Baker

BigY2: 429278

Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2647 > L460 > M436 > M223 > CTS10057 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY2
429278
hg19:Y:6180851-C-T hg38:Y:6312810-C-T IR3_Dst A*
hg19:Y:13819990-G-GACCAC hg38:Y:11699284-G-GACCAC DYZ17 A*
hg19:Y:13819995-G-T hg38:Y:11699289-G-T DYZ17 A*
hg19:Y:6325658-T-A hg38:Y:6457617-T-A IR3_Dst A*
hg19:Y:13687217-G-A hg38:Y:11531541-G-A DYZ17 A*
hg19:Y:18282064-A-C hg38:Y:16170184-A-C P6_Prx A*
hg19:Y:19853175-C-T hg38:Y:17741295-C-T P5_Prx A*
hg19:Y:25521902-A-T hg38:Y:23375755-A-T P1_gr1 A*
hg19:Y:28817380-C-G hg38:Y:26671233-C-G A*
hg19:Y:28817713-C-T hg38:Y:26671566-C-T A*
hg19:Y:23954924-C-A hg38:Y:21808777-C-A FGC24051 +
hg19:Y:7660462-T-C hg38:Y:7792421-T-C Y13442 YY+
hg19:Y:8250283-C-T hg38:Y:8382242-C-T BY71142 YY+
hg19:Y:8880568-C-G hg38:Y:9012527-C-G Y13444 Y+
hg19:Y:8989592-C-G hg38:Y:9151983-C-G BY77024 Y+
hg19:Y:13466642-G-T hg38:Y:11310966-G-T BY85740 +
hg19:Y:13599761-C-A hg38:Y:11444085-C-A BY45202 +
hg19:Y:13688397-G-C hg38:Y:11532721-G-C BY88487 DYZ17 +
hg19:Y:14318006-CA-C hg38:Y:12197300-CA-C +
hg19:Y:14394771-G-A hg38:Y:12274067-G-A Y13037 PH1204 YY+
hg19:Y:14843063-G-A hg38:Y:12731129-G-A Y13529 YY+
hg19:Y:15110158-G-T hg38:Y:12998245-G-T BY99747 YY+
hg19:Y:15951900-TTGTGTG-T hg38:Y:13840020-TTGTGTG-T 13×TG+
hg19:Y:17750683-T-C hg38:Y:15638803-T-C BY117127 YY+
hg19:Y:17794032-CCTAT-C hg38:Y:15682152-CCTAT-C +
hg19:Y:18074485-G-A hg38:Y:15962605-G-A Y13530 YY+
hg19:Y:18171212-A-G hg38:Y:16059332-A-G PH3739 Y13531 YY+
hg19:Y:19229265-T-A hg38:Y:17117385-T-A BY127471 YY+
hg19:Y:19545365-C-T hg38:Y:17433485-C-T Y13533 YY+
hg19:Y:20830530-C-T hg38:Y:18668644-C-T P4_Gap +
hg19:Y:21659139-C-T hg38:Y:19497253-C-T PH4863 Y13438 YY+
hg19:Y:21909818-T-C hg38:Y:19747932-T-C BY136421 YY+
hg19:Y:22230023-A-C hg38:Y:20068137-A-C BY45203 DYZ19 +
hg19:Y:22470708-A-C hg38:Y:20308822-A-C BY45204 DYZ19 +
hg19:Y:22595031-C-T hg38:Y:20433145-C-T Y13440 YY+
hg19:Y:23549293-G-A hg38:Y:21387407-G-A Y4926 FGC17399 YY+
hg19:Y:24003978-G-A hg38:Y:21857831-G-A Y13441 Y+
hg19:Y:28090478-T-C hg38:Y:25944331-T-C BY227085 P1_Y2 +
hg38:Y2:19467-T-C +
hg19:Y:16786213-CT-C,CTT hg38:Y:14674333-CT-C,CTT 22×T***
