Jacobs

Kane38: B80560, BigY2: B80560
MDKA Birth: United States > South Dakota

Tree Position

R-P312/S116 > Z40481 > FGC84729 > ZZ37 > ZZ38 > L624/S389 > BY196132

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane38
B80560		BigY2
B80560
6252326-G-A 6384285-G-A IR3_Dst A*
7468298-C-A 7600257-C-A IR1_L A*
18353378-T-C 16241498-T-C P6_Prx A*
19834400-T-C 17722520-T-C P5_Prx A*
19948046-A-G 17836166-A-G P5_Prx A*
22268281-G-A 20106395-G-A DYZ19 A*
22289673-A-G 20127787-A-G DYZ19 A*
28817802-G-C 26671655-G-C A*
5671559-G-A 5803518-G-A Z4816 +
2874085-A-G 3006044-A-G Y140162 YY++
7821701-T-C 7953660-T-C Y140155 YY++
8480367-C-T 8612326-C-T Y140161 YY++
8748084-C-A 8880043-C-A Y140154 YY++
9087291-T-C 9249682-T-C FT130567 Y+**
9469504-C-G 9631895-C-G FT130608 +**
9489512-A-G 9651903-A-G BY79851 ++
14078062-C-A 11957356-C-A FT130740 YY+**
14368519-T-G 12247815-T-G Y140159 YY++
14844388-C-T 12732454-C-T FT130883 YY+**
15222165-T-G 13110251-T-G Y140160 Y+**
16868813-C-A 14756933-C-A FT131202 YY+**
17198145-C-T 15086265-C-T Y140151 YY++
17755716-C-T 15643836-C-T Y140158 YY++
18594013-T-C 16482133-T-C Y140163 YY++
19213431-A-C 17101551-A-C FT131620 YY+**
19280471-A-T 17168591-A-T BY127919 YY++
20821445-G-A 18659559-G-A BY212627 P4_Gap ++
21233754-C-T 19071868-C-T Y140156 YY++
21463325-C-A 19301439-C-A Y140153 YY++
21546569-T-A 19384683-T-A Y140157 YY++
22118397-T-G 19956511-T-G Y140152 YY++
22479509-G-C 20317623-G-C FT460256 DYZ19 **+
24007914-T-G 21861767-T-G BY149273 Y++
13487297-C-A 11331621-C-A +
21489073-C-T 19327187-C-T YY+
5110314-T-G 5242273-T-G FGC658 +
3252536-T-C 3384495-T-C FT129598 +
3795870-C-T 3927829-C-T FT129698 +
3996597-AG-A 4128556-AG-A +
4824030-T-C 4955989-T-C FT129916 +
4892860-G-A 5024819-G-A FT129926 +
4969373-A-G 5101332-A-G FT129942 +
5407833-A-G 5539792-A-G FT130016 +
5824843-T-A 5956802-T-A FT130099 +
6346094-A-AGTCTT 6478053-A-AGTCTT +
6476414-G-A 6608373-G-A FT130191 +
7490628-C-T 7622587-C-T IR1_L +
9618045-C-T 9780436-C-T IR3_Prx +
10812253-CTCCATTCCAT-C +
10878024-GA-G +
10969985-A-ACTTCACTCCACTCCACTCCATTCCACTCCACTGCACACCACTCCACTCCATTCCAATCC +
11016426-C-A FT191044 +
13575261-G-A 11419585-G-A +
13629920-G-GTCC 11474244-G-GTCC +
14372225-G-T 12251521-G-T FT130813 YY+
15179881-G-A 13067967-G-A FT130936 Y+
16341228-G-A 14229348-G-A FT131108 YY+
19754981-C-T 17643101-C-T FT452372 P5_Prx +
21351637-C-A 19189751-C-A Y+
22267778-G-C 20105892-G-C DYZ19 +
24879929-G-T 22733782-G-T g1 +
27952096-TATATATATATATATATATATATATATATATATACACACACAC-T 25805949-TATATATATATATATATATATATATATATATATACACACACAC-T P1_Y2 +
22319454-G-T 20157568-G-T DYZ19 **
13486587-A-C 11330911-A-C *
59018144-C-T 56871997-C-T *
59032513-T-G 56886366-T-G *
58972817-GTCCA-G 56826670-GTCCA-G *
8874970-CT-C,CTT 9006929-CT-C,CTT 17×T*
15593274-CA-C,CAA 13481394-CA-C,CAA 23×A*
13687466-C-T 11531790-C-T *
22432503-G-A 20270617-G-A DYZ19 **
15967503-CTT-C,CT 13855623-CTT-C,CT 14×T*
