Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > S1688 > U198 > Y22415

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
507060
22289410-T-C 20127524-T-C DYZ19 A*
18370288-C-T 16258408-C-T P6_Prx A*
22286254-G-A 20124368-G-A DYZ19 A*
22136023-C-A 19974137-C-A BY137893 YY+
7963294-G-A 8095253-G-A BY69104 YY+
21908279-A-C 19746393-A-C BY136408 YY+
18729786-G-T 16617906-G-T BY123479 YY+
9444428-G-A 9606819-G-A Y22417 YY+
15379506-TG-T 13267626-TG-T +
17719279-G-C 15607399-G-C JFS0036 YY+
22188064-C-G 20026178-C-G BY138315 YY+
4929977-T-C 5061936-T-C BY58456 +
8467803-A-T 8599762-A-T BY73081 YY+
22440947-G-A 20279061-G-A JFS0034 DYZ19 +
13700105-C-T 11544429-C-T JFS0198 +
22787973-T-A 20626087-T-A JFS0011 YY+
15878573-C-T 13766693-C-T Y31621 YY+
21493611-G-A 19331725-G-A JFS0010 YY+
21907488-T-G 19745602-T-G BY136399 YY+
28008289-AAG-A 25862142-AAG-A P1_Y2 +
16932272-C-G 14820392-C-G BY111198 YY+
16970910-G-T 14859030-G-T BY111521 YY+
6796800-C-A 6928759-C-A BY61363 YY+
9764618-G-A 9927009-G-A BY80877 Y+
18730063-C-A 16618183-C-A JFS0035 YY+
21306691-A-G 19144805-A-G BY131938 YY+
17419908-C-T 15308028-C-T PR2450 Y22180 YY+
22316650-T-G 20154764-T-G DYZ19 *
18414381-AGAAGGAAGGAAG-A 16302501-AGAAGGAAGGAAG-A P6_Gap 15×GAAG*
22280773-T-A 20118887-T-A DYZ19 *
22432847-T-C 20270961-T-C DYZ19 *
14507902-C-A 12396107-C-A **
14379295-G-A 12258591-G-A **
14397578-A-T 12276874-A-T **
14524179-C-A 12412380-C-A **
14432301-C-A 12311574-C-A **
14499493-A-G 12387698-A-G **
14510057-T-A 12398262-T-A **
14467973-C-A 12347242-C-A **
14510128-C-A 12398333-C-A **
12378045-A-G **
12378099-G-T **
14517304-G-A 12405505-G-A **
15066310-C-A 12954401-C-A **
14550224-C-A 12438425-C-A **
15792646-T-A 13680766-T-A **
16480851-A-G 14368971-A-G **
16462730-T-C 14350850-T-C **
16430433-A-G 14318553-A-G **
16319660-T-C 14207780-T-C **
16316782-T-G 14204902-T-G **
16274264-C-T 14162384-C-T **
16180932-CA-C 14069052-CA-C **
16092698-C-A 13980818-C-A **
16084104-C-A 13972224-C-A **
16016879-C-A 13904999-C-A **
15923816-T-C 13811936-T-C **
15823946-CA-C 13712066-CA-C **
15432679-T-G 13320799-T-G **
14689255-A-T 12577321-A-T **
15391224-G-A 13279344-G-A **
15276774-C-A 13164863-C-A **
15177593-TA-T 13065679-TA-T **
15161154-A-T 13049240-A-T **
15157595-C-G 13045682-C-G **
15138090-T-C 13026177-T-C **
15131799-G-T 13019886-G-T **
14302408-AC-A 12181702-AC-A **
15066203-C-A 12954295-C-A **
14908350-C-A 12796417-C-A **
14858804-A-G 12746870-A-G **
14693789-C-A 12581855-C-A **
14339331-C-A 12218626-C-A **
15658152-A-AT 13546272-A-AT **
14224264-C-G 12103558-C-G **
10927088-C-A **
10986386-T-A **
10986371-T-A **
10986366-T-A **
10986356-C-G **
10975443-C-A **
10959096-C-A **
10954518-T-C **
10954513-T-C **
10949541-T-TG **
10943712-G-T **
