Tree Position

R-P312/S116 > Z40481 > FGC84729 > DF99/S11987 > Z29643 > FGC16982 > S23540 > FGC16979

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
631443
6241186-T-G 6373145-T-G IR3_Dst A*
13687269-A-G 11531593-A-G DYZ17 A*
18336533-A-G 16224653-A-G P6_Prx A*
19796110-C-A 17684230-C-A P5_Prx A*
20650114-G-A 18488228-G-A P4_Prx A*
25976285-G-A 23830138-G-A BY12932 P1_Y1 A*
26025709-G-T 23879562-G-T P1_Y1 A*
26052726-A-G 23906579-A-G P1_Y1 A*
24071538-C-CA 21925391-C-CA P3_b1 +
14159554-T-A 12038848-T-A BY93450 YY+
22271575-G-T 20109689-G-T BY61171BY43727 DYZ19 +
3436425-G-C 3568384-G-C BY57634 +
4113383-G-A 4245342-G-A BY57988 +
7865646-G-A 7997605-G-A BY47522 YY+
8686304-A-G 8818263-A-G BY75196 YY+
9465603-G-A 9627994-G-A BY79602 Y+
13652372-C-T 11496696-C-T BY47091 DYZ17 +
13681623-C-T 11525947-C-T BY88237 DYZ17 +
13832727-C-A 11712021-C-A BY90913 DYZ17 +
13850727-T-G 11730021-T-G A18228 DYZ17 +
14389808-G-A 12269104-G-A BY95385 YY+
14496388-G-A 12384593-G-A BY211487 YY+
14535084-C-T 12423285-C-T BY96343 YY+
16194311-C-T 14082431-C-T BY105892 YY+
16804324-A-G 14692444-A-G BY110278 YY+
16857992-G-A 14746112-G-A BY110626 YY+
17280929-T-G 15169049-T-G BY113440 YY+
17280930-GA-G 15169050-GA-G +
17411340-A-G 15299460-A-G BY114562 YY+
17894432-T-C 15782552-T-C BY118219 YY+
18200071-G-A 16088191-G-A BY120795 YY+
18658930-C-G 16547050-C-G BY122902 YY+
19300657-G-A 17188777-G-A BY128062 Y+
19436224-T-C 17324344-T-C BY129028 YY+
21304212-C-T 19142326-C-T BY131904 YY+
22206147-G-T 20044261-G-T BY138454 YY+
22464468-C-A 20302582-C-A FT458385 DYZ19 +
22471029-C-A 20309143-C-A BY222500 DYZ19 +
22475949-G-C 20314063-G-C BY223472 DYZ19 +
22512752-G-A 20350866-G-A BY225918 DYZ19 +
22576966-A-G 20415080-A-G BY139216 YY+
23514541-C-G 21352655-C-G BY145894 YY+
28548379-T-G 26402232-T-G BY150671 Y+
28778539-G-A 26632392-G-A BY151165 +
21503994-ATT-A,AT 19342108-ATT-A,AT 19×T*
22230583-C-A 20068697-C-A ZS5159 DYZ19 *
22235285-C-G 20073399-C-G DYZ19 *
22317380-G-T 20155494-G-T DYZ19 *
3877046-C-A 4009005-C-A **
4081570-C-A 4213529-C-A FTA51665 **
13460460-G-C 11304784-G-C **
58976168-C-A 56830021-C-A **
7145737-C-A 7277696-C-A **
9924567-C-G 10086958-C-G **
9924584-G-C 10086975-G-C **
10999865-A-G **
6770069-C-A 6902028-C-A **
16003974-T-G 13892094-T-G **
26250742-A-G 24104595-A-G P1_Y1 **
10926672-C-A **
7861215-C-A 7993174-C-A **
9125438-C-A **
11034793-C-T **
10777973-T-G **
10844234-A-G **
20650646-A-T 18488760-A-T P4_Prx **
13726119-T-C 11570443-T-C DYZ17 **
10981303-C-A **
2688705-C-A 2820664-C-A **
25970732-C-A 23824585-C-A P1_Y1 **
10983937-C-T **
28521844-C-A 26375697-C-A **
10672516-C-A **
16432665-T-G 14320785-T-G **
27398569-G-T 25252422-G-T P1_g3 **
