Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > A5001 > Y46504

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
301541
20628329-G-T 18466443-G-T P4_Prx A*
6343977-G-A 6475936-G-A A*
20649646-A-G 18487760-A-G P4_Prx A*
19417091-A-T 17305211-A-T BY128918 YY+
18037437-A-G 15925557-A-G BY119366 YY+
21880612-A-G 19718726-A-G BY136162 YY+
22208782-C-T 20046896-C-T BY138479 YY+
17713361-G-A 15601481-G-A BY116870 YY+
16925501-C-T 14813621-C-T BY111163 YY+
23424859-T-C 21262973-T-C BY145206 YY+
16509111-G-C 14397231-G-C BY108257 YY+
23539877-T-C 21377991-T-C BY146068 YY+
24472783-A-G 22326636-A-G BY150202 Y+
14002527-C-T 11881821-C-T BY92209 YY+
19311779-C-A 17199899-C-A BY128147 YY+
7792356-C-G 7924315-C-G BY67673 YY+
28030744-CTT-C 25884597-CTT-C P1_Y2 +
7419939-A-G 7551898-A-G BY65125 YY+
6979311-A-G 7111270-A-G BY62691 YY+
8471651-AG-A 8603610-AG-A +
15164371-C-G 13052457-C-G BY99999 YY+
14651468-C-T 12539533-C-T BY96981 YY+
6803143-A-T 6935102-A-T BY61409 YY+
15216896-G-T 13104982-G-T BY100216 Y+
22509992-CT-C 20348106-CT-C DYZ19 *
2971139-T-A 3103098-T-A *
13229879-C-A 11074203-C-A **
11034047-C-T **
13316052-C-T 11160376-C-T **
14532610-C-A 12420811-C-A **
11038057-C-A **
11034090-T-C **
13221963-T-G 11066287-T-G **
14264437-C-A 12143731-C-A **
11030716-C-A **
11014117-T-A **
11001528-T-G **
13328801-C-A 11173125-C-A **
10988834-C-A **
10988832-C-A **
10976765-C-T **
10976756-T-C **
10968072-C-A **
10939146-G-A **
10992384-C-A **
13491175-C-A 11335499-C-A **
13441562-C-A 11285886-C-A **
13839777-A-C 11719071-A-C **
14100273-C-A 11979567-C-A **
14078822-A-G 11958116-A-G **
13888546-G-T 11767840-G-T **
13873997-C-A 11753291-C-A **
13859053-C-A 11738347-C-A **
13856322-G-A 11735616-G-A **
13856321-T-C 11735615-T-C **
13856313-G-C 11735607-G-C **
13798616-G-A 11677910-G-A **
14527750-G-A 12415951-G-A **
11673765-G-A **
10939109-C-T **
13722513-G-T 11566837-G-T **
13721059-A-T 11565383-A-T **
13712604-G-T 11556928-G-T **
13628818-C-A 11473142-C-A **
13506980-C-A 11351304-C-A **
14343917-C-A 12223212-C-A **
13456848-A-C 11301172-A-C **
13748346-G-T 11592670-G-T **
24235387-G-T 22089240-G-T P3_b1 29×T**
10939101-C-T **
9847476-T-A 10009867-T-A **
10663896-C-A **
9986267-G-T 10148658-G-T **
9974320-C-A 10136711-C-A **
9955473-C-A 10117864-C-A **
9944817-C-A 10107208-C-A **
9934941-C-A 10097332-C-A **
9934242-G-A 10096633-G-A **
9929861-C-A 10092252-C-A **
9929782-A-G 10092173-A-G **
9887723-G-T 10050114-G-T **
9764313-A-C 9926704-A-C **
10687756-A-C **
9513193-T-G 9675584-T-G **
9089017-A-C 9251408-A-C **
9120175-C-A **
9108804-G-T **
8786709-G-C 8918668-G-C **
8658762-C-A 8790721-C-A **
8342986-C-A 8474945-C-A **
8253686-C-A 8385645-C-A **
7755112-G-T 7887071-G-T **
7397635-A-G 7529594-A-G **
10685484-C-A **
10687794-A-C **
10918820-C-A **
10862571-C-A **