hg19:Y:13464415-C-G hg38:Y:11308739-C-G FT41991 *
hg19:Y:14561285-G-T hg38:Y:12449486-G-T **
hg19:Y:26084860-TTTATTA-T hg38:Y:23938713-TTTATTA-T P1_Y1 10×TTA**
hg19:Y:13460678-C-A hg38:Y:11305002-C-A **
hg19:Y:17284532-CTTTTTTTT-C hg38:Y:15172652-CTTTTTTTT-C 21×T**
hg38:Y:10797686-C-G **
hg38:Y:11643763-GGAA-G DYZ17 **
hg19:Y:23831278-TGA-T hg38:Y:21669392-TGA-T **
hg38:Y:10840798-T-A **
hg38:Y:10895795-C-T **
hg19:Y:13859431-A-T hg38:Y:11738725-A-T DYZ17 **
hg19:Y:13859415-G-A hg38:Y:11738709-G-A DYZ17 **
hg19:Y:13859418-T-TA hg38:Y:11738712-T-TA DYZ17 **
hg19:Y:13859419-G-GAAAA hg38:Y:11738713-G-GAAAA DYZ17 **
hg19:Y:13859423-T-C hg38:Y:11738717-T-C DYZ17 **
hg38:Y:11020790-C-A **
hg38:Y:10770318-T-C **
hg38:Y:10770330-C-CCACAA **
hg38:Y:10669490-A-T **
hg38:Y:10669537-T-G **
hg38:Y:10747003-CAT-C **
hg38:Y:10790219-C-A **
hg38:Y:10780639-C-T **
hg38:Y:11022874-T-C **
hg19:Y:19966638-GGAA-G hg38:Y:17854758-GGAA-G P5_Prx 6×GAA**
hg38:Y:10849763-C-A FT434030 **
hg38:Y:10849766-G-T **
hg19:Y:27971770-G-A hg38:Y:25825623-G-A P1_Y2 **
hg38:Y:11025034-A-G **
hg38:Y:11022869-T-C **
hg38:Y:10792449-T-C **
hg38:Y:10792450-T-A **
hg19:Y:27862583-AGG-A hg38:Y:25716436-AGG-A P1_Y2 **
hg19:Y:8974064-A-C hg38:Y:9136455-A-C **
hg19:Y:4243713-C-A hg38:Y:4375672-C-A FGC34398 **
hg38:Y:10967519-A-T **
hg19:Y:13194717-T-G hg38:Y:11039041-T-G **
hg38:Y:10781074-T-C **
hg38:Y:10785279-A-ACTCTG **
hg38:Y:10958858-T-C **
hg38:Y:10958879-T-C **
hg38:Y:10845965-A-C **
hg19:Y:13215509-C-A hg38:Y:11059833-C-A **
hg19:Y:14561290-T-C hg38:Y:12449491-T-C **
hg19:Y:14561298-T-C hg38:Y:12449499-T-C **
hg38:Y:10980725-A-T **
hg38:Y:10630856-C-A **
hg19:Y:27757817-C-A hg38:Y:25611670-C-A BY26443 P1_Y2 **
hg38:Y:10964764-A-G **
hg38:Y:10952552-C-T **
hg19:Y:5249235-C-A hg38:Y:5381194-C-A **
hg38:Y:56830135-CTCTTT-C **
hg38:Y:10895818-T-G **
hg19:Y:21091068-AAAT-A hg38:Y:18929182-AAAT-A **
hg19:Y:27637294-C-A hg38:Y:25491147-C-A P1_Y2 **
hg38:Y:10763856-G-T **
hg38:Y:11658257-C-A DYZ17 **
hg38:Y:10776152-C-A **
hg38:Y:10776154-C-G **
hg38:Y:10785304-A-ACTCTG **
hg38:Y:56830071-TGCA-T **
hg38:Y:10989865-C-T **
hg19:Y:28773983-C-A hg38:Y:26627836-C-A **
hg19:Y:10029288-C-A hg38:Y:10191679-C-A **
hg38:Y:10691212-C-A **
