Whitmore

BigY2: 103733
MDKA Birth: United States > Virginia

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > Z2186 > L1066 > BY411

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
103733
22307673-G-A 20145787-G-A DYZ19 A*
2888657-T-C 3020616-T-C L92L92 YY+
9840403-G-C 10002794-G-C Z25495 FGC17207 YY+
22263138-G-A 20101252-G-A BY43706 DYZ19 +
6681130-T-A 6813089-T-A BY60728 YY+
6839955-C-T 6971914-C-T BY61616 YY+
7530946-G-T 7662905-G-T BY65699 YY+
8683258-G-A 8815217-G-A BY75158 YY+
8771438-C-T 8903397-C-T BY75774 YY+
9130368-G-C 9292759-G-C BY78372 Y+
9777396-T-A 9939787-T-A BY80952 Y+
13200336-C-A 11044660-C-A BY84299 +
13672757-T-C 11517081-T-C BY87891 DYZ17 +
15404629-T-A 13292749-T-A BY156495 YY+
19166644-C-T 17054764-C-T BY126900 Y+
21093031-C-T 18931145-C-T BY130375 YY+
21507233-C-T 19345347-C-T BY133467 YY+
21676443-G-A 19514557-G-A BY134676 YY+
22472829-G-T 20310943-G-T BY22125 DYZ19 +
22788378-C-T 20626492-C-T BY140776 YY+
22845271-C-T 20683385-C-T BY141195 YY+
23242716-C-T 21080830-C-T BY143992 YY+
19567257-T-TTAAAC 17455377-T-TTAAAC 6×TAAAC*
13452332-GATTCCATTCCATTCCATTCCATTCC-G,GATTCCATTCCATTCCATTCCATTCCATTCC 11296656-GATTCCATTCCATTCCATTCCATTCC-G,GATTCCATTCCATTCCATTCCATTCCATTCC 12×ATTCC*
22257601-A-G 20095715-A-G BY214504 DYZ19 *
28792086-A-T 26645939-A-T *
13457616-A-C 11301940-A-C **
16605040-C-A 14493160-C-A **
8218181-C-T 8350140-C-T **
22484701-G-T 20322815-G-T DYZ19 **
15278766-A-T 13166855-A-T **
5926005-G-T 6057964-G-T **
10885079-T-G **
18242805-C-A 16130925-C-A **
13488759-C-G 11333083-C-G **
13488763-C-T 11333087-C-T **
19530312-CTT-C 17418432-CTT-C 11×T**
10959010-C-G **
22484666-G-T 20322780-G-T DYZ19 **
10648079-T-A **
13698522-C-A 11542846-C-A DYZ17 **
10880308-A-T **
10946397-G-T **
13480865-C-A 11325189-C-A **
10800761-A-T **
10925468-C-T **
9957970-C-A 10120361-C-A **
16896539-CAAAA-C 14784659-CAAAA-C 17×A**
10759348-A-C **
10959616-C-A **
10746998-C-G **
21802615-C-A 19640729-C-A **
28591157-C-A 26445010-C-A **
14848950-C-A 12737016-C-A **
23306060-C-A 21144174-C-A **
28776769-C-A 26630622-C-A **
10769451-A-T **
11643670-A-T DYZ17 **
20723368-C-T 18561482-C-T P4_Prx **
6028909-C-A 6160868-C-A **
10793221-ACTGCT-A **
10915915-C-A **
56841469-C-T **
10865559-T-C **
10686588-C-T **
11025289-A-T **
11025290-T-C **
28818179-G-C 26672032-G-C **
11673146-G-T DYZ17 **
13705421-G-A 11549745-G-A DYZ17 **
56728139-A-C **
22258160-C-A 20096274-C-A DYZ19 **
10958975-G-A **
23206945-G-T 21045059-G-T FT424464 **
11014734-T-A **
6490752-C-A 6622711-C-A **
10748220-T-G **
22634835-C-A 20472949-C-A **
19031451-C-A 16919571-C-A **
16295676-C-A 14183796-C-A **
10865549-C-A **
6992482-C-A 7124441-C-A **
8325561-C-A 8457520-C-A **
8556130-C-A 8688089-C-A **
13253274-T-A 11097598-T-A **
8172682-C-A 8304641-C-A **
