Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > A5001 > Y46504

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
301541
BigY3
301541
10747663-G-T A+
20539408-G-A 18377522-G-A P5_Dst A+
27919971-C-G 25773824-C-G P1_Y2 A+
56855793-A-T A*
19784193-T-G 17672313-T-G P5_Prx A*
20628329-G-T 18466443-G-T P4_Prx A*A*
5635495-C-T 5767454-C-T A*
20649646-A-G 18487760-A-G P4_Prx A*A*
19640370-C-T 17528490-C-T P5_Prx A*
58971877-T-C 56825730-T-C A*
18304308-C-T 16192428-C-T P6_Prx A*
59017068-G-C 56870921-G-C A*
56825767-T-G **A*
5772260-A-G 5904219-A-G A*
16167355-T-TAC 14055475-T-TAC P8_Dst 23×ACA*
5434160-G-A 5566119-G-A FGC82306 A*
20421899-T-G 18260013-T-G P5_Dst A*
3062052-T-G 3194011-T-G A*
3433994-A-G 3565953-A-G A*
20777725-G-C 18615839-G-C P4_Prx A*
19757878-A-C 17645998-A-C P5_Prx A*
5612900-C-T 5744859-C-T A*
26363613-G-T 24217466-G-T P1_Y1 A*
6343977-G-A 6475936-G-A A*A*
56842960-G-T A*
56832683-C-CCTTTT A*
4185600-G-C 4317559-G-C A*
2971139-T-A 3103098-T-A *A*
27808519-G-A 25662372-G-A P1_Y2 **+
28030744-CTT-C 25884597-CTT-C P1_Y2 ++
7419939-A-G 7551898-A-G BY65125 YY++
10748189-G-A FT87518 ***+
7792356-C-G 7924315-C-G BY67673 YY++
23539877-T-C 21377991-T-C BY146068 YY++
8471651-AG-A 8603610-AG-A ++
3339422-A-G 3471381-A-G FT35697 +
10687794-A-C **+
4199915-C-A 4331874-C-A FT35873 +
5303039-T-C 5434998-T-C FT36111 +
24472783-A-G 22326636-A-G BY150202 Y++
15216896-G-T 13104982-G-T BY100216 Y++
6979311-A-G 7111270-A-G BY62691 YY++
5932644-T-C 6064603-T-C FT36248 +
16925501-C-T 14813621-C-T BY111163 YY++
15164371-C-G 13052457-C-G BY99999 YY++
14828639-C-G 12716706-C-G FT36899 YY**+
14651468-C-T 12539533-C-T BY96981 YY++
17713361-G-A 15601481-G-A BY116870 YY++
18037437-A-G 15925557-A-G BY119366 YY++
19311779-C-A 17199899-C-A BY128147 YY++
23424859-T-C 21262973-T-C BY145206 YY++
19417091-A-T 17305211-A-T BY128918 YY++
14002527-C-T 11881821-C-T BY92209 YY++
13316052-C-T 11160376-C-T FT87521 **+
21880612-A-G 19718726-A-G BY136162 YY++
6803143-A-T 6935102-A-T BY61409 YY++
16509111-G-C 14397231-G-C BY108257 YY++
22208782-C-T 20046896-C-T BY138479 YY++
13252579-C-T 11096903-C-T FT87519 +
5986010-T-A 6117969-T-A FT36259 +
10747701-C-T +
6614962-C-T 6746921-C-T FT36344 +
14688370-CA-C 12576436-CA-C +
28465748-C-T 26319601-C-T FT37990 +
10747688-C-G +
10747698-T-C +
16273200-G-A 14161320-G-A FT37070 Y+
16426405-G-C 14314525-G-C FT37097 Y+
13224618-A-G 11068942-A-G FT87516 +
13855663-TG-T 11734957-TG-T +
10932638-T-C FT87517 +
4179295-T-C 4311254-T-C *
3403730-G-GAA 3535689-G-GAA 10×A*
18504794-G-A 16392914-G-A P6_Dst *
22509992-CT-C 20348106-CT-C DYZ19 *
3427775-C-T 3559734-C-T FGC48408 *
3425715-A-G 3557674-A-G *
6483134-T-A 6615093-T-A *
4210811-G-T 4342770-G-T *
5631575-C-T 5763534-C-T *
5458854-A-C 5590813-A-C *
4210874-T-C 4342833-T-C *
3449186-AAT-A 3581145-AAT-A *
4473474-A-AT 4605433-A-AT *
2922688-G-A 3054647-G-A *
4857187-T-C 4989146-T-C *
