | ** | |||||||
11010398-C-A | ** | |||||||
11010403-T-A | ** | |||||||
11019391-T-G | ** | |||||||
11025145-C-A | ** | |||||||
11033831-C-A | ** | |||||||
13258580-T-G | 11102904-T-G | ** | ||||||
13297451-C-A | 11141775-C-A | ** | ||||||
13297466-C-A | 11141790-C-A | ** | ||||||
13318013-A-T | 11162337-A-T | ** | ||||||
13429849-T-C | 11274173-T-C | ** | ||||||
13442967-C-A | 11287291-C-A | ** | ||||||
13503403-C-A | 11347727-C-A | ** | ||||||
13567140-A-C | 11411464-A-C | ** | ||||||
13567149-T-G | 11411473-T-G | ** | ||||||
13611889-C-A | 11456213-C-A | ** | ||||||
13631292-C-A | 11475616-C-A | ** | ||||||
13704707-G-T | 11549031-G-T | ** | ||||||
11650450-T-A | ** | |||||||
11656818-G-C | ** | |||||||
13804106-C-A | 11683400-C-A | ** | ||||||
13857588-ATGGGC-A | 11736882-ATGGGC-A | ** | ||||||
13898881-T-A | 11778175-T-A | ** | ||||||
13935691-A-C | 11814985-A-C | ** | ||||||
13940045-G-T | 11819339-G-T | ** | ||||||
14097938-C-A | 11977232-C-A | ** | ||||||
14174967-T-G | 12054261-T-G | ** | ||||||
14225814-C-A | 12105108-C-A | ** | ||||||
14226684-G-T | 12105978-G-T | ** | ||||||
14328205-C-A | 12207499-C-A | ** | ||||||
14351438-A-C | 12230733-A-C | ** | ||||||
14441956-G-A | 12321229-G-A | ** | ||||||
14450514-C-A | 12329787-C-A | ** | ||||||
14451931-T-G | 12331204-T-G | ** | ||||||
14461308-T-A | 12340581-T-A | ** | ||||||
14926395-G-A | 12814460-G-A | ** | ||||||
14986170-C-A | 12874238-C-A | ** | ||||||
15111494-C-G | 12999581-C-G | ** | ||||||
15180064-G-T | 13068150-G-T | ** | ||||||
15386389-A-C | 13274509-A-C | ** | ||||||
15424272-C-CAAA | 13312392-C-CAAA | 11×A | ** | |||||
15452270-C-A | 13340390-C-A | ** | ||||||
15605383-C-A | 13493503-C-A | ** | ||||||
15606733-C-A | 13494853-C-A | ** | ||||||
15648832-T-A | 13536952-T-A | ** | ||||||
15870527-T-C | 13758647-T-C | ** | ||||||
15893182-A-C | 13781302-A-C | ** | ||||||
16015283-C-A | 13903403-C-A | ** | ||||||
16017770-C-A | 13905890-C-A | ** | ||||||
16041125-C-A | 13929245-C-A | ** | ||||||
16220787-G-T | 14108907-G-T | ** | ||||||
16279425-C-A | 14167545-C-A | ** | ||||||
16342494-A-C | 14230614-A-C | ** | ||||||
16410130-C-A | 14298250-C-A | ** | ||||||
16445670-C-A | 14333790-C-A | ** | ||||||
16583354-C-A | 14471474-C-A | ** | ||||||
16662992-G-T | 14551112-G-T | ** | ||||||
16739339-T-G | 14627459-T-G | ** | ||||||
16999158-C-A | 14887278-C-A | ** | ||||||
17246398-C-A | 15134518-C-A | ** | ||||||
17315127-A-C | 15203247-A-C | ** | ||||||
17371061-C-A | 15259181-C-A | ** | ||||||
17428319-C-A | 15316439-C-A | ** | ||||||
17479184-C-A | 15367304-C-A | ** | ||||||
17547791-T-A | 15435911-T-A | ** | ||||||
17716861-C-A | 15604981-C-A | ** | ||||||
17804370-C-A | 15692490-C-A | ** | ||||||
18040488-T-G | 15928608-T-G | ** | ||||||
18071959-C-A | 15960079-C-A | ** | ||||||
18079664-G-A | 15967784-G-A | ** | ||||||
18401692-G-C | 16289812-G-C | P6_Gap | ** | |||||
18544847-T-G | 16432967-T-G | ** | ||||||
18630624-T-G | 16518744-T-G | ** | ||||||
18779427-C-A | 16667547-C-A | ** | ||||||
18859329-C-CT | 16747449-C-CT | ** | ||||||
18905342-G-T | 16793462-G-T | ** | ||||||
18990388-A-G | 16878508-A-G | ** | ||||||
19013527-C-A | 16901647-C-A | ** | ||||||
19125178-C-A | 17013298-C-A | ** | ||||||
19244844-C-A | 17132964-C-A | ** | ||||||
19394059-CTTTTTTTTTTTTTTT-C | 17282179-CTTTTTTTTTTTTTTT-C | 37×T | ** | |||||
