Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5625 > L226

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
174394
BigY2
174394
26094269-G-GT 23948122-G-GT P1_Y1 13×TA*
20041932-A-C 17930052-A-C P5_Prx A*
20643241-C-CAT 18481355-C-CAT P4_Prx 8×ATA*
19894835-A-G 17782955-A-G P5_Prx ***A*
14435448-C-G 12314721-C-G Y***A*
19731955-T-G 17620075-T-G P5_Prx A*
20773384-A-C 18611498-A-C P4_Prx A*
13686949-A-G 11531273-A-G A*
19874215-A-AT 17762335-A-AT P5_Prx 10×TA*
19669615-G-C 17557735-G-C P5_Prx A*
6113872-A-C 6245831-A-C A*
20629832-G-GT 18467946-G-GT P4_Prx 9×TA*
19900071-A-AT 17788191-A-AT P5_Prx 10×TA*
23176799-A-G 21014913-A-G Y11×GAAGA*
13449735-A-G 11294059-A-G A*
26154429-T-TA 24008282-T-TA P1_Y1 10×AA*
19875563-A-C 17763683-A-C P5_Prx A*
26002428-T-C 23856281-T-C P1_Y1 ***A*
28816989-T-A 26670842-T-A A*
25968081-T-G 23821934-T-G P1_Y1 A*
26232459-G-T 24086312-G-T P1_Y1 ***A*
28817391-G-T 26671244-G-T A*
23176797-G-A 21014911-G-A YA*
28816205-T-C 26670058-T-C A*
18353712-A-AT 16241832-A-AT P6_Prx 9×TA*
13448418-C-T 11292742-C-T A*
6213420-C-CT 6345379-C-CT IR3_Dst 10×TA*
22207601-A-T 20045715-A-T DC84 YY++
22004834-G-A 19842948-G-A DC83 YY++
21706673-G-A 19544787-G-A DC82 YY++
21043730-C-G 18881844-C-G DC81 Y++
18918140-C-T 16806260-C-T DC80 YY++
17923445-A-C 15811565-A-C DC79 YY++
16655291-A-C 14543411-A-C DC78 YY++
12297437-GTATATA-G +
9849533-A-C 10011924-A-C DC77 YY++
8537419-T-C 8669378-T-C DC73 YY++
2651665-T-C 2783624-T-C DC70 Y++
2887494-C-G 3019453-C-G DC71 YY++
7625424-A-C 7757383-A-C DC72 YY++
9849529-G-A 10011920-G-A DC76 YY++
23784572-G-A 21622686-G-A DC85 Y++
9849528-T-C 10011919-T-C DC75 YY++
9849527-G-T 10011918-G-T DC74 YY++
24244600-C-T 22098453-C-T P3_b1 19×T*
13620461-AAT-A,AA 11464785-AAT-A,AA ****
8428944-CAAAAAAA-C 8560903-CAAAAAAA-C 25×A****
22238236-G-A 20076350-G-A DYZ19 ****
22318596-G-C 20156710-G-C DYZ19 ****
22335029-G-A 20173143-G-A DYZ19 ****
14492829-G-T 12381026-G-T **
14495815-C-A 12384012-C-A **
12374886-C-A **
14493084-C-A 12381281-C-A **
14493188-G-C 12381385-G-C **
36607-G-A **
14421731-C-A 12301006-C-A **
14259391-G-T 12138685-G-T **
14168079-C-A 12047373-C-A **
14068594-C-A 11947888-C-A **
14034928-C-G 11914222-C-G **
14011674-C-A 11890968-C-A **
13998056-C-A 11877350-C-A **
13996065-G-A 11875359-G-A **
13974696-T-C 11853990-T-C FGC2266 **
13960480-C-A 11839774-C-A **
13938423-C-A 11817717-C-A **
13926414-G-A 11805708-G-A **
11675901-G-A **
11672303-G-T **
14511980-C-A 12400185-C-A **
15049915-T-C 12938006-T-C **
14552510-C-A 12440711-C-A **
16065223-C-A 13953343-C-A **