5198636-T-C 5330595-T-C *
5675520-C-CT 5807479-C-CT *
5567387-A-G 5699346-A-G PF6007 *
5589971-C-T 5721930-C-T *
3403707-C-A 3535666-C-A *
58995875-C-T 56849728-C-T *
9640889-T-TTGTG 9803280-T-TTGTG IR3_Prx 22×TG*
7611640-T-TACAC 7743599-T-TACAC 16×AC*
5198736-T-TA 5330695-T-TA *
5772169-A-G 5904128-A-G *
13960586-A-AGGAT 11839880-A-AGGAT 13×GGAT*
7643541-AGGAAGGGAAGGGAAG-A 7775500-AGGAAGGGAAGGGAAG-A 16×GGAAG*
6517443-CT-C 6649402-CT-C 10×T*
5095471-T-C 5227430-T-C *
10880295-A-ACCATT *
5567334-A-G 5699293-A-G *
13246074-C-G 11090398-C-G *
10791331-C-A **
13873997-C-A 11753291-C-A **
13859053-C-A 11738347-C-A **
13856322-G-A 11735616-G-A **
13856321-T-C 11735615-T-C **
13748346-G-T 11592670-G-T **
13856313-G-C 11735607-G-C **
13839777-A-C 11719071-A-C **
13798616-G-A 11677910-G-A **
11673765-G-A **
13722513-G-T 11566837-G-T **
13721059-A-T 11565383-A-T **
13712604-G-T 11556928-G-T **
13628818-C-A 11473142-C-A **
13506980-C-A 11351304-C-A **
13888546-G-T 11767840-G-T **
14264437-C-A 12143731-C-A **
14078822-A-G 11958116-A-G **
9986267-G-T 10148658-G-T **
15662965-T-C 13551085-T-C **
15608207-C-A 13496327-C-A **
15478841-C-A 13366961-C-A **
15399517-C-A 13287637-C-A **
9974320-C-A 10136711-C-A **
25994963-A-T 23848816-A-T P1_Y1 **
15047846-T-C 12935937-T-C **
14831898-T-C 12719965-T-C **
14757641-C-A 12645710-C-A **
14100273-C-A 11979567-C-A **
14719760-G-T 12607828-G-T **
14718622-G-A 12606690-G-A **
14716563-C-A 12604631-C-A **
10663896-C-A **
14532610-C-A 12420811-C-A **
14527750-G-A 12415951-G-A **
14343917-C-A 12223212-C-A **
10685484-C-A **
13491175-C-A 11335499-C-A **
13328801-C-A 11173125-C-A **
13456848-A-C 11301172-A-C **
10774444-C-A **
10917707-C-T **
10917705-A-T **
10914598-G-A **
10754737-T-G **
10873053-C-A **
10870197-T-C **
10772540-C-T **
10868979-A-T **
10863613-T-G **
10692184-C-A **
10863606-C-A **
10862571-C-A **
10844442-C-T **
10783038-T-C **
10827159-C-A **
10825292-T-A **
10822935-T-G **
10784485-C-A **
10819959-C-A **
10917709-C-T **
10918820-C-A **
13441562-C-A 11285886-C-A **
11001528-T-G **
28078689-TA-T 25932542-TA-T P1_Y2 11×A**
10687756-A-C **
13229879-C-A 11074203-C-A **
13221963-T-G 11066287-T-G **
11038057-C-A **
11034090-T-C **
11034047-C-T **
11030716-C-A **
11014117-T-A **
10992384-C-A **
10939101-C-T **
10988834-C-A **
10988832-C-A **
10976765-C-T **
15824118-C-A 13712238-C-A **
10976756-T-C **
10968072-C-A **
10939146-G-A **
10688065-CT-C **
10939109-C-T **
15761020-C-A 13649140-C-A **
17374391-G-T 15262511-G-T **
16005527-T-A 13893647-T-A **
22914609-G-A 20752723-G-A **
23793493-A-G 21631607-A-G **
23435894-G-T 21274008-G-T **
23386469-C-A 21224583-C-A **
23293599-TATA-T 21131713-TATA-T **
23252692-G-C 21090806-G-C **
23188946-G-T 21027060-G-T **
22993247-C-A 20831361-C-A **
22979257-C-A 20817371-C-A **
22955862-C-A 20793976-C-A **
22811688-A-C 20649802-A-C **
23870949-G-A 21709063-G-A **
22590713-C-T 20428827-C-T **
