Griffin
BigY2: 666904MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 666904 |
---|---|---|---|---|---|---|---|---|
26383340-C-CT | 24237193-C-CT | P1_Y1 | 16×T | A* | ||||
23654702-A-G | 21492816-A-G | BY147106 | Y | + | ||||
8365146-CAG-C | 8497105-CAG-C | + | ||||||
23269423-C-A | 21107537-C-A | BY144248 | Y | Y | + | |||
23053521-AG-A | 20891635-AG-A | + | ||||||
22941473-C-T | 20779587-C-T | BY141924 | Y | Y | + | |||
8404564-G-A | 8536523-G-A | BY72391 | Y | Y | + | |||
16766656-T-C | 14654776-T-C | BY109944 | Y | Y | + | |||
22225188-T-C | 20063302-T-C | BY200872 | DYZ19 | * | ||||
14069178-A-T | 11948472-A-T | ** | ||||||
14445427-G-T | 12324700-G-T | ** | ||||||
14927185-G-A | 12815250-G-A | ** | ||||||
14926288-C-A | 12814353-C-A | ** | ||||||
14815898-C-A | 12703969-C-A | ** | ||||||
14566520-C-A | 12454720-C-A | ** | ||||||
14555199-A-C | 12443400-A-C | ** | ||||||
13956031-G-T | 11835325-G-T | FT234032 | ** | |||||
14525088-G-T | 12413289-G-T | ** | ||||||
14514186-T-G | 12402391-T-G | ** | ||||||
14505381-C-A | 12393586-C-A | ** | ||||||
14501841-C-A | 12390046-C-A | ** | ||||||
13984809-C-A | 11864103-C-A | ** | ||||||
14088374-T-G | 11967668-T-G | ** | ||||||
14069050-C-A | 11948344-C-A | ** | ||||||
14422701-A-C | 12301976-A-C | ** | ||||||
14985056-C-A | 12873124-C-A | FT293679 | ** | |||||
14421722-A-T | 12300997-A-T | ** | ||||||
14292584-C-A | 12171878-C-A | ** | ||||||
14213834-G-C | 12093128-G-C | ** | ||||||
14213830-A-C | 12093124-A-C | 4×AAGG | ** | |||||
14153325-C-A | 12032619-C-A | ** | ||||||
14146951-A-T | 12026245-A-T | ** | ||||||
14146772-T-G | 12026066-T-G | ** | ||||||
14100946-C-A | 11980240-C-A | ** | ||||||
18454880-C-CCTTTCTTT | 16343000-C-CCTTTCTTT | P6_Dst | 13×CTTT | ** | ||||
15132060-A-C | 13020147-A-C | ** | ||||||
15034736-T-G | 12922824-T-G | ** | ||||||
16079240-T-G | 13967360-T-G | ** | ||||||
16738346-C-A | 14626466-C-A | ** | ||||||
16702120-G-T | 14590240-G-T | ** | ||||||
16618701-C-A | 14506821-C-A | ** | ||||||
16605052-C-A | 14493172-C-A | ** | ||||||
16426041-T-A | 14314161-T-A | ** | ||||||
16351944-G-T | 14240064-G-T | ** | ||||||
16344773-C-A | 14232893-C-A | ** | ||||||
16318134-C-A | 14206254-C-A | ** | ||||||
16270851-C-A | 14158971-C-A | ** | ||||||
16270604-C-A | 14158724-C-A | ** | ||||||
16232433-C-T | 14120553-C-T | ** | ||||||
16177209-T-C | 14065329-T-C | ** | ||||||
16120012-C-CTTTTTT | 14008132-C-CTTTTTT | P8_Prx | 10×T | ** | ||||
16079216-A-C | 13967336-A-C | ** | ||||||
15081166-A-G | 12969256-A-G | ** | ||||||
16070028-G-T | 13958148-G-T | ** | ||||||
15987558-C-A | 13875678-C-A | ** | ||||||
15985673-C-A | 13873793-C-A | ** | ||||||
15936701-G-T | 13824821-G-T | ** | ||||||
15842860-T-A | 13730980-T-A | ** | ||||||
