Lamont

BigY2: 640393
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > b38:Y2:15199T>G > BY39763 > BY49898

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
640393		Manual
Edits
19732287-C-T 17620407-C-T P5_Prx A*
19828374-G-T 17716494-G-T P5_Prx A*
25914072-T-G 23767925-T-G P1_Y1 A*
8896507-AT-A 9028466-AT-A +
14276620-G-A 12155914-G-A M7625 YY+
21895134-GA-G 19733248-GA-G +
22277887-G-C 20116001-G-C DYZ19 *
17684311-C-A 15572431-C-A **
19926955-CTT-C 17815075-CTT-C P5_Prx 23×T**
15156704-C-CA 13044791-C-CA S3201 9×A**
22266410-C-G 20104524-C-G BY23241 DYZ19 **
4590046-T-C 4722005-T-C **
22266383-G-T 20104497-G-T FGC82952 DYZ19 **
22266423-T-G 20104537-T-G BY23243 DYZ19 **
7105069-C-T 7237028-C-T Z38939 **
13141362-C-T 10630848-C-T **
14153166-C-A 12032460-C-A **
22240506-C-A 20078620-C-A DYZ19 **
14216328-C-A 12095622-C-A **
25931647-G-A 23785500-G-A P1_Y1 **
3599484-T-C 3731443-T-C S15663FGC8368 **
14938630-G-A 12826705-G-A 19×A**
22240512-A-C 20078626-A-C DYZ19 **
13695477-A-T 11539801-A-T DYZ17 **
8140465-G-A 8272424-G-A **
10959771-T-A **
10958975-G-C **
10679065-A-T **
10993031-A-T **
15047609-C-T 12935700-C-T **
18328809-G-T 16216929-G-T P6_Prx **
20760071-T-G 18598185-T-G P4_Prx **
10808038-C-CTCCGA **
10824154-T-A **
10790689-C-A **
18329045-T-TG 16217165-T-TG P6_Prx **
17130136-C-A 15018256-C-A **
17994874-CA-C 15882994-CA-C P7_Prx 39×A**
2853600-C-A 2985559-C-A **
10993013-CCACTG-C **
10748018-T-G **
10748034-T-A **
10748044-T-C **
10975858-T-C **
10973250-C-CT **
10973259-C-T **
10973262-G-T **
10973274-G-C **
17549248-C-A 15437368-C-A **
14995166-C-A 12883251-C-A **
10876012-T-A **
4223384-C-A 4355343-C-A **
14470371-C-A 12349640-C-A **
23569926-C-A 21408040-C-A **
10912113-C-G **
10889793-T-C **
9702932-G-T 9865323-G-T IR3_Prx **
10688214-G-T **
10961383-C-G **
13696298-A-T 11540622-A-T DYZ17 **
10673398-GTTCCA-G **
10929986-T-C **
10764684-C-A **
21482757-C-A 19320871-C-A **
13938679-G-A 11817973-G-A **
23007401-G-T 20845515-G-T **
10937810-C-T **
26118892-C-A 23972745-C-A P1_Y1 **
10756069-C-T **
22352465-A-T 20190579-A-T DYZ19 **
14055011-C-A 11934305-C-A Y136507 **
12288301-CTTTT-C 19×T**
9019121-G-T 9181512-G-T **
9965510-G-T 10127901-G-T **
10841064-T-C **
10786470-C-A **
10788627-TCATTC-T **
10888710-C-T **
10985150-G-T **
14366455-C-A 12245750-C-A **
23881811-T-A 21719925-T-A **
10807995-G-C **
10884011-A-C **
10884012-T-C **
10692754-C-T **
9805117-C-A 9967508-C-A **
10888747-T-A **
56848131-C-A **
22266421-C-G 20104535-C-G DYZ19 **
22266444-G-A 20104558-G-A DYZ19 **
11022124-TC-T **
10937816-A-T **
10937817-C-T **
10937831-A-T **
10831537-G-T **
18736597-C-A 16624717-C-A **