22590694-G-A 20428808-G-A **
22581155-C-A 20419269-C-A **
22436825-C-T 20274939-C-T DYZ19 **
22341098-T-C 20179212-T-C DYZ19 **
22210584-T-C 20048698-T-C **
22205715-C-A 20043829-C-A **
22067631-T-G 19905745-T-G **
21803761-G-T 19641875-G-T **
21583113-C-A 19421227-C-A **
23804524-C-A 21642638-C-A **
24247437-C-A 22101290-C-A P3_b1 **
21502245-T-G 19340359-T-G **
28760791-C-A 26614644-C-A **
10687804-A-C **
20453583-A-T 18291697-A-T P5_Dst **
18344339-T-A 16232459-T-A P6_Prx **
5756916-G-GTA 5888875-G-GTA 8×TA**
24280866-A-T 22134719-A-T P3_t1 **
2651919-G-C 2783878-G-C **
19765794-G-T 17653914-G-T P5_Prx **
30137-G-T **
56842953-T-C **
28716280-C-A 26570133-C-A **
24535237-G-T 22389090-G-T P3_t2 **
28688316-C-G 26542169-C-G **
28496057-C-A 26349910-C-A **
28496054-C-A 26349907-C-A **
13534157-A-C 11378481-A-C **
27823795-G-T 25677648-G-T P1_Y2 **
27540970-A-C 25394823-A-C P1_Y2 **
26355370-T-C 24209223-T-C P1_Y1 **
26140020-G-T 23993873-G-T P1_Y1 **
26124473-AG-A 23978326-AG-A P1_Y1 **
24595357-T-C 22449210-T-C P3_t2 **
21532683-C-A 19370797-C-A **
21408325-C-A 19246439-C-A **
16079255-A-AT 13967375-A-AT **
6112046-A-C 6244005-A-C **
18186905-C-A 16075025-C-A **
18156891-C-A 16045011-C-A **
18035950-G-T 15924070-G-T **
17942227-C-A 15830347-C-A **
17927480-C-A 15815600-C-A **
17913141-C-A 15801261-C-A **
17770512-C-A 15658632-C-A **
17581329-C-A 15469449-C-A **
17428345-G-T 15316465-G-T **
17362738-C-A 15250858-C-A **
18233377-C-A 16121497-C-A **
17353107-C-A 15241227-C-A **
17328979-A-T 15217099-A-T **
17193299-C-A 15081419-C-A **
17038343-C-A 14926463-C-A **
16938201-G-T 14826321-G-T **
16905829-C-A 14793949-C-A **
16860796-G-T 14748916-G-T **
16720482-G-A 14608602-G-A **
16701993-T-C 14590113-T-C Z38093 **
16508667-C-A 14396787-C-A **
18190708-A-C 16078828-A-C **
18614149-C-A 16502269-C-A **
21388741-C-T 19226855-C-T **
19354854-C-A 17242974-C-A **
21384838-G-A 19222952-G-A **
21296641-C-A 19134755-C-A **
21248799-G-T 19086913-G-T **
21148490-A-G 18986604-A-G **
21085807-C-A 18923921-C-A **
20359702-A-C 18197816-A-C P5_Dst **
19714506-G-GAT 17602626-G-GAT P5_Prx **
19522758-T-G 17410878-T-G **
9934941-C-A 10097332-C-A **
19346541-C-A 17234661-C-A **
18825710-G-T 16713830-G-T **
19286435-G-A 17174555-G-A **
19270606-C-A 17158726-C-A **
19226643-AT-A 17114763-AT-A **
19202894-T-C 17091014-T-C **
19129604-C-A 17017724-C-A **
19055462-G-T 16943582-G-T **
18932770-A-G 16820890-A-G **
18926956-C-A 16815076-C-A **
18855848-A-G 16743968-A-G **
18853153-T-G 16741273-T-G **
9944817-C-A 10107208-C-A **
24235387-G-T 22089240-G-T P3_b1 29×T**
9934242-G-A 10096633-G-A **
56829936-ACCATT-A **
9855928-C-A 10018319-C-A **
10653806-C-A **
7163025-C-A 7294984-C-A **
14296413-C-A 12175707-C-A **
28534428-C-A 26388281-C-A **
7240246-C-A 7372205-C-A **
21388726-A-G 19226840-A-G **
10834577-T-G **
10834571-T-C **
11013788-C-A **
10895927-A-ACTTCC **
20694358-C-T 18532472-C-T P4_Prx **