15841886-C-A | 13730006-C-A | ** | ||||||
15380338-T-C | 13268458-T-C | ** | ||||||
15368752-C-A | 13256872-C-A | ** | ||||||
15365067-C-A | 13253187-C-A | ** | ||||||
15280542-A-T | 13168641-A-T | ** | ||||||
15278945-G-T | 13167044-G-T | ** | ||||||
15218660-G-T | 13106746-G-T | ** | ||||||
15137988-T-G | 13026075-T-G | ** | ||||||
13946937-C-A | 11826231-C-A | ** | ||||||
13955998-AT-A | 11835292-AT-A | 8×T | ** | |||||
11644243-G-T | FT449751 | ** | ||||||
13938265-C-A | 11817559-C-A | ** | ||||||
10889313-C-T | ** | |||||||
10946559-C-A | ** | |||||||
10938551-C-A | ** | |||||||
10936989-C-T | ** | |||||||
10936956-C-A | ** | |||||||
10936674-C-A | FT178197 | ** | ||||||
10929988-C-CGGGT | ** | |||||||
10911912-A-G | ** | |||||||
10899964-T-A | ** | |||||||
10899944-T-A | ** | |||||||
10899936-C-T | ** | |||||||
10894630-A-C | ** | |||||||
10894625-G-T | ** | |||||||
10886265-G-T | ** | |||||||
10971177-CT-C | ** | |||||||
10875177-T-C | ** | |||||||
10869509-C-A | ** | |||||||
10829332-C-A | ** | |||||||
10829297-C-A | ** | |||||||
10815586-G-T | ** | |||||||
10800584-G-C | ** | |||||||
10796146-C-A | ** | |||||||
10796137-C-T | ** | |||||||
10796135-T-C | ** | |||||||
10786334-G-T | ** | |||||||
10682541-C-A | ** | |||||||
10682538-A-C | ** | |||||||
10960856-T-G | ** | |||||||
10976834-G-T | ** | |||||||
13909959-C-A | 11789253-C-A | ** | ||||||
13504963-C-A | 11349287-C-A | ** | ||||||
13857026-G-T | 11736320-G-T | ** | ||||||
11665859-C-A | ** | |||||||
16968208-C-A | 14856328-C-A | ** | ||||||
13748322-A-T | 11592646-A-T | ** | ||||||
13707371-T-A | 11551695-T-A | ** | ||||||
13707356-T-A | 11551680-T-A | ** | ||||||
13695550-G-T | 11539874-G-T | ** | ||||||
13695533-A-T | 11539857-A-T | ** | ||||||
13695513-A-T | 11539837-A-T | ** | ||||||
13695511-G-T | 11539835-G-T | ** | ||||||
13637847-C-A | 11482171-C-A | ** | ||||||
13520244-A-T | 11364568-A-T | ** | ||||||
13469422-C-G | 11313746-C-G | ** | ||||||
10993073-C-A | ** | |||||||
13437407-C-A | 11281731-C-A | ** | ||||||
13437402-A-G | 11281726-A-G | ** | ||||||
13386550-G-A | 11230874-G-A | ** | ||||||
13385010-C-A | 11229334-C-A | ** | ||||||
13287340-C-A | 11131664-C-A | ** | ||||||
13276647-A-C | 11120971-A-C | ** | ||||||
13271676-C-A | 11116000-C-A | ** | ||||||
13223488-G-GGGAGGC | 11067812-G-GGGAGGC | ** | ||||||
13222319-A-G | 11066643-A-G | ** | ||||||
11031359-C-A | ** | |||||||
11018112-C-A | ** | |||||||
11015137-C-A | ** | |||||||
11006498-T-G | ** | |||||||
16896461-A-C | 14784581-A-C | ** | ||||||
17130399-A-T | 15018519-A-T | ** | ||||||
16995391-G-T | 14883511-G-T | ** | ||||||
22965176-T-G | 20803290-T-G | ** | ||||||
24342183-C-A | 22196036-C-A | P3_t1 | ** | |||||
24296315-C-A | 22150168-C-A | P3_t1 | ** | |||||
24283378-A-G | 22137231-A-G | P3_t1 | ** | |||||
