Joyner
BigY2: 631443MDKA Birth: England
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 631443 |
---|---|---|---|---|---|---|---|---|
6241186-T-G | 6373145-T-G | IR3_Dst | A* | |||||
13687269-A-G | 11531593-A-G | DYZ17 | A* | |||||
18336533-A-G | 16224653-A-G | P6_Prx | A* | |||||
19796110-C-A | 17684230-C-A | P5_Prx | A* | |||||
20650114-G-A | 18488228-G-A | P4_Prx | A* | |||||
25976285-G-A | 23830138-G-A | BY12932 | P1_Y1 | A* | ||||
26025709-G-T | 23879562-G-T | P1_Y1 | A* | |||||
26052726-A-G | 23906579-A-G | P1_Y1 | A* | |||||
24071538-C-CA | 21925391-C-CA | P3_b1 | + | |||||
14159554-T-A | 12038848-T-A | BY93450 | Y | Y | + | |||
22271575-G-T | 20109689-G-T | BY61171 | BY43727 | DYZ19 | + | |||
3436425-G-C | 3568384-G-C | BY57634 | + | |||||
4113383-G-A | 4245342-G-A | BY57988 | + | |||||
7865646-G-A | 7997605-G-A | BY47522 | Y | Y | + | |||
8686304-A-G | 8818263-A-G | BY75196 | Y | Y | + | |||
9465603-G-A | 9627994-G-A | BY79602 | Y | + | ||||
13652372-C-T | 11496696-C-T | BY47091 | DYZ17 | + | ||||
13681623-C-T | 11525947-C-T | BY88237 | DYZ17 | + | ||||
13832727-C-A | 11712021-C-A | BY90913 | DYZ17 | + | ||||
13850727-T-G | 11730021-T-G | A18228 | DYZ17 | + | ||||
14389808-G-A | 12269104-G-A | BY95385 | Y | Y | + | |||
14496388-G-A | 12384593-G-A | BY211487 | Y | Y | + | |||
14535084-C-T | 12423285-C-T | BY96343 | Y | Y | + | |||
16194311-C-T | 14082431-C-T | BY105892 | Y | Y | + | |||
16804324-A-G | 14692444-A-G | BY110278 | Y | Y | + | |||
16857992-G-A | 14746112-G-A | BY110626 | Y | Y | + | |||
17280929-T-G | 15169049-T-G | BY113440 | Y | Y | + | |||
17280930-GA-G | 15169050-GA-G | + | ||||||
17411340-A-G | 15299460-A-G | BY114562 | Y | Y | + | |||
17894432-T-C | 15782552-T-C | BY118219 | Y | Y | + | |||
18200071-G-A | 16088191-G-A | BY120795 | Y | Y | + | |||
18658930-C-G | 16547050-C-G | BY122902 | Y | Y | + | |||
19300657-G-A | 17188777-G-A | BY128062 | Y | + | ||||
19436224-T-C | 17324344-T-C | BY129028 | Y | Y | + | |||
21304212-C-T | 19142326-C-T | BY131904 | Y | Y | + | |||
22206147-G-T | 20044261-G-T | BY138454 | Y | Y | + | |||
22464468-C-A | 20302582-C-A | FT458385 | DYZ19 | + | ||||
22471029-C-A | 20309143-C-A | BY222500 | DYZ19 | + | ||||
22475949-G-C | 20314063-G-C | BY223472 | DYZ19 | + | ||||
22512752-G-A | 20350866-G-A | BY225918 | DYZ19 | + | ||||
22576966-A-G | 20415080-A-G | BY139216 | Y | Y | + | |||
23514541-C-G | 21352655-C-G | BY145894 | Y | Y | + | |||
28548379-T-G | 26402232-T-G | BY150671 | Y | + | ||||
28778539-G-A | 26632392-G-A | BY151165 | + | |||||
21503994-ATT-A,AT | 19342108-ATT-A,AT | 19×T | * | |||||
22230583-C-A | 20068697-C-A | ZS5159 | DYZ19 | * | ||||
22235285-C-G | 20073399-C-G | DYZ19 | * | |||||
22317380-G-T | 20155494-G-T | DYZ19 | * | |||||
3877046-C-A | 4009005-C-A | ** | ||||||
4081570-C-A | 4213529-C-A | FTA51665 | ** | |||||
13460460-G-C | 11304784-G-C | ** | ||||||
58976168-C-A | 56830021-C-A | ** | ||||||
7145737-C-A | 7277696-C-A | ** | ||||||
9924567-C-G | 10086958-C-G | ** | ||||||
9924584-G-C | 10086975-G-C | ** | ||||||
10999865-A-G | ** | |||||||
6770069-C-A | 6902028-C-A | ** | ||||||
16003974-T-G | 13892094-T-G | ** | ||||||
26250742-A-G | 24104595-A-G | P1_Y1 | ** | |||||
10926672-C-A | ** | |||||||
7861215-C-A | 7993174-C-A | ** | ||||||
9125438-C-A | ** | |||||||
11034793-C-T | ** | |||||||
10777973-T-G | ** | |||||||
10844234-A-G | ** | |||||||
20650646-A-T | 18488760-A-T | P4_Prx | ** | |||||
