Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z46375 > DF106 > DF104 > DF105 > A223 > BY3339 > FGC35903 > FGC35910 > A5608

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
478219
22282613-G-T 20120727-G-T DYZ19 A*
28816699-A-G 26670552-A-G A*
21333267-C-A 19171381-C-A Y129235 YY+
22459389-GT-G 20297503-GT-G DYZ19 +
22459390-T-C 20297504-T-C BY43888 DYZ19 +
3545040-G-C 3676999-G-C BY57690 +
18082550-G-T 15970670-G-T Y128956 YY+
19482634-A-G 17370754-A-G Y128979 YY+
22460549-G-A 20298663-G-A BY220557 DYZ19 +
18365541-A-G 16253661-A-G BY55072 P6_Prx 20×TG*
18893312-G-GTGTA 16781432-G-GTGTA 6×TGTA*
14029916-A-T 11909210-A-T **
14184422-CAAAA-C 12063716-CAAAA-C 26×A**
13859102-T-A 11738396-T-A **
13859119-G-C 11738413-G-C **
14102054-C-A 11981348-C-A **
14042807-C-A 11922101-C-A **
13990270-C-A 11869564-C-A **
13999156-T-G 11878450-T-G **
13861002-A-G 11740296-A-G **
13902168-A-C 11781462-A-C **
13900010-C-A 11779304-C-A **
13893652-T-C 11772946-T-C **
13871417-A-C 11750711-A-C **
13861008-G-C 11740302-G-C **
14245138-C-A 12124432-C-A **
3436398-G-A 3568357-G-A L798 **
14384140-G-T 12263436-G-T **
15163394-T-G 13051480-T-G **
15758449-C-A 13646569-C-A **
15665757-C-A 13553877-C-A **
15558998-C-A 13447118-C-A **
15558141-C-A 13446261-C-A **
15498006-A-T 13386126-A-T **
15497997-TTG-T 13386117-TTG-T **
15321328-G-GTTT 13209446-G-GTTT 25×T**
15263581-T-A 13151671-T-A **
15031937-C-A 12920025-C-A **
13859069-G-A 11738363-G-A **
14911032-G-A 12799099-G-A **
14911031-A-C 12799098-A-C **
14701515-C-A 12589581-C-A **
14661678-C-A 12549743-C-A **
14609634-C-A 12497836-C-A 9×A**
14566673-G-A 12454873-G-A **
14475043-C-A 12354312-C-A **
14468810-C-A 12348079-C-A **
13859100-G-C 11738394-G-C **
11657945-A-C **
13859052-A-C 11738346-A-C **
10824547-C-A **
10944024-C-A **
10943987-C-A **
10935519-C-G **
10935512-C-G **
10927258-C-A **
10869399-C-T **
10826507-TC-A **
10824525-T-G **
10948583-G-A **
10820679-C-A **
10804865-C-T **
10771670-A-G **
10770603-C-A **
10770577-T-C **
10770214-T-G **
10761027-C-A **
10691368-A-T **
10948106-C-A **
10954057-A-T **
13859035-GAAACT-G 11738329-GAAACT-G **
11024755-T-G **
13859034-C-G 11738328-C-G **
13859029-G-C 11738323-G-C **
15790518-T-G 13678638-T-G **
11655091-C-A **
13713426-T-A 11557750-T-A **
13572255-T-G 11416579-T-G **
13289492-T-C 11133816-T-C **
11027361-CACTTA-C **
11014032-C-A **
10961409-T-TCCATGCCATC **
11013530-T-G **
11008021-T-C **
10995925-T-C **
10995911-C-A **
10995879-CTTTCCTTTCT-C **
10992928-C-A **
10987106-C-A **
10986653-N-T **
15762003-C-T 13650123-C-T **
16254007-C-A 14142127-C-A **
15831412-C-A 13719532-C-A **
21691543-C-A 19529657-C-A **
22833688-TC-T 20671802-TC-T **
22561417-C-A 20399531-C-A **
22514963-A-G 20353077-A-G **
22111358-C-A 19949472-C-A **