23720493-T-A | 21558607-T-A | ** | ||||||
23570285-A-C | 21408399-A-C | ** | ||||||
23425321-G-C | 21263435-G-C | ** | ||||||
23259222-T-G | 21097336-T-G | ** | ||||||
23098050-C-A | 20936164-C-A | ** | ||||||
23066725-C-A | 20904839-C-A | ** | ||||||
23009310-T-G | 20847424-T-G | ** | ||||||
22994742-C-A | 20832856-C-A | ** | ||||||
22988538-T-C | 20826652-T-C | FGC55859 | ** | |||||
22965035-A-C | 20803149-A-C | ** | ||||||
25201075-GGAAAGA-G | 23054928-GGAAAGA-G | g1 | ** | |||||
22214802-T-G | 20052916-T-G | ** | ||||||
21949153-C-A | 19787267-C-A | ** | ||||||
21709041-CA-C | 19547155-CA-C | ** | ||||||
21671941-G-T | 19510055-G-T | ** | ||||||
21367721-C-A | 19205835-C-A | ** | ||||||
21285125-G-A | 19123239-G-A | ** | ||||||
21269144-G-T | 19107258-G-T | ** | ||||||
21234896-C-A | 19073010-C-A | ** | ||||||
21127478-A-C | 18965592-A-C | ** | ||||||
21054358-A-G | 18892472-A-G | ** | ||||||
21030982-GTGTTTTGT-G | 18869096-GTGTTTTGT-G | P4_Dst | ** | |||||
20989194-C-A | 18827308-C-A | P4_Dst | ** | |||||
20939998-T-A | 18778112-T-A | P4_Dst | ** | |||||
24611425-G-T | 22465278-G-T | P3_t2 | ** | |||||
25996777-A-T | 23850630-A-T | P1_Y1 | ** | |||||
20939979-T-A | 18778093-T-A | P4_Dst | ** | |||||
28481279-C-A | 26335132-C-A | ** | ||||||
56841462-G-T | ** | |||||||
56836518-C-G | ** | |||||||
28818328-A-T | 26672181-A-T | ** | ||||||
28818327-C-A | 26672180-C-A | ** | ||||||
28802778-G-T | 26656631-G-T | ** | ||||||
28802768-C-A | 26656621-C-A | ** | ||||||
28775312-G-A | 26629165-G-A | ** | ||||||
28755929-C-A | 26609782-C-A | ** | ||||||
28700358-T-C | 26554211-T-C | ** | ||||||
28631643-T-A | 26485496-T-A | ** | ||||||
28614218-C-T | 26468071-C-T | FT11388 | ** | |||||
28608507-C-A | 26462360-C-A | ** | ||||||
28515417-T-G | 26369270-T-G | ** | ||||||
28469371-C-A | 26323224-C-A | ** | ||||||
25996789-A-T | 23850642-A-T | P1_Y1 | ** | |||||
28429452-T-A | 26283305-T-A | P1_gr2 | ** | |||||
27971833-G-A | 25825686-G-A | P1_Y2 | ** | |||||
27918704-T-G | 25772557-T-G | P1_Y2 | ** | |||||
27908857-C-CAAACA | 25762710-C-CAAACA | P1_Y2 | 9×A | ** | ||||
27872449-T-A | 25726302-T-A | P1_Y2 | ** | |||||
27756598-T-A | 25610451-T-A | P1_Y2 | ** | |||||
27497073-T-A | 25350926-T-A | P1_Y2 | ** | |||||
27497070-T-A | 25350923-T-A | P1_Y2 | ** | |||||
27497065-T-A | 25350918-T-A | P1_Y2 | ** | |||||
27497040-T-A | 25350893-T-A | P1_Y2 | ** | |||||
26284855-T-A | 24138708-T-A | P1_Y1 | ** | |||||
26284853-T-A | 24138706-T-A | P1_Y1 | ** | |||||
26284834-T-A | 24138687-T-A | P1_Y1 | ** | |||||
20939991-T-A | 18778105-T-A | P4_Dst | ** | |||||
20939976-T-A | 18778090-T-A | P4_Dst | ** | |||||
17030856-A-C | 14918976-A-C | ** | ||||||
18053521-T-G | 15941641-T-G | ** | ||||||