15815261-C-T 13703381-C-T **
15815285-C-A 13703405-C-A **
15815288-A-T 13703408-A-T **
15815292-C-G 13703412-C-G Y41188 **
15815293-C-T 13703413-C-T **
15816497-A-G 13704617-A-G **
16062931-C-G 13951051-C-G **
16119961-T-TTCTG 14008081-T-TTCTG P8_Prx **
15599520-C-A 13487640-C-A **
16146425-G-T 14034545-G-T P8_Dst **
16184310-ATTT-A 14072430-ATTT-A 15×T**
16344848-C-A 14232968-C-A **
16394621-C-A 14282741-C-A **
16411045-C-A 14299165-C-A **
16550964-C-A 14439084-C-A **
16612618-T-C 14500738-T-C **
15735546-T-C 13623666-T-C **
15533655-T-G 13421775-T-G **
14563185-C-G 12451385-C-G **
14964140-T-C 12852215-T-C **
14567980-C-A 12456180-C-A **
14688315-G-T 12576381-G-T **
14716308-C-G 12604375-C-G **
14717854-G-T 12605922-G-T **
14740821-G-T 12628889-G-T **
14755819-C-A 12643888-C-A **
14959942-G-T 12848017-G-T **
14986581-G-A 12874649-G-A **
15450073-CTTT-C 13338193-CTTT-C 15×T**
11662540-C-T **
15281732-C-T 13169831-C-T **
15285747-C-A 13173846-C-A **
15334836-C-A 13222954-C-A **
15366302-A-C 13254422-A-C **
15429645-C-A 13317765-C-A **
15442508-G-A 13330628-G-A **
11663474-C-A **
11031622-A-ATTCCG **
11654148-C-A **
10882806-C-A **
10858862-C-T **
10858865-C-T **
10858866-A-G **
10864001-T-C **
10873650-C-A **
10874945-T-C **
10887110-C-A **
10851802-G-T **
10894110-C-A **
10898883-TCC-T **
10914501-G-T **
10921512-A-ATTCCATCCCATCCCG **
10930064-C-T **
10930106-C-A **
10856720-C-T **
10824973-T-A **
10940222-C-A **
10775870-C-A **
10677865-G-T **
10690193-G-T **
10744737-C-A **
10763203-T-C **
10764921-C-A **
10770366-C-A **
10782841-T-C **
10808010-GCATTC-G **
10798258-C-A **
10801449-T-C **
10801449-T-TTGAGA **
10801456-C-T **
10801463-G-T **
10803450-C-A **
10933362-G-T **
10951001-C-A **
13611215-G-A 11455539-G-A **
13460719-C-A 11305043-C-A **
13236303-T-G 11080627-T-G **
13264090-G-T 11108414-G-T **
13264131-A-C 11108455-A-C **
13266492-C-A 11110816-C-A **
13291514-C-A 11135838-C-A **
13335372-C-A 11179696-C-A **
13480642-G-A 11324966-G-A **
13207200-TGCATG-T 11051524-TGCATG-T **
13515979-A-G 11360303-A-G **
13525188-G-T 11369512-G-T **
13556072-C-A 11400396-C-A **
13558273-A-C 11402597-A-C **
13583123-T-C 11427447-T-C **
13604996-C-A 11449320-C-A **
13214133-G-T 11058457-G-T **
16652416-C-A 14540536-C-A **
10951160-C-T **
10969387-G-T **
10951190-C-A **
10951236-A-G **
10955506-C-CTGCCA **
10969373-T-C **
10969374-A-C **
10969375-C-CT **
10974287-CCATTGCAA-C **
11030293-A-G **
10983658-G-T **
10988414-C-A **
10992348-T-C **
10995515-C-A **
11005206-C-A **
11021282-C-A **
11027942-T-A **
16652354-C-A 14540474-C-A **
17740002-T-C 15628122-T-C **