10983957-T-TA **
10983958-TC-T **
27620753-A-T 25474606-A-T P1_Y2 **
27620761-G-T 25474614-G-T P1_Y2 **
10794274-C-T **
6163572-C-A 6295531-C-A IR3_Dst 12×T**
10672221-C-G **
6339128-C-CAA 6471087-C-CAA IR3_Dst **
18769453-C-A 16657573-C-A **
5770539-G-T 5902498-G-T **
22122936-G-T 19961050-G-T **
2895220-C-A 3027179-C-A **
11002229-G-T **
14158153-C-A 12037447-C-A **
28802831-A-T 26656684-A-T **
5873642-C-A 6005601-C-A **
21367326-C-A 19205440-C-A **
56845965-G-T **
3602722-C-A 3734681-C-A **
24869943-C-A 22723796-C-A IR1_R **
14012239-C-A 11891533-C-A **
13255461-A-C 11099785-A-C **
19853821-C-A 17741941-C-A P5_Prx **
10844224-A-T **
10887240-C-A **
18345937-A-AAAAT 16234057-A-AAAAT P6_Prx **
16045399-C-A 13933519-C-A **
10876785-G-T **
3285274-G-T 3417233-G-T **
10900881-C-A **
13692793-A-T 11537117-A-T DYZ17 **
24177735-T-A 22031588-T-A P3_b1 **
10893252-G-T **
23459766-C-A 21297880-C-A **
5755995-G-T 5887954-G-T **
23952509-G-T 21806362-G-T **
28755978-C-A 26609831-C-A **
10794256-C-T **
6922660-C-A 7054619-C-A **
4540142-C-A 4672101-C-A **
5987941-G-T 6119900-G-T **
4139009-G-T 4270968-G-T **
15740952-C-A 13629072-C-A **
10963235-T-G **
25970684-C-A 23824537-C-A P1_Y1 **
15157692-A-C 13045779-A-C **
13612009-C-A 11456333-C-A **
6421468-A-C 6553427-A-C **
8669687-C-A 8801646-C-A **
6445187-C-A 6577146-C-A **
10999621-C-A **
23372957-C-A 21211071-C-A **
7160646-G-T 7292605-G-T **
20713362-A-G 18551476-A-G P4_Prx **
7471011-A-T 7602970-A-T IR1_L **
4016443-C-A 4148402-C-A **
15942949-C-A 13831069-C-A **
3218331-G-T 3350290-G-T **
10773974-C-A **
3705203-C-A 3837162-C-A **
24247444-T-A 22101297-T-A P3_b1 **
28547393-C-A 26401246-C-A **
24475368-C-A 22329221-C-A **
10919562-AG-A **
10919567-C-G **
10900839-C-A **
18159650-C-A 16047770-C-A **
10943101-C-A **
28818193-A-T 26672046-A-T **
4223863-G-T 4355822-G-T **
10976144-C-A **
10961000-G-T **
10844230-T-G **
7110554-C-A 7242513-C-A **
2684204-T-C 2816163-T-C **
2688689-A-T 2820648-A-T **
2688788-A-C 2820747-A-C **
2697547-A-T 2829506-A-T **
2928301-C-A 3060260-C-A **
2986033-A-C 3117992-A-C **
3015655-C-A 3147614-C-A **
3058957-C-A 3190916-C-A **
3096038-C-A 3227997-C-A **
3226682-C-A 3358641-C-A **
3285724-C-A 3417683-C-A **
3320359-G-T 3452318-G-T **
3364957-C-A 3496916-C-A **
3376683-C-A 3508642-C-A **
3395365-C-T 3527324-C-T FT292950 **
3418821-C-A 3550780-C-A **
3418951-C-A 3550910-C-A **
3429076-G-A 3561035-G-A **
3592433-C-A 3724392-C-A **
3602695-C-A 3734654-C-A **
3727094-C-A 3859053-C-A **
3794953-C-A 3926912-C-A **
3834164-C-A 3966123-C-A **
3836300-C-A 3968259-C-A **
3847420-G-A 3979379-G-A **
3896246-A-G 4028205-A-G **
4062574-T-G 4194533-T-G **
4097412-G-T 4229371-G-T **
4120056-C-A 4252015-C-A **