19479463-A-T | 17367583-A-T | ** | ||||||
19235538-T-G | 17123658-T-G | ** | ||||||
19081367-C-A | 16969487-C-A | ** | ||||||
19043607-A-C | 16931727-A-C | ** | ||||||
19042549-C-A | 16930669-C-A | ** | ||||||
18987601-G-T | 16875721-G-T | ** | ||||||
18890515-A-T | 16778635-A-T | ** | ||||||
18736052-TG-T | 16624172-TG-T | ** | ||||||
18443397-C-A | 16331517-C-A | P6_Dst | ** | |||||
18361343-G-T | 16249463-G-T | P6_Prx | ** | |||||
18188710-C-A | 16076830-C-A | ** | ||||||
18173126-T-A | 16061246-T-A | ** | ||||||
17889796-C-A | 15777916-C-A | ** | ||||||
19557362-C-A | 17445482-C-A | ** | ||||||
17648365-A-T | 15536485-A-T | ** | ||||||
17568227-T-A | 15456347-T-A | ** | ||||||
17568224-A-C | 15456344-A-C | ** | ||||||
17568219-C-A | 15456339-C-A | ** | ||||||
17561612-C-A | 15449732-C-A | ** | ||||||
17503556-C-A | 15391676-C-A | ** | ||||||
17500941-A-G | 15389061-A-G | ** | ||||||
17500181-T-G | 15388301-T-G | ** | ||||||
17478820-G-A | 15366940-G-A | ** | ||||||
17297238-G-T | 15185358-G-T | ** | ||||||
17130400-C-A | 15018520-C-A | 21×T | ** | |||||
10673866-T-C | ** | |||||||
17130397-C-A | 15018517-C-A | ** | ||||||
19522688-C-A | 17410808-C-A | ** | ||||||
19705293-T-TC | 17593413-T-TC | P5_Prx | ** | |||||
20939973-C-A | 18778087-C-A | P4_Dst | ** | |||||
20621413-A-T | 18459527-A-T | P4_Prx | ** | |||||
20939960-G-T | 18778074-G-T | P4_Dst | ** | |||||
20939958-T-A | 18778072-T-A | P4_Dst | ** | |||||
20939949-T-A | 18778063-T-A | P4_Dst | ** | |||||
20802096-T-A | 18640210-T-A | P4_Prx | ** | |||||
20802094-T-A | 18640208-T-A | P4_Prx | ** | |||||
20802088-T-A | 18640202-T-A | P4_Prx | ** | |||||
20802087-T-A | 18640201-T-A | P4_Prx | ** | |||||
20757460-T-C | 18595574-T-C | P4_Prx | ** | |||||
20692847-A-C | 18530961-A-C | P4_Prx | ** | |||||
20626385-A-C | 18464499-A-C | P4_Prx | ** | |||||
20626334-T-G | 18464448-T-G | P4_Prx | ** | |||||
20626331-A-C | 18464445-A-C | P4_Prx | ** | |||||
20626324-T-G | 18464438-T-G | P4_Prx | ** | |||||
20621402-A-T | 18459516-A-T | P4_Prx | ** | |||||
19816300-C-A | 17704420-C-A | P5_Prx | ** | |||||
20621398-A-T | 18459512-A-T | P4_Prx | ** | |||||
20621394-A-T | 18459508-A-T | P4_Prx | ** | |||||
20621388-C-A | 18459502-C-A | P4_Prx | ** | |||||
20621368-C-A | 18459482-C-A | P4_Prx | ** | |||||
20620901-T-G | 18459015-T-G | P4_Prx | ** | |||||
20037637-T-A | 17925757-T-A | P5_Prx | ** | |||||
20037630-T-A | 17925750-T-A | P5_Prx | ** | |||||
20037615-T-A | 17925735-T-A | P5_Prx | ** | |||||
20037607-T-A | 17925727-T-A | P5_Prx | ** | |||||
19988077-A-T | 17876197-A-T | P5_Prx | ** | |||||
19988068-C-A | 17876188-C-A | P5_Prx | ** | |||||
19988002-A-T | 17876122-A-T | P5_Prx | ** | |||||
19950767-A-C | 17838887-A-C | P5_Prx | ** | |||||
10682531-C-CATCTA | ** | |||||||