19416560-C-A | 17304680-C-A | ** | ||||||
19448354-A-T | 17336474-A-T | ** | ||||||
19558840-C-A | 17446960-C-A | ** | ||||||
19610349-A-C | 17498469-A-C | P5_Prx | ** | |||||
19651144-T-A | 17539264-T-A | P5_Prx | ** | |||||
19651151-T-A | 17539271-T-A | P5_Prx | ** | |||||
19678069-T-G | 17566189-T-G | P5_Prx | ** | |||||
19678075-T-C | 17566195-T-C | P5_Prx | ** | |||||
19678094-A-T | 17566214-A-T | P5_Prx | ** | |||||
19678098-T-G | 17566218-T-G | P5_Prx | ** | |||||
19678762-C-A | 17566882-C-A | P5_Prx | ** | |||||
19678800-T-G | 17566920-T-G | P5_Prx | ** | |||||
19747145-A-T | 17635265-A-T | P5_Prx | ** | |||||
19747159-C-A | 17635279-C-A | P5_Prx | ** | |||||
19747172-C-G | 17635292-C-G | P5_Prx | ** | |||||
19747190-C-G | 17635310-C-G | P5_Prx | ** | |||||
19747197-A-T | 17635317-A-T | P5_Prx | ** | |||||
19794881-A-T | 17683001-A-T | P5_Prx | ** | |||||
19794888-A-T | 17683008-A-T | P5_Prx | ** | |||||
19794900-A-T | 17683020-A-T | P5_Prx | ** | |||||
19899734-T-G | 17787854-T-G | P5_Prx | ** | |||||
19955684-G-T | 17843804-G-T | P5_Prx | ** | |||||
20001395-T-A | 17889515-T-A | P5_Prx | ** | |||||
20001405-T-A | 17889525-T-A | P5_Prx | ** | |||||
20001423-T-A | 17889543-T-A | P5_Prx | ** | |||||
20050843-C-A | 17938963-C-A | P5_Prx | ** | |||||
20050866-T-A | 17938986-T-A | P5_Prx | ** | |||||
20050912-C-A | 17939032-C-A | P5_Prx | ** | |||||
20292454-T-TGG | 18130568-T-TGG | P5_Dst | ** | |||||
20400447-G-T | 18238561-G-T | P5_Dst | ** | |||||
20400457-A-T | 18238571-A-T | P5_Dst | ** | |||||
20579333-A-AGT | 18417447-A-AGT | P5_Dst | ** | |||||
20655022-ATGTGTGTGTGTG-A | 18493136-ATGTGTGTGTGTG-A | P4_Prx | 23×TG | ** | ||||
20707130-T-A | 18545244-T-A | P4_Prx | ** | |||||
20809708-C-A | 18647822-C-A | P4_Gap | ** | |||||
20872433-G-T | 18710547-G-T | P4_Dst | ** | |||||
20872459-TC-T | 18710573-TC-T | P4_Dst | ** | |||||
20883161-A-T | 18721275-A-T | P4_Dst | ** | |||||
20987321-C-A | 18825435-C-A | P4_Dst | ** | |||||
21118728-T-G | 18956842-T-G | ** | ||||||
21127494-A-G | 18965608-A-G | ** | ||||||
21152572-CAATTCCATAAGAAGTTACTATGAATCAAAGCGTA-C | 18990686-CAATTCCATAAGAAGTTACTATGAATCAAAGCGTA-C | ** | ||||||
21201295-A-C | 19039409-A-C | ** | ||||||
21201296-T-G | 19039410-T-G | ** | ||||||
21244054-C-A | 19082168-C-A | ** | ||||||
21267844-C-A | 19105958-C-A | ** | ||||||
21340349-A-C | 19178463-A-C | ** | ||||||
21371532-C-A | 19209646-C-A | ** | ||||||
21477159-C-A | 19315273-C-A | ** | ||||||
21544238-G-T | 19382352-G-T | ** | ||||||
21624512-T-C | 19462626-T-C | ** | ||||||
21671675-T-A | 19509789-T-A | ** | ||||||
21959220-C-A | 19797334-C-A | ** | ||||||
21984051-C-A | 19822165-C-A | ** | ||||||
22027752-T-A | 19865866-T-A | ** | ||||||
22041547-C-A | 19879661-C-A | ** | ||||||
22547190-TTCATC-T | 20385304-TTCATC-T | ** | ||||||
22668944-C-A | 20507058-C-A | ** | ||||||
22766717-C-A | 20604831-C-A | FT353462 | ** | |||||
23026715-C-A | 20864829-C-A | ** | ||||||
23039259-T-C | 20877373-T-C | ** | ||||||
23091788-A-C | 20929902-A-C | ** | ||||||
23185937-C-A | 21024051-C-A | ** | ||||||
23252603-G-T | 21090717-G-T | ** | ||||||
23337074-C-A | 21175188-C-A | ** | ||||||
23345832-T-A | 21183946-T-A | ** | ||||||
23360594-T-G | 21198708-T-G | ** | ||||||
23844946-T-A | 21683060-T-A | FT26874 | ** | |||||