4125173-G-A 4257132-G-A **
4131980-C-A 4263939-C-A **
4153950-C-A 4285909-C-A **
4171609-C-A 4303568-C-A **
4174959-TTTC-T 4306918-TTTC-T **
4208152-A-C 4340111-A-C **
4223826-G-T 4355785-G-T **
4256822-A-T 4388781-A-T **
4343049-T-C 4475008-T-C **
4343274-T-A 4475233-T-A **
4417517-C-A 4549476-C-A **
4437848-C-A 4569807-C-A **
4442549-C-A 4574508-C-A **
4445198-G-T 4577157-G-T **
4445228-G-T 4577187-G-T **
4453522-T-C 4585481-T-C **
4509260-A-C 4641219-A-C **
4509269-T-G 4641228-T-G **
4521047-C-A 4653006-C-A **
4560010-C-A 4691969-C-A **
4568677-G-T 4700636-G-T **
4653710-C-A 4785669-C-A **
4653728-C-A 4785687-C-A **
4700314-A-G 4832273-A-G **
4902250-T-G 5034209-T-G **
4905406-T-A 5037365-T-A **
4918352-C-A 5050311-C-A **
4918903-C-A 5050862-C-A **
5011109-T-A 5143068-T-A **
5011118-C-A 5143077-C-A **
5022281-C-A 5154240-C-A **
5097376-A-T 5229335-A-T **
5097385-C-A 5229344-C-A **
5097388-G-C 5229347-G-C **
5097392-T-A 5229351-T-A **
5097393-G-T 5229352-G-T **
5148241-C-A 5280200-C-A **
5152238-G-T 5284197-G-T FT145280 **
5180340-GATAATCGTTTTCAA-G 5312299-GATAATCGTTTTCAA-G **
5191754-T-G 5323713-T-G **
5198985-G-T 5330944-G-T **
5219772-C-A 5351731-C-A **
5336029-C-A 5467988-C-A **
5405554-T-C 5537513-T-C **
5405604-G-A 5537563-G-A FGC64848 **
5555152-G-T 5687111-G-T **
5586746-T-G 5718705-T-G **
5696874-G-T 5828833-G-T **
5720816-G-T 5852775-G-T **
5760851-A-C 5892810-A-C **
5760897-T-G 5892856-T-G **
5760946-A-C 5892905-A-C **
5786850-G-T 5918809-G-T **
5795989-A-C 5927948-A-C **
5818711-T-G 5950670-T-G **
5853686-G-T 5985645-G-T **
5935951-G-T 6067910-G-T **
6003058-G-T 6135017-G-T **
6052632-C-A 6184591-C-A **
6075426-C-A 6207385-C-A **
6085405-C-A 6217364-C-A **
6095146-G-T 6227105-G-T **
6098282-C-A 6230241-C-A **
6210231-C-A 6342190-C-A IR3_Dst **
6210236-A-T 6342195-A-T IR3_Dst **
6210253-A-T 6342212-A-T IR3_Dst **
6210256-T-A 6342215-T-A IR3_Dst **
6210269-A-T 6342228-A-T IR3_Dst **
6210285-A-T 6342244-A-T IR3_Dst **
6216024-G-T 6347983-G-T IR3_Dst **
6279908-T-A 6411867-T-A IR3_Dst **
6279919-T-A 6411878-T-A IR3_Dst **
6352777-A-T 6484736-A-T **
6367847-G-T 6499806-G-T **
6429889-T-G 6561848-T-G **
6477312-C-T 6609271-C-T **
6493693-T-C 6625652-T-C **
6731179-T-G 6863138-T-G **
6747825-G-T 6879784-G-T **
6751327-T-A 6883286-T-A **
6757130-C-T 6889089-C-T **
6926478-C-A 7058437-C-A **
6981294-C-A 7113253-C-A 8×A**
6983966-C-T 7115925-C-T **
7021671-C-A 7153630-C-A **
7061351-C-G 7193310-C-G **
7080827-G-A 7212786-G-A **
7099981-T-A 7231940-T-A **
7166146-T-C 7298105-T-C **
7201483-A-T 7333442-A-T **
7320262-A-C 7452221-A-C **
7337122-C-A 7469081-C-A **
7360085-C-A 7492044-C-A **
7391891-C-A 7523850-C-A **
7470991-A-T 7602950-A-T IR1_L **