10919306-C-A **
10986411-C-A **
10888531-C-A **
10884256-C-A **
10884118-C-A **
10882112-T-A **
10879310-T-A **
10873916-C-A **
10872391-CT-C **
10869001-T-C **
10864625-A-T **
10824019-C-A **
16522342-G-C 14410462-G-C **
10986401-C-A **
13198911-G-C 11043235-G-C **
14224257-CG-C 12103551-CG-C **
13846965-G-C 11726259-G-C **
14118258-T-C 11997552-T-C **
14099789-C-A 11979083-C-A **
14093417-C-A 11972711-C-A **
13975763-A-T 11855057-A-T **
13941122-A-G 11820416-A-G **
13936198-GA-G 11815492-GA-G **
16485779-C-A 14373899-C-A **
13934255-C-T 11813549-C-T **
13885520-G-A 11764814-G-A **
13880259-A-G 11759553-A-G **
11672328-G-T **
13207513-A-G 11051837-A-G **
11649181-A-T **
13726004-T-A 11570328-T-A **
13576202-G-T 11420526-G-T **
13472046-A-G 11316370-A-G **
13291326-C-A 11135650-C-A **
13287225-C-A 11131549-C-A **
13276813-C-A 11121137-C-A **
13252149-G-T 11096473-G-T **
13248554-C-A 11092878-C-A **
13229484-C-A 11073808-C-A **
13227145-A-T 11071469-A-T **
16480921-T-A 14369041-T-A **
17269777-A-G 15157897-A-G **
16664567-A-T 14552687-A-T **
22811866-G-T 20649980-G-T **
23321846-G-T 21159960-G-T **
23277208-C-T 21115322-C-T **
23276649-G-A 21114763-G-A **
23137380-A-C 20975494-A-C **
23137357-T-A 20975471-T-A **
23101412-A-T 20939526-A-T **
23036039-T-A 20874153-T-A **
23015805-G-T 20853919-G-T **
22873525-C-A 20711639-C-A **
22854793-G-T 20692907-G-T **
22811205-C-A 20649319-C-A **
23425160-C-A 21263274-C-A **
22810094-C-A 20648208-C-A **
22713016-T-C 20551130-T-C FT13998 **
22662065-C-A 20500179-C-A **
22167899-C-A 20006013-C-A **
21957656-G-A 19795770-G-A **
21957628-T-C 19795742-T-C **
21957611-G-T 19795725-G-T **
21911114-C-A 19749228-C-A **
21603977-A-G 19442091-A-G **
21280833-G-T 19118947-G-T **
23340991-C-A 21179105-C-A **
23623337-G-A 21461451-G-A **
21196668-C-A 19034782-C-A **
28556262-G-A 26410115-G-A **
9228-A-G **
56857635-C-A **
56839441-C-G **
28757978-G-C 26611831-G-C **
28757956-A-G 26611809-A-G **
28643712-A-G 26497565-A-G **
28627861-C-A 26481714-C-A **
28593521-CCCAGT-C 26447374-CCCAGT-C **
28591811-A-G 26445664-A-G **
28564161-C-A 26418014-C-A **
28501720-TA-T 26355573-TA-T **
24241258-A-G 22095111-A-G P3_b1 **
28500964-C-A 26354817-C-A **
27815576-G-T 25669429-G-T P1_Y2 **
27647565-G-C 25501418-G-C P1_Y2 **
27606951-G-T 25460804-G-T P1_Y2 **
27468218-G-T 25322071-G-T P1_Y2 **
26204645-TAC-T 24058498-TAC-T P1_Y1 **
26100868-C-A 23954721-C-A P1_Y1 **
25850818-C-T 23704671-C-T P1_Y1 **
25576951-T-TGA 23430804-T-TGA P1_gr1 **
24624716-G-T 22478569-G-T P3_t2 **
24403436-G-T 22257289-G-T **
21202360-A-G 19040474-A-G **
21014227-T-G 18852341-T-G P4_Dst **
16689835-C-A 14577955-C-A **
17449322-T-A 15337442-T-A **
17648595-T-C 15536715-T-C **
17568190-G-T 15456310-G-T **