13726119-T-C | 11570443-T-C | DYZ17 | ** | |||||
10981303-C-A | ** | |||||||
2688705-C-A | 2820664-C-A | ** | ||||||
25970732-C-A | 23824585-C-A | P1_Y1 | ** | |||||
10983937-C-T | ** | |||||||
28521844-C-A | 26375697-C-A | ** | ||||||
10672516-C-A | ** | |||||||
16432665-T-G | 14320785-T-G | ** | ||||||
27398569-G-T | 25252422-G-T | P1_g3 | ** | |||||
10983957-T-TA | ** | |||||||
10983958-TC-T | ** | |||||||
27620753-A-T | 25474606-A-T | P1_Y2 | ** | |||||
27620761-G-T | 25474614-G-T | P1_Y2 | ** | |||||
10794274-C-T | ** | |||||||
6163572-C-A | 6295531-C-A | IR3_Dst | 12×T | ** | ||||
10672221-C-G | ** | |||||||
6339128-C-CAA | 6471087-C-CAA | IR3_Dst | ** | |||||
18769453-C-A | 16657573-C-A | ** | ||||||
5770539-G-T | 5902498-G-T | ** | ||||||
22122936-G-T | 19961050-G-T | ** | ||||||
2895220-C-A | 3027179-C-A | ** | ||||||
11002229-G-T | ** | |||||||
14158153-C-A | 12037447-C-A | ** | ||||||
28802831-A-T | 26656684-A-T | ** | ||||||
5873642-C-A | 6005601-C-A | ** | ||||||
21367326-C-A | 19205440-C-A | ** | ||||||
56845965-G-T | ** | |||||||
3602722-C-A | 3734681-C-A | ** | ||||||
24869943-C-A | 22723796-C-A | IR1_R | ** | |||||
14012239-C-A | 11891533-C-A | ** | ||||||
13255461-A-C | 11099785-A-C | ** | ||||||
19853821-C-A | 17741941-C-A | P5_Prx | ** | |||||
10844224-A-T | ** | |||||||
10887240-C-A | ** | |||||||
18345937-A-AAAAT | 16234057-A-AAAAT | P6_Prx | ** | |||||
16045399-C-A | 13933519-C-A | ** | ||||||
10876785-G-T | ** | |||||||
3285274-G-T | 3417233-G-T | ** | ||||||
10900881-C-A | ** | |||||||
13692793-A-T | 11537117-A-T | DYZ17 | ** | |||||
24177735-T-A | 22031588-T-A | P3_b1 | ** | |||||
10893252-G-T | ** | |||||||
23459766-C-A | 21297880-C-A | ** | ||||||
5755995-G-T | 5887954-G-T | ** | ||||||
23952509-G-T | 21806362-G-T | ** | ||||||
28755978-C-A | 26609831-C-A | ** | ||||||
10794256-C-T | ** | |||||||
6922660-C-A | 7054619-C-A | ** | ||||||
4540142-C-A | 4672101-C-A | ** | ||||||
5987941-G-T | 6119900-G-T | ** | ||||||
4139009-G-T | 4270968-G-T | ** | ||||||
15740952-C-A | 13629072-C-A | ** | ||||||
10963235-T-G | ** | |||||||
25970684-C-A | 23824537-C-A | P1_Y1 | ** | |||||
15157692-A-C | 13045779-A-C | ** | ||||||
13612009-C-A | 11456333-C-A | ** | ||||||
6421468-A-C | 6553427-A-C | ** | ||||||
8669687-C-A | 8801646-C-A | ** | ||||||
6445187-C-A | 6577146-C-A | ** | ||||||
10999621-C-A | ** | |||||||
23372957-C-A | 21211071-C-A | ** | ||||||
7160646-G-T | 7292605-G-T | ** | ||||||
20713362-A-G | 18551476-A-G | P4_Prx | ** | |||||
7471011-A-T | 7602970-A-T | IR1_L | ** | |||||
4016443-C-A | 4148402-C-A | ** | ||||||
15942949-C-A | 13831069-C-A | ** | ||||||
3218331-G-T | 3350290-G-T | ** | ||||||
10773974-C-A | ** | |||||||
3705203-C-A | 3837162-C-A | ** | ||||||
24247444-T-A | 22101297-T-A | P3_b1 | ** | |||||
28547393-C-A | 26401246-C-A | ** | ||||||
24475368-C-A | 22329221-C-A | ** | ||||||
10919562-AG-A | ** | |||||||
10919567-C-G | ** | |||||||
10900839-C-A | ** | |||||||
18159650-C-A | 16047770-C-A | ** | ||||||
10943101-C-A | ** | |||||||
28818193-A-T | 26672046-A-T | ** | ||||||
4223863-G-T | 4355822-G-T | ** | ||||||
10976144-C-A | ** | |||||||
10961000-G-T | ** | |||||||
10844230-T-G | ** | |||||||
7110554-C-A | 7242513-C-A | ** | ||||||
2684204-T-C | 2816163-T-C | ** | ||||||
2688689-A-T | 2820648-A-T | ** | ||||||
2688788-A-C | 2820747-A-C | ** | ||||||
2697547-A-T | 2829506-A-T | ** | ||||||
2928301-C-A | 3060260-C-A | ** | ||||||