10917709-C-T **
10917707-C-T **
10917705-A-T **
10914598-G-A **
10873053-C-A **
14718622-G-A 12606690-G-A **
10870197-T-C **
10868979-A-T **
10863613-T-G **
10863606-C-A **
10844442-C-T **
10688065-CT-C **
10827159-C-A **
10825292-T-A **
10822935-T-G **
10819959-C-A **
10791331-C-A **
10784485-C-A **
10783038-T-C **
10774444-C-A **
10772540-C-T **
10754737-T-G **
10692184-C-A **
14716563-C-A 12604631-C-A **
15608207-C-A 13496327-C-A **
14719760-G-T 12607828-G-T **
22205715-C-A 20043829-C-A **
22979257-C-A 20817371-C-A **
22955862-C-A 20793976-C-A **
22914609-G-A 20752723-G-A **
22811688-A-C 20649802-A-C **
22590713-C-T 20428827-C-T **
22590694-G-A 20428808-G-A **
22581155-C-A 20419269-C-A **
22436825-C-T 20274939-C-T DYZ19 **
22341098-T-C 20179212-T-C DYZ19 **
22210584-T-C 20048698-T-C **
22067631-T-G 19905745-T-G **
23188946-G-T 21027060-G-T **
21803761-G-T 19641875-G-T **
21583113-C-A 19421227-C-A **
21532683-C-A 19370797-C-A **
21502245-T-G 19340359-T-G **
21408325-C-A 19246439-C-A **
21388741-C-T 19226855-C-T **
21384838-G-A 19222952-G-A **
21296641-C-A 19134755-C-A **
21248799-G-T 19086913-G-T **
21148490-A-G 18986604-A-G **
22993247-C-A 20831361-C-A **
23252692-G-C 21090806-G-C **
20359702-A-C 18197816-A-C P5_Dst **
27540970-A-C 25394823-A-C P1_Y2 **
56842953-T-C **
56830082-C-T **
56825767-T-G **
28760791-C-A 26614644-C-A **
28716280-C-A 26570133-C-A **
28688316-C-G 26542169-C-G **
28496057-C-A 26349910-C-A **
28496054-C-A 26349907-C-A **
27823795-G-T 25677648-G-T P1_Y2 **
27808519-G-A 25662372-G-A P1_Y2 **
26355370-T-C 24209223-T-C P1_Y1 **
23293599-TATA-T 21131713-TATA-T **
26140020-G-T 23993873-G-T P1_Y1 **
26124473-AG-A 23978326-AG-A P1_Y1 **
24595357-T-C 22449210-T-C P3_t2 **
24535237-G-T 22389090-G-T P3_t2 **
24247437-C-A 22101290-C-A P3_b1 **
23870949-G-A 21709063-G-A **
23804524-C-A 21642638-C-A **
23793493-A-G 21631607-A-G **
23435894-G-T 21274008-G-T **
23386469-C-A 21224583-C-A **
21085807-C-A 18923921-C-A **
19714506-G-GAT 17602626-G-GAT P5_Prx **
14757641-C-A 12645710-C-A **
16508667-C-A 14396787-C-A **
17362738-C-A 15250858-C-A **
17353107-C-A 15241227-C-A **
17328979-A-T 15217099-A-T **
17193299-C-A 15081419-C-A **
17038343-C-A 14926463-C-A **
16938201-G-T 14826321-G-T **
16905829-C-A 14793949-C-A **
16860796-G-T 14748916-G-T **
16720482-G-A 14608602-G-A **
16701993-T-C 14590113-T-C Z38093 **
16079255-A-AT 13967375-A-AT **
17428345-G-T 15316465-G-T **
16005527-T-A 13893647-T-A **
15824118-C-A 13712238-C-A **
15761020-C-A 13649140-C-A **
15662965-T-C 13551085-T-C **
7319087-C-A 7451046-C-A **
15478841-C-A 13366961-C-A **
15399517-C-A 13287637-C-A **
15047846-T-C 12935937-T-C **
14831898-T-C 12719965-T-C **
14828639-C-G 12716706-C-G FT36899 **
17374391-G-T 15262511-G-T **
17581329-C-A 15469449-C-A **
19522758-T-G 17410878-T-G **