7470999-A-T 7602958-A-T IR1_L **
7471007-G-T 7602966-G-T IR1_L **
7829471-G-T 7961430-G-T **
7990690-A-C 8122649-A-C **
8061829-G-T 8193788-G-T **
8112288-G-A 8244247-G-A **
8133298-T-TA 8265257-T-TA 9×A**
8153715-CG-C 8285674-CG-C **
8178725-C-A 8310684-C-A **
8501687-T-G 8633646-T-G **
8669753-C-A 8801712-C-A **
8669768-A-C 8801727-A-C **
8674015-A-C 8805974-A-C **
8734031-C-A 8865990-C-A **
8761540-C-T 8893499-C-T FTB2895 **
8793025-T-G 8924984-T-G **
8816185-C-A 8948144-C-A **
8816358-C-A 8948317-C-A **
9107847-C-A **
9119448-G-T **
9320446-A-C 9482837-A-C **
9402987-C-A 9565378-C-A **
9551443-T-TA 9713834-T-TA IR3_Prx **
9564365-T-A 9726756-T-A IR3_Prx **
9566668-C-A 9729059-C-A IR3_Prx **
9602859-G-T 9765250-G-T IR3_Prx **
9602869-C-A 9765260-C-A IR3_Prx **
9664279-A-C 9826670-A-C IR3_Prx **
9806729-T-G 9969120-T-G **
9914463-A-C 10076854-A-C **
9924554-C-A 10086945-C-A **
9924558-G-T 10086949-G-T **
9927540-T-A 10089931-T-A **
9934116-T-G 10096507-T-G **
9956435-G-T 10118826-G-T **
9965348-C-A 10127739-C-A **
10011695-A-T 10174086-A-T **
10622328-C-CAA 20×A**
10648100-TCC-T **
10654878-C-A **
10661465-A-T **
10663185-T-A **
10692097-C-A **
10755394-C-A **
10755421-C-T **
10759203-T-G **
10763248-CTCCT-C **
10785902-C-A **
10791953-T-C **
10792367-C-T **
10793946-C-A **
10794236-C-G **
10794253-C-G **
10794294-C-A **
10794660-C-A **
10819188-C-A **
10821699-G-T **
10826234-A-ATT **
10827772-G-T **
10828640-C-A **
10844270-C-G **
10859207-A-T **
10919177-A-G **
10929437-C-A **
10949673-C-A **
10956085-C-A **
10963420-T-G **
10973332-C-A **
10974483-C-A **
10975205-C-A **
10981517-T-G **
10983947-C-A **
10991427-C-A **
10999001-T-C **
10999632-T-G **
10999637-T-A **
10999646-T-A **
11003868-G-C **
11011600-T-A **
11013213-C-A **
11019985-C-A FT393887 **
11021912-C-A **
11031798-C-A **
11034729-C-A **
11034733-C-G **
11034746-C-A **
11034756-T-C **
13249510-C-A 11093834-C-A **
13255534-A-C 11099858-A-C **
13308352-T-C 11152676-T-C **
13328618-G-T 11172942-G-T **
13360861-C-A 11205185-C-A **
13361490-C-A 11205814-C-A **
13392694-T-A 11237018-T-A **
13429671-C-A 11273995-C-A **
13460440-A-G 11304764-A-G **
13486888-T-G 11331212-T-G **
13522977-A-G 11367301-A-G **
13554676-C-A 11399000-C-A **
13570876-C-A 11415200-C-A **
13594437-A-C 11438761-A-C **
13605647-A-C 11449971-A-C **
13627219-C-A 11471543-C-A **
13710161-A-T 11554485-A-T DYZ17 **
13710174-G-T 11554498-G-T DYZ17 **
13710201-C-A 11554525-C-A DYZ17 **
13710357-G-T 11554681-G-T DYZ17 **
11662402-A-T DYZ17 **
11664153-A-G DYZ17 **
11674911-T-C DYZ17 **
13856303-A-C 11735597-A-C DYZ17 15×AATGG**
13881374-C-A 11760668-C-A **
13888671-G-T 11767965-G-T **
13902966-C-A 11782260-C-A **
13906201-C-A 11785495-C-A **