10756106-C-T **
11008950-A-T **
11008965-A-C **
11008978-C-G **
10975838-TTCTAC-T **
11654972-C-A DYZ17 **
15767096-C-A 13655216-C-A **
11016267-A-C **
18873404-G-T 16761524-G-T **
10806395-C-G **
16689868-C-A 14577988-C-A **
2909065-TCA-T 3041024-TCA-T **
10962650-T-C **
16171322-C-A 14059442-C-A **
13460445-G-A 11304769-G-A **
9063634-A-C 9226025-A-C **
10983329-C-A **
10937642-C-T **
10921403-T-A **
10983896-ATTCCG-A **
10921126-C-CA **
10921128-T-TGCCC **
10784616-C-A **
11036012-C-T **
10976291-T-G **
10750788-C-G **
10750798-C-T **
10750803-C-G **
10750804-C-A **
7201940-C-A 7333899-C-A **
10764664-G-T **
10933646-C-A **
14471914-C-A 12351183-C-A **
23143645-C-A 20981759-C-A **
7172475-G-T 7304434-G-T FT19022 **
11034866-T-G **
13696249-C-G 11540573-C-G DYZ17 **
8901131-C-A 9033090-C-A **
28076518-CCTTCCTTTCTTT-C 25930371-CCTTCCTTTCTTT-C P1_Y2 **
10686286-C-T **
10807987-T-A **
10869311-C-A **
11654931-C-A DYZ17 **
8140461-C-A 8272420-C-A **
10804441-C-T **
10947072-A-C **
10939788-A-C **
11036032-C-G **
10764639-C-A **
10833062-C-A **
11654939-C-A FT219868 DYZ17 **
27792021-C-A 25645874-C-A P1_Y2 **
10767643-C-T **
10756092-T-A **
28545808-C-A 26399661-C-A **
10919543-G-A **
10940841-C-A **
3385284-C-A 3517243-C-A **
27792015-G-T 25645868-G-T P1_Y2 **
10931073-T-C **
10945195-G-A FT103463 **
27641487-C-A 25495340-C-A P1_Y2 **
7257219-C-A 7389178-C-A **
10912128-T-G **
14077929-C-A 11957223-C-A **
10907714-G-C **
14539638-C-A 12427839-C-A **
3407453-C-A 3539412-C-A **
27647706-C-A 25501559-C-A P1_Y2 **
3603367-C-A 3735326-C-A **
10840049-T-G **
22768210-C-A 20606324-C-A **
23648185-C-A 21486299-C-A **
13221869-G-C 11066193-G-C **
13453290-A-C 11297614-A-C **
10919534-T-G FT436544 **
2923103-C-A 3055062-C-A **
10937651-A-G **
13908301-C-A 11787595-C-A **
2991571-TATCAGC-T 3123530-TATCAGC-T **
2991620-G-T 3123579-G-T **
3033185-C-G 3165144-C-G FT103530 **
3075217-G-T 3207176-G-T **
3271800-T-G 3403759-T-G **
3276453-A-T 3408412-A-T **
3648699-C-A 3780658-C-A **
3688362-C-T 3820321-C-T **
3804760-AAT-A 3936719-AAT-A **
3952214-C-G 4084173-C-G **
3968030-C-A 4099989-C-A **
4026665-C-CT 4158624-C-CT 9×T**
4047366-C-A 4179325-C-A **
4105844-AT-A 4237803-AT-A **
4149174-C-A 4281133-C-A **
4255661-G-T 4387620-G-T **
4270701-A-G 4402660-A-G **
4278058-C-A 4410017-C-A **
4282912-C-A 4414871-C-A **
4389862-CT-C 4521821-CT-C 9×T**
4460176-C-A 4592135-C-A **
4466822-C-A 4598781-C-A **
4485588-C-A 4617547-C-A **
4721887-C-T 4853846-C-T **
4878834-C-A 5010793-C-A **
5124466-A-T 5256425-A-T **
5184170-T-G 5316129-T-G **
5200918-G-A 5332877-G-A **
5224723-G-A 5356682-G-A **
5569408-C-A 5701367-C-A **
5645417-C-A 5777376-C-A **