56857995-C-A | ** | |||||||
10673864-A-T | ** | |||||||
17569261-C-A | 15457381-C-A | FGC73988 Y133931 | ** | |||||
10895756-C-A | ** | |||||||
9147002-G-T | 9309393-G-T | ** | ||||||
5911433-G-T | 6043392-G-T | ** | ||||||
8556331-G-TTT | 8688290-G-TTT | ** | ||||||
7384767-C-A | 7516726-C-A | ** | ||||||
10987899-C-T | ** | |||||||
17544863-C-A | 15432983-C-A | ** | ||||||
23742403-C-A | 21580517-C-A | ** | ||||||
7348589-C-A | 7480548-C-A | ** | ||||||
14764911-C-A | 12652980-C-A | ** | ||||||
5557349-C-A | 5689308-C-A | ** | ||||||
26284878-T-A | 24138731-T-A | P1_Y1 | ** | |||||
6593562-C-A | 6725521-C-A | ** | ||||||
18736507-G-T | 16624627-G-T | ** | ||||||
13213332-C-A | 11057656-C-A | ** | ||||||
16450409-C-A | 14338529-C-A | ** | ||||||
10946548-C-T | ** | |||||||
7994248-C-A | 8126207-C-A | ** | ||||||
28700551-C-A | 26554404-C-A | ** | ||||||
4472371-C-A | 4604330-C-A | ** | ||||||
8723746-GAA-G | 8855705-GAA-G | 14×A | ** | |||||
5241167-C-CCTTTCTTT | 5373126-C-CCTTTCTTT | 11×CTTT | ** | |||||
27979802-T-TA | 25833655-T-TA | P1_Y2 | ** | |||||
5426226-C-A | 5558185-C-A | ** | ||||||
5781862-CA-C | 5913821-CA-C | 8×A | ** | |||||
5188653-C-A | 5320612-C-A | ** | ||||||
23825774-ATAT-A | 21663888-ATAT-A | ** | ||||||
3649199-C-A | 3781158-C-A | ** | ||||||
10930106-C-A | ** | |||||||
10796148-G-T | ** | |||||||
16914341-C-A | 14802461-C-A | ** | ||||||
28641032-C-A | 26494885-C-A | ** | ||||||
18401104-C-A | 16289224-C-A | P6_Gap | ** | |||||
18242018-C-A | 16130138-C-A | ** | ||||||
28633679-C-A | 26487532-C-A | ** | ||||||
26991367-G-AAT | 24845220-G-AAT | P1_r4 | ** | |||||
13463922-C-T | 11308246-C-T | ** | ||||||
15012245-C-A | 12900333-C-A | ** | ||||||
56844184-G-T | ** | |||||||
10673849-A-G | ** | |||||||
4017113-C-A | 4149072-C-A | ** | ||||||
20579341-C-G | 18417455-C-G | P5_Dst | ** | |||||
4890162-C-A | 5022121-C-A | ** | ||||||
10663263-G-T | ** | |||||||
14445024-C-A | 12324297-C-A | ** | ||||||
22810164-C-A | 20648278-C-A | ** | ||||||
10986506-C-A | ** | |||||||
19129530-C-A | 17017650-C-A | ** | ||||||
28818363-G-T | 26672216-G-T | ** | ||||||
9944030-C-G | 10106421-C-G | ** | ||||||
10829284-T-A | ** | |||||||
19537927-G-T | 17426047-G-T | ** | ||||||
21457778-G-T | 19295892-G-T | ** | ||||||
3545870-A-C | 3677829-A-C | ** | ||||||
10689029-A-T | ** | |||||||
28818323-A-T | 26672176-A-T | ** | ||||||
17535585-C-A | 15423705-C-A | ** | ||||||
10971161-T-G | ** | |||||||
8321634-C-A | 8453593-C-A | ** | ||||||
13960788-C-A | 11840082-C-A | ** | ||||||
10971182-C-T | ** | |||||||
23881825-G-T | 21719939-G-T | ** | ||||||
10662127-ATTCCAT-A | ** | |||||||
28537868-C-A | 26391721-C-A | ** | ||||||
7782975-C-A | 7914934-C-A | ** | ||||||
13695531-C-A | 11539855-C-A | ** | ||||||