14012338-G-T 11891632-G-T **
14035038-T-G 11914332-T-G **
14114939-C-G 11994233-C-G **
14274040-T-A 12153334-T-A **
14280961-C-A 12160255-C-A **
14308014-T-G 12187308-T-G **
14344663-A-T 12223958-A-T **
14355098-A-C 12234393-A-C **
14387490-C-A 12266786-C-A **
14425461-G-T 12304736-G-T **
14431238-C-A 12310511-C-A **
14483573-A-T 12362842-A-T **
14510309-T-C 12398514-T-C **
14546539-CCTGCTGTCT-C 12434740-CCTGCTGTCT-C **
14555121-C-A 12443322-C-A **
14724704-G-T 12612772-G-T **
14765002-C-A 12653071-C-A **
15281679-A-G 13169778-A-G **
15285926-T-C 13174025-T-C **
15369930-G-A 13258050-G-A **
15386542-A-G 13274662-A-G Y93672 **
15399984-C-A 13288104-C-A **
15424681-G-T 13312801-G-T **
15450076-T-A 13338196-T-A **
15541846-C-A 13429966-C-A FT128760 **
15679884-C-A 13568004-C-A **
15699770-G-T 13587890-G-T **
15699801-G-T 13587921-G-T **
15769304-C-A 13657424-C-A **
15832194-G-T 13720314-G-T **
15932179-G-T 13820299-G-T **
15995548-C-A 13883668-C-A **
15999987-G-T 13888107-G-T 11780744-C-G **
16033529-T-A 13921649-T-A **
16046619-A-T 13934739-A-T **
16047092-T-A 13935212-T-A **
16048206-T-G 13936326-T-G **
16054965-C-A 13943085-C-A **
16055997-G-A 13944117-G-A **
16060503-C-A 13948623-C-A **
16116871-T-G 14004991-T-G P8_Prx **
16116883-A-C 14005003-A-C P8_Prx **
16116892-T-G 14005012-T-G P8_Prx **
16116909-A-T 14005029-A-T P8_Prx **
16116910-A-T 14005030-A-T P8_Prx **
16116925-T-G 14005045-T-G P8_Prx **
16352102-G-T 14240222-G-T **
16354041-C-A 14242161-C-A **
16421991-A-G 14310111-A-G **
16429939-C-A 14318059-C-A **
16464857-C-G 14352977-C-G **
16533440-T-G 14421560-T-G **
16540005-C-T 14428125-C-T **
16574771-A-C 14462891-A-C **
16625790-C-A 14513910-C-A **
16814098-T-G 14702218-T-G **
16827501-C-A 14715621-C-A **
16944826-T-G 14832946-T-G **
16990116-C-A 14878236-C-A **
16990122-A-T 14878242-A-T **
17029031-T-G 14917151-T-G **
17071245-A-G 14959365-A-G **
17087989-A-T 14976109-A-T **
17135795-T-G 15023915-T-G **
17153581-GT-G 15041701-GT-G **
17244525-G-T 15132645-G-T **
17371193-C-A 15259313-C-A **
17373907-G-T 15262027-G-T **
17382340-C-A 15270460-C-A **
17426840-A-C 15314960-A-C **
17428352-T-G 15316472-T-G **
17462003-G-T 15350123-G-T **
17548346-C-A 15436466-C-A **
17855922-C-A 15744042-C-A **
17928277-T-A 15816397-T-A **
17955722-A-T 15843842-A-T **
17966033-G-T 15854153-G-T **
18192389-C-A 16080509-C-A **
18226958-C-A 16115078-C-A **
18302484-A-C 16190604-A-C P6_Prx **
18316501-C-A 16204621-C-A P6_Prx **
18345947-C-CATAA 16234067-C-CATAA P6_Prx **
18354093-G-T 16242213-G-T P6_Prx **
18354126-A-C 16242246-A-C P6_Prx **
18407090-T-G 16295210-T-G P6_Gap **
18454801-T-C 16342921-T-C P6_Dst **
18627519-G-A 16515639-G-A **
18687533-T-A 16575653-T-A **
