Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > FGC13023 > FGC13017 > FGC13014 > FGC13038

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
89232
28817252-A-G 26671105-A-G A*
18287019-A-G 16175139-A-G P6_Prx A*
22276940-T-A 20115054-T-A DYZ19 A*
25982387-G-A 23836240-G-A P1_Y1 A*
20669155-A-C 18507269-A-C P4_Prx A*
19670043-C-G 17558163-C-G P5_Prx A*
22305099-A-G 20143213-A-G DYZ19 A*
24251248-G-A 22105101-G-A P3_b1 A*
22793377-C-T 20631491-C-T BY140801 YY+
21356179-G-T 19194293-G-T BY132296 YY+
13600468-A-G 11444792-A-G BY86648 +
21037056-T-C 18875170-T-C BY130053 Y+
8441846-A-G 8573805-A-G BY72794 YY+
7159552-A-G 7291511-A-G BY63585 YY+
18704785-G-A 16592905-G-A BY123265 YY+
18556676-G-A 16444796-G-A BY21898 YY+
7009230-C-T 7141189-C-T BY62827 YY+
6931918-C-A 7063877-C-A YY+
6931912-G-A 7063871-G-A BY53598 YY+
6931911-T-C 7063870-T-C BY62282 YY+
18178389-A-G 16066509-A-G BY120659 YY+
17945187-T-G 15833307-T-G BY118625 YY+
17766560-G-A 15654680-G-A BY117263 YY+
14646526-G-C 12534590-G-C BY96957 YY+
17018388-G-T 14906508-G-T BY111776 YY+
16604966-TCACACTGC-T 14493086-TCACACTGC-T +
14711007-A-T 12599074-A-T BY97230 YY+
14830980-A-G 12719047-A-G BY97857 YY+
23405829-T-C 21243943-T-C BY145076 YY+
22474348-A-T 20312462-A-T BY43965 DYZ19 +
22474360-T-C 20312474-T-C Z8328 DYZ19 +
14891065-A-G 12779131-A-G BY98290 YY+
22474379-A-C 20312493-A-C Z8329 DYZ19 +
22300352-G-A 20138466-G-A DYZ19 *
14073463-C-A 11952757-C-A **
10928051-T-G **
10929614-T-G **
14076766-C-T 11956060-C-T **
10945180-C-G **
10947536-C-G **
13988954-G-T 11868248-G-T **
10916562-AC-A **
13946899-C-A 11826193-C-A **
13880171-C-A 11759465-C-A **
11668469-G-T **
10947546-A-C **
10916569-A-G **
14143025-CAAAA-C 12022319-CAAAA-C 16×A**
10915335-T-A **
11662518-A-C **
10914687-CTGATCA-C **
14181773-G-T 12061067-G-T **
10902687-T-G **
10899990-C-T **
14387690-A-C 12266986-A-C **
14485510-G-T 12364779-G-T **
14514643-C-A 12402848-C-A **
14558424-C-T 12446625-C-T **
14703450-A-G 12591516-A-G **
10893751-T-G **
10889822-A-T **
10889373-A-C **
11662882-C-A **
10980277-C-T **
11659711-GGAATGGAATGCAATA-G **
11027031-T-C **
10992361-A-C **
10974781-T-A **
10994653-C-G **
10994661-C-A **
10994667-T-C **
10995771-ATCGAC-A **
10998418-T-G **
10974754-ACTCCT-A **
10998423-T-G **
10998996-C-A **
11013259-A-T **
11017313-T-C **
11019748-C-A **
11020347-C-A **
11027051-C-CTCCTA **
10984989-A-C **
14990400-A-C 12878485-A-C **
11032738-C-A **
10974749-A-G **
13198864-C-A 11043188-C-A **
13441517-C-A 11285841-C-A **
10971287-T-A **
13480730-C-A 11325054-C-A **
13490473-C-A 11334797-C-A **
13579684-C-A 11424008-C-A **
13597309-C-A 11441633-C-A **
10967612-T-G **
10965381-C-A **
13720524-G-A 11564848-G-A **
10965019-T-G **
10947549-T-G **
17535174-C-A 15423294-C-A **
15084566-C-A 12972656-C-A **
23177604-A-T 21015718-A-T **
25915003-G-T 23768856-G-T P1_Y1 **
24600411-CCTCT-C 22454264-CCTCT-C P3_t2 8×CT**
24546111-AAAAAATGATGG-A 22399964-AAAAAATGATGG-A P3_t2 **
23625426-G-T 21463540-G-T **
23459823-C-A 21297937-C-A **
23442564-C-A 21280678-C-A **
23048781-C-A 20886895-C-A **
27570775-G-T 25424628-G-T P1_Y2 **
22996961-A-T 20835075-A-T **
22874557-T-A 20712671-T-A **
22874525-AC-A 20712639-AC-A **