28794238-G-C 26648091-G-C **
10839052-T-A **
13927345-C-A 11806639-C-A **
10775043-T-C **
24241205-C-CAA 22095058-C-CAA P3_b1 **
18480370-C-A 16368490-C-A P6_Dst **
22316420-G-T 20154534-G-T DYZ19 **
22263897-G-C 20102011-G-C DYZ19 **
10765661-C-A **
10785244-A-C **
10671721-A-C **
10816640-G-T **
10944561-C-T **
15740525-C-A 13628645-C-A **
18855403-CTTTT-C 16743523-CTTTT-C 14×T**
10958963-T-C **
10958984-T-G **
10959015-C-G **
16047913-C-A 13936033-C-A **
18522315-G-T 16410435-G-T P6_Dst **
22333866-A-G 20171980-A-G A4134 DYZ19 **
10773503-A-T **
10927424-T-A **
20110596-C-A 17998716-C-A P5_Dst **
3015729-C-A 3147688-C-A **
7201629-C-T 7333588-C-T **
10804295-T-A **
22518484-C-A 20356598-C-A **
10754046-G-T **
10923641-C-G **
3640470-C-A 3772429-C-A **
17858888-C-A 15747008-C-A **
56838489-A-T **
17505627-C-A 15393747-C-A **
7334203-C-A 7466162-C-A **
7645506-C-A 7777465-C-A **
3079480-C-A 3211439-C-A **
5022037-A-AAT 5153996-A-AAT **
10927404-T-C **
10927444-T-A **
3626508-G-T 3758467-G-T **
4124107-C-A 4256066-C-A **
19218179-C-A 17106299-C-A **
10946403-G-C **
10648086-C-G **
19537927-G-T 17426047-G-T **
10663814-T-G **
10663839-C-A **
10653212-G-C **
7717813-T-A 7849772-T-A **
5449217-C-A 5581176-C-A **
9117203-C-A 9279594-C-A **
9566959-GT-G 9729350-GT-G IR3_Prx **
28806499-G-T 26660352-G-T **
10925526-T-A **
14357833-C-A 12237128-C-A **
18918703-T-G 16806823-T-G **
10834608-C-A **
7142813-C-A 7274772-C-A **
11650429-A-C DYZ17 **
10625627-C-A **
3294397-C-A 3426356-C-A **
10656342-G-C **
6313320-CCA-C 6445279-CCA-C IR3_Dst **
18924968-C-A 16813088-C-A **
19558278-T-A 17446398-T-A **
9887058-C-A 10049449-C-A **
10990642-T-C **
10859527-A-T **
22561334-C-A 20399448-C-A **
8154101-C-A 8286060-C-A **
8913883-G-T 9045842-G-T **
10775042-A-T **
17014369-C-A 14902489-C-A **
10746998-C-CGGCT **
14557503-G-T 12445704-G-T **
14608304-T-TC 12496506-T-TC **
2683524-G-T 2815483-G-T **
2915004-T-C 3046963-T-C **
2981261-G-T 3113220-G-T **
3087517-A-T 3219476-A-T **
3093978-C-A 3225937-C-A **
3126763-A-T 3258722-A-T **
3215213-A-T 3347172-A-T **
3267859-C-A 3399818-C-A **
3366089-C-G 3498048-C-G **
3366111-A-G 3498070-A-G **
3500594-G-T 3632553-G-T **
3500625-A-C 3632584-A-C **
3511450-G-C 3643409-G-C **
3550712-G-A 3682671-G-A **
3582350-G-T 3714309-G-T **
3582358-G-T 3714317-G-T **
3582499-T-G 3714458-T-G **
3601277-T-G 3733236-T-G **
3627751-G-T 3759710-G-T **
3640467-C-A 3772426-C-A **
3640481-T-C 3772440-T-C **
3640488-T-G 3772447-T-G **
3640498-T-C 3772457-T-C **
3640564-C-A 3772523-C-A **
3640571-C-A 3772530-C-A **
3645557-G-T 3777516-G-T **
3670621-G-T 3802580-G-T **
3834534-C-G 3966493-C-G **
3834627-G-C 3966586-G-C **
4065231-C-A 4197190-C-A **
4087945-C-A 4219904-C-A **
4172312-C-A 4304271-C-A **
4216053-G-A 4348012-G-A **