16653250-A-G 14541370-A-G **
22767663-C-A 20605777-C-A **
25532959-G-T 23386812-G-T P1_gr1 **
23953244-C-A 21807097-C-A **
21751151-CT-C **
23900152-C-T 21738266-C-T **
23786602-A-C 21624716-A-C **
23779844-C-A 21617958-C-A **
23569632-A-T 21407746-A-T **
23442616-A-G 21280730-A-G **
23341688-G-T 21179802-G-T **
23341613-C-T 21179727-C-T **
23198292-T-C 21036406-T-C **
22965631-C-A 20803745-C-A **
22884611-G-A 20722725-G-A **
22880380-C-A 20718494-C-A **
22703594-TC-T 20541708-TC-T **
26010210-C-A 23864063-C-A P1_Y1 **
22690231-C-A 20528345-C-A **
22640448-G-A 20478562-G-A **
22520783-C-A 20358897-C-A **
22316227-A-C 20154341-A-C DYZ19 **
22235192-T-A 20073306-T-A DYZ19 **
22235191-T-C 20073305-T-C DYZ19 **
22235160-T-A 20073274-T-A DYZ19 **
22170935-C-A 20009049-C-A **
22011480-C-A 19849594-C-A **
21939762-C-A 19777876-C-A **
21853663-A-T 19691777-A-T **
21852463-G-A 19690577-G-A **
21849974-G-T 19688088-G-T **
21849820-T-A 19687934-T-A **
25883922-G-GGTCT 23737775-G-GGTCT P1_Y1 **
27007872-A-G 24861725-A-G P1_r4 **
21409451-A-C 19247565-A-C **
28600464-T-A 26454317-T-A **
56886859-T-A **
56874214-C-T **
56873242-A-C **
56869878-GA-G **
56847801-G-T **
56847191-T-C **
56731212-G-T **
28780162-G-A 26634015-G-A **
28773013-C-A 26626866-C-A **
28724174-A-ATTT 26578027-A-ATTT 20×T**
28656636-C-G 26510489-C-G **
28645191-C-A 26499044-C-A **
28628398-TTATATA-T 26482251-TTATATA-T 17×TA**
28610959-C-A 26464812-C-A **
28600461-T-G 26454314-T-G **
27007882-T-G 24861735-T-G P1_r4 **
28600451-G-A 26454304-G-A **
28598244-G-A 26452097-G-A **
28577950-TACAC-T 26431803-TACAC-T 17×AC**
28546654-T-G 26400507-T-G **
28543173-C-A 26397026-C-A **
28505471-C-A 26359324-C-A **
28503190-G-T 26357043-G-T **
28077610-T-TC 25931463-T-TC P1_Y2 **
27985044-AT-A 25838897-AT-A P1_Y2 **
27886867-A-ACTGT 25740720-A-ACTGT P1_Y2 **
27724340-C-G 25578193-C-G P1_Y2 **
27724329-T-G 25578182-T-G P1_Y2 **
27724291-G-C 25578144-G-C P1_Y2 **
27398509-TC-T 25252362-TC-T P1_g3 **
21422092-A-C 19260206-A-C **
21346413-G-T 19184527-G-T **
16675384-T-C 14563504-T-C **
17504762-G-A 15392882-G-A **
18465598-G-A 16353718-G-A P6_Dst **
18190240-T-G 16078360-T-G **
18185466-T-C 16073586-T-C **
18101575-A-G 15989695-A-G **
17953836-C-A 15841956-C-A **
17953771-A-C 15841891-A-C **
17831207-C-CT 15719327-C-CT 17×T**
10032602-C-A 10194993-C-A **
17698219-T-A 15586339-T-A **
17636309-G-A 15524429-G-A **
17548618-C-A 15436738-C-A **
17545091-G-A 15433211-G-A **
17535380-C-A 15423500-C-A **
17505137-C-A 15393257-C-A **
17317580-A-G 15205700-A-G **
18626297-G-T 16514417-G-T **
17313451-C-A 15201571-C-A **