2986033-A-C | 3117992-A-C | ** | ||||||
3015655-C-A | 3147614-C-A | ** | ||||||
3058957-C-A | 3190916-C-A | ** | ||||||
3096038-C-A | 3227997-C-A | ** | ||||||
3226682-C-A | 3358641-C-A | ** | ||||||
3285724-C-A | 3417683-C-A | ** | ||||||
3320359-G-T | 3452318-G-T | ** | ||||||
3364957-C-A | 3496916-C-A | ** | ||||||
3376683-C-A | 3508642-C-A | ** | ||||||
3395365-C-T | 3527324-C-T | FT292950 | ** | |||||
3418821-C-A | 3550780-C-A | ** | ||||||
3418951-C-A | 3550910-C-A | ** | ||||||
3429076-G-A | 3561035-G-A | ** | ||||||
3592433-C-A | 3724392-C-A | ** | ||||||
3602695-C-A | 3734654-C-A | ** | ||||||
3727094-C-A | 3859053-C-A | ** | ||||||
3794953-C-A | 3926912-C-A | ** | ||||||
3834164-C-A | 3966123-C-A | ** | ||||||
3836300-C-A | 3968259-C-A | ** | ||||||
3847420-G-A | 3979379-G-A | ** | ||||||
3896246-A-G | 4028205-A-G | ** | ||||||
4062574-T-G | 4194533-T-G | ** | ||||||
4097412-G-T | 4229371-G-T | ** | ||||||
4120056-C-A | 4252015-C-A | ** | ||||||
4125173-G-A | 4257132-G-A | ** | ||||||
4131980-C-A | 4263939-C-A | ** | ||||||
4153950-C-A | 4285909-C-A | ** | ||||||
4171609-C-A | 4303568-C-A | ** | ||||||
4174959-TTTC-T | 4306918-TTTC-T | ** | ||||||
4208152-A-C | 4340111-A-C | ** | ||||||
4223826-G-T | 4355785-G-T | ** | ||||||
4256822-A-T | 4388781-A-T | ** | ||||||
4343049-T-C | 4475008-T-C | ** | ||||||
4343274-T-A | 4475233-T-A | ** | ||||||
4417517-C-A | 4549476-C-A | ** | ||||||
4437848-C-A | 4569807-C-A | ** | ||||||
4442549-C-A | 4574508-C-A | ** | ||||||
4445198-G-T | 4577157-G-T | ** | ||||||
4445228-G-T | 4577187-G-T | ** | ||||||
4453522-T-C | 4585481-T-C | ** | ||||||
4509260-A-C | 4641219-A-C | ** | ||||||
4509269-T-G | 4641228-T-G | ** | ||||||
4521047-C-A | 4653006-C-A | ** | ||||||
4560010-C-A | 4691969-C-A | ** | ||||||
4568677-G-T | 4700636-G-T | ** | ||||||
4653710-C-A | 4785669-C-A | ** | ||||||
4653728-C-A | 4785687-C-A | ** | ||||||
4700314-A-G | 4832273-A-G | ** | ||||||
4902250-T-G | 5034209-T-G | ** | ||||||
4905406-T-A | 5037365-T-A | ** | ||||||
4918352-C-A | 5050311-C-A | ** | ||||||
4918903-C-A | 5050862-C-A | ** | ||||||
5011109-T-A | 5143068-T-A | ** | ||||||
5011118-C-A | 5143077-C-A | ** | ||||||
5022281-C-A | 5154240-C-A | ** | ||||||
5097376-A-T | 5229335-A-T | ** | ||||||
5097385-C-A | 5229344-C-A | ** | ||||||
5097388-G-C | 5229347-G-C | ** | ||||||
5097392-T-A | 5229351-T-A | ** | ||||||
5097393-G-T | 5229352-G-T | ** | ||||||
5148241-C-A | 5280200-C-A | ** | ||||||
5152238-G-T | 5284197-G-T | FT145280 | ** | |||||
5180340-GATAATCGTTTTCAA-G | 5312299-GATAATCGTTTTCAA-G | ** | ||||||
5191754-T-G | 5323713-T-G | ** | ||||||
5198985-G-T | 5330944-G-T | ** | ||||||
5219772-C-A | 5351731-C-A | ** | ||||||
5336029-C-A | 5467988-C-A | ** | ||||||
5405554-T-C | 5537513-T-C | ** | ||||||
5405604-G-A | 5537563-G-A | FGC64848 | ** | |||||
5555152-G-T | 5687111-G-T | ** | ||||||
5586746-T-G | 5718705-T-G | ** | ||||||
5696874-G-T | 5828833-G-T | ** | ||||||
5720816-G-T | 5852775-G-T | ** | ||||||
5760851-A-C | 5892810-A-C | ** | ||||||
5760897-T-G | 5892856-T-G | ** | ||||||
5760946-A-C | 5892905-A-C | ** | ||||||
5786850-G-T | 5918809-G-T | ** | ||||||
5795989-A-C | 5927948-A-C | ** | ||||||
5818711-T-G | 5950670-T-G | ** | ||||||
5853686-G-T | 5985645-G-T | ** | ||||||
5935951-G-T | 6067910-G-T | ** | ||||||
6003058-G-T | 6135017-G-T | ** | ||||||
6052632-C-A | 6184591-C-A | ** | ||||||
6075426-C-A | 6207385-C-A | ** | ||||||
6085405-C-A | 6217364-C-A | ** | ||||||