4418341-C-G 4550300-C-G **
4418351-T-G 4550310-T-G **
4438015-T-C 4569974-T-C **
4703158-G-T 4835117-G-T **
4792891-C-A 4924850-C-A **
4856636-G-T 4988595-G-T **
4875378-G-T 5007337-G-T FT16942 **
5022028-T-G 5153987-T-G **
5023786-G-T 5155745-G-T **
5154515-G-T 5286474-G-T **
5190972-C-A 5322931-C-A **
5221085-C-A 5353044-C-A **
5255742-A-C 5387701-A-C **
5255748-T-C 5387707-T-C **
5255765-G-T 5387724-G-T **
5255803-A-C 5387762-A-C **
5274730-C-A 5406689-C-A **
5303350-A-T 5435309-A-T 22×T**
5310011-C-A 5441970-C-A **
5339926-C-A 5471885-C-A **
5420453-A-T 5552412-A-T **
5449186-A-C 5581145-A-C **
5559173-A-C 5691132-A-C **
5625461-C-A 5757420-C-A **
5849867-C-A 5981826-C-A **
5859087-A-C 5991046-A-C **
5859253-C-A 5991212-C-A **
5887665-C-A 6019624-C-A **
6056387-T-A 6188346-T-A **
6092427-T-G 6224386-T-G **
6191341-C-G 6323300-C-G IR3_Dst **
6226012-C-A 6357971-C-A IR3_Dst **
6226049-T-A 6358008-T-A IR3_Dst **
6355663-A-C 6487622-A-C **
6359194-A-G 6491153-A-G **
6403580-G-T 6535539-G-T **
6646773-C-A 6778732-C-A **
6776174-C-A 6908133-C-A **
7043761-G-T 7175720-G-T **
7108935-C-A 7240894-C-A **
7123511-A-C 7255470-A-C **
7148970-G-T 7280929-G-T **
7170688-G-T 7302647-G-T **
7221572-A-C 7353531-A-C **
7243804-C-G 7375763-C-G **
7255393-G-T 7387352-G-T **
7255397-C-A 7387356-C-A **
7294465-C-A 7426424-C-A **
7318581-G-T 7450540-G-T **
7392454-C-A 7524413-C-A **
7392465-C-A 7524424-C-A **
7461352-G-C 7593311-G-C IR1_L **
7461358-T-G 7593317-T-G IR1_L **
7499434-C-A 7631393-C-A IR1_L **
7507129-G-T 7639088-G-T **
7754796-G-T 7886755-G-T **
7754809-A-G 7886768-A-G **
7756861-A-G 7888820-A-G **
7896836-C-A 8028795-C-A **
7898615-C-A 8030574-C-A **
8043177-C-A 8175136-C-A **
8102679-G-T 8234638-G-T **
8170455-C-A 8302414-C-A **
8650098-A-AAG 8782057-A-AAG **
8650104-G-A 8782063-G-A **
8658182-A-T 8790141-A-T **
8790277-G-T 8922236-G-T **
8851543-G-T 8983502-G-T **
8851557-G-T 8983516-G-T **
9082372-T-A 9244763-T-A **
9141888-C-A 9304279-C-A **
9493910-G-T 9656301-G-T **
9493921-A-G 9656312-A-G **
9493929-A-T 9656320-A-T **
9493935-G-T 9656326-G-T **
9493950-T-G 9656341-T-G **
9493963-C-A 9656354-C-A **
9494491-T-G 9656882-T-G **
9566962-TG-T 9729353-TG-T IR3_Prx **
9822696-A-C 9985087-A-C **
9932791-C-A 10095182-C-A **
9935324-C-A 10097715-C-A **
9935334-C-A 10097725-C-A **
9935342-A-C 10097733-A-C **
9935345-A-C 10097736-A-C **
9959031-G-A 10121422-G-A **
10013824-A-C 10176215-A-C **
10023846-C-A 10186237-C-A **
10032724-G-T 10195115-G-T **
10041810-C-A 10204201-C-A **
10041857-T-G 10204248-T-G **
10656376-T-A **
10663712-C-A **
10664109-C-A **
10667935-A-T **
10672495-A-T **
10672506-C-G **
10684253-C-G **
10747073-G-T **
10749252-C-A **
10763327-ATTCC-A **
10770408-T-G **
10770410-C-G **
10776183-T-A **
10779237-C-G **
10795284-T-C **