21946819-C-A 19784933-C-A **
21939737-A-C 19777851-A-C **
21747810-G-C 19585924-G-C **
21565871-G-A 19403985-G-A **
23034419-T-C 20872533-T-C **
21381918-C-A 19220032-C-A **
21371096-A-C 19209210-A-C **
21175776-ATC-A 19013890-ATC-A **
21111641-GA-G 18949755-GA-G **
21103169-C-A 18941283-C-A **
21090908-T-G 18929022-T-G **
21086159-A-C 18924273-A-C **
23034415-C-T 20872529-C-T **
23034426-G-T 20872540-G-T **
20731421-A-T 18569535-A-T P4_Prx **
24485933-C-A 22339786-C-A **
28776777-C-A 26630630-C-A **
28462899-C-A 26316752-C-A **
27603689-C-T 25457542-C-T P1_Y2 **
27127602-A-T 24981455-A-T P1_g3 14×TTTC**
25375689-G-T 23229542-G-T P2_r2 **
24751749-A-G 22605602-A-G P3_b2 **
24512830-G-T 22366683-G-T **
23831114-C-A 21669228-C-A **
23034462-T-G 20872576-T-G **
23789859-A-C 21627973-A-C **
23789848-C-A 21627962-C-A **
23516413-T-A 21354527-T-A **
23461110-C-A 21299224-C-A **
23416694-C-A 21254808-C-A **
23272281-A-C 21110395-A-C **
23034491-CGTTTT-C 20872605-CGTTTT-C **
23034482-G-A 20872596-G-A **
20803091-T-C 18641205-T-C P4_Gap **
20731416-A-T 18569530-A-T P4_Prx **
15972127-C-A 13860247-C-A **
16831012-T-G 14719132-T-G **
17376617-G-T 15264737-G-T **
17375500-C-A 15263620-C-A **
17362722-C-A 15250842-C-A **
17333913-TTTTC-T 15222033-TTTTC-T **
17222784-G-A 15110904-G-A FGC64270 **
16993785-C-A 14881905-C-A **
16912736-C-A 14800856-C-A **
16745310-A-T 14633430-A-T **
17801976-C-A 15690096-C-A **
16506682-G-A 14394802-G-A **
16467573-A-G 14355693-A-G **
16412471-C-T 14300591-C-T **
16254011-A-T 14142131-A-T **
10688918-T-A **
16254004-T-A 14142124-T-A **
16249073-G-A 14137193-G-A **
16011800-C-A 13899920-C-A **
17638249-C-T 15526369-C-T **
18218922-CCTAAAA-C 16107042-CCTAAAA-C **
19884328-T-A 17772448-T-A P5_Prx **
18986046-C-A 16874166-C-A **
19884324-C-A 17772444-C-A P5_Prx **
19581331-G-T 17469451-G-T P5_Prx **
19581315-G-T 17469435-G-T P5_Prx **
19581301-G-T 17469421-G-T P5_Prx **
19411744-C-A 17299864-C-A **
19389636-C-T 17277756-C-T **
19044768-C-A 16932888-C-A **
18871633-GAGAAAGAA-G 16759753-GAGAAAGAA-G 8×AGAA**
18306575-T-G 16194695-T-G P6_Prx **
18858534-C-A 16746654-C-A **
18858528-C-A 16746648-C-A **
18840680-A-G 16728800-A-G **
18812166-T-G 16700286-T-G **
18806044-C-A 16694164-C-A 19×T**
18443540-CAT-C 16331660-CAT-C P6_Dst **
18421671-G-A 16309791-G-A Y101983 P6_Gap **
18306582-A-C 16194702-A-C P6_Prx **
10691362-CA-C **
10828941-T-A **
10669067-T-TATTCC **
7633307-C-A 7765266-C-A **
13213273-C-A 11057597-C-A **
10861403-A-C **
14007281-C-A 11886575-C-A **
10804859-G-T **
20620934-C-A 18459048-C-A P4_Prx **
9700819-G-T 9863210-G-T IR3_Prx **
10861383-C-T **
13857669-C-A 11736963-C-A **
10861376-A-T **
8092199-T-G 8224158-T-G **
21987312-C-A 19825426-C-A **
10961421-C-A **
10764233-G-T **
13859107-C-A 11738401-C-A **