6095146-G-T | 6227105-G-T | ** | ||||||
6098282-C-A | 6230241-C-A | ** | ||||||
6210231-C-A | 6342190-C-A | IR3_Dst | ** | |||||
6210236-A-T | 6342195-A-T | IR3_Dst | ** | |||||
6210253-A-T | 6342212-A-T | IR3_Dst | ** | |||||
6210256-T-A | 6342215-T-A | IR3_Dst | ** | |||||
6210269-A-T | 6342228-A-T | IR3_Dst | ** | |||||
6210285-A-T | 6342244-A-T | IR3_Dst | ** | |||||
6216024-G-T | 6347983-G-T | IR3_Dst | ** | |||||
6279908-T-A | 6411867-T-A | IR3_Dst | ** | |||||
6279919-T-A | 6411878-T-A | IR3_Dst | ** | |||||
6352777-A-T | 6484736-A-T | ** | ||||||
6367847-G-T | 6499806-G-T | ** | ||||||
6429889-T-G | 6561848-T-G | ** | ||||||
6477312-C-T | 6609271-C-T | ** | ||||||
6493693-T-C | 6625652-T-C | ** | ||||||
6731179-T-G | 6863138-T-G | ** | ||||||
6747825-G-T | 6879784-G-T | ** | ||||||
6751327-T-A | 6883286-T-A | ** | ||||||
6757130-C-T | 6889089-C-T | ** | ||||||
6926478-C-A | 7058437-C-A | ** | ||||||
6981294-C-A | 7113253-C-A | 8×A | ** | |||||
6983966-C-T | 7115925-C-T | ** | ||||||
7021671-C-A | 7153630-C-A | ** | ||||||
7061351-C-G | 7193310-C-G | ** | ||||||
7080827-G-A | 7212786-G-A | ** | ||||||
7099981-T-A | 7231940-T-A | ** | ||||||
7166146-T-C | 7298105-T-C | ** | ||||||
7201483-A-T | 7333442-A-T | ** | ||||||
7320262-A-C | 7452221-A-C | ** | ||||||
7337122-C-A | 7469081-C-A | ** | ||||||
7360085-C-A | 7492044-C-A | ** | ||||||
7391891-C-A | 7523850-C-A | ** | ||||||
7470991-A-T | 7602950-A-T | IR1_L | ** | |||||
7470999-A-T | 7602958-A-T | IR1_L | ** | |||||
7471007-G-T | 7602966-G-T | IR1_L | ** | |||||
7829471-G-T | 7961430-G-T | ** | ||||||
7990690-A-C | 8122649-A-C | ** | ||||||
8061829-G-T | 8193788-G-T | ** | ||||||
8112288-G-A | 8244247-G-A | ** | ||||||
8133298-T-TA | 8265257-T-TA | 9×A | ** | |||||
8153715-CG-C | 8285674-CG-C | ** | ||||||
8178725-C-A | 8310684-C-A | ** | ||||||
8501687-T-G | 8633646-T-G | ** | ||||||
8669753-C-A | 8801712-C-A | ** | ||||||
8669768-A-C | 8801727-A-C | ** | ||||||
8674015-A-C | 8805974-A-C | ** | ||||||
8734031-C-A | 8865990-C-A | ** | ||||||
8761540-C-T | 8893499-C-T | FTB2895 | ** | |||||
8793025-T-G | 8924984-T-G | ** | ||||||
8816185-C-A | 8948144-C-A | ** | ||||||
8816358-C-A | 8948317-C-A | ** | ||||||
9107847-C-A | ** | |||||||
9119448-G-T | ** | |||||||
9320446-A-C | 9482837-A-C | ** | ||||||
9402987-C-A | 9565378-C-A | ** | ||||||
9551443-T-TA | 9713834-T-TA | IR3_Prx | ** | |||||
9564365-T-A | 9726756-T-A | IR3_Prx | ** | |||||
9566668-C-A | 9729059-C-A | IR3_Prx | ** | |||||
9602859-G-T | 9765250-G-T | IR3_Prx | ** | |||||
9602869-C-A | 9765260-C-A | IR3_Prx | ** | |||||
9664279-A-C | 9826670-A-C | IR3_Prx | ** | |||||
9806729-T-G | 9969120-T-G | ** | ||||||
9914463-A-C | 10076854-A-C | ** | ||||||
9924554-C-A | 10086945-C-A | ** | ||||||
9924558-G-T | 10086949-G-T | ** | ||||||
9927540-T-A | 10089931-T-A | ** | ||||||
9934116-T-G | 10096507-T-G | ** | ||||||
9956435-G-T | 10118826-G-T | ** | ||||||
9965348-C-A | 10127739-C-A | ** | ||||||
10011695-A-T | 10174086-A-T | ** | ||||||
10622328-C-CAA | 20×A | ** | ||||||
10648100-TCC-T | ** | |||||||
10654878-C-A | ** | |||||||
10661465-A-T | ** | |||||||
10663185-T-A | ** | |||||||
10692097-C-A | ** | |||||||
10755394-C-A | ** | |||||||
10755421-C-T | ** | |||||||
10759203-T-G | ** | |||||||
10763248-CTCCT-C | ** | |||||||
10785902-C-A | ** | |||||||
10791953-T-C | ** | |||||||
10792367-C-T | ** | |||||||
10793946-C-A | ** | |||||||
10794236-C-G | ** | |||||||