20691959-G-T | 18530073-G-T | P4_Prx | ** | |||||
14960212-C-A | 12848287-C-A | ** | ||||||
28818356-A-T | 26672209-A-T | ** | ||||||
10689015-T-C | FT429125 | ** | ||||||
10689011-T-G | ** | |||||||
11003742-C-G | ** | |||||||
10912060-C-G | ** | |||||||
11038164-C-A | ** | |||||||
16177219-C-A | 14065339-C-A | ** | ||||||
27497066-C-A | 25350919-C-A | P1_Y2 | ** | |||||
19847682-G-T | 17735802-G-T | P5_Prx | ** | |||||
10689088-C-CA | ** | |||||||
17511729-C-A | 15399849-C-A | ** | ||||||
14295358-C-A | 12174652-C-A | ** | ||||||
20579309-T-G | 18417423-T-G | P5_Dst | ** | |||||
22300707-A-G | 20138821-A-G | Z4981 | DYZ19 | ** | ||||
17782592-G-T | 15670712-G-T | ** | ||||||
16270583-A-G | 14158703-A-G | CTS5432 | ** | |||||
13223482-G-A | 11067806-G-A | ** | ||||||
28802798-T-G | 26656651-T-G | ** | ||||||
11003735-C-G | ** | |||||||
10686517-G-T | ** | |||||||
14526540-C-A | 12414741-C-A | ** | ||||||
21084437-ATT-A | 18922551-ATT-A | 12×T | ** | |||||
14356342-C-A | 12235637-C-A | ** | ||||||
28802784-A-T | 26656637-A-T | ** | ||||||
10986474-C-A | ** | |||||||
26124483-G-T | 23978336-G-T | P1_Y1 | ** | |||||
10799230-C-A | ** | |||||||
56836483-C-A | ** | |||||||
7235141-G-T | 7367100-G-T | ** | ||||||
4417375-C-A | 4549334-C-A | ** | ||||||
5426390-C-A | 5558349-C-A | 17×T | ** | |||||
13800897-A-T | 11680191-A-T | ** | ||||||
11003725-C-CTGCGT | ** | |||||||
11003723-CA-C | ** | |||||||
20579345-T-G | 18417459-T-G | P5_Dst | 16×AC | ** | ||||
10686521-C-G | ** | |||||||
16021118-C-A | 13909238-C-A | ** | ||||||
8720256-C-A | 8852215-C-A | ** | ||||||
15289994-C-A | 13178093-C-A | ** | ||||||
28505244-C-A | 26359097-C-A | ** | ||||||
17775074-C-A | 15663194-C-A | ** | ||||||
10686283-G-T | ** | |||||||
13226624-C-A | 11070948-C-A | ** | ||||||
5242786-C-A | 5374745-C-A | ** | ||||||
17871909-C-A | 15760029-C-A | ** | ||||||
28532812-C-A | 26386665-C-A | ** | ||||||
13700625-A-T | 11544949-A-T | ** | ||||||
9952465-C-A | 10114856-C-A | ** | ||||||
11001493-T-C | ** | |||||||
23512336-C-A | 21350450-C-A | ** | ||||||
13463925-G-A | 11308249-G-A | ** | ||||||
6277940-G-T | 6409899-G-T | IR3_Dst | ** | |||||
7099914-C-A | 7231873-C-A | ** | ||||||
7099825-C-A | 7231784-C-A | ** | ||||||
7093324-G-T | 7225283-G-T | ** | ||||||
7093228-C-A | 7225187-C-A | ** | ||||||
7045636-T-G | 7177595-T-G | ** | ||||||
7031132-A-C | 7163091-A-C | ** | ||||||
7008761-C-A | 7140720-C-A | ** | ||||||
6978330-C-A | 7110289-C-A | ** | ||||||
6798890-C-A | 6930849-C-A | ** | ||||||
6798768-A-T | 6930727-A-T | ** | ||||||
6608719-C-A | 6740678-C-A | ** | ||||||
6516905-G-C | 6648864-G-C | ** | ||||||
6277918-G-T | 6409877-G-T | IR3_Dst | ** | |||||
7113893-T-G | 7245852-T-G | ** | ||||||
6277902-T-A | 6409861-T-A | IR3_Dst | ** | |||||