18847581-T-A 16735701-T-A **
18849049-G-T 16737169-G-T **
18891158-C-A 16779278-C-A **
19013733-T-A 16901853-T-A **
19013776-T-G 16901896-T-G **
19071344-G-A 16959464-G-A **
19075495-TG-T 16963615-TG-T **
19088425-A-C 16976545-A-C **
19310923-C-A 17199043-C-A **
19327444-C-A 17215564-C-A **
19370268-T-A 17258388-T-A **
19547513-A-C 17435633-A-C **
19936175-C-A 17824295-C-A P5_Prx **
20041161-A-T 17929281-A-T P5_Prx **
20041164-G-T 17929284-G-T P5_Prx **
20041173-C-G 17929293-C-G P5_Prx **
20041189-G-T 17929309-G-T P5_Prx **
20041201-G-T 17929321-G-T P5_Prx **
20041213-G-T 17929333-G-T P5_Prx **
20048169-T-A 17936289-T-A P5_Prx **
20110563-A-C 17998683-A-C P5_Dst **
20226655-A-T 18064769-A-T P5_Dst **
20226661-A-T 18064775-A-T P5_Dst **
20226673-A-T 18064787-A-T P5_Dst **
20226674-C-A 18064788-C-A P5_Dst **
20226686-A-T 18064800-A-T P5_Dst **
20231512-A-AAAGT 18069626-A-AAAGT P5_Dst **
20514346-C-A 18352460-C-A P5_Dst **
20514367-A-T 18352481-A-T P5_Dst **
20514378-C-A 18352492-C-A P5_Dst **
20514385-C-A 18352499-C-A P5_Dst **
20514388-C-A 18352502-C-A P5_Dst **
20514397-A-T 18352511-A-T P5_Dst **
20615916-A-C 18454030-A-C P4_Prx **
20650650-C-A 18488764-C-A P4_Prx **
20650651-C-A 18488765-C-A P4_Prx **
20650657-A-T 18488771-A-T P4_Prx **
20650671-G-T 18488785-G-T P4_Prx **
20661857-AAT-A 18499971-AAT-A P4_Prx **
20755720-C-A 18593834-C-A P4_Prx **
20760119-A-T 18598233-A-T P4_Prx **
21042618-G-T 18880732-G-T **
21072469-T-C 18910583-T-C **
21111903-C-A 18950017-C-A **
21323234-G-T 19161348-G-T **
21325677-A-T 19163791-A-T **
21348637-T-A 19186751-T-A **
21535087-C-A 19373201-C-A **
21583759-A-C 19421873-A-C **
21589175-A-T 19427289-A-T **
21624789-A-C 19462903-A-C **
21861815-T-G 19699929-T-G **
22011994-G-C 19850108-G-C **
22052431-C-A 19890545-C-A **
22060344-C-A 19898458-C-A **
22080707-A-C 19918821-A-C **
22169948-A-G 20008062-A-G **
22241547-A-C 20079661-A-C DYZ19 **
22263606-A-T 20101720-A-T DYZ19 **
22335939-C-A 20174053-C-A DYZ19 **
22335982-T-A 20174096-T-A DYZ19 **
22335986-G-T 20174100-G-T DYZ19 **
22335990-C-A 20174104-C-A DYZ19 **
22336002-A-T 20174116-A-T DYZ19 **
22343575-A-G 20181689-A-G DYZ19 **
22511177-G-T 20349291-G-T BY225730 DYZ19 **
22535836-T-A 20373950-T-A **
22594141-G-T 20432255-G-T **
22594152-G-T 20432266-G-T **
22690044-C-A 20528158-C-A **
22880655-A-C 20718769-A-C **
23066507-C-A 20904621-C-A **
23127878-T-G 20965992-T-G **
23198214-T-C 21036328-T-C **
23229318-A-T 21067432-A-T **
23345741-C-A 21183855-C-A **
23362968-G-T 21201082-G-T **
23786990-T-A 21625104-T-A **
23886282-T-A 21724396-T-A **
24265854-A-T 22119707-A-T P3_b1 **
24268528-T-A 22122381-T-A P3_b1 **
24268536-C-A 22122389-C-A P3_b1 **
24268547-T-A 22122400-T-A P3_b1 **