22487795-T-G 20325909-T-G DYZ19 **
22476836-G-T 20314950-G-T DYZ19 **
22476050-C-G 20314164-C-G DYZ19 **
22476030-T-G 20314144-T-G DYZ19 **
26081664-A-C 23935517-A-C P1_Y1 **
27717626-G-C 25571479-G-C P1_Y2 **
22476028-T-A 20314142-T-A DYZ19 **
56841203-C-T **
56850399-C-G **
56850342-G-A **
56844577-A-T **
56841269-A-G **
56841266-C-G **
56841228-G-T **
56841192-T-G **
27717628-G-C 25571481-G-C P1_Y2 **
56841189-TC-T **
28777371-G-A 26631224-G-A **
28639801-C-A 26493654-C-A **
28597214-C-CT 26451067-C-CT 8×T**
28549179-G-T 26403032-G-T **
28516473-C-A 26370326-C-A **
28401993-C-A 26255846-C-A P1_gr2 **
22476029-T-A 20314143-T-A DYZ19 **
22475691-C-A 20313805-C-A DYZ19 **
15109150-C-A 12997237-C-A **
17549319-A-C 15437439-A-C **
18422775-C-A 16310895-C-A P6_Gap **
18249853-G-A 16137973-G-A **
18196308-A-C 16084428-A-C **
18196199-G-T 16084319-G-T **
18188258-A-T 16076378-A-T **
18008688-GTTT-G 15896808-GTTT-G P7_Dst 17×T**
10888766-T-C **
18891212-C-A 16779332-C-A **
17228269-G-T 15116389-G-T **
17115025-C-A 15003145-C-A **
17030646-C-A 14918766-C-A **
16896464-C-T 14784584-C-T **
16015650-T-G 13903770-T-G **
15986674-C-T 13874794-C-T **
15680048-C-A 13568168-C-A **
18546976-T-G 16435096-T-G **
19065895-C-A 16954015-C-A **
22474387-T-C 20312501-T-C DYZ19 **
21107032-A-C 18945146-A-C **
22352468-C-G 20190582-C-G DYZ19 **
22170907-C-G 20009021-C-G **
22084805-G-T 19922919-G-T **
21275736-C-A 19113850-C-A **
21243205-C-A 19081319-C-A **
21196966-C-A 19035080-C-A **
21108117-C-A 18946231-C-A **
20866541-T-G 18704655-T-G P4_Dst **
19073161-C-A 16961281-C-A **
20776248-T-TTC 18614362-T-TTC P4_Prx **
20084410-TTC-T 17972530-TTC-T P5_Dst **
19857577-A-AC 17745697-A-AC P5_Prx **
19816625-A-T 17704745-A-T P5_Prx **
19532546-C-A 17420666-C-A **
19250045-T-C 17138165-T-C **
19145506-C-T 17033626-C-T **
10888817-C-A **
10886546-C-A **
20943518-TTG-T 18781632-TTG-T P4_Dst 8×TG**
13475502-C-A 11319826-C-A **
2786064-C-A 2918023-C-A **
10916609-A-G **
23062521-C-A 20900635-C-A **
14051805-C-A 11931099-C-A **
26453075-T-TC 24306928-T-TC P1_Y1 **
13943248-C-A 11822542-C-A **
21416652-C-A 19254766-C-A **
10018156-C-A 10180547-C-A **
3069120-C-A 3201079-C-A **
16041141-C-A 13929261-C-A **
16050976-C-A 13939096-C-A **
28673056-C-A 26526909-C-A **
10957885-G-T **
4557615-C-A 4689574-C-A **
10760046-A-G **
10760034-C-CCACTG **
2812904-T-C 2944863-T-C **
3251814-C-A 3383773-C-A **
10872248-A-T **
4175030-C-A 4306989-C-A **
4613866-C-A 4745825-C-A **
4613756-C-A 4745715-C-A **
4604285-C-A 4736244-C-A **
10886506-A-T **
4469836-C-A 4601795-C-A **
4439405-C-A 4571364-C-A **
4377969-CTTT-C 4509928-CTTT-C 19×T**
4124127-GA-G 4256086-GA-G 8×A**
3285407-T-G 3417366-T-G **
4007913-C-A 4139872-C-A **
3994224-G-A 4126183-G-A **
3950741-A-T 4082700-A-T **
3852241-C-G 3984200-C-G **
3688354-A-C 3820313-A-C **
3389174-G-T 3521133-G-T **
3340661-T-G 3472620-T-G **
13705502-A-C 11549826-A-C **
10994659-A-T **
4805302-C-A 4937261-C-A **
13480676-G-A 11325000-G-A **
13255604-C-A 11099928-C-A **
13896867-C-A 11776161-C-A **
17813362-C-A 15701482-C-A **
6752553-C-A 6884512-C-A **
10760985-G-C **
10841950-A-G **
10841972-T-A **
19622181-C-A 17510301-C-A P5_Prx **
10776072-C-A **