18855848-A-G 16743968-A-G **
19354854-C-A 17242974-C-A **
19346541-C-A 17234661-C-A **
19286435-G-A 17174555-G-A **
19270606-C-A 17158726-C-A **
19226643-AT-A 17114763-AT-A **
19202894-T-C 17091014-T-C **
19129604-C-A 17017724-C-A **
19055462-G-T 16943582-G-T **
18932770-A-G 16820890-A-G **
18926956-C-A 16815076-C-A **
18853153-T-G 16741273-T-G **
17770512-C-A 15658632-C-A **
18825710-G-T 16713830-G-T **
18614149-C-A 16502269-C-A **
18233377-C-A 16121497-C-A **
18190708-A-C 16078828-A-C **
18186905-C-A 16075025-C-A **
18156891-C-A 16045011-C-A **
18035950-G-T 15924070-G-T **
17942227-C-A 15830347-C-A **
17927480-C-A 15815600-C-A **
17913141-C-A 15801261-C-A **
7322614-C-A 7454573-C-A **
30137-G-T **
9855928-C-A 10018319-C-A **
15741862-G-T 13629982-G-T **
56850402-T-A **
14200492-C-A 12079786-C-A **
56850403-G-A **
56850434-A-C **
3078483-C-A 3210442-C-A **
14649266-C-A 12537331-C-A **
18210823-A-T 16098943-A-T **
7474459-T-A 7606418-T-A IR1_L **
7133986-C-A 7265945-C-A **
56850392-G-A **
10653806-C-A **
7163025-C-A 7294984-C-A **
14296413-C-A 12175707-C-A **
28534428-C-A 26388281-C-A **
7240246-C-A 7372205-C-A **
21388726-A-G 19226840-A-G **
6400947-G-T 6532906-G-T **
24247411-AC-A 22101264-AC-A P3_b1 **
27540917-AACAC-A 25394770-AACAC-A P1_Y2 24×AC**
4703095-GA-G 4835054-GA-G 8×A**
10834571-T-C **
7204958-C-A 7336917-C-A **
10821746-C-A **
18879969-G-C 16768089-G-C **
20579292-C-T 18417406-C-T P5_Dst **
11010266-T-G **
13722497-C-T 11566821-C-T **
13722486-G-A 11566810-G-A **
10682812-A-T **
18965974-C-A 16854094-C-A **
21211414-G-T 19049528-G-T **
56848332-G-A **
10997741-T-A **
19899617-GGAA-G 17787737-GGAA-G P5_Prx **
23425517-C-A 21263631-C-A **
10755259-A-C **
10755248-A-C **
13940948-G-C 11820242-G-C **
8350636-C-A 8482595-C-A **
10925599-C-T **
18660173-C-A 16548293-C-A **
10834577-T-G **
10755284-C-T **
15428337-C-CTT 13316457-C-CTT 10×T**
10686521-C-G **
3965397-C-A 4097356-C-A **
24503106-C-CAA 22356959-C-CAA 16×A**
10829372-T-C **
10895893-T-C **
10895895-G-C **
10776174-C-G **
3435987-C-A 3567946-C-A **
28793782-T-C 26647635-T-C **
10895901-A-C **
10755321-C-T **
13255202-C-A 11099526-C-A **
13486651-G-A 11330975-G-A **
13486624-C-T 11330948-C-T **
15940299-T-A 13828419-T-A **
11020166-C-A **
10895902-G-A **
10785582-C-A **
13722519-C-G 11566843-C-G **
10894696-C-A **
10755328-A-C **
11013788-C-A **
20694293-A-G 18532407-A-G P4_Prx **
21388738-T-C 19226852-T-C **
10895927-A-ACTTCC **
56829936-ACCATT-A **
20694358-C-T 18532472-C-T P4_Prx **
20694356-C-A 18532470-C-A P4_Prx **
20694341-C-T 18532455-C-T P4_Prx **
3252591-C-A 3384550-C-A **
20694307-A-G 18532421-A-G P4_Prx **
20694272-T-C 18532386-T-C P4_Prx **
15410849-C-A 13298969-C-A **
18422616-C-A 16310736-C-A P6_Gap **
3732609-C-A 3864568-C-A **
9438099-CTTT-C 9600490-CTTT-C 30×T**