10794253-C-G | ** | |||||||
10794294-C-A | ** | |||||||
10794660-C-A | ** | |||||||
10819188-C-A | ** | |||||||
10821699-G-T | ** | |||||||
10826234-A-ATT | ** | |||||||
10827772-G-T | ** | |||||||
10828640-C-A | ** | |||||||
10844270-C-G | ** | |||||||
10859207-A-T | ** | |||||||
10919177-A-G | ** | |||||||
10929437-C-A | ** | |||||||
10949673-C-A | ** | |||||||
10956085-C-A | ** | |||||||
10963420-T-G | ** | |||||||
10973332-C-A | ** | |||||||
10974483-C-A | ** | |||||||
10975205-C-A | ** | |||||||
10981517-T-G | ** | |||||||
10983947-C-A | ** | |||||||
10991427-C-A | ** | |||||||
10999001-T-C | ** | |||||||
10999632-T-G | ** | |||||||
10999637-T-A | ** | |||||||
10999646-T-A | ** | |||||||
11003868-G-C | ** | |||||||
11011600-T-A | ** | |||||||
11013213-C-A | ** | |||||||
11019985-C-A | FT393887 | ** | ||||||
11021912-C-A | ** | |||||||
11031798-C-A | ** | |||||||
11034729-C-A | ** | |||||||
11034733-C-G | ** | |||||||
11034746-C-A | ** | |||||||
11034756-T-C | ** | |||||||
13249510-C-A | 11093834-C-A | ** | ||||||
13255534-A-C | 11099858-A-C | ** | ||||||
13308352-T-C | 11152676-T-C | ** | ||||||
13328618-G-T | 11172942-G-T | ** | ||||||
13360861-C-A | 11205185-C-A | ** | ||||||
13361490-C-A | 11205814-C-A | ** | ||||||
13392694-T-A | 11237018-T-A | ** | ||||||
13429671-C-A | 11273995-C-A | ** | ||||||
13460440-A-G | 11304764-A-G | ** | ||||||
13486888-T-G | 11331212-T-G | ** | ||||||
13522977-A-G | 11367301-A-G | ** | ||||||
13554676-C-A | 11399000-C-A | ** | ||||||
13570876-C-A | 11415200-C-A | ** | ||||||
13594437-A-C | 11438761-A-C | ** | ||||||
13605647-A-C | 11449971-A-C | ** | ||||||
13627219-C-A | 11471543-C-A | ** | ||||||
13710161-A-T | 11554485-A-T | DYZ17 | ** | |||||
13710174-G-T | 11554498-G-T | DYZ17 | ** | |||||
13710201-C-A | 11554525-C-A | DYZ17 | ** | |||||
13710357-G-T | 11554681-G-T | DYZ17 | ** | |||||
11662402-A-T | DYZ17 | ** | ||||||
11664153-A-G | DYZ17 | ** | ||||||
11674911-T-C | DYZ17 | ** | ||||||
13856303-A-C | 11735597-A-C | DYZ17 | 15×AATGG | ** | ||||
13881374-C-A | 11760668-C-A | ** | ||||||
13888671-G-T | 11767965-G-T | ** | ||||||
13902966-C-A | 11782260-C-A | ** | ||||||
13906201-C-A | 11785495-C-A | ** | ||||||
14012338-G-T | 11891632-G-T | ** | ||||||
14035038-T-G | 11914332-T-G | ** | ||||||
14114939-C-G | 11994233-C-G | ** | ||||||
14274040-T-A | 12153334-T-A | ** | ||||||
14280961-C-A | 12160255-C-A | ** | ||||||
14308014-T-G | 12187308-T-G | ** | ||||||
14344663-A-T | 12223958-A-T | ** | ||||||
14355098-A-C | 12234393-A-C | ** | ||||||
14387490-C-A | 12266786-C-A | ** | ||||||
14425461-G-T | 12304736-G-T | ** | ||||||
14431238-C-A | 12310511-C-A | ** | ||||||
14483573-A-T | 12362842-A-T | ** | ||||||
14510309-T-C | 12398514-T-C | ** | ||||||
14546539-CCTGCTGTCT-C | 12434740-CCTGCTGTCT-C | ** | ||||||
14555121-C-A | 12443322-C-A | ** | ||||||
14724704-G-T | 12612772-G-T | ** | ||||||
14765002-C-A | 12653071-C-A | ** | ||||||
15281679-A-G | 13169778-A-G | ** | ||||||
15285926-T-C | 13174025-T-C | ** | ||||||
15369930-G-A | 13258050-G-A | ** | ||||||
15386542-A-G | 13274662-A-G | Y93672 | ** | |||||
15399984-C-A | 13288104-C-A | ** | ||||||
15424681-G-T | 13312801-G-T | ** | ||||||
15450076-T-A | 13338196-T-A | ** | ||||||
15541846-C-A | 13429966-C-A | FT128760 | ** | |||||
15679884-C-A | 13568004-C-A | ** | ||||||
15699770-G-T | 13587890-G-T | ** | ||||||
15699801-G-T | 13587921-G-T | ** | ||||||
15769304-C-A | 13657424-C-A | ** | ||||||