17552031-C-A 15440151-C-A **
17547949-C-A 15436069-C-A **
17545020-C-A 15433140-C-A **
17504930-C-A 15393050-C-A **
17467051-C-A 15355171-C-A **
17461973-A-T 15350093-A-T **
17461955-T-C 15350075-T-C **
17449339-T-C 15337459-T-C **
17433953-T-G 15322073-T-G **
17871766-G-C 15759886-G-C **
17375601-C-T 15263721-C-T **
17343596-C-A 15231716-C-A **
17270403-C-A 15158523-C-A **
10808380-C-A **
17257691-G-T 15145811-G-T **
17115173-A-T 15003293-A-T **
17115147-A-G 15003267-A-G **
16786082-A-G 14674202-A-G **
16738083-C-A 14626203-C-A **
16720112-T-C 14608232-T-C **
16705024-G-A 14593144-G-A **
17714884-A-G 15603004-A-G **
17928310-G-T 15816430-G-T **
20840651-A-C 18678765-A-C P4_Gap **
18862303-A-G 16750423-A-G **
20659424-T-C 18497538-T-C P4_Prx **
20643242-A-ATTTT 18481356-A-ATTTT P4_Prx **
20643240-A-G 18481354-A-G P4_Prx **
20231570-A-AGAAAGAAAGAAC 18069684-A-AGAAAGAAAGAAC P5_Dst **
19842283-C-A 17730403-C-A P5_Prx **
19235652-C-A 17123772-C-A **
19031381-T-C 16919501-T-C **
19019905-G-T 16908025-G-T **
18987179-C-A 16875299-C-A **
18877469-G-A 16765589-G-A **
18753447-A-G 16641567-A-G **
18056045-T-C 15944165-T-C **
18753375-G-T 16641495-G-T **
18653343-A-G 16541463-A-G **
18624355-G-T 16512475-G-T **
18554404-C-A 16442524-C-A **
18425248-C-A 16313368-C-A P6_Gap **
18411285-C-A 16299405-C-A P6_Gap **
18289760-G-T 16177880-G-T P6_Prx **
18196446-G-T 16084566-G-T **
18194224-G-T 16082344-G-T **
18159185-C-A 16047305-C-A **
18159114-A-T 16047234-A-T **
10814229-T-C **
10821188-T-C **
10806408-G-T **
2939479-G-T 3071438-G-T **
3240872-G-T 3372831-G-T **
3219253-G-T 3351212-G-T **
3219172-C-A 3351131-C-A **
3213840-G-T 3345799-G-T **
3116122-T-G 3248081-T-G **
3089666-G-T 3221625-G-T **
3075028-C-A 3206987-C-A **
3045836-T-G 3177795-T-G **
3015882-A-G 3147841-A-G **
2969033-A-G 3100992-A-G **
2888865-CG-C 3020824-CG-C **
3287524-T-C 3419483-T-C **
2681009-C-A 2812968-C-A **
10776284-G-T **
6922581-C-A 7054540-C-A **
17831146-C-A 15719266-C-A **
10666906-T-A **
14052105-A-G 11931399-A-G **
14067856-C-A 11947150-C-A **
25995561-AAC-A 23849414-AAC-A P1_Y1 **
19091406-GTTT-G 16979526-GTTT-G 14×T**
23128597-C-A 20966711-C-A **
10864446-C-T **
3240910-G-T 3372869-G-T **
3341215-G-A 3473174-G-A **
19318159-C-A 17206279-C-A **
3804847-C-A 3936806-C-A **
4200569-C-A 4332528-C-A **
4177194-T-A 4309153-T-A **
4177145-C-A 4309104-C-A **
4177076-C-T 4309035-C-T **
10798643-G-T **
4144386-T-C 4276345-T-C **
4107592-T-G 4239551-T-G **
4082018-C-A 4213977-C-A **
4076285-C-T 4208244-C-T **
3995185-C-A 4127144-C-A **
3950013-A-T 4081972-A-T **
3759334-A-C 3891293-A-C **
3341281-A-T 3473240-A-T **
3680343-A-G 3812302-A-G **
3627345-G-T 3759304-G-T **
3605743-C-A 3737702-C-A **
3589832-G-T 3721791-G-T **
3581431-T-A 3713390-T-A **