24268561-G-C 22122414-G-C P3_b1 **
24268563-G-T 22122416-G-T P3_b1 **
24268573-T-A 22122426-T-A P3_b1 **
25190706-G-T 23044559-G-T g1 **
25190712-C-A 23044565-C-A g1 **
25190725-T-A 23044578-T-A g1 **
25190738-C-A 23044591-C-A g1 **
25190756-T-A 23044609-T-A g1 **
25617968-C-A 23471821-C-A P1_gr1 **
25858424-T-G 23712277-T-G P1_Y1 **
25858428-A-C 23712281-A-C P1_Y1 **
25988114-A-T 23841967-A-T P1_Y1 **
25995524-A-T 23849377-A-T P1_Y1 **
26001459-G-T 23855312-G-T P1_Y1 **
26001463-G-T 23855316-G-T P1_Y1 **
26001468-G-T 23855321-G-T P1_Y1 **
26199649-A-T 24053502-A-T P1_Y1 **
26199662-A-T 24053515-A-T P1_Y1 **
26199663-A-T 24053516-A-T P1_Y1 **
26323740-G-T 24177593-G-T P1_Y1 **
26480409-G-T 24334262-G-T P1_Y1 **
27010459-A-C 24864312-A-C P1_r4 **
27010474-A-T 24864327-A-T P1_r4 **
27289384-G-T 25143237-G-T P1_g3 **
27398558-G-T 25252411-G-T P1_g3 **
27607799-G-T 25461652-G-T P1_Y2 **
27847419-A-T 25701272-A-T P1_Y2 **
27847433-C-A 25701286-C-A P1_Y2 **
27847444-C-A 25701297-C-A P1_Y2 **
27847445-C-A 25701298-C-A P1_Y2 **
27847451-A-T 25701304-A-T P1_Y2 **
27847457-G-T 25701310-G-T P1_Y2 **
27847466-G-T 25701319-G-T P1_Y2 **
27847478-G-T 25701331-G-T P1_Y2 **
27847479-A-T 25701332-A-T P1_Y2 **
27959602-G-T 25813455-G-T P1_Y2 **
27959609-G-T 25813462-G-T P1_Y2 **
28076499-C-T 25930352-C-T P1_Y2 **
28429443-T-G 26283296-T-G P1_gr2 **
28438248-T-A 26292101-T-A P1_gr2 **
28502514-C-A 26356367-C-A **
28560981-C-A 26414834-C-A **
28606536-G-T 26460389-G-T **
28617628-T-A 26471481-T-A **
28617650-A-C 26471503-A-C **
28617654-A-C 26471507-A-C **
28617659-A-C 26471512-A-C **
28696685-T-A 26550538-T-A **
28707751-A-G 26561604-A-G **
28715242-T-G 26569095-T-G **
28780185-A-T 26634038-A-T **
28802838-G-A 26656691-G-A **
28815032-C-A 26668885-C-A **
56828346-T-C **
56829938-CATT-C **
56829982-C-G **
56829993-C-T **
56829994-A-C **
56830031-T-A **
56830227-C-T **
56858194-C-A **
56859105-G-A **
56873950-C-A **
56876238-T-A **
8904-T-C **
15074-A-C **
15083-T-G **
56840838-C-A ***
11643742-TG-GT DYZ17 ***
10973598-A-C ***
10912061-C-T ***
3990693-G-T 4122652-G-T ***
17375599-C-A 15263719-C-A ***
56833108-CTCCAT-C ***
21152531-C-A 18990645-C-A FT69149 FTA24750 ***
21394722-C-A 19232836-C-A ***
23564790-G-GA 21402904-G-GA 8×A***
7861415-T-A 7993374-T-A ***
10657312-T-G ***
10677456-C-T ***
10824541-C-A ***
10925027-G-C,T ***
11656492-T-C DYZ17 ***
15325123-CTT-C,CTTT 13213241-CTT-C,CTTT 11×T***
16271807-GAAA-G,GAA 14159927-GAAA-G,GAA 19×A***
16707462-G-T 14595582-G-T ***
18754890-G-T 16643010-G-T ***
21182397-CTTTTTTT-C,CTTTT 19020511-CTTTTTTT-C,CTTTT 20×T***
21714655-A-G 19552769-A-G ***
28773649-C-T 26627502-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.