5688335-A-C 5820294-A-C **
5926734-C-T 6058693-C-T **
5991009-C-A 6122968-C-A FGC64852 **
6027444-C-A 6159403-C-A **
6148767-T-A 6280726-T-A IR3_Dst **
6355813-G-T 6487772-G-T **
6482487-G-T 6614446-G-T **
6490428-G-A 6622387-G-A **
6505707-C-A 6637666-C-A **
6514274-C-A 6646233-C-A **
6536145-C-A 6668104-C-A **
6756907-T-TCAAAAAAAA 6888866-T-TCAAAAAAAA **
6772349-C-A 6904308-C-A **
6773474-T-C 6905433-T-C **
7086678-C-A 7218637-C-A **
7091240-T-G 7223199-T-G **
7105090-T-G 7237049-T-G **
7105093-A-G 7237052-A-G **
7105095-C-G 7237054-C-G **
7105096-A-G 7237055-A-G **
7217446-C-A 7349405-C-A **
7302498-CTTTATTCCTTTACT-C 7434457-CTTTATTCCTTTACT-C **
7374382-G-A 7506341-G-A **
7438113-C-A 7570072-C-A **
8078731-A-C 8210690-A-C **
8556300-C-A 8688259-C-A **
8660401-C-A 8792360-C-A **
8849937-A-G 8981896-A-G **
9108876-G-T **
9110365-T-G **
9074031-C-A 9236422-C-A **
9509788-AT-A 9672179-AT-A **
9636617-A-C 9799008-A-C IR3_Prx **
9737247-A-C 9899638-A-C IR3_Prx **
9852681-C-A 10015072-C-A **
10023262-C-A 10185653-C-A **
10628537-A-C **
10628866-C-G **
10628867-A-T **
10658358-C-T **
10658373-C-T **
10658378-C-A **
10661983-C-A **
10677264-G-T **
10679054-C-G **
10679062-C-T **
10679070-T-C **
10679071-C-T **
10686160-T-G **
10687365-C-A **
10691178-A-T **
10755489-C-A **
10756072-C-T **
10756088-A-G **
10756824-C-CCA **
10756828-TCC-T **
10765067-A-T **
10765106-C-T **
10765122-A-G **
10767609-T-A **
10782568-G-C **
10782592-TA-T **
10799953-C-T **
10804416-T-C **
10804451-T-A **
10806355-C-T **
10806356-A-C **
10806376-T-G **
10808006-C-T **
10823976-C-A **
10824159-T-TTGCAC **
10828560-C-T **
10834119-C-A **
10834189-T-C **
10835592-C-A **
10839739-C-A **
10841026-C-CGATGT **
10841049-T-TACCAC **
10847207-C-A **
10850820-C-A **
10850967-C-A **
10869306-A-AGTATG **
10869315-G-A **
10869317-T-C **
10878960-A-C **
10884479-T-C **
10885324-C-A **
10886261-C-A **
10899763-G-C **
10899998-T-G **
10907705-C-G **
10910871-G-T **
10911026-A-G **
10912144-G-A **
10912722-A-T **
10919530-G-C **
10925160-C-A **
10931068-T-G **
10931080-T-C **
10931081-C-T **
10931084-G-T **
10931090-C-T FT437015 **
10933651-A-T **
10935829-C-A **
10937656-A-T **
10939784-T-A **
10941662-C-A **
10955972-T-G **
10959008-C-T **
10963190-C-A **
10969063-C-G **
10972969-A-G **
10973404-C-A **
10975515-C-A **
10981408-C-A **
10983603-C-A **
10983618-C-A **
10983630-T-G **
10984919-C-A **
10998816-C-A **
11006340-T-A **
11010938-C-A **
11011676-C-A **
11016264-T-C **
11016274-CACGAT-C **
11016304-C-T **
11034095-T-A **
11034668-CT-C **
11034674-A-C **
11034678-CGATTT-C **
11036116-ACTCT-A **
11037303-C-A **
13460510-A-G 11304834-A-G **