17247151-C-A 15135271-C-A **
17231333-C-A 15119453-C-A **
17231318-G-A 15119438-G-A **
17218690-C-A 15106810-C-A **
17153945-C-A 15042065-C-A **
17122459-A-C 15010579-A-C **
17122451-A-C 15010571-A-C **
16999159-A-T 14887279-A-T **
16998886-G-A 14887006-G-A **
16974254-C-A 14862374-C-A **
16884016-A-T 14772136-A-T **
16814204-C-A 14702324-C-A **
16708468-G-T 14596588-G-T **
18618494-C-A 16506614-C-A **
18928566-AATAC-A 16816686-AATAC-A **
21315213-A-G 19153327-A-G **
20265348-T-C 18103462-T-C P5_Dst **
21073031-T-C 18911145-T-C **
20986789-A-AC 18824903-A-AC P4_Dst **
20951196-T-TG 18789310-T-TG P4_Dst **
20869263-G-A 18707377-G-A P4_Dst **
20869258-G-T 18707372-G-T P4_Dst **
20869254-G-T 18707368-G-T P4_Dst **
20845410-T-TG 18683524-T-TG P4_Dst **
20667077-T-TC 18505191-T-TC P4_Prx **
20661112-T-TC 18499226-T-TC P4_Prx **
20634949-T-TAA 18473063-T-TAA P4_Prx **
20631071-A-AAG 18469185-A-AAG P4_Prx **
20631055-T-A 18469169-T-A P4_Prx **
20389130-G-C 18227244-G-C P5_Dst **
20362221-T-G 18200335-T-G P5_Dst **
19932018-T-TC 17820138-T-TC P5_Prx **
18956176-C-A 16844296-C-A **
19877655-A-AG 17765775-A-AG P5_Prx **
19733312-C-T 17621432-C-T P5_Prx **
19699940-A-T 17588060-A-T P5_Prx **
19506975-C-A 17395095-C-A **
19438218-A-G 17326338-A-G **
19438154-A-G 17326274-A-G **
19248300-C-A 17136420-C-A **
19129201-C-A 17017321-C-A **
19073734-C-A 16961854-C-A **
19055688-G-A 16943808-G-A **
19031254-A-G 16919374-A-G **
19015625-C-G 16903745-C-G **
18974673-C-A 16862793-C-A **
18972078-C-G 16860198-C-G **
10661568-C-A **
9414267-CT-C 9576658-CT-C **
10028083-C-A 10190474-C-A **
17125158-TA-T 15013278-TA-T 11×A**
3122434-C-A 3254393-C-A **
3089774-TG-T 3221733-TG-T **
2986732-C-A 3118691-C-A **
2967165-G-C 3099124-G-C **
2858856-C-A 2990815-C-A **
2771979-G-T 2903938-G-T **
20650574-T-A 18488688-T-A P4_Prx **
10873693-TTTCCA-T **
6784531-T-G 6916490-T-G **
15420132-CAAAAA-C 13308252-CAAAAA-C 18×A**
10989112-CACTGA-C **
17788844-A-G 15676964-A-G **
5172325-C-A 5304284-C-A **
4142437-C-T 4274396-C-T **
3125500-G-T 3257459-G-T **
10790100-C-A **
10994683-G-A **
9602654-CTTTT-C 9765045-CTTTT-C IR3_Prx 19×T**
7135424-T-C 7267383-T-C **
10989079-C-T **
10987393-C-G **
10987392-T-A **
19739345-A-ACAG 17627465-A-ACAG P5_Prx **
10751180-T-G **
6816546-GAAAA-G 6948505-GAAAA-G 22×A**
4937098-C-A 5069057-C-A **
26414228-C-CA 24268081-C-CA P1_Y1 12×A**
23317687-G-GT 21155801-G-GT **
3123848-G-T 3255807-G-T **
3233897-G-T 3365856-G-T **
10848711-G-T **
3908722-C-A 4040681-C-A **
4276128-G-GT 4408087-G-GT 12×T**
4235610-T-TA 4367569-T-TA 9×A**