13483369-C-T 11327693-C-T *
22509217-G-T 20347331-G-T DYZ19 *
18340489-TACAC-T,TAC 16228609-TACAC-T,TAC P6_Prx 12×AC*
22509183-G-T 20347297-G-T DYZ19 *
13486565-G-T 11330889-G-T *
3699182-C-A 3831141-C-A *
15592550-CAAA-C,CAA 13480670-CAAA-C,CAA 22×A*
17678621-CTTTTT-C,CTTTT 15566741-CTTTTT-C,CTTTT 26×T*
28807380-G-A 26661233-G-A *
13486574-C-T 11330898-C-T *
13486578-C-G 11330902-C-G *
13474348-T-C 11318672-T-C *
28813960-G-T 26667813-G-T *
13486561-A-T 11330885-A-T *
13609583-G-T 11453907-G-T FT446450 *
27461936-TTGTG-T,TTG 25315789-TTGTG-T,TTG P1_Y2 27×TG*
21112410-TACAC-T,TAC 18950524-TACAC-T,TAC 17×AC*
13468169-T-C 11312493-T-C *
16336897-GTTTT-G,GTTT 14225017-GTTTT-G,GTTT 23×T*
19059747-CTTTT-C,CTTT 16947867-CTTTT-C,CTTT 25×T*
13693685-CCTAG-C 11538009-CCTAG-C *
13693693-GGAATGA-G 11538017-GGAATGA-G *
6402075-G-GTATATCTTATATTCAC 6534034-G-GTATATCTTATATTCAC *
13470913-C-CCGCCGT 11315237-C-CCGCCGT *
13481463-A-AGAAG,G 11325787-A-AGAAG,G *
13609586-A-C 11453910-A-C FT446451 *
6694444-CTTTTTT-C,CTTTTT 6826403-CTTTTTT-C,CTTTTT 20×T*
10673052-A-ACAATC *
13712916-ATGGAATGGACTCAAATGTGATGGAC-A 11557240-ATGGAATGGACTCAAATGTGATGGAC-A *
13712943-C-G 11557267-C-G *
56832357-C-CCACTCCTTTCCATTCCACTCCTTTCCACTCCACTCCCCTCCAA *
10673069-A-ACTCCTTCCACTCCATT *
10673070-TGA-T *
13489765-TAC-T 11334089-TAC-T *
13489768-C-CGT 11334092-C-CGT *
7567753-CT-C,CTT 7699712-CT-C,CTT 25×T*
22474707-TTCCAGAGTTTGTTACTTCAGATATGTCCAGAGTTTCTTCCTTCTGGCAGGTTCATGGTCTTGCTCACTTCAAGAACGAAGCTGCAGACCTTTGCGGTGAGTGATACAACACCGAAAGGTGTTATA-T 20312821-TTCCAGAGTTTGTTACTTCAGATATGTCCAGAGTTTCTTCCTTCTGGCAGGTTCATGGTCTTGCTCACTTCAAGAACGAAGCTGCAGACCTTTGCGGTGAGTGATACAACACCGAAAGGTGTTATA-T DYZ19 *
3712813-T-TGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA 3844772-T-TGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA *
5289090-T-TAC,TACAC 5421049-T-TAC,TACAC 19×AC*
5777772-G-C 5909731-G-C FT130086 *
8377909-TACACAC-T,T 8509868-TACACAC-T,T 16×AC*
8725857-TAC-T,T 8857816-TAC-T,T 9×AC*
9203940-C-T 9366331-C-T Y*
10677051-T-TA *
10678188-ATTC-A *
10679708-T-TCAGAAGATCTCACTCTGTCACTCAGGTTGGAGTGCAGTCGCATAATCTCAGCTCACATTACATTTCAGGATTGTGTTCCA *
11021454-CTCCAT-C *
11021469-CCCCACTCCATTCAATTCCATTCCACTCCACTCCTCCCTACTCCAT-C *
11023156-CCATTCCACTCCTCT-C *
11023173-C-G *
13243329-AC-A 11087653-AC-A *
13261352-G-A 11105676-G-A *
13279998-CAAA-C,CAA 11124322-CAAA-C,CAA 26×A*
13445466-A-AGG 11289790-A-AGG *
13476505-T-A,G 11320829-T-A,G *
13489687-A-T 11334011-A-T *
13489696-C-CAG 11334020-C-CAG *
13489698-TGC-GGC,T 11334022-TGC-GGC,T *
13701923-A-G,G 11546247-A-G,G *
13944051-CAAA-C,CAA 11823345-CAAA-C,CAA 22×A*
12403515-AAGATAGAT-A,AAGATAGATAGAT 12×AGAT*
16340147-G-GAA,GAAA 14228267-G-GAA,GAAA 22×A*
19438446-GAAGA-G,GAAGAAAGA 17326566-GAAGA-G,GAAGAAAGA 15×AAGA*
22319293-C-CAA,CAA 20157407-C-CAA,CAA DYZ19 *
22326847-T-A 20164961-T-A DYZ19 *
22339916-C-G 20178030-C-G DYZ19 *