6978245-C-A 7110204-C-A **
18196490-CAAAA-C 16084610-CAAAA-C 26×A**
6085321-G-T 6217280-G-T **
13139017-T-C 10628503-T-C **
22962005-G-T 20800119-G-T **
19102752-C-A 16990872-C-A **
9416729-TTG-T 9579120-TTG-T **
11022897-CT-C **
23416770-C-A 21254884-C-A **
15288812-CA-C 13176911-CA-C **
27792014-G-T 25645867-G-T P1_Y2 **
11037723-C-A **
7506124-C-A 7638083-C-A ZS12423 IR1_L **
14512094-C-A 12400299-C-A **
19037871-C-A 16925991-C-A **
15616689-G-T 13504809-G-T **
8314319-AT-A 8446278-AT-A **
8314256-C-A 8446215-C-A **
10866157-C-A **
10799382-C-A **
14627142-C-A 12515210-C-A **
17315118-C-A 15203238-C-A **
10885808-A-T **
10866284-T-C **
10889388-A-C **
4926034-G-T 5057993-G-T **
10940337-AC-A **
4690146-C-A 4822105-C-A **
4604229-C-A 4736188-C-A **
4864362-G-T 4996321-G-T **
10764462-C-CT **
10775475-C-T **
10775473-C-T **
10775464-C-T **
10775463-C-T **
10773227-C-A **
10764515-A-AT **
10764481-CACCAT-C **
10761035-T-C **
10775492-A-G **
10759433-C-A **
10759428-T-A **
10759420-C-A **
10759405-CTGCAT-C **
10752596-T-G **
5165370-G-T 5297329-G-T **
10692572-C-A **
10775486-T-C **
10776767-A-T **
10655900-AT-A **
10841956-T-A **
10872257-TTTCTA-T **
10872252-A-T **
10865386-C-A **
10849335-C-A **
10844790-T-C **
10842944-G-T **
10841970-A-G **
10841189-C-T **
10785936-A-T **
10822197-A-T **
10821622-T-A **
10817426-C-A **
10808085-C-A **
10799397-C-A **
10796924-T-C **
10792505-G-T **
10789102-C-A **
10663158-G-T **
10752590-A-T **
10628495-C-T **
6039685-C-A 6171644-C-A **
6688565-A-C 6820524-A-C **
6626725-A-C 6758684-A-C **
6454724-G-A 6586683-G-A **
6347757-G-A 6479716-G-A **
6262554-G-T 6394513-G-T IR3_Dst **
6068017-C-CT 6199976-C-CT 10×T**
6039710-C-A 6171669-C-A **
5976447-C-A 6108406-C-A **
6729603-C-A 6861562-C-A **
5817863-G-A 5949822-G-A **
5675566-A-C 5807525-A-C **
5603501-T-C 5735460-T-C **
5574899-C-A 5706858-C-A **
5549255-C-T 5681214-C-T **
5321653-C-A 5453612-C-A **
5233983-T-C 5365942-T-C **
5224663-A-C 5356622-A-C **
6688643-A-C 6820602-A-C **
37112-G-A **
7045503-C-A 7177462-C-A **
8314283-G-T 8446242-G-T **
10628491-T-C **
10628485-C-T **
10032534-C-A 10194925-C-A **
10023644-GTCTC-G 10186035-GTCTC-G **
9549051-G-T 9711442-G-T IR3_Prx **
8314300-CCGCT-C 8446259-CCGCT-C **
8314297-C-CACT 8446256-C-CACT **
9548983-G-GTT 9711374-G-GTT IR3_Prx **
8314245-CG-C 8446204-CG-C **
7140941-C-A 7272900-C-A **
7319169-C-A 7451128-C-A **
8001973-A-C 8133932-A-C **
22974116-CAAAAAAA-C 20812230-CAAAAAAA-C 24×A***
56850369-A-G ***
10983578-G-T ***
17362708-C-A 15250828-C-A ***
59030506-A-C 56884359-A-C ***
10657407-T-A,C ***
10776482-C-CA ***
21934727-C-A 19772841-C-A ***
56837037-ACTCCAATCCG-A,ACTCCAATCTA ***
7116198-TG-T 7248157-TG-T ***
56832999-G-T ***
56832982-C-A ***
56826864-TTCCATTCCATTCGAG-T,TTAGATTCCATTCGAG ***
22288087-A-T 20126201-A-T DYZ19 ***
2950298-CAT-C 3082257-CAT-C ***
4282246-T-C 4414205-T-C ***
10987275-G-T ***
10980674-A-G ***
21146275-CT-C,CTT 18984389-CT-C,CTT 17×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 89232997626381253687986578
Used in age calculations997626381253687986578
Counts of SNPs2019
Variant counts last updated 2018-07-20 16:52:37.



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