4215517-G-T 4347476-G-T **
4208231-C-A 4340190-C-A **
4163055-C-T 4295014-C-T **
4120389-C-A 4252348-C-A **
4109119-G-A 4241078-G-A **
4081650-C-A 4213609-C-A **
4064321-G-A 4196280-G-A **
4057713-A-T 4189672-A-T **
4033319-C-A 4165278-C-A **
3990478-C-A 4122437-C-A **
3934150-T-A 4066109-T-A **
3829241-TA-T 3961200-TA-T **
3309362-C-A 3441321-C-A **
3799247-G-A 3931206-G-A **
3732980-A-T 3864939-A-T **
9999530-T-C 10161921-T-C **
3628117-T-A 3760076-T-A **
3622444-C-A 3754403-C-A **
3610849-CT-C 3742808-CT-C 9×T**
3609564-A-G 3741523-A-G **
3568785-C-A 3700744-C-A **
3480941-G-T 3612900-G-T **
3389309-C-A 3521268-C-A **
3384937-A-G 3516896-A-G **
3346872-A-G 3478831-A-G **
3334895-C-T 3466854-C-T **
18008645-CTTTTT-C 15896765-CTTTTT-C P7_Dst 30×T**
21617605-C-CAA 19455719-C-CAA 23×A**
4316095-C-A 4448054-C-A **
2685634-C-T 2817593-C-T **
9951880-C-A 10114271-C-A **
15815263-G-A 13703383-G-A **
59026666-C-A 56880519-C-A **
59026553-G-T 56880406-G-T **
59016408-CT-C 56870261-CT-C **
17246092-T-C 15134212-T-C **
14033954-GCA-G 11913248-GCA-G **
20815408-C-CATAT 18653522-C-CATAT P4_Gap 22×AT**
19899623-AG-A 17787743-AG-A P5_Prx **
59003917-C-G 56857770-C-G **
16309251-TAA-T 14197371-TAA-T 19×A**
5799828-C-A 5931787-C-A **
4813344-ACT-A 4945303-ACT-A 9×CT**
6024536-TTGTG-T 6156495-TTGTG-T 15×TG**
18042889-C-A 15931009-C-A **
27340965-TG-T 25194818-TG-T P1_g3 **
22651339-C-A 20489453-C-A ****
22352598-T-A 20190712-T-A DYZ19 **
22352594-T-C 20190708-T-C DYZ19 **
9931209-T-G 10093600-T-G **
3851589-G-A 3983548-G-A PF3586 ****
3832233-AACAC-A 3964192-AACAC-A 22×AC**
19788306-C-CA 17676426-C-CA P5_Prx 10×A**
20084456-C-CT 17972576-C-CT P5_Dst 7×TTTCT**
13391697-T-C 11236021-T-C PF515 **
22367070-T-A 20205184-T-A DYZ19 **
22352486-A-T 20190600-A-T DYZ19 **
28702625-T-C 26556478-T-C CTS12779 **
15882061-C-T 13770181-C-T **
27499291-T-G 25353144-T-G P1_Y2 **
11644486-C-A **
10796571-A-C **
6682273-C-A 6814232-C-A **
15541703-T-C 13429823-T-C **
20404470-AAAAAG-A 18242584-AAAAAG-A P5_Dst **
10653466-CCAATA-C **
10653461-C-T **
6277760-G-C 6409719-G-C IR3_Dst **
10796625-C-CA **
10796607-G-T **
10796605-C-A **
10796589-A-G **
10796588-A-G **
10796582-A-C **
10796578-C-A **
10796559-C-T **
5354792-AT-A 5486751-AT-A 16×T**
10796558-T-G **
4213182-C-T 4345141-C-T **
10796585-T-A **
27966907-G-GTA 25820760-G-GTA P1_Y2 10×TA**
20869230-T-TC 18707344-T-TC P4_Dst **
10851177-C-CTATTT **
9952527-C-A 10114918-C-A **
13267431-CAAAA-C 11111755-CAAAA-C 16×A**
28496348-CAAAAAAA-C 26350201-CAAAAAAA-C 18×A**
22662279-G-GT 20500393-G-GT 9×T**
23181437-G-C 21019551-G-C **