10795376-C-A **
10800264-G-T **
10802030-C-A **
10804315-A-C **
10804336-C-A **
10804345-A-C **
10811007-T-G **
10822752-C-A **
10824101-C-A **
10837162-C-A **
10838246-C-G **
10838263-C-G **
10838268-CTACTC-G **
10838519-C-A **
10838571-C-T FT433522 **
10839047-T-TACCGA **
10839663-A-C **
10839969-C-A **
10842511-A-ACTC **
10842513-TCCA-T **
10842526-A-T **
10842546-A-C **
10845032-C-A **
10848589-C-A **
10851529-A-C **
10865549-CTCGAT-C **
10867276-C-A **
10873480-C-A **
10873492-C-A **
10875228-T-C **
10876642-T-A **
10915944-C-A **
10925484-C-T **
10925495-A-C **
10925535-A-T **
10929846-A-G **
10929847-C-G **
10936092-C-A **
10940331-C-G **
10941848-C-A **
10942153-A-C **
10944464-CACACT-C **
10944478-A-C **
10944511-G-C **
10944614-C-A **
10947514-A-T **
10974448-G-C **
10974793-C-A **
10974829-A-T **
10974832-C-T **
10989950-C-A **
10990701-TC-T **
10990705-C-CT **
11016315-T-A **
11016335-T-G **
11016348-A-T **
11016358-A-C **
11020522-C-G **
11032978-T-C **
11032985-C-A **
11032986-A-C **
13206261-T-A 11050585-T-A **
13217525-G-T 11061849-G-T **
13217532-T-G 11061856-T-G **
13217535-G-T 11061859-G-T **
13225886-A-C 11070210-A-C **
13227960-C-A 11072284-C-A **
13313750-A-C 11158074-A-C **
13410375-A-C 11254699-A-C **
13435658-T-A 11279982-T-A **
13437232-T-G 11281556-T-G **
13444996-T-G 11289320-T-G **
13453243-C-CGGCTT 11297567-C-CGGCTT **
13457740-C-CGGGTAGTTAA 11302064-C-CGGGTAGTTAA **
13480837-C-T 11325161-C-T **
13480841-TG-A 11325165-TG-A **
13480854-T-A 11325178-T-A **
13480864-TC-T 11325188-TC-T **
13480890-A-T 11325214-A-T **
13486798-A-G 11331122-A-G **
13486816-G-T 11331140-G-T **
13486817-G-T 11331141-G-T **
13486840-C-T 11331164-C-T **
13486841-A-G 11331165-A-G **
13486846-C-T 11331170-C-T **
13521990-A-G 11366314-A-G **
13543350-G-T 11387674-G-T **
13601855-G-T 11446179-G-T **
13601860-G-T 11446184-G-T **
13643349-T-C 11487673-T-C **
13697846-T-A 11542170-T-A DYZ17 **
13697982-C-A 11542306-C-A DYZ17 **
13698547-G-C 11542871-G-C DYZ17 **
13698594-A-C 11542918-A-C DYZ17 **
13709529-G-A 11553853-G-A DYZ17 **
13710359-A-C 11554683-A-C DYZ17 **
11664239-T-C DYZ17 **
11668454-G-T DYZ17 **
11669015-C-A FGC77197 DYZ17 **
11669028-A-C DYZ17 **
11673150-A-G DYZ17 **
13857627-A-G 11736921-A-G DYZ17 **
13862554-C-A 11741848-C-A DYZ17 **
13880849-G-C 11760143-G-C **
13884256-C-T 11763550-C-T **
13907751-G-T 11787045-G-T **
13907814-G-T 11787108-G-T **
13907832-T-G 11787126-T-G **
13944637-T-G 11823931-T-G **
14000417-C-A 11879711-C-A **
14007460-C-A 11886754-C-A Y90008 **
14009550-C-A 11888844-C-A **
14052882-C-A 11932176-C-A **
14073933-G-C 11953227-G-C **
14158022-C-A 12037316-C-A **
14180967-A-T 12060261-A-T **
14311863-C-A 12191157-C-A Z18851 **
14529183-C-A 12417384-C-A **
14619686-C-A 12507884-C-A **
14660541-A-C 12548606-A-C **