15832194-G-T | 13720314-G-T | ** | ||||||
15932179-G-T | 13820299-G-T | ** | ||||||
15995548-C-A | 13883668-C-A | ** | ||||||
15999987-G-T | 13888107-G-T | 11780744-C-G | ** | |||||
16033529-T-A | 13921649-T-A | ** | ||||||
16046619-A-T | 13934739-A-T | ** | ||||||
16047092-T-A | 13935212-T-A | ** | ||||||
16048206-T-G | 13936326-T-G | ** | ||||||
16054965-C-A | 13943085-C-A | ** | ||||||
16055997-G-A | 13944117-G-A | ** | ||||||
16060503-C-A | 13948623-C-A | ** | ||||||
16116871-T-G | 14004991-T-G | P8_Prx | ** | |||||
16116883-A-C | 14005003-A-C | P8_Prx | ** | |||||
16116892-T-G | 14005012-T-G | P8_Prx | ** | |||||
16116909-A-T | 14005029-A-T | P8_Prx | ** | |||||
16116910-A-T | 14005030-A-T | P8_Prx | ** | |||||
16116925-T-G | 14005045-T-G | P8_Prx | ** | |||||
16352102-G-T | 14240222-G-T | ** | ||||||
16354041-C-A | 14242161-C-A | ** | ||||||
16421991-A-G | 14310111-A-G | ** | ||||||
16429939-C-A | 14318059-C-A | ** | ||||||
16464857-C-G | 14352977-C-G | ** | ||||||
16533440-T-G | 14421560-T-G | ** | ||||||
16540005-C-T | 14428125-C-T | ** | ||||||
16574771-A-C | 14462891-A-C | ** | ||||||
16625790-C-A | 14513910-C-A | ** | ||||||
16814098-T-G | 14702218-T-G | ** | ||||||
16827501-C-A | 14715621-C-A | ** | ||||||
16944826-T-G | 14832946-T-G | ** | ||||||
16990116-C-A | 14878236-C-A | ** | ||||||
16990122-A-T | 14878242-A-T | ** | ||||||
17029031-T-G | 14917151-T-G | ** | ||||||
17071245-A-G | 14959365-A-G | ** | ||||||
17087989-A-T | 14976109-A-T | ** | ||||||
17135795-T-G | 15023915-T-G | ** | ||||||
17153581-GT-G | 15041701-GT-G | ** | ||||||
17244525-G-T | 15132645-G-T | ** | ||||||
17371193-C-A | 15259313-C-A | ** | ||||||
17373907-G-T | 15262027-G-T | ** | ||||||
17382340-C-A | 15270460-C-A | ** | ||||||
17426840-A-C | 15314960-A-C | ** | ||||||
17428352-T-G | 15316472-T-G | ** | ||||||
17462003-G-T | 15350123-G-T | ** | ||||||
17548346-C-A | 15436466-C-A | ** | ||||||
17855922-C-A | 15744042-C-A | ** | ||||||
17928277-T-A | 15816397-T-A | ** | ||||||
17955722-A-T | 15843842-A-T | ** | ||||||
17966033-G-T | 15854153-G-T | ** | ||||||
18192389-C-A | 16080509-C-A | ** | ||||||
18226958-C-A | 16115078-C-A | ** | ||||||
18302484-A-C | 16190604-A-C | P6_Prx | ** | |||||
18316501-C-A | 16204621-C-A | P6_Prx | ** | |||||
18345947-C-CATAA | 16234067-C-CATAA | P6_Prx | ** | |||||
18354093-G-T | 16242213-G-T | P6_Prx | ** | |||||
18354126-A-C | 16242246-A-C | P6_Prx | ** | |||||
18407090-T-G | 16295210-T-G | P6_Gap | ** | |||||
18454801-T-C | 16342921-T-C | P6_Dst | ** | |||||
18627519-G-A | 16515639-G-A | ** | ||||||
18687533-T-A | 16575653-T-A | ** | ||||||
18847581-T-A | 16735701-T-A | ** | ||||||
18849049-G-T | 16737169-G-T | ** | ||||||
18891158-C-A | 16779278-C-A | ** | ||||||
19013733-T-A | 16901853-T-A | ** | ||||||
19013776-T-G | 16901896-T-G | ** | ||||||
19071344-G-A | 16959464-G-A | ** | ||||||
19075495-TG-T | 16963615-TG-T | ** | ||||||
19088425-A-C | 16976545-A-C | ** | ||||||
19310923-C-A | 17199043-C-A | ** | ||||||
19327444-C-A | 17215564-C-A | ** | ||||||
19370268-T-A | 17258388-T-A | ** | ||||||
19547513-A-C | 17435633-A-C | ** | ||||||
19936175-C-A | 17824295-C-A | P5_Prx | ** | |||||
20041161-A-T | 17929281-A-T | P5_Prx | ** | |||||
20041164-G-T | 17929284-G-T | P5_Prx | ** | |||||
20041173-C-G | 17929293-C-G | P5_Prx | ** | |||||
20041189-G-T | 17929309-G-T | P5_Prx | ** | |||||
20041201-G-T | 17929321-G-T | P5_Prx | ** | |||||