15815315-C-T 13703435-C-T **
3732952-CT-C 3864911-CT-C 14×T**
5177121-CA-C 5309080-CA-C 15×A**
4315386-G-T 4447345-G-T **
3706603-C-A 3838562-C-A **
4408235-A-C 4540194-A-C **
6926723-G-T 7058682-G-T **
7296198-G-T 7428157-G-T **
7269800-T-C 7401759-T-C **
7257601-C-A 7389560-C-A **
7257202-C-A 7389161-C-A **
7223198-A-AG 7355157-A-AG **
7223163-C-G 7355122-C-G **
7199443-C-A 7331402-C-A **
7141829-C-A 7273788-C-A **
7140653-C-A 7272612-C-A **
7135406-TTTG-T 7267365-TTTG-T **
6930665-C-A 7062624-C-A **
4412062-A-G 4544021-A-G **
7313415-C-A 7445374-C-A **
6923067-C-T 7055026-C-T **
6903598-G-T 7035557-G-T **
6901164-A-G 7033123-A-G **
6784533-G-A 6916492-G-A **
6784532-C-T 6916491-C-T **
6784518-G-T 6916477-G-T **
6784516-A-C 6916475-A-C **
6714167-A-C 6846126-A-C **
6694671-C-A 6826630-C-A **
6648350-TA-T 6780309-TA-T **
6605414-C-A 6737373-C-A **
6604119-G-T 6736078-G-T **
7308259-C-G 7440218-C-G **
7319335-T-C 7451294-T-C **
6457789-C-A 6589748-C-A **
8694009-C-A 8825968-C-A **
9969713-G-T 10132104-G-T **
9922519-A-C 10084910-A-C **
9910369-A-G 10072760-A-G **
9700711-A-G 9863102-A-G IR3_Prx **
9602677-CT-C 9765068-CT-C IR3_Prx **
9540247-T-TC 9702638-T-TC IR3_Prx **
9508522-G-A 9670913-G-A **
9414421-T-G 9576812-T-G **
9120716-ATT-A **
9111775-A-G **
8739154-A-AAATAAT 8871113-A-AAATAAT 13×AAT**
8661066-CTCCCTAT-C 8793025-CTCCCTAT-C **
7337073-C-A 7469032-C-A **
8159454-C-A 8291413-C-A **
8075097-C-A 8207056-C-A **
8074223-C-A 8206182-C-A **
7898322-C-A 8030281-C-A **
7861671-T-C 7993630-T-C **
7711397-A-G 7843356-A-G **
7632034-A-G 7763993-A-G **
7630006-C-A 7761965-C-A **
7499742-C-A 7631701-C-A IR1_L **
7446883-C-A 7578842-C-A IR1_L **
7428147-C-T 7560106-C-T **
7341441-A-G 7473400-A-G PH624 **
6604116-C-T 6736075-C-T **
6926306-C-A 7058265-C-A **
6267696-T-TAG 6399655-T-TAG IR3_Dst 19×A**
4788362-C-A 4920321-C-A **
5467319-AT-A 5599278-AT-A **
5466703-C-A 5598662-C-A **
5338678-C-A 5470637-C-A **
5243702-T-C 5375661-T-C **
5240845-C-A 5372804-C-A **
5137536-G-T 5269495-G-T **
5114654-G-T 5246613-G-T **
5114564-G-T 5246523-G-T **
5094311-C-A 5226270-C-A **
5061909-G-T 5193868-G-T **
5007689-CAAAA-C 5139648-CAAAA-C 22×A**
5003122-A-G 5135081-A-G **
4902382-C-A 5034341-C-A **
4873969-C-A 5005928-C-A **
4778603-C-A 4910562-C-A **
5683134-C-A 5815093-C-A **
4558304-A-G 4690263-A-G **
4487914-C-A 4619873-C-A **
4523562-A-T 4655521-A-T **
4540115-C-A 4672074-C-A **
4553828-C-A 4685787-C-A **
4553863-C-A 4685822-C-A **
4558287-A-G 4690246-A-G **
4558335-C-T 4690294-C-T **
4655763-C-A 4787722-C-A **
4568465-T-C 4700424-T-C **
4615841-G-T 4747800-G-T **