24363633-C-T 22217486-C-T 16×T**
3626449-C-A 3758408-C-A **
10973632-C-T **
56841790-C-T **
13480548-C-T 11324872-C-T **
7991017-C-A 8122976-C-A **
16831025-T-G 14719145-T-G **
15109723-G-T 12997810-G-T **
10804875-G-T **
10779220-G-T **
10959747-C-A **
21206903-C-A 19045017-C-A **
6784559-T-C 6916518-T-C **
24403797-C-A 22257650-C-A **
28514860-C-A 26368713-C-A **
22427532-C-A 20265646-C-A DYZ19 **
10654198-T-C **
10948092-G-T **
15105123-C-A 12993211-C-A **
10943975-C-A **
28650087-C-A 26503940-C-A **
56841797-T-G **
56841787-G-T **
5264236-C-T 5396195-C-T **
18443590-C-CAT 16331710-C-CAT P6_Dst **
10807380-C-A **
10807377-T-C **
6310827-A-T 6442786-A-T IR3_Dst **
10828632-C-A **
10986670-N-G **
7608483-C-A 7740442-C-A **
10987536-C-T **
18925085-C-A 16813205-C-A **
23034501-G-A 20872615-G-A **
13859120-C-G 11738414-C-G **
18970320-CA-C 16858440-CA-C 28×A**
13809823-GGACTT-G 11689117-GGACTT-G **
13859080-G-A 11738374-G-A Z22041 **
58987924-T-C 56841777-T-C **
23392176-T-C 21230290-T-C CTS9881Y7739 FGC32678 **
17956056-CTTT-C 15844176-CTTT-C 13×T**
10971913-ATTC-A **
56841773-G-A **
10804891-G-A **
56841770-A-G **
56841754-A-C **
11668392-C-A **
6784531-T-G 6916490-T-G **
21402181-CTTTTTT-C 19240295-CTTTTTT-C 34×T**
23350660-C-A 21188774-C-A **
6310826-C-A 6442785-C-A IR3_Dst **
10864653-G-A **
13480498-T-G 11324822-T-G **
16075431-C-A 13963551-C-A **
10826751-C-A **
15107572-C-A 12995659-C-A **
10927257-G-C **
28605446-C-A 26459299-C-A **
10896330-T-G **
56851223-C-A **
5863988-C-A 5995947-C-A **
22893486-T-C 20731600-T-C **
56828415-A-C **
6784550-T-C 6916509-T-C **
7609394-A-C 7741353-A-C **
7374141-TC-T 7506100-TC-T **
7333063-A-G 7465022-A-G **
7298843-C-A 7430802-C-A **
7133992-C-A 7265951-C-A **
6826604-T-G 6958563-T-G **
6784560-G-A 6916519-G-A **
6784536-T-C 6916495-T-C **
7717832-C-A 7849791-C-A **
6672319-C-A 6804278-C-A **
6476715-C-A 6608674-C-A **
6090514-C-A 6222473-C-A **
5886317-C-T 6018276-C-T **
5534955-AT-A 5666914-AT-A **
5264242-T-C 5396201-T-C **
5264241-A-T 5396200-A-T **
7695743-G-A 7827702-G-A **
7894593-C-A 8026552-C-A **
5264218-G-T 5396177-G-T **
9079350-G-T 9241741-G-T **
10652859-C-A **
9965652-G-T 10128043-G-T **
9958818-A-G 10121209-A-G **
9836886-GTGTTTT-G 9999277-GTGTTTT-G **
9807807-G-T 9970198-G-T **
9436979-T-G 9599370-T-G **
9082335-C-A 9244726-C-A **
9113310-C-A **
8069986-T-A 8201945-T-A M4145 **
8746424-G-A 8878383-G-A **
8741853-T-G 8873812-T-G **
8673103-C-A 8805062-C-A **
8379637-C-G 8511596-C-G **
8283715-G-A 8415674-G-A **
8172595-C-A 8304554-C-A **
8096653-G-T 8228612-G-T **
5264237-T-A 5396196-T-A **
7087850-C-A 7219809-C-A **
2817156-T-C 2949115-T-C **
4498447-C-A 4630406-C-A **
2885883-T-G 3017842-T-G **
3080418-G-T 3212377-G-T **
3103539-G-T 3235498-G-T **