20041213-G-T | 17929333-G-T | P5_Prx | ** | |||||
20048169-T-A | 17936289-T-A | P5_Prx | ** | |||||
20110563-A-C | 17998683-A-C | P5_Dst | ** | |||||
20226655-A-T | 18064769-A-T | P5_Dst | ** | |||||
20226661-A-T | 18064775-A-T | P5_Dst | ** | |||||
20226673-A-T | 18064787-A-T | P5_Dst | ** | |||||
20226674-C-A | 18064788-C-A | P5_Dst | ** | |||||
20226686-A-T | 18064800-A-T | P5_Dst | ** | |||||
20231512-A-AAAGT | 18069626-A-AAAGT | P5_Dst | ** | |||||
20514346-C-A | 18352460-C-A | P5_Dst | ** | |||||
20514367-A-T | 18352481-A-T | P5_Dst | ** | |||||
20514378-C-A | 18352492-C-A | P5_Dst | ** | |||||
20514385-C-A | 18352499-C-A | P5_Dst | ** | |||||
20514388-C-A | 18352502-C-A | P5_Dst | ** | |||||
20514397-A-T | 18352511-A-T | P5_Dst | ** | |||||
20615916-A-C | 18454030-A-C | P4_Prx | ** | |||||
20650650-C-A | 18488764-C-A | P4_Prx | ** | |||||
20650651-C-A | 18488765-C-A | P4_Prx | ** | |||||
20650657-A-T | 18488771-A-T | P4_Prx | ** | |||||
20650671-G-T | 18488785-G-T | P4_Prx | ** | |||||
20661857-AAT-A | 18499971-AAT-A | P4_Prx | ** | |||||
20755720-C-A | 18593834-C-A | P4_Prx | ** | |||||
20760119-A-T | 18598233-A-T | P4_Prx | ** | |||||
21042618-G-T | 18880732-G-T | ** | ||||||
21072469-T-C | 18910583-T-C | ** | ||||||
21111903-C-A | 18950017-C-A | ** | ||||||
21323234-G-T | 19161348-G-T | ** | ||||||
21325677-A-T | 19163791-A-T | ** | ||||||
21348637-T-A | 19186751-T-A | ** | ||||||
21535087-C-A | 19373201-C-A | ** | ||||||
21583759-A-C | 19421873-A-C | ** | ||||||
21589175-A-T | 19427289-A-T | ** | ||||||
21624789-A-C | 19462903-A-C | ** | ||||||
21861815-T-G | 19699929-T-G | ** | ||||||
22011994-G-C | 19850108-G-C | ** | ||||||
22052431-C-A | 19890545-C-A | ** | ||||||
22060344-C-A | 19898458-C-A | ** | ||||||
22080707-A-C | 19918821-A-C | ** | ||||||
22169948-A-G | 20008062-A-G | ** | ||||||
22241547-A-C | 20079661-A-C | DYZ19 | ** | |||||
22263606-A-T | 20101720-A-T | DYZ19 | ** | |||||
22335939-C-A | 20174053-C-A | DYZ19 | ** | |||||
22335982-T-A | 20174096-T-A | DYZ19 | ** | |||||
22335986-G-T | 20174100-G-T | DYZ19 | ** | |||||
22335990-C-A | 20174104-C-A | DYZ19 | ** | |||||
22336002-A-T | 20174116-A-T | DYZ19 | ** | |||||
22343575-A-G | 20181689-A-G | DYZ19 | ** | |||||
22511177-G-T | 20349291-G-T | BY225730 | DYZ19 | ** | ||||
22535836-T-A | 20373950-T-A | ** | ||||||
22594141-G-T | 20432255-G-T | ** | ||||||
22594152-G-T | 20432266-G-T | ** | ||||||
22690044-C-A | 20528158-C-A | ** | ||||||
22880655-A-C | 20718769-A-C | ** | ||||||
23066507-C-A | 20904621-C-A | ** | ||||||
23127878-T-G | 20965992-T-G | ** | ||||||
23198214-T-C | 21036328-T-C | ** | ||||||
23229318-A-T | 21067432-A-T | ** | ||||||
23345741-C-A | 21183855-C-A | ** | ||||||
23362968-G-T | 21201082-G-T | ** | ||||||
23786990-T-A | 21625104-T-A | ** | ||||||
23886282-T-A | 21724396-T-A | ** | ||||||
24265854-A-T | 22119707-A-T | P3_b1 | ** | |||||
24268528-T-A | 22122381-T-A | P3_b1 | ** | |||||
24268536-C-A | 22122389-C-A | P3_b1 | ** | |||||
24268547-T-A | 22122400-T-A | P3_b1 | ** | |||||
24268561-G-C | 22122414-G-C | P3_b1 | ** | |||||
24268563-G-T | 22122416-G-T | P3_b1 | ** | |||||
24268573-T-A | 22122426-T-A | P3_b1 | ** | |||||
25190706-G-T | 23044559-G-T | g1 | ** | |||||
25190712-C-A | 23044565-C-A | g1 | ** | |||||
25190725-T-A | 23044578-T-A | g1 | ** | |||||
25190738-C-A | 23044591-C-A | g1 | ** | |||||
25190756-T-A | 23044609-T-A | g1 | ** | |||||
25617968-C-A | 23471821-C-A | P1_gr1 | ** | |||||