24345010-G-T | 22198863-G-T | P3_t1 | ** | |||||
24345012-G-T | 22198865-G-T | P3_t1 | ** | |||||
24345027-G-T | 22198880-G-T | P3_t1 | ** | |||||
24345029-T-A | 22198882-T-A | P3_t1 | ** | |||||
24345032-G-T | 22198885-G-T | P3_t1 | ** | |||||
24345039-C-A | 22198892-C-A | P3_t1 | ** | |||||
24405051-A-C | 22258904-A-C | ** | ||||||
24407092-GA-G | 22260945-GA-G | ** | ||||||
24518416-T-C | 22372269-T-C | ** | ||||||
24627825-A-AT | 22481678-A-AT | P3_t2 | ** | |||||
25354563-C-A | 23208416-C-A | ** | ||||||
25719193-C-A | 23573046-C-A | P1_b3 | ** | |||||
25850582-G-T | 23704435-G-T | P1_Y1 | ** | |||||
25929234-T-TC | 23783087-T-TC | P1_Y1 | ** | |||||
25934338-A-G | 23788191-A-G | P1_Y1 | ** | |||||
25977679-A-T | 23831532-A-T | P1_Y1 | ** | |||||
26060331-C-A | 23914184-C-A | P1_Y1 | ** | |||||
26311968-G-T | 24165821-G-T | P1_Y1 | ** | |||||
26311978-C-A | 24165831-C-A | P1_Y1 | ** | |||||
26311983-T-A | 24165836-T-A | P1_Y1 | ** | |||||
26328730-C-A | 24182583-C-A | P1_Y1 | ** | |||||
26355341-C-A | 24209194-C-A | P1_Y1 | ** | |||||
26427144-G-T | 24280997-G-T | P1_Y1 | ** | |||||
27007862-G-T | 24861715-G-T | P1_r4 | ** | |||||
27810889-C-A | 25664742-C-A | P1_Y2 | ** | |||||
27810932-A-T | 25664785-A-T | P1_Y2 | ** | |||||
28506632-A-T | 26360485-A-T | ** | ||||||
28514389-C-A | 26368242-C-A | ** | ||||||
28607591-C-A | 26461444-C-A | ** | ||||||
28613372-C-A | 26467225-C-A | ** | ||||||
28618269-C-A | 26472122-C-A | ** | ||||||
28631571-C-A | 26485424-C-A | ** | ||||||
28655391-C-A | 26509244-C-A | ** | ||||||
28802838-G-T | 26656691-G-T | ** | ||||||
56848881-C-T | ** | |||||||
56862647-C-A | ** | |||||||
24532-G-T | ** | |||||||
13466085-G-C | 11310409-G-C | *** | ||||||
18952942-GAGGA-G | 16841062-GAGGA-G | 4×AGGA | *** | |||||
13521039-G-GATAT | 11365363-G-GATAT | 10×AT | *** | |||||
8462064-CAAAAA-C | 8594023-CAAAAA-C | 26×A | *** | |||||
19520845-TAA-T,TA | 17408965-TAA-T,TA | 21×A | *** | |||||
3992049-C-A | 4124008-C-A | *** | ||||||
16860784-G-T | 14748904-G-T | *** | ||||||
13862322-C-A | 11741616-C-A | *** | ||||||
3848741-C-A | 3980700-C-A | *** | ||||||
13466063-T-C | 11310387-T-C | *** | ||||||
23025229-CAAAA-C | 20863343-CAAAA-C | 29×A | *** | |||||
10754944-T-G | *** | |||||||
10759992-T-A | *** | |||||||
13253396-G-GTTT,GTTTTT | 11097720-G-GTTT,GTTTTT | 12×T | *** | |||||
10667018-C-G | *** | |||||||
5785696-C-A | 5917655-C-A | *** | ||||||
22914674-CAAAAAA-C | 20752788-CAAAAAA-C | 27×A | *** | |||||
10807259-T-C | *** | |||||||
10667040-A-G | *** | |||||||
10916112-G-T | *** | |||||||
10994111-G-A,T | *** | |||||||
9504009-C-A | 9666400-C-A | *** | ||||||
10776460-C-A | *** | |||||||
10958350-A-G | *** | |||||||
10958343-C-A | *** | |||||||
10657279-C-G | *** | |||||||
10958338-C-A | *** | |||||||
11003783-C-A | *** | |||||||
11008371-C-A | *** | |||||||
13196451-A-T | 11040775-A-T | *** | ||||||
13320183-C-A | 11164507-C-A | *** | ||||||
13643717-C-A | 11488041-C-A | *** | ||||||
14786112-C-A | 12674182-C-A | *** | ||||||
15034931-G-T | 12923019-G-T | *** | ||||||
15412771-C-CTTT | 13300891-C-CTTT | 15×T | *** | |||||
15477790-C-A | 13365910-C-A | *** | ||||||
15921555-T-C | 13809675-T-C | *** | ||||||
21285268-A-G | 19123382-A-G | *** | ||||||
56842151-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.