14688976-C-A 12577042-C-A **
16692117-CAAA-C 14580237-CAAA-C 28×A**
28791258-GCGTGC-G 26645111-GCGTGC-G **
28791251-A-C 26645104-A-C **
28791247-T-G 26645100-T-G **
11643683-G-A **
18080673-C-A 15968793-C-A **
10761781-CTTCCATTCCA-C **
7106383-C-A 7238342-C-A **
4158353-G-T 4290312-G-T **
5213956-G-A 5345915-G-A **
5053617-G-T 5185576-G-T **
4920066-C-A 5052025-C-A **
4438411-A-T 4570370-A-T **
4351590-T-C 4483549-T-C **
4311605-C-A 4443564-C-A **
4243694-C-A 4375653-C-A **
4230077-C-A 4362036-C-A **
4144409-C-A 4276368-C-A **
5213997-C-CA 5345956-C-CA **
4079371-C-A 4211330-C-A **
3970643-G-T 4102602-G-T **
3914733-C-A 4046692-C-A **
3732801-G-T 3864760-G-T **
14912048-C-A 12800115-C-A **
3670798-G-T 3802757-G-T **
3638267-G-T 3770226-G-T **
3467279-C-A 3599238-C-A **
5213992-CCA-C 5345951-CCA-C **
19414935-G-T 17303055-G-T CTS10344 M5521 PF1783 **
22732761-C-A 20570875-C-A **
6553414-G-T 6685373-G-T **
7117052-C-A 7249011-C-A **
7116998-C-A 7248957-C-A **
7094338-T-C 7226297-T-C **
7081742-C-A 7213701-C-A **
23037882-A-C 20875996-A-C F25718 **
6977077-C-A 7109036-C-A **
6707454-C-A 6839413-C-A **
6645471-C-A 6777430-C-A **
6183346-G-T 6315305-G-T IR3_Dst **
5454834-C-A 5586793-C-A **
6145390-T-C 6277349-T-C IR3_Dst **
2948434-T-C 3080393-T-C Y170 **
4870623-CGT-C 5002582-CGT-C 8×GT**
6114889-C-A 6246848-C-A **
5923851-C-A 6055810-C-A **
5871910-C-A 6003869-C-A **
5866237-G-T 5998196-G-T **
5832784-C-A 5964743-C-A **
5761372-C-A 5893331-C-A **
3309493-G-T 3441452-G-T **
3674621-G-T 3806580-G-T **
3274776-C-A 3406735-C-A **
10753555-A-T **
2948006-C-A 3079965-C-A **
5213970-C-T 5345929-C-T **
13839780-G-A 11719074-G-A **
9446221-C-A 9608612-C-A **
26514952-C-CAT 24368805-C-CAT P1_Y1 **
4582393-C-A 4714352-C-A **
13872777-C-A 11752071-C-A **
13221977-A-C 11066301-A-C **
10753529-C-G **
10653368-G-A **
8288815-TAA-T 8420774-TAA-T 23×A**
13856361-T-G 11735655-T-G **
58994833-C-T 56848686-C-T **
13856357-G-GCACTT 11735651-G-GCACTT **
13856344-A-T 11735638-A-T **
13856339-A-T 11735633-A-T **
18879961-T-G 16768081-T-G **
3409857-C-A 3541816-C-A **
7349215-C-A 7481174-C-A **
10895908-C-A **
2817150-C-A 2949109-C-A **
13486667-A-T 11330991-A-T **
58996551-C-A 56850404-C-A **
58991128-C-A 56844981-C-A **
13486616-G-C 11330940-G-C **
15497619-C-A 13385739-C-A **
2843863-C-A 2975822-C-A **
10948473-CTCCAT-C **
2685685-T-G 2817644-T-G **
8822646-C-A 8954605-C-A **
18965967-C-A 16854087-C-A **
20694273-G-A 18532387-G-A A20636 P4_Prx **
2852779-A-C 2984738-A-C **
28761231-A-C 26615084-A-C **
10983966-A-C ***
10983971-A-C ***
15690773-C-A 13578893-C-A ***
8760517-CTTTTT-C,CTT 8892476-CTTTTT-C,CTT 20×T***
23572434-C-A 21410548-C-A ***
56858274-T-C ***
13480377-C-A 11324701-C-A A17123 ***
22598298-C-A 20436412-C-A ***
13992191-CA-C,CAA 11871485-CA-C,CAA 22×A***
56838623-C-G ***