3218333-A-T 3350292-A-T **
3594005-T-C 3725964-T-C **
2785313-G-A 2917272-G-A **
4213918-C-A 4345877-C-A **
2668215-C-A 2800174-C-A **
4213969-C-A 4345928-C-A **
10824506-C-A **
3852292-C-A 3984251-C-A **
5113485-C-G 5245444-C-G **
4533759-A-G 4665718-A-G **
4602889-C-A 4734848-C-A **
5166088-C-A 5298047-C-A **
8706807-C-A 8838766-C-A **
15821580-C-A 13709700-C-A ***
19302695-G-T 17190815-G-T ***
8832772-A-AGT 8964731-A-AGT ***
28531534-C-A 26385387-C-A ***
4302195-C-A 4434154-C-A ***
19294883-C-A 17183003-C-A ***
22954465-TA-T 20792579-TA-T ***
23040157-TA-T,TAA 20878271-TA-T,TAA 17×A***
22725951-C-A 20564065-C-A ***
8831009-CTCTT-C 8962968-CTCTT-C ***
8661368-C-A 8793327-C-A ***
10653636-T-C ***
8224155-A-AAAAT 8356114-A-AAAAT 11×AAAT***
18614499-C-A 16502619-C-A ***
15379496-C-T 13267616-C-T ***
7414277-C-CA 7546236-C-CA 27×A***
14960448-A-G 12848523-A-G ***
14692461-C-A 12580527-C-A ***
9231571-C-T 9393962-C-T ***
23576634-C-A 21414748-C-A ***
23649302-C-A 21487416-C-A ***
15663087-TCTTGCTTTTCTAGTTCCTTAAGATGC-T 13551207-TCTTGCTTTTCTAGTTCCTTAAGATGC-T ***
22215331-C-A 20053445-C-A ***
9730895-T-C 9893286-T-C IR3_Prx ***
6910435-CTT-C,CTTT 7042394-CTT-C,CTTT 16×T***
23841388-TA-T 21679502-TA-T ***
9112011-T-TA 9274402-T-TA 13×A***
24502193-C-A 22356046-C-A ***
17576094-A-G 15464214-A-G ***
21468464-C-A 19306578-C-A ***
8321435-CT-C,CTTT 8453394-CT-C,CTTT 15×T***
16960102-C-A 14848222-C-A ***
19422943-C-A 17311063-C-A ***
15041907-C-A 12929997-C-A ***
21128259-TAAA-T,TAA 18966373-TAAA-T,TAA 18×A***
11665804-G-A ***
18897105-C-A 16785225-C-A ***
24242331-CAA-C 22096184-CAA-C P3_b1 16×A***
17052605-C-A 14940725-C-A ***
7254587-C-A 7386546-C-A ***
17139638-C-A 15027758-C-A ***
7203433-C-A 7335392-C-A ***
14879785-ATT-A 12767855-ATT-A 11×T***
17386774-TAA-T,TAAA 15274894-TAA-T,TAAA 15×A***
17951167-A-G 15839287-A-G ***
17869589-CCCTAT-C 15757709-CCCTAT-C ***
19504001-CTTTT-C 17392121-CTTTT-C 13×T***
13404789-C-A 11249113-C-A ***
15980721-T-TAAA 13868841-T-TAAA 17×A***
9847289-A-ATT 10009680-A-ATT 28×T***
18679925-CAAAAAAAAA-C 16568045-CAAAAAAAAA-C 25×A***
13457733-T-C 11302057-T-C ***
7922215-C-A 8054174-C-A ***
27883606-C-A 25737459-C-A P1_Y2 ***
8289354-TA-T 8421313-TA-T 8×A***
56836511-C-A ***
14461436-C-A 12340709-C-A ***
7269610-CTTTTTT-C,CTT 7401569-CTTTTTT-C,CTT 22×T***
7622130-C-A 7754089-C-A ***
15325192-C-A 13213310-C-A ***
14424169-G-T 12303444-G-T ***
16620525-G-T 14508645-G-T ***
16666240-C-A 14554360-C-A ***
13236828-T-G 11081152-T-G ***
18832823-C-A 16720943-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 478219906339774163107336356
Used in age calculations906339774163107336356
Counts of SNPs33
Variant counts last updated 2019-05-11 10:42:26.



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