13575607-C-A 11419931-C-A **
13593623-T-G 11437947-T-G **
13707078-A-T 11551402-A-T DYZ17 **
13748280-A-T 11592604-A-T DYZ17 **
11654975-T-A DYZ17 **
11668247-G-A DYZ17 **
13865924-G-T 11745218-G-T DYZ17 **
13932522-T-G 11811816-T-G **
14097878-C-A 11977172-C-A **
14100115-C-A 11979409-C-A **
14128237-TC-T 12007531-TC-T **
14180187-C-A 12059481-C-A **
14263264-T-A 12142558-T-A **
14344263-C-A 12223558-C-A FT248938 **
14385430-C-A 12264726-C-A **
14530699-C-A 12418900-C-A **
14795666-GGCGA-G 12683737-GGCGA-G **
15221646-C-A 13109732-C-A **
15366233-G-T 13254353-G-T **
15381131-C-T 13269251-C-T **
15776175-G-T 13664295-G-T **
15803673-G-T 13691793-G-T **
15865995-A-C 13754115-A-C **
16037177-C-A 13925297-C-A **
16045053-GA-G 13933173-GA-G **
16232328-G-T 14120448-G-T **
16267284-G-A 14155404-G-A **
16426419-G-T 14314539-G-T **
16428162-G-T 14316282-G-T **
16620588-G-T 14508708-G-T **
16620611-C-T 14508731-C-T **
16623363-G-T 14511483-G-T **
16701729-G-T 14589849-G-T **
16765600-T-G 14653720-T-G **
16765608-T-G 14653728-T-G **
16777734-A-G 14665854-A-G **
16930452-G-T 14818572-G-T **
17090782-T-A 14978902-T-A **
17090787-C-A 14978907-C-A **
17165133-C-A 15053253-C-A **
17225899-C-A 15114019-C-A **
17254742-C-A 15142862-C-A **
17376979-C-A 15265099-C-A **
17479079-C-A 15367199-C-A **
17518771-G-T 15406891-G-T **
17571971-C-T 15460091-C-T **
17633156-C-G 15521276-C-G **
17718303-C-A 15606423-C-A **
18211054-A-G 16099174-A-G **
18568031-C-A 16456151-C-A **
18627607-A-C 16515727-A-C **
18660199-C-A 16548319-C-A **
18780319-C-T 16668439-C-T **
18955993-A-C 16844113-A-C **
19102874-G-A 16990994-G-A BZ2870 BY15820 **
19121917-T-G 17010037-T-G **
19135288-G-T 17023408-G-T **
19228858-G-T 17116978-G-T **
19296939-T-G 17185059-T-G **
19300254-T-G 17188374-T-G **
19517898-C-A 17406018-C-A **
19520862-AAAAAG-A 17408982-AAAAAG-A **
19555260-G-T 17443380-G-T **
20027996-A-T 17916116-A-T P5_Prx **
20511095-C-A 18349209-C-A P5_Dst **
20511149-C-A 18349263-C-A P5_Dst **
20511155-C-A 18349269-C-A P5_Dst **
20511157-C-A 18349271-C-A P5_Dst **
20756912-G-C 18595026-G-C P4_Prx **
20756924-T-A 18595038-T-A P4_Prx **
20943477-C-CTCTG 18781591-C-CTCTG P4_Dst 12×TG**
21116884-GACACT-G 18954998-GACACT-G **
21221180-C-A 19059294-C-A **
21280100-G-T 19118214-G-T **
21482727-A-T 19320841-A-T **
21522278-A-G 19360392-A-G FT370094 **
21969700-C-G 19807814-C-G FTB23410 **
22076263-G-T 19914377-G-T **
22164399-T-A 20002513-T-A **
22171487-G-A 20009601-G-A **
22240472-C-G 20078586-C-G DYZ19 **
22240484-C-G 20078598-C-G DYZ19 **
22240495-C-G 20078609-C-G DYZ19 **
22240498-G-C 20078612-G-C DYZ19 **
22426940-A-C 20265054-A-C DYZ19 **