14985259-A-G 12873327-A-G **
15092456-C-A 12980545-C-A **
15094002-A-T 12982090-A-T **
15279112-C-A 13167211-C-A **
15302617-G-A 13190716-G-A **
15391312-C-T 13279432-C-T **
15579488-A-C 13467608-A-C **
15605743-A-G 13493863-A-G **
15655547-C-A 13543667-C-A **
15745686-A-C 13633806-A-C **
15761930-G-T 13650050-G-T **
15831469-G-A 13719589-G-A FT143862 **
16018247-C-A 13906367-C-A **
16032305-T-G 13920425-T-G **
16044935-C-A 13933055-C-A **
16059455-C-A 13947575-C-A **
16070102-G-T 13958222-G-T **
16120012-C-CTT 14008132-C-CTT P8_Prx 10×T**
16214157-C-A 14102277-C-A **
16217916-G-T 14106036-G-T **
16298378-C-A 14186498-C-A **
16412370-A-C 14300490-A-C **
16607774-C-A 14495894-C-A **
16704508-A-C 14592628-A-C **
16952599-C-A 14840719-C-A **
17183457-C-A 15071577-C-A **
17315035-A-C 15203155-A-C **
17376618-G-T 15264738-G-T **
17385620-C-G 15273740-C-G **
17549594-C-A 15437714-C-A **
17567299-G-T 15455419-G-T FT144019 **
17657479-C-A 15545599-C-A **
17926529-T-C 15814649-T-C **
18015047-C-A 15903167-C-A P7_Dst **
18071497-C-G 15959617-C-G **
18242904-C-A 16131024-C-A **
18263619-G-A 16151739-G-A **
18378903-C-G 16267023-C-G P6_Prx **
18427762-T-A 16315882-T-A P6_Dst **
18522320-G-T 16410440-G-T P6_Dst **
18690125-C-A 16578245-C-A **
18747165-A-G 16635285-A-G **
18901163-T-C 16789283-T-C **
18933403-A-C 16821523-A-C **
18933412-A-C 16821532-A-C **
19043026-A-T 16931146-A-T **
19075606-A-T 16963726-A-T **
19111332-C-A 16999452-C-A **
19183812-TTC-T 17071932-TTC-T **
19218145-A-T 17106265-A-T **
19274821-C-A 17162941-C-A **
19340635-T-C 17228755-T-C **
19340644-A-C 17228764-A-C **
19477421-C-A 17365541-C-A **
19577638-A-T 17465758-A-T P5_Prx **
19623943-A-C 17512063-A-C P5_Prx **
20243796-C-A 18081910-C-A P5_Dst **
20736282-T-A 18574396-T-A P4_Prx **
20970848-C-A 18808962-C-A P4_Dst **
21049322-A-T 18887436-A-T **
21139660-G-T 18977774-G-T **
21323467-C-A 19161581-C-A Y138667 **
21346259-G-T 19184373-G-T **
21459931-C-A 19298045-C-A **
21459949-T-A 19298063-T-A **
21549315-G-C 19387429-G-C FT144270 **
21672007-A-T 19510121-A-T **
21691942-C-A 19530056-C-A **
21963697-A-C 19801811-A-C **
22241395-G-T 20079509-G-T DYZ19 **
22316408-G-T 20154522-G-T DYZ19 **
22316424-A-AG 20154538-A-AG DYZ19 **
22439520-G-T 20277634-G-T DYZ19 **
22439528-G-T 20277642-G-T DYZ19 **
22439542-C-G 20277656-C-G DYZ19 **
22484683-G-T 20322797-G-T DYZ19 **
22529967-C-A 20368081-C-A **
22529971-C-A 20368085-C-A **
22530874-A-C 20368988-A-C **
22614337-G-T 20452451-G-T **
22641373-A-C 20479487-A-C FT314619 **
22641397-C-A 20479511-C-A **
22665960-A-C 20504074-A-C **
22665961-A-G 20504075-A-G **
22775107-A-C 20613221-A-C **
23006974-T-C 20845088-T-C **
23037889-A-C 20876003-A-C **
23126749-A-G 20964863-A-G **
23127995-T-C 20966109-T-C **
23200581-A-G 21038695-A-G **