18210823-A-T 16098943-A-T **
20694356-C-A 18532470-C-A P4_Prx **
20694341-C-T 18532455-C-T P4_Prx **
20694307-A-G 18532421-A-G P4_Prx **
20694293-A-G 18532407-A-G P4_Prx **
20694272-T-C 18532386-T-C P4_Prx **
18422616-C-A 16310736-C-A P6_Gap **
3732609-C-A 3864568-C-A **
16692117-CAAA-C 14580237-CAAA-C 28×A**
28791258-GCGTGC-G 26645111-GCGTGC-G **
28791251-A-C 26645104-A-C **
28791247-T-G 26645100-T-G **
15741862-G-T 13629982-G-T **
14649266-C-A 12537331-C-A **
10755328-A-C **
7204958-C-A 7336917-C-A **
7106383-C-A 7238342-C-A **
15428337-C-CTT 13316457-C-CTT 10×T**
18080673-C-A 15968793-C-A **
10821746-C-A **
6332660-AC-A 6464619-AC-A IR3_Dst **
20579292-C-T 18417406-C-T P5_Dst **
11010266-T-G **
13722486-G-A 11566810-G-A **
10682812-A-T **
18965974-C-A 16854094-C-A **
4903276-TA-T 5035235-TA-T 10×A**
21211414-G-T 19049528-G-T **
14200492-C-A 12079786-C-A **
10997741-T-A **
23425517-C-A 21263631-C-A **
10755259-A-C **
10755248-A-C **
13940948-G-C 11820242-G-C **
8350636-C-A 8482595-C-A **
10925599-C-T **
9929861-C-A 10092252-C-A **
18660173-C-A 16548293-C-A **
4703095-GA-G 4835054-GA-G 8×A**
27540917-AACAC-A 25394770-AACAC-A P1_Y2 24×AC**
15410849-C-A 13298969-C-A **
10755321-C-T **
3409857-C-A 3541816-C-A **
17474945-C-CT 15363065-C-CT 15×T**
3078483-C-A 3210442-C-A **
56850434-A-C **
56850403-G-A **
56850402-T-A **
56850392-G-A **
19899617-GGAA-G 17787737-GGAA-G P5_Prx **
10761781-CTTCCATTCCA-C **
18879969-G-C 16768089-G-C **
18879961-T-G 16768081-T-G **
58994833-C-T 56848686-C-T **
13839780-G-A 11719074-G-A **
13486667-A-T 11330991-A-T **
6400947-G-T 6532906-G-T **
58996551-C-A 56850404-C-A **
20694273-G-A 18532387-G-A A20636 P4_Prx **
13486616-G-C 11330940-G-C **
58991128-C-A 56844981-C-A **
22732761-C-A 20570875-C-A **
13132793-G-A 10622279-G-A Y65463 FGC75806 **
19414935-G-T 17303055-G-T CTS10344 M5521 PF1783 **
4870623-CGT-C 5002582-CGT-C 8×GT**
2948434-T-C 3080393-T-C Y170 **
23037882-A-C 20875996-A-C F25718 **
5882071-AT-A 6014030-AT-A 10×T**
7474459-T-A 7606418-T-A IR1_L **
24247411-AC-A 22101264-AC-A P3_b1 **
10894696-C-A **
11020166-C-A **
3965397-C-A 4097356-C-A **
24503106-C-CAA 22356959-C-CAA 16×A**
10829372-T-C **
10776174-C-G **
3435987-C-A 3567946-C-A **
28793782-T-C 26647635-T-C **
10686521-C-G **
13255202-C-A 11099526-C-A **
13486651-G-A 11330975-G-A **
13486624-C-T 11330948-C-T **
15940299-T-A 13828419-T-A **
10785582-C-A **
10755284-C-T **
13722519-C-G 11566843-C-G **
13722497-C-T 11566821-C-T **
10895908-C-A **
10895902-G-A **
10895901-A-C **
10895895-G-C **
10895893-T-C **
11643683-G-A **
14688976-C-A 12577042-C-A **
3252591-C-A 3384550-C-A **
21388738-T-C 19226852-T-C **
14912048-C-A 12800115-C-A **
9955473-C-A 10117864-C-A **
13856339-A-T 11735633-A-T **
4311605-C-A 4443564-C-A **
5871910-C-A 6003869-C-A **
5866237-G-T 5998196-G-T **
5832784-C-A 5964743-C-A **
5761372-C-A 5893331-C-A **
5454834-C-A 5586793-C-A **