25858424-T-G | 23712277-T-G | P1_Y1 | ** | |||||
25858428-A-C | 23712281-A-C | P1_Y1 | ** | |||||
25988114-A-T | 23841967-A-T | P1_Y1 | ** | |||||
25995524-A-T | 23849377-A-T | P1_Y1 | ** | |||||
26001459-G-T | 23855312-G-T | P1_Y1 | ** | |||||
26001463-G-T | 23855316-G-T | P1_Y1 | ** | |||||
26001468-G-T | 23855321-G-T | P1_Y1 | ** | |||||
26199649-A-T | 24053502-A-T | P1_Y1 | ** | |||||
26199662-A-T | 24053515-A-T | P1_Y1 | ** | |||||
26199663-A-T | 24053516-A-T | P1_Y1 | ** | |||||
26323740-G-T | 24177593-G-T | P1_Y1 | ** | |||||
26480409-G-T | 24334262-G-T | P1_Y1 | ** | |||||
27010459-A-C | 24864312-A-C | P1_r4 | ** | |||||
27010474-A-T | 24864327-A-T | P1_r4 | ** | |||||
27289384-G-T | 25143237-G-T | P1_g3 | ** | |||||
27398558-G-T | 25252411-G-T | P1_g3 | ** | |||||
27607799-G-T | 25461652-G-T | P1_Y2 | ** | |||||
27847419-A-T | 25701272-A-T | P1_Y2 | ** | |||||
27847433-C-A | 25701286-C-A | P1_Y2 | ** | |||||
27847444-C-A | 25701297-C-A | P1_Y2 | ** | |||||
27847445-C-A | 25701298-C-A | P1_Y2 | ** | |||||
27847451-A-T | 25701304-A-T | P1_Y2 | ** | |||||
27847457-G-T | 25701310-G-T | P1_Y2 | ** | |||||
27847466-G-T | 25701319-G-T | P1_Y2 | ** | |||||
27847478-G-T | 25701331-G-T | P1_Y2 | ** | |||||
27847479-A-T | 25701332-A-T | P1_Y2 | ** | |||||
27959602-G-T | 25813455-G-T | P1_Y2 | ** | |||||
27959609-G-T | 25813462-G-T | P1_Y2 | ** | |||||
28076499-C-T | 25930352-C-T | P1_Y2 | ** | |||||
28429443-T-G | 26283296-T-G | P1_gr2 | ** | |||||
28438248-T-A | 26292101-T-A | P1_gr2 | ** | |||||
28502514-C-A | 26356367-C-A | ** | ||||||
28560981-C-A | 26414834-C-A | ** | ||||||
28606536-G-T | 26460389-G-T | ** | ||||||
28617628-T-A | 26471481-T-A | ** | ||||||
28617650-A-C | 26471503-A-C | ** | ||||||
28617654-A-C | 26471507-A-C | ** | ||||||
28617659-A-C | 26471512-A-C | ** | ||||||
28696685-T-A | 26550538-T-A | ** | ||||||
28707751-A-G | 26561604-A-G | ** | ||||||
28715242-T-G | 26569095-T-G | ** | ||||||
28780185-A-T | 26634038-A-T | ** | ||||||
28802838-G-A | 26656691-G-A | ** | ||||||
28815032-C-A | 26668885-C-A | ** | ||||||
56828346-T-C | ** | |||||||
56829938-CATT-C | ** | |||||||
56829982-C-G | ** | |||||||
56829993-C-T | ** | |||||||
56829994-A-C | ** | |||||||
56830031-T-A | ** | |||||||
56830227-C-T | ** | |||||||
56858194-C-A | ** | |||||||
56859105-G-A | ** | |||||||
56873950-C-A | ** | |||||||
56876238-T-A | ** | |||||||
8904-T-C | ** | |||||||
15074-A-C | ** | |||||||
15083-T-G | ** | |||||||
56840838-C-A | *** | |||||||
11643742-TG-GT | DYZ17 | *** | ||||||
10973598-A-C | *** | |||||||
10912061-C-T | *** | |||||||
3990693-G-T | 4122652-G-T | *** | ||||||
17375599-C-A | 15263719-C-A | *** | ||||||
56833108-CTCCAT-C | *** | |||||||
21152531-C-A | 18990645-C-A | FT69149 FTA24750 | *** | |||||
21394722-C-A | 19232836-C-A | *** | ||||||
23564790-G-GA | 21402904-G-GA | 8×A | *** | |||||
7861415-T-A | 7993374-T-A | *** | ||||||
10657312-T-G | *** | |||||||
10677456-C-T | *** | |||||||
10824541-C-A | *** | |||||||
10925027-G-C,T | *** | |||||||
11656492-T-C | DYZ17 | *** | ||||||
15325123-CTT-C,CTTT | 13213241-CTT-C,CTTT | 11×T | *** | |||||
16271807-GAAA-G,GAA | 14159927-GAAA-G,GAA | 19×A | *** | |||||
16707462-G-T | 14595582-G-T | *** | ||||||
18754890-G-T | 16643010-G-T | *** | ||||||
21182397-CTTTTTTT-C,CTTTT | 19020511-CTTTTTTT-C,CTTTT | 20×T | *** | |||||
21714655-A-G | 19552769-A-G | *** | ||||||
28773649-C-T | 26627502-C-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.