6277891-G-T | 6409850-G-T | IR3_Dst | ** | |||||
6148988-A-T | 6280947-A-T | IR3_Dst | ** | |||||
6005691-C-A | 6137650-C-A | ** | ||||||
5999429-A-C | 6131388-A-C | ** | ||||||
13480799-C-A | 11325123-C-A | ** | ||||||
5887773-C-A | 6019732-C-A | ** | ||||||
5817424-C-A | 5949383-C-A | ** | ||||||
5806144-G-T | 5938103-G-T | ** | ||||||
5698150-C-A | 5830109-C-A | ** | ||||||
5689990-A-T | 5821949-A-T | ** | ||||||
5627848-C-A | 5759807-C-A | ** | ||||||
5576768-C-A | 5708727-C-A | ** | ||||||
7111632-C-A | 7243591-C-A | ** | ||||||
7154621-C-A | 7286580-C-A | ** | ||||||
5366941-T-A | 5498900-T-A | ** | ||||||
8786620-C-A | 8918579-C-A | ** | ||||||
10663289-T-C | ** | |||||||
10653588-C-G | ** | |||||||
10652510-C-A | ** | |||||||
10012848-C-A | 10175239-C-A | ** | ||||||
10004417-A-T | 10166808-A-T | ** | ||||||
9991314-C-A | 10153705-C-A | ** | ||||||
9912687-C-A | 10075078-C-A | ** | ||||||
9671293-G-T | 9833684-G-T | IR3_Prx | ** | |||||
9354558-A-T | 9516949-A-T | ** | ||||||
8977010-C-A | 9139401-C-A | ** | ||||||
9123193-T-A | ** | |||||||
9117508-G-T | ** | |||||||
8694199-G-T | 8826158-G-T | ** | ||||||
7185055-G-T | 7317014-G-T | ** | ||||||
8166874-C-A | 8298833-C-A | ** | ||||||
8072479-T-C | 8204438-T-C | ** | ||||||
7646600-A-C | 7778559-A-C | ** | ||||||
7374529-C-A | 7506488-C-A | ** | ||||||
7363165-A-T | 7495124-A-T | ** | ||||||
7360150-C-A | 7492109-C-A | ** | ||||||
7341091-G-T | 7473050-G-T | ** | ||||||
7310673-A-C | 7442632-A-C | ** | ||||||
7303787-CT-C | 7435746-CT-C | ** | ||||||
7255458-C-A | 7387417-C-A | ** | ||||||
7254498-T-A | 7386457-T-A | ** | ||||||
7243627-C-A | 7375586-C-A | ** | ||||||
7240967-C-CA | 7372926-C-CA | ** | ||||||
5442488-G-T | 5574447-G-T | ** | ||||||
5895128-T-C | 6027087-T-C | ** | ||||||
5293934-G-A | 5425893-G-A | ** | ||||||
3218302-C-A | 3350261-C-A | ** | ||||||
3820934-C-A | 3952893-C-A | ** | ||||||
3786528-G-T | 3918487-G-T | ** | ||||||
3557875-A-C | 3689834-A-C | ** | ||||||
3361391-C-A | 3493350-C-A | ** | ||||||
3349721-C-A | 3481680-C-A | ** | ||||||
3346973-A-T | 3478932-A-T | ** | ||||||
3345304-G-T | 3477263-G-T | ** | ||||||
3340660-T-G | 3472619-T-G | ** | ||||||
3332552-G-T | 3464511-G-T | ** | ||||||
3271304-T-G | 3403263-T-G | ** | ||||||
3117913-G-A | 3249872-G-A | ** | ||||||
4325282-C-A | 4457241-C-A | ** | ||||||
3066607-C-A | 3198566-C-A | ** | ||||||
2962128-G-A | 3094087-G-A | ** | ||||||
2950517-G-T | 3082476-G-T | ** | ||||||
2948776-C-A | 3080735-C-A | ** | ||||||
2885483-G-T | 3017442-G-T | ** | ||||||
2858935-G-T | 2990894-G-T | ** | ||||||
2856490-C-A | 2988449-C-A | ** | ||||||
7224202-C-A | 7356161-C-A | ** | ||||||
9671339-C-T | 9833730-C-T | IR3_Prx | 14×T | ** | ||||
22874563-TA-T | 20712677-TA-T | 8×A | ** | |||||