5213997-C-CA 5345956-C-CA **
5213992-CCA-C 5345951-CCA-C **
5213956-G-A 5345915-G-A **
5053617-G-T 5185576-G-T **
4920066-C-A 5052025-C-A **
4351590-T-C 4483549-T-C **
4243694-C-A 4375653-C-A **
6114889-C-A 6246848-C-A **
4230077-C-A 4362036-C-A **
4158353-G-T 4290312-G-T **
4144409-C-A 4276368-C-A **
4079371-C-A 4211330-C-A **
3970643-G-T 4102602-G-T **
3914733-C-A 4046692-C-A **
3732801-G-T 3864760-G-T **
3674621-G-T 3806580-G-T **
3670798-G-T 3802757-G-T **
3638267-G-T 3770226-G-T **
3467279-C-A 3599238-C-A **
3309493-G-T 3441452-G-T FT112777 **
5923851-C-A 6055810-C-A **
6145390-T-C 6277349-T-C IR3_Dst **
2948006-C-A 3079965-C-A **
8253686-C-A 8385645-C-A **
9929782-A-G 10092173-A-G **
9887723-G-T 10050114-G-T **
9847476-T-A 10009867-T-A **
9764313-A-C 9926704-A-C **
9513193-T-G 9675584-T-G **
9089017-A-C 9251408-A-C **
9120175-C-A **
9108804-G-T **
8786709-G-C 8918668-G-C **
8658762-C-A 8790721-C-A **
8342986-C-A 8474945-C-A **
7755112-G-T 7887071-G-T **
6183346-G-T 6315305-G-T IR3_Dst **
7397635-A-G 7529594-A-G **
7322614-C-A 7454573-C-A **
7319087-C-A 7451046-C-A **
7133986-C-A 7265945-C-A **
7117052-C-A 7249011-C-A **
7116998-C-A 7248957-C-A **
7094338-T-C 7226297-T-C **
7081742-C-A 7213701-C-A **
6977077-C-A 7109036-C-A **
6707454-C-A 6839413-C-A **
6645471-C-A 6777430-C-A **
6553414-G-T 6685373-G-T **
3274776-C-A 3406735-C-A **
4438411-A-T 4570370-A-T **
26514952-C-CAT 24368805-C-CAT P1_Y1 **
9446221-C-A 9608612-C-A **
10753555-A-T **
10653368-G-A **
7349215-C-A 7481174-C-A **
13221977-A-C 11066301-A-C **
10753529-C-G **
5213970-C-T 5345929-C-T **
8822646-C-A 8954605-C-A **
10948473-CTCCAT-C **
13872777-C-A 11752071-C-A **
4582393-C-A 4714352-C-A **
13856361-T-G 11735655-T-G **
15497619-C-A 13385739-C-A **
18965967-C-A 16854087-C-A **
28761231-A-C 26615084-A-C **
2843863-C-A 2975822-C-A **
2817150-C-A 2949109-C-A **
13856344-A-T 11735638-A-T **
13856357-G-GCACTT 11735651-G-GCACTT **
2685685-T-G 2817644-T-G **
2852779-A-C 2984738-A-C **
3845149-G-GA 3977108-G-GA ***
7204763-C-A 7336722-C-A ***
10983971-A-C ***
10983966-A-C ***
5268742-T-TAA 5400701-T-TAA 19×A***
17408408-C-A 15296528-C-A ***
7020497-C-A 7152456-C-A ***
15504044-C-A 13392164-C-A ***
4376142-CAAAAAAAA-C,CAAAAAA 4508101-CAAAAAAAA-C,CAAAAAA 26×A***
4983777-CTTTTT-C,CTT 5115736-CTTTTT-C,CTT 22×T***
15690773-C-A 13578893-C-A ***
13992191-CA-C,CAA 11871485-CA-C,CAA 22×A***
5198612-G-A 5330571-G-A ***
6983589-CTGTGTGTG-C,CTGTG 7115548-CTGTGTGTG-C,CTGTG 20×TG***
18725174-C-A 16613294-C-A ***
15677933-C-CAAA 13566053-C-CAAA 21×A***
15948015-C-A 13836135-C-A ***
13449764-TATTCCATTCT-T,TATTCCATTCC 11294088-TATTCCATTCT-T,TATTCCATTCC ***
21373440-C-A 19211554-C-A ***
7866924-C-A 7998883-C-A ***
17004875-C-A 14892995-C-A ***
22835383-C-A 20673497-C-A ***
56834766-A-G ***
13845541-A-AAATGGAATGGAATGGAATGGAATGG 11724835-A-AAATGGAATGGAATGGAATGGAATGG 8×AATGG******
28613771-CTTTT-C 26467624-CTTTT-C 16×T***