hg19:Y:9956364-T-TAA hg38:Y:10118755-T-TAA 16×A**
hg38:Y:10873133-C-T **
hg38:Y:56830087-T-A **
hg38:Y:10836493-C-A **
hg19:Y:13643742-C-A hg38:Y:11488066-C-A **
hg38:Y:10977582-C-A **
hg38:Y:10819418-C-T FT432579 **
hg38:Y:10748040-C-G **
hg19:Y:19071431-T-G hg38:Y:16959551-T-G **
hg19:Y:19926999-G-T hg38:Y:17815119-G-T P5_Prx **
hg19:Y:13839810-G-C hg38:Y:11719104-G-C DYZ17 **
hg38:Y:10987828-CCA-TGTTATT **
hg38:Y:10669501-T-TG **
hg38:Y:10669504-CA-T **
hg38:Y:10669518-C-A **
hg38:Y:10878340-A-C **
hg38:Y:10887993-A-T **
hg19:Y:14593007-C-A hg38:Y:12481207-C-A **
hg38:Y:10849829-C-T **
hg38:Y:10955242-C-A **
hg19:Y:5635244-GT-G hg38:Y:5767203-GT-G **
hg19:Y:13503515-A-G hg38:Y:11347839-A-G FGC33904 **
hg38:Y:10781103-G-A **
hg19:Y:14561265-G-A hg38:Y:12449466-G-A **
hg38:Y:10964567-C-A **
hg38:Y:56828268-T-A **
hg19:Y:14823431-C-A hg38:Y:12711498-C-A **
hg19:Y:7152755-T-C hg38:Y:7284714-T-C **
hg19:Y:7152756-G-A hg38:Y:7284715-G-A **
hg19:Y:7152761-C-G hg38:Y:7284720-C-G **
hg19:Y:2660546-ATTT-A hg38:Y:2792505-ATTT-A 14×T**
hg19:Y:2845851-AAT-A hg38:Y:2977810-AAT-A **
hg19:Y:3953804-G-T hg38:Y:4085763-G-T FT78003 **
hg19:Y:4439638-C-T hg38:Y:4571597-C-T FT39047 **
hg19:Y:4703480-C-A hg38:Y:4835439-C-A **
hg19:Y:5365745-C-A hg38:Y:5497704-C-A **
hg19:Y:5976859-C-A hg38:Y:6108818-C-A Y31742 **
hg19:Y:5976860-T-G hg38:Y:6108819-T-G **
hg19:Y:6759292-A-C hg38:Y:6891251-A-C **
hg19:Y:7201598-G-T hg38:Y:7333557-G-T **
hg19:Y:7269593-C-T hg38:Y:7401552-C-T **
hg19:Y:7670267-G-A hg38:Y:7802226-G-A Y13443 **
hg19:Y:8409307-A-G hg38:Y:8541266-A-G **
hg38:Y:9108560-T-G **
hg19:Y:9499516-A-G hg38:Y:9661907-A-G **
hg19:Y:10057489-A-G hg38:Y:10219880-A-G **
hg38:Y:10630864-T-A **
hg38:Y:10652441-C-A **
hg38:Y:10665565-C-A **
hg38:Y:10669165-T-G **
hg38:Y:10689801-A-T **
hg38:Y:10747965-CAATTG-C **
hg38:Y:10747982-A-T **
hg38:Y:10747983-T-A **
hg38:Y:10747989-T-A **
hg38:Y:10748015-C-G **
hg38:Y:10754227-T-C **
hg38:Y:10754254-G-A **
hg38:Y:10754266-T-A **
hg38:Y:10754267-T-C **
hg38:Y:10754268-T-C **
hg38:Y:10754304-A-C FT429750 **
hg38:Y:10756249-C-A **
hg38:Y:10756349-T-G **
hg38:Y:10781054-T-A **
hg38:Y:10781072-C-T **
hg38:Y:10788055-T-G **
hg38:Y:10795560-A-T **
hg38:Y:10840794-C-A **