16297122-C-A | 14185242-C-A | ** | ||||||
4138370-A-T | 4270329-A-T | ** | ||||||
3340729-A-C | 3472688-A-C | ** | ||||||
4849414-G-T | 4981373-G-T | ** | ||||||
4503227-G-T | 4635186-G-T | ** | ||||||
4968302-C-A | 5100261-C-A | ** | ||||||
5011740-A-C | 5143699-A-C | ** | ||||||
4757647-C-A | 4889606-C-A | ** | ||||||
5110374-A-T | 5242333-A-T | ** | ||||||
4703870-A-G | 4835829-A-G | ** | ||||||
4665116-C-A | 4797075-C-A | ** | ||||||
4654963-A-G | 4786922-A-G | ** | ||||||
4902216-C-A | 5034175-C-A | ** | ||||||
5204453-A-T | 5336412-A-T | ** | ||||||
4540050-G-T | 4672009-G-T | ** | ||||||
4647455-G-T | 4779414-G-T | ** | ||||||
5247356-T-G | 5379315-T-G | ** | ||||||
4392986-G-T | 4524945-G-T | ** | ||||||
4488834-C-A | 4620793-C-A | ** | ||||||
5239276-G-T | 5371235-G-T | ** | ||||||
56849522-C-A | *** | |||||||
9117212-C-A | 9279603-C-A | *** | ||||||
15060487-C-A | 12948579-C-A | *** | ||||||
5829114-TTGG-T | 5961073-TTGG-T | *** | ||||||
22599048-C-A | 20437162-C-A | *** | ||||||
56830177-C-A | *** | |||||||
28798639-G-T | 26652492-G-T | *** | ||||||
9989937-T-A | 10152328-T-A | *** | ||||||
28798674-G-T | 26652527-G-T | *** | ||||||
2790331-C-A | 2922290-C-A | *** | ||||||
10789275-C-A | *** | |||||||
11643695-A-G | *** | |||||||
9030408-AGAAAG-A | 9192799-AGAAAG-A | 17×GAAAG | *** | |||||
13463381-A-C | 11307705-A-C | *** | ||||||
23260612-T-TTA | 21098726-T-TTA | 8×TA | *** | |||||
56829815-C-A | *** | |||||||
8385388-C-A | 8517347-C-A | *** | ||||||
56834887-G-T | *** | |||||||
5367484-C-A | 5499443-C-A | *** | ||||||
4357798-T-A | 4489757-T-A | *** | ||||||
17146550-CA-C,CAA | 15034670-CA-C,CAA | 12×A | *** | |||||
10912396-C-A | *** | |||||||
3535958-C-A | 3667917-C-A | *** | ||||||
6734680-CTTT-C,CTTTT | 6866639-CTTT-C,CTTTT | 21×T | *** | |||||
11014366-C-G | *** | |||||||
18232245-C-A | 16120365-C-A | *** | ||||||
11643695-A-AACTGT | *** | |||||||
18176671-A-T | 16064791-A-T | *** | ||||||
17633181-G-T | 15521301-G-T | *** | ||||||
13452385-TCCATTCCATTCAAATACACTCCTTG-T,TCCATTCAAATACACTCCTTG | 11296709-TCCATTCCATTCAAATACACTCCTTG-T,TCCATTCAAATACACTCCTTG | *** | ||||||
15740526-C-A | 13628646-C-A | *** | ||||||
10919256-A-G | *** | |||||||
16020848-C-A | 13908968-C-A | *** | ||||||
15396713-C-A | 13284833-C-A | *** | ||||||
10980664-G-A | *** | |||||||
8379070-C-A | 8511029-C-A | *** | ||||||
27030472-T-A | 24884325-T-A | P1_r4 | *** | |||||
19122292-C-A | 17010412-C-A | *** | ||||||
5336668-G-T | 5468627-G-T | *** | ||||||
17323517-G-A | 15211637-G-A | *** | ||||||
10692883-A-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 666904 | 9829717 | 8024491 | 7910651 |
Used in age calculations | 9829717 | 8024491 | 7910651 |
Counts of SNPs | 5 | 4 |
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