3542458-G-A 3674417-G-A ***
4248747-T-C 4380706-T-C ***
9847316-TTG-G,TT 10009707-TTG-G,TT ***
17239290-TTATA-T 15127410-TTATA-T 17×TA******
9798291-C-A 9960682-C-A ***
22484671-C-A 20322785-C-A DYZ19 ***
4202760-G-T 4334719-G-T ***
9159649-C-A 9322040-C-A ***
13480377-C-A 11324701-C-A A17123 ***
59011559-C-T 56865412-C-T ***
59018024-G-C 56871877-G-C ***
17014804-C-A 14902924-C-A ***
17014810-C-A 14902930-C-A 6×TAAA***
16374670-C-A 14262790-C-A ***
17110773-C-A 14998893-C-A ***
21929600-G-GTATA 19767714-G-GTATA 12×TA***
22774799-G-T 20612913-G-T ***
10916431-G-A ***
15882074-CA-C 13770194-CA-C 25×A***
18717876-T-TAA 16605996-T-TAA 16×A***
23146128-C-A 20984242-C-A ***
15206182-TAA-T 13094268-TAA-T 14×A***
9847289-ATTTT-A,ATTT 10009680-ATTTT-A,ATTT 28×T***
22147816-TTTCTT-T,TTTCTC 19985930-TTTCTT-T,TTTCTC ***
9945863-G-GA,GAA 10108254-G-GA,GAA 16×A***
23425088-G-A 21263202-G-A ***
8431228-C-CTT 8563187-C-CTT 17×T***
16627698-G-GTATA 14515818-G-GTATA 12×TA***
13273150-C-A 11117474-C-A ***
14844868-C-A 12732934-C-A ***
4178194-C-A 4310153-C-A ***
10686573-T-C ***
13485644-T-C 11329968-T-C ***
10935559-G-A,C ***
22598298-C-A 20436412-C-A ***
13593842-G-T 11438166-G-T ***
18726667-C-A 16614787-C-A ***
16849637-A-G 14737757-A-G ***
23498080-AT-A,ATT 21336194-AT-A,ATT 19×T***
13454223-TTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-T 11298547-TTTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA-T 12×TTCCA***
22315961-C-T 20154075-C-T DYZ19 ***
10866157-C-A ***
14426031-C-A 12305306-C-A ***
22103840-C-A 19941954-C-A ***
2783722-AAAAC-A 2915681-AAAAC-A ***
2841104-CTT-C,CT 2973063-CTT-C,CT 17×T***
13257942-G-GT 11102266-G-GT 9×T***
3275841-C-G 3407800-C-G ***
8462064-C-A 8594023-C-A 26×A***
23425094-G-A 21263208-G-A ***
8290090-C-A 8422049-C-A ***
4403543-GA-G 4535502-GA-G 8×A***
6132388-G-A 6264347-G-A ***
8760517-CTTTTT-C,CTT 8892476-CTTTTT-C,CTT 20×T***
6440991-TAA-T 6572950-TAA-T 19×A***
15418572-A-G 13306692-A-G ***
10677440-C-A ***
18144047-C-A 16032167-C-A Y101434 ***
19547815-TAAAA-T 17435935-TAAAA-T 16×A***
56858274-T-C ***
7434999-C-A 7566958-C-A ***
56838623-C-G ***
15264068-C-A 13152158-C-A ***
28754529-C-A 26608382-C-A ***
17313410-C-A 15201530-C-A ***
23572434-C-A 21410548-C-A ***
15180695-T-C 13068781-T-C ***
18406007-C-A 16294127-C-A P6_Gap ***
22857886-C-A 20696000-C-A ***
10796152-C-T ***
18833813-C-A 16721933-C-A ***
21409460-CAAAA-C 19247574-CAAAA-C 30×A***
5242491-T-C 5374450-T-C ***
15057738-ATT-A,ATTT 12945830-ATT-A,ATTT 18×T***
11031535-C-T ***
13462170-G-A 11306494-G-A ***
10657217-C-A ***
21714011-C-A 19552125-C-A ***
10693377-AGCACC-A,ACTCCA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 301541925158975692647485278
Kit: 3015411484828593349368295279
Used in age calculations1484828593349368295279
Counts of SNPs2119
Variant counts last updated 2020-02-01 03:26:43.



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