4633190-A-G 4765149-A-G **
4653196-T-G 4785155-T-G **
4653347-A-C 4785306-A-C **
4655647-C-A 4787606-C-A **
5576754-A-C 5708713-A-C **
4983737-C-A 5115696-C-A **
5685624-G-T 5817583-G-T **
5724217-C-A 5856176-C-A **
6165681-G-GA 6297640-G-GA IR3_Dst **
6088737-A-T 6220696-A-T **
6050652-C-A 6182611-C-A **
5912035-C-A 6043994-C-A **
5960696-A-AT 6092655-A-AT 30×T**
5812163-C-A 5944122-C-A **
5760682-C-A 5892641-C-A **
5856296-G-A 5988255-G-A **
5703270-G-T 5835229-G-T **
5964091-G-T 6096050-G-T **
5996394-G-T 6128353-G-T **
5687472-G-T 5819431-G-T **
5699722-C-A 5831681-C-A **
10997724-C-CAATAT ***
13143380-G-A 10632866-G-A ***
10017998-T-A 10180389-T-A ***
13331412-C-A 11175736-C-A ***
13513507-C-A 11357831-C-A ***
9186925-A-T 9349316-A-T ***
19961776-G-C 17849896-G-C P5_Prx ***
13326039-G-A 11170363-G-A ***
10756862-C-T ***
24884162-C-T 22738015-C-T g1 ***
10677660-CACTC-C,CACTG ***
19250710-A-T 17138830-A-T F23494 ***
56884417-G-T ***
25265702-TACA-T 23119555-TACA-T P2_r1 ***
9936569-A-G 10098960-A-G ***
10672063-C-A ***
56860422-G-T ***
9952060-C-G 10114451-C-G ***
25929232-CT-C 23783085-CT-C P1_Y1 17×T***
9940616-C-A 10103007-C-A ***
58982145-C-G 56835998-C-G ***
13435552-C-A 11279876-C-A ***
13483277-T-A 11327601-T-A ***
13740898-G-C 11585222-G-C ***
13483284-A-C 11327608-A-C ***
10786445-C-G ***
9940615-T-C 10103006-T-C FGC32446 ***
10744224-C-CTCCAT ***
19459321-G-C 17347441-G-C ***
10789812-C-A ***
56860447-G-T ***
14143025-CAAA-C 12022319-CAAA-C 16×A***
10997776-C-T ***
10997759-C-T ***
11677395-T-C ***
6948123-T-G 7080082-T-G ***
23476305-TA-T 21314419-TA-T 10×A***
10937717-A-T ***
11015927-C-A ***
17701559-C-A 15589679-C-A ***
7359743-AATAT-A 7491702-AATAT-A 11×AT***
11027336-CACTCA-C,CACTCC ***
22682646-A-C 20520760-A-C ***
10877796-T-A ***
10877805-C-T ***
18804474-AAGAGAGAGAG-A,AAG 16692594-AAGAGAGAGAG-A,AAG 26×AG***
24928530-A-G 22782383-A-G g1 ***
10880580-G-T ***
10877822-C-A ***
10937716-G-A ***
8673077-C-A 8805036-C-A ***
14831720-G-GTT 12719787-G-GTT 17×T***
14715666-G-T 12603733-G-T ***
8095374-C-A 8227333-C-A ***
8344280-T-C 8476239-T-C ***
10824234-C-A ***
11033268-C-A ***
9079323-G-T 9241714-G-T ***
13860449-C-G 11739743-C-G ***
26714509-C-A 24568362-C-A P1_g2 ***
25259177-T-C 23113030-T-C P2_r1 ***
13302366-C-T 11146690-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1743941093932081000928216906
Kit: 1743941052563583932538184058
Used in age calculations1093932083932538216906
Counts of SNPs1814
Variant counts last updated 2018-06-18 21:15:35.



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