hg38:Y:10840799-T-A **
hg38:Y:10849767-A-G **
hg38:Y:10849797-CATTTCT-C **
hg38:Y:10849813-T-C **
hg38:Y:10849814-A-AC **
hg38:Y:10849835-C-T **
hg38:Y:10849849-C-G **
hg38:Y:10867922-T-G **
hg38:Y:10880572-C-T **
hg38:Y:10888611-A-T **
hg38:Y:10888637-C-A **
hg38:Y:10892854-CCTATT-C **
hg38:Y:10952554-C-G **
hg38:Y:10952569-C-T **
hg38:Y:10954513-T-G **
hg38:Y:10959786-A-T **
hg38:Y:10959792-C-T FT438264 **
hg38:Y:10964566-C-A **
hg38:Y:10964773-A-ACTCCC **
hg38:Y:10964796-C-T **
hg38:Y:10964829-T-A **
hg38:Y:10964830-T-TCCGCA **
hg38:Y:10964854-C-A **
hg38:Y:10964858-A-C **
hg38:Y:10964862-C-A **
hg38:Y:10967511-T-C **
hg38:Y:10982218-C-G **
hg38:Y:10997085-GAATCC-G **
hg38:Y:11025548-C-A **
hg38:Y:11037965-C-A **
hg19:Y:13453346-T-G hg38:Y:11297670-T-G **
hg19:Y:13460193-G-A hg38:Y:11304517-G-A **
hg19:Y:13623695-G-T hg38:Y:11468019-G-T **
hg19:Y:13705140-G-A hg38:Y:11549464-G-A DYZ17 **
hg19:Y:13865958-C-A hg38:Y:11745252-C-A DYZ17 **
hg19:Y:13929804-A-C hg38:Y:11809098-A-C **
hg19:Y:14490723-C-A hg38:Y:12369992-C-A **
hg19:Y:14539625-C-T hg38:Y:12427826-C-T **
hg19:Y:14561275-A-C hg38:Y:12449476-A-C **
hg19:Y:15468301-C-G hg38:Y:13356421-C-G **
hg19:Y:15850966-A-T hg38:Y:13739086-A-T **
hg19:Y:16057312-T-C hg38:Y:13945432-T-C **
hg19:Y:16186513-A-C hg38:Y:14074633-A-C **
hg19:Y:16558157-A-G hg38:Y:14446277-A-G A3409 **
hg19:Y:16614754-T-A hg38:Y:14502874-T-A **
hg19:Y:16679099-ATTTTTTTT-A hg38:Y:14567219-ATTTTTTTT-A 25×T**
hg19:Y:17448524-C-A hg38:Y:15336644-C-A **
hg19:Y:17500241-T-C hg38:Y:15388361-T-C **
hg19:Y:17597150-C-A hg38:Y:15485270-C-A **
hg19:Y:18190311-A-T hg38:Y:16078431-A-T **
hg19:Y:18654806-T-C hg38:Y:16542926-T-C Y13532 **
hg19:Y:18965952-C-G hg38:Y:16854072-C-G **
hg19:Y:19304684-C-G hg38:Y:17192804-C-G **
hg19:Y:19508281-C-A hg38:Y:17396401-C-A **
hg19:Y:19547810-C-A hg38:Y:17435930-C-A **
hg19:Y:20073810-A-T hg38:Y:17961930-A-T P5_Dst **
hg19:Y:20778707-C-A hg38:Y:18616821-C-A P4_Prx **
hg19:Y:21177211-GTTTT-G hg38:Y:19015325-GTTTT-G 19×T**
hg19:Y:21361882-A-C hg38:Y:19199996-A-C **
hg19:Y:21828068-C-T hg38:Y:19666182-C-T Y13439 **
hg19:Y:23199754-C-T hg38:Y:21037868-C-T FT240726 **
hg19:Y:23243051-C-A hg38:Y:21081165-C-A **
hg19:Y:23742198-A-C hg38:Y:21580312-A-C **