22427002-T-A 20265116-T-A DYZ19 **
22457373-C-A 20295487-C-A DYZ19 **
22590703-T-C 20428817-T-C **
22624883-G-A 20462997-G-A **
22756445-A-T 20594559-A-T **
22756452-T-G 20594566-T-G **
22756460-T-C 20594574-T-C **
22756461-G-A 20594575-G-A **
22783158-GCAA-G 20621272-GCAA-G **
23009926-G-T 20848040-G-T **
23091666-T-G 20929780-T-G **
23096791-A-G 20934905-A-G **
23180991-A-T 21019105-A-T **
23204516-T-G 21042630-T-G **
23204523-A-T 21042637-A-T **
23446926-C-A 21285040-C-A **
23848245-T-C 21686359-T-C **
23875077-C-A 21713191-C-A **
24618870-T-TG 22472723-T-TG P3_t2 **
25864134-T-G 23717987-T-G P1_Y1 **
26970848-G-T 24824701-G-T P1_r4 **
27847762-G-GTT 25701615-G-GTT P1_Y2 **
28234469-G-T 26088322-G-T P1_b4 **
28469533-T-TG 26323386-T-TG **
28479083-C-A 26332936-C-A **
28616747-G-T 26470600-G-T **
28634759-T-A 26488612-T-A FGC52579 **
28758286-C-A 26612139-C-A **
28762462-C-A 26616315-C-A **
28764176-A-G 26618029-A-G **
28764179-C-T 26618032-C-T **
28764184-T-C 26618037-T-C **
56750078-A-T **
56750078-AG-A **
56848119-C-T **
56848126-T-G **
56848158-C-G **
56848191-T-A **
56849927-C-A **
56858847-G-T **
56870676-C-A **
23311571-ATT-A 21149685-ATT-A 15×T***
23360428-GTATTATTAT-G,GTAT 21198542-GTATTATTAT-G,GTAT 12×TAT***
3332233-T-TA 3464192-T-TA 10×A***
10959744-A-C FT438260 ***
2773691-TAA-T,TA 2905650-TAA-T,TA 19×A***
16305923-TCAAAAAA-T 14194043-TCAAAAAA-T ***
17441175-AATATATATATATAT-A 15329295-AATATATATATATAT-A 20×AT***
10937494-A-C,G ***
10995855-C-A,CA ***
11022973-A-T ***
10848931-C-A ***
13460471-A-G 11304795-A-G ***
7633307-C-A 7765266-C-A ***
21202529-C-A 19040643-C-A ***
23421043-AT-A,ATT 21259157-AT-A,ATT 22×T***
10797714-T-C ***
21884574-G-GAA 19722688-G-GAA 11×A***
56838641-C-A ***
13928809-C-A 11808103-C-A ***
6090595-C-A 6222554-C-A ***
6368893-G-T 6500852-G-T ***
6863818-CTTTTTTTT-C,CTTTTTT 6995777-CTTTTTTTT-C,CTTTTTT 21×T***
6889145-C-A 7021104-C-A BY10901 ***
10656322-T-G ***
10693375-ACAGCACC-A ***
10875748-T-G ***
10875756-C-A ***
10875767-A-T ***
10937676-A-T ***
10995801-T-A,C ***
11024303-C-A ***
13460470-G-A 11304794-G-A ***
13839771-G-T 11719065-G-T DYZ17 ***
13961912-T-C 11841206-T-C ***
14914672-CTTTTT-C,CTTTTTT 12802739-CTTTTT-C,CTTTTTT 17×T***
14997963-C-A 12886048-C-A ***
15406939-TAA-T,TAAA 13295059-TAA-T,TAAA 20×A***
15479942-CTTTTTTTTT-C 13368062-CTTTTTTTTT-C 21×T***
15876535-TAA-T,TAAA 13764655-TAA-T,TAAA 15×A***
16019489-G-T 13907609-G-T ***
16971270-G-A 14859390-G-A ***
17377501-C-A 15265621-C-A ***
17715093-C-A 15603213-C-A ***
22199511-C-A 20037625-C-A FT131916 ***
56828419-G-C ***
56848791-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual19620600-A-T17508720-A-T5A 5T