23204583-C-A 21042697-C-A **
23327341-G-A 21165455-G-A **
24148113-T-G 22001966-T-G P3_b1 **
24148141-T-G 22001994-T-G P3_b1 **
24292773-G-T 22146626-G-T P3_t1 **
24292791-A-G 22146644-A-G P3_t1 **
24292795-G-T 22146648-G-T P3_t1 **
24292806-T-G 22146659-T-G P3_t1 **
24836826-C-A 22690679-C-A P3_b2 **
24892955-T-C 22746808-T-C g1 **
25524612-A-T 23378465-A-T P1_gr1 **
25592767-T-G 23446620-T-G P1_gr1 **
25592783-G-T 23446636-G-T P1_gr1 **
25720324-G-A 23574177-G-A P1_b3 **
25986175-G-C 23840028-G-C P1_Y1 **
25986176-A-T 23840029-A-T P1_Y1 **
25986195-A-C 23840048-A-C P1_Y1 **
26148538-C-A 24002391-C-A P1_Y1 **
26242548-C-A 24096401-C-A P1_Y1 **
26242565-A-C 24096418-A-C P1_Y1 **
26242566-C-A 24096419-C-A P1_Y1 **
27636252-C-T 25490105-C-T P1_Y2 **
27653996-G-T 25507849-G-T P1_Y2 **
27791984-C-A 25645837-C-A P1_Y2 **
27815747-G-T 25669600-G-T P1_Y2 **
27842333-G-T 25696186-G-T P1_Y2 **
28516643-C-A 26370496-C-A **
28519742-C-A 26373595-C-A **
28640214-C-A 26494067-C-A **
56728098-G-T **
56822339-T-A **
56844260-C-G **
56855889-G-T **
56887229-C-T **
23002319-CTT-C,CT 20840433-CTT-C,CT 14×T***
13453171-T-C 11297495-T-C ***
13485693-A-T 11330017-A-T ***
10958390-A-T ***
13485702-C-T 11330026-C-T ***
21504024-G-T 19342138-G-T ***
23484335-C-A 21322449-C-A ***
22108852-C-A 19946966-C-A ***
13453881-T-G 11298205-T-G ***
9702941-C-A 9865332-C-A IR3_Prx ***
24363633-CTTT-C,CTT 22217486-CTTT-C,CTT 16×T***
13453207-T-G 11297531-T-G ***
13462117-A-G 11306441-A-G ***
19172826-G-T 17060946-G-T ***
18060031-CTT-C 15948151-CTT-C 11×T***
19308322-TAA-T 17196442-TAA-T 12×A***
15151502-CAAAAAAA-C 13039589-CAAAAAAA-C 23×A***
15279206-GT-G,GTT 13167305-GT-G,GTT 13×T***
13489518-T-A 11333842-T-A ***
56846302-G-T ***
8911923-G-T 9043882-G-T ***
10959286-T-C ***
10022998-C-A 10185389-C-A ***
56858185-A-G ***
11643697-T-C DYZ17 ***
2892552-TTTTTTTTTGA-T,TTTTTTTTGA 3024511-TTTTTTTTTGA-T,TTTTTTTTGA ***
4241579-C-A 4373538-C-A ***
7201884-A-G 7333843-A-G ***
7240719-T-C 7372678-T-C ***
8102450-CT-C 8234409-CT-C ***
9852679-A-G 10015070-A-G ***
10810543-C-A ***
10810544-T-A ***
10826888-C-CCTTTCCATTT ***
10988724-C-A ***
13258796-C-A 11103120-C-A ***
13454223-TTTCCATTCCATTCCATTCCATTCCATTCCA-T 11298547-TTTCCATTCCATTCCATTCCATTCCATTCCA-T 12×TTCCA***
13637547-G-A 11481871-G-A ***
11643695-A-T DYZ17 ***
11643716-ATGG-A DYZ17 ***
11643722-TTG-T DYZ17 ***
15477206-C-A 13365326-C-A ***
16181475-C-A 14069595-C-A ***
16279586-G-T 14167706-G-T ***
17239245-G-T 15127365-G-T ***
18753228-G-T 16641348-G-T ***
21905283-CAA-C,CAAA 19743397-CAA-C,CAAA 16×A***
22447734-G-C 20285848-G-C DYZ19 ***
23188699-A-G 21026813-A-G BY143663 ***
23577047-C-A 21415161-C-A ***
28804411-C-T 26658264-C-T ***
28818895-G-T 26672748-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.