3560282-A-G 3692241-A-G **
3559653-C-A 3691612-C-A **
3528406-A-T 3660365-A-T **
3490587-G-T 3622546-G-T **
3429414-C-A 3561373-C-A **
3346928-C-A 3478887-C-A **
11663382-C-A **
19529129-TTC-A 17417249-TTC-A **
4301814-C-A 4433773-C-A **
18906349-C-A 16794469-C-A **
17135658-C-A 15023778-C-A **
9440294-C-A 9602685-C-A **
8027811-A-C 8159770-A-C **
13883136-C-A 11762430-C-A **
24241286-A-AT 22095139-A-AT P3_b1 **
16971338-C-A 14859458-C-A **
13594309-C-A 11438633-C-A **
28793782-T-C 26647635-T-C **
10664821-A-T **
10664793-T-TACATC **
17085884-C-A 14974004-C-A **
7188494-C-A 7320453-C-A **
21922080-CAAAAAAAAAA-C 19760194-CAAAAAAAAAA-C 23×A**
16180996-C-A 14069116-C-A **
3123323-C-A 3255282-C-A **
17547719-C-A 15435839-C-A **
19416813-C-A 17304933-C-A **
15832216-C-CTT 13720336-C-CTT 22×T**
11654947-G-T **
21371526-G-A 19209640-G-A **
20659365-C-T 18497479-C-T BY22886 P4_Prx **
5119765-A-G 5251724-A-G Z15446 **
4973351-G-T 5105310-G-T **
10068596-T-G 10230987-T-G **
5937168-C-A 6069127-C-A **
22078217-C-A 19916331-C-A **
11031879-C-A **
10985211-T-G **
5410067-C-A 5542026-C-A **
21206953-C-A 19045067-C-A **
13859897-A-AT 11739191-A-AT **
13859894-G-T 11739188-G-T **
13859877-A-C 11739171-A-C **
21919486-A-T 19757600-A-T **
3286525-C-A 3418484-C-A **
16241601-C-A 14129721-C-A **
18630666-CTTTT-C 16518786-CTTTT-C 20×T**
15127852-C-A 13015939-C-A **
10985233-A-G **
10985181-C-T **
14187009-C-A 12066303-C-A **
9108528-C-A **
10925595-G-T **
21014350-A-AG 18852464-A-AG P4_Dst **
9117910-G-T **
13881342-C-A 11760636-C-A **
19071059-C-A 16959179-C-A **
7101012-A-G 7232971-A-G **
28719927-C-A 26573780-C-A **
16708468-G-T 14596588-G-T **
7829185-C-A 7961144-C-A **
11666541-C-T **
4231060-C-A 4363019-C-A **
4172432-C-A 4304391-C-A **
4381918-A-G 4513877-A-G **
7248276-C-A 7380235-C-A **
8153985-C-A 8285944-C-A **
8084201-C-G 8216160-C-G **
8079356-C-A 8211315-C-A **
8027807-A-G 8159766-A-G **
7969625-C-T 8101584-C-T **
7969508-T-G 8101467-T-G **
7630134-A-T 7762093-A-T **
7615233-G-A 7747192-G-A **
7416603-T-A 7548562-T-A **
7381621-A-G 7513580-A-G **
7360754-C-A 7492713-C-A **
7139161-C-A 7271120-C-A **
8660856-C-A 8792815-C-A **
7090920-C-A 7222879-C-A **
7044013-T-G 7175972-T-G **
7040047-G-C 7172006-G-C **
7020704-G-T 7152663-G-T **
6922749-A-C 7054708-A-C **
6665947-A-G 6797906-A-G **
4416758-C-A 4548717-C-A **
6583556-G-T 6715515-G-T **
6490690-T-A 6622649-T-A **
6475495-C-A 6607454-C-A **
6464763-T-C 6596722-T-C **
8289317-G-A 8421276-G-A **
8669450-C-T 8801409-C-T **
6430395-C-A 6562354-C-A **
10068526-A-G 10230917-A-G **
10767296-C-A **
10759823-T-C **
10759804-C-CCGTTA **
10753611-C-T **
10686863-C-A **
10682804-T-C **
10679430-C-A **
10663727-C-A **
10661994-C-A **
10653711-C-A **
10624350-C-A **