7434999-C-A 7566958-C-A ***
18717876-T-TAA 16605996-T-TAA 16×A***
17239290-TTATA-T 15127410-TTATA-T 17×TA***
28754529-C-A 26608382-C-A ***
22484671-C-A 20322785-C-A DYZ19 ***
19547815-TAAAA-T 17435935-TAAAA-T 16×A***
15206182-TAA-T 13094268-TAA-T 14×A***
22103840-C-A 19941954-C-A ***
10748189-G-A ***
10677440-C-A ***
23425094-G-A 21263208-G-A ***
23425088-G-A 21263202-G-A ***
22315961-C-T 20154075-C-T DYZ19 ***
21929600-G-GTATA 19767714-G-GTATA 12×TA***
7269610-CTTTTT-C,CTTTT 7401569-CTTTTT-C,CTTTT 22×T***
21373440-C-A 19211554-C-A ***
10935559-G-A,C ***
14426031-C-A 12305306-C-A ***
18725174-C-A 16613294-C-A ***
7204763-C-A 7336722-C-A ***
23146128-C-A 20984242-C-A ***
22835383-C-A 20673497-C-A ***
13593842-G-T 11438166-G-T ***
13485644-T-C 11329968-T-C ***
22774799-G-T 20612913-G-T ***
13273150-C-A 11117474-C-A ***
11031535-C-T ***
17313410-C-A 15201530-C-A ***
22857886-C-A 20696000-C-A ***
13454223-TTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-T 11298547-TTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-T 12×TTCCA***
10657217-C-A ***
2783722-AAAAC-A 2915681-AAAAC-A ***
2841104-CTT-C,CT 2973063-CTT-C,CT 17×T***
10916431-G-A ***
3275841-C-G 3407800-C-G ***
4178194-C-A 4310153-C-A ***
5242491-T-C 5374450-T-C ***
9847316-TTG-G,TT 10009707-TTG-G,TT ***
9798291-C-A 9960682-C-A ***
6132388-G-A 6264347-G-A ***
13845541-A-AAATGGAATGGAATGGAATGGAATGG 11724835-A-AAATGGAATGGAATGGAATGGAATGG 8×AATGG***
6983589-CTGTGTGTG-C,CTGTG 7115548-CTGTGTGTG-C,CTGTG 20×TG***
7020497-C-A 7152456-C-A ***
7866924-C-A 7998883-C-A ***
13462170-G-A 11306494-G-A ***
8431228-C-CTT 8563187-C-CTT 17×T***
10796152-C-T ***
17408408-C-A 15296528-C-A ***
15057738-ATT-A,ATTT 12945830-ATT-A,ATTT 18×T***
21714011-C-A 19552125-C-A ***
8290090-C-A 8422049-C-A ***
16627698-G-GTATA 14515818-G-GTATA 12×TA***
18833813-C-A 16721933-C-A ***
10686573-T-C ***
18406007-C-A 16294127-C-A P6_Gap ***
9945863-G-GA,GAA 10108254-G-GA,GAA 16×A***
18144047-C-A 16032167-C-A Y101434 ***
18726667-C-A 16614787-C-A ***
23498080-AT-A,ATT 21336194-AT-A,ATT 19×T***
10866157-C-A ***
17110773-C-A 14998893-C-A ***
15180695-T-C 13068781-T-C ***
17014810-C-A 14902930-C-A 6×TAAA***
17014804-C-A 14902924-C-A ***
17004875-C-A 14892995-C-A ***
8462064-C-A 8594023-C-A 26×A***
13257942-G-GT 11102266-G-GT 9×T***
16849637-A-G 14737757-A-G ***
16374670-C-A 14262790-C-A ***
15948015-C-A 13836135-C-A ***
15677933-C-CAAA 13566053-C-CAAA 21×A***
15504044-C-A 13392164-C-A ***
14844868-C-A 12732934-C-A ***
15418572-A-G 13306692-A-G ***
15264068-C-A 13152158-C-A ***
9159649-C-A 9322040-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 301541925158975692647485278
Used in age calculations925158975692647485278
Counts of SNPs1818
Variant counts last updated 2019-08-26 23:03:24.



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