hg19:Y:24409137-A-G hg38:Y:22262990-A-G **
hg19:Y:24445406-A-C hg38:Y:22299259-A-C **
hg38:Y:56698522-G-T **
hg38:Y:56861765-G-T **
hg38:Y2:10951-A-G **
hg19:Y:58974061-C-G hg38:Y:56827914-C-G ***
hg19:Y:13869152-A-T hg38:Y:11748446-A-T DYZ17 ***
hg38:Y:11643709-G-A DYZ17 ***
hg38:Y:11643736-A-T DYZ17 ***
hg38:Y:11643796-A-T DYZ17 ***
hg19:Y:8452245-T-A hg38:Y:8584204-T-A ***
hg38:Y:10744293-A-G ***
hg19:Y:27546676-TA-T hg38:Y:25400529-TA-T P1_Y2 13×A***
hg38:Y:56829657-ACTGCA-A,ACAGCG ***
hg38:Y:10689011-T-G ***
hg38:Y:10689015-T-C FT429125 ***
hg19:Y:18738674-C-A hg38:Y:16626794-C-A ***
hg38:Y:10801682-C-A ***
hg38:Y:56830286-T-C ***
hg19:Y:7938161-GAA-G hg38:Y:8070120-GAA-G 15×A***
hg38:Y:10987888-C-T ***
hg19:Y:16018283-TA-T hg38:Y:13906403-TA-T 10×A***
hg19:Y:15479942-CTTTTTT-C hg38:Y:13368062-CTTTTTT-C 21×T***
hg19:Y:2892542-ATTT-A,ATT hg38:Y:3024501-ATTT-A,ATT 18×T***
hg38:Y:10689024-ATTCCAT-A ***
hg38:Y:56827897-TCAAATC-T ***
hg38:Y:10878270-A-ACTCTG,G ***
hg19:Y:8108356-CAAA-C hg38:Y:8240315-CAAA-C 15×A***
hg38:Y:56830270-T-G ***
hg19:Y:17004633-GA-G hg38:Y:14892753-GA-G 9×A***
hg19:Y:14276423-TA-T,TAA hg38:Y:12155717-TA-T,TAA 13×A***
hg19:Y:20826397-CTTTT-C,CTT hg38:Y:18664511-CTTTT-C,CTT P4_Gap 17×T***
hg19:Y:2696439-G-T hg38:Y:2828398-G-T ***
hg19:Y:3706801-G-A hg38:Y:3838760-G-A ***
hg19:Y:4138575-G-T hg38:Y:4270534-G-T ***
hg38:Y:10744296-C-A ***
hg38:Y:10801683-A-AATCCG ***
hg38:Y:10801703-A-ATTATT ***
hg38:Y:10805665-C-T ***
hg38:Y:10977077-C-CCTCTA ***
hg19:Y:13801052-T-C hg38:Y:11680346-T-C DYZ17 ***
hg19:Y:13823263-G-A hg38:Y:11702557-G-A FT109140 DYZ17 ***
hg19:Y:13842701-T-C hg38:Y:11721995-T-C DYZ17 ***
hg19:Y:14604612-G-T hg38:Y:12492814-G-T ***
hg19:Y:15385800-C-A hg38:Y:13273920-C-A ***
hg19:Y:15799392-C-A hg38:Y:13687512-C-A ***
hg19:Y:16735170-C-A hg38:Y:14623290-C-A ***
hg19:Y:17914264-A-G hg38:Y:15802384-A-G ***
hg19:Y:19128785-A-G hg38:Y:17016905-A-G ***
hg19:Y:23046192-G-T hg38:Y:20884306-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 429278901744674487557377935
Used in age calculations901744674487557377935
Counts of SNPs1516
Variant counts last updated 2026-02-12 02:40:25.


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