10015011-T-G 10177402-T-G **
8671332-C-A 8803291-C-A **
10011339-G-T 10173730-G-T **
10011119-G-T 10173510-G-T **
9940678-T-A 10103069-T-A **
9727609-G-T 9890000-G-T IR3_Prx **
9639001-C-G 9801392-C-G IR3_Prx **
9605324-T-TGA 9767715-T-TGA IR3_Prx **
9497770-G-C 9660161-G-C **
9116931-G-T 9279322-G-T **
8907871-T-C 9039830-T-C **
8735629-G-T 8867588-G-T **
8699437-C-A 8831396-C-A **
8690250-C-A 8822209-C-A **
6461656-A-T 6593615-A-T **
6600023-A-G 6731982-A-G **
6374236-G-A 6506195-G-A **
4871784-G-A 5003743-G-A **
5262482-A-AT 5394441-A-AT 8×T**
5247469-A-G 5379428-A-G **
5190432-G-T 5322391-G-T **
5127819-C-A 5259778-C-A **
6267714-A-AG 6399673-A-AG IR3_Dst **
5084723-TA-T 5216682-TA-T **
5063505-A-T 5195464-A-T **
5063498-A-C 5195457-A-C **
5063448-G-T 5195407-G-T **
4873987-T-C 5005946-T-C **
4872472-G-T 5004431-G-T **
4798647-G-T 4930606-G-T **
5314565-GGT-G 5446524-GGT-G **
4717646-G-T 4849605-G-T **
4674395-T-C 4806354-T-C **
4635086-C-A 4767045-C-A **
4577180-C-A 4709139-C-A **
4575948-G-T 4707907-G-T **
4545079-C-A 4677038-C-A **
4540807-G-A 4672766-G-A **
4540308-A-G 4672267-A-G **
4532361-C-A 4664320-C-A **
4508519-C-A 4640478-C-A **
4433136-C-A 4565095-C-A **
4433070-G-A 4565029-G-A **
5262857-T-A 5394816-T-A **
5107935-A-C 5239894-A-C **
32068-G-C **
5709934-A-G 5841893-A-G **
6102425-A-G 6234384-A-G **
5999305-G-T 6131264-G-T **
5870150-A-G 6002109-A-G **
5829187-C-T 5961146-C-T **
5784148-C-A 5916107-C-A **
5765387-G-GA 5897346-G-GA 11×A**
5358458-C-A 5490417-C-A **
5736269-C-A 5868228-C-A **
5728157-T-A 5860116-T-A **
5751233-G-T 5883192-G-T **
5688448-C-A 5820407-C-A **
5358839-C-T 5490798-C-T **
5358910-T-C 5490869-T-C **
5446399-T-G 5578358-T-G FT55573 **
5427815-T-C 5559774-T-C **
5446160-G-T 5578119-G-T **
13643189-C-A 11487513-C-A ***
56858241-A-T ***
10766820-C-A ***
17090604-C-A 14978724-C-A ***
17090631-C-A 14978751-C-A ***
21244223-C-A 19082337-C-A ***
17142045-C-A 15030165-C-A ***
28798809-C-A 26652662-C-A ***
14497374-TGG-T 12385579-TGG-T 11×G***
22551353-A-G 20389467-A-G ***
10781676-AATTCCATTCCATTCCATTCCATTCCATTCC-A ***
10916191-T-C ***
23522414-G-T 21360528-G-T 8×A***
6948123-T-G 7080082-T-G ***
10999858-C-CCAGAA ***
27535107-G-A 25388960-G-A P1_Y2 ***
2777828-TAAAA-T,TA 2909787-TAAAA-T,TA 15×A***
11004515-G-C ***
10958430-C-A ***
23126786-C-A 20964900-C-A ***
24666405-A-T 22520258-A-T P3_b2 ***
2948178-T-A 3080137-T-A ***
11031569-A-T ***
15653510-G-A 13541630-G-A ***
15859437-CTTT-C,CT 13747557-CTTT-C,CT 17×T***
16430379-C-A 14318499-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 507060992407280739007949527
Used in age calculations992407280739007949527
Counts of SNPs1918
Variant counts last updated 2019-06-16 23:28:03.



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