22426527-T-A 20264641-T-A DYZ19 *
22509191-A-T 20347305-A-T DYZ19 *
27714210-T-TA 25568063-T-TA P1_Y2 *
28237969-T-C 26091822-T-C P1_b4 **
14226714-C-T 12106008-C-T BY2606Z1823 CTS2230 AMM042 **
8386255-C-T 8518214-C-T YSC0000282 L750 Z2725 **
14232461-TTTTC-T 12111755-TTTTC-T **
24895718-G-T 22749571-G-T g1 **
4215823-G-T 4347782-G-T **
9979009-C-A 10141400-C-A **
7608540-TAAAA-T 7740499-TAAAA-T 17×A**
21412346-C-A 19250460-C-A **
10896056-C-A **
10672855-C-A **
21658704-C-A 19496818-C-A **
10899037-T-A **
23317743-A-T 21155857-A-T **
13981734-C-A 11861028-C-A **
5625913-C-A 5757872-C-A **
13880841-C-A 11760135-C-A **
10936243-A-T **
10936247-C-CATTCA **
23837149-G-T 21675263-G-T **
11025441-C-A **
18824563-A-G 16712683-A-G **
13315661-C-A 11159985-C-A **
10795062-C-A **
21603950-C-A 19442064-C-A **
24430184-T-A 22284037-T-A **
5514350-G-T 5646309-G-T **
14295696-C-A 12174990-C-A **
10929117-C-G **
14452608-G-T 12331881-G-T **
11012287-C-CCTGTG **
17515584-TAAAAA-T 15403704-TAAAAA-T 17×A**
14017621-C-A 11896915-C-A **
11028252-CTCCAT-C **
7647516-C-A 7779475-C-A **
3853998-C-A 3985957-C-A **
17046702-C-A 14934822-C-A **
27791905-T-C 25645758-T-C A13000 P1_Y2 **
10796111-C-G **
14557776-C-A 12445977-C-A **
15113827-C-A 13001914-C-A **
10924363-A-T **
5851546-C-A 5983505-C-A **
3657840-G-T 3789799-G-T **
20330311-G-T 18168425-G-T P5_Dst **
3046079-C-A 3178038-C-A **
22538710-C-A 20376824-C-A **
20661831-A-T 18499945-A-T P4_Prx **
14867157-C-A 12755227-C-A **
16277685-C-A 14165805-C-A **
7669132-C-A 7801091-C-A **
8238218-G-T 8370177-G-T **
10801975-C-T **
21450670-G-T 19288784-G-T **
8218250-C-A 8350209-C-A **
14022878-C-A 11902172-C-A **
14574176-C-A 12462376-C-A **
13234372-C-A 11078696-C-A **
23609143-C-A 21447257-C-A **
10892490-C-G **
14038283-C-T 11917577-C-T **
14038285-C-T 11917579-C-T **
26282895-A-T 24136748-A-T P1_Y1 **
6268625-G-T 6400584-G-T IR3_Dst **
2717099-C-A 2849058-C-A **
2755468-G-C 2887427-G-C **
2778470-G-T 2910429-G-T **
2778477-T-G 2910436-T-G **
2805493-C-A 2937452-C-A **
2843709-TA-T 2975668-TA-T 9×A**
3052342-C-A 3184301-C-A **
4002920-C-A 4134879-C-A **
4093899-G-C 4225858-G-C **
4123832-A-T 4255791-A-T FGC24981 **
4458100-C-A 4590059-C-A **
4470160-C-A 4602119-C-A **
4673394-T-G 4805353-T-G **
4724316-C-A 4856275-C-A **
4900930-G-T 5032889-G-T **
4900979-G-T 5032938-G-T **
4950995-C-A 5082954-C-A **
5097731-G-T 5229690-G-T FT322720 **
5377965-G-T 5509924-G-T **
5459650-A-T 5591609-A-T **
5576884-G-A 5708843-G-A **
5621142-C-A 5753101-C-A **
6064040-C-A 6195999-C-A **
6293450-G-T 6425409-G-T IR3_Dst **
6513544-T-A 6645503-T-A **
6689735-C-A 6821694-C-A **
6792626-C-A 6924585-C-A **
6800975-C-A 6932934-C-A **
6873229-C-A 7005188-C-A **
7102670-T-A 7234629-T-A **
7103347-C-A 7235306-C-A **
7224923-G-T 7356882-G-T **
7302380-C-A 7434339-C-A **
7303930-T-A 7435889-T-A **
7325737-A-G 7457696-A-G **
7464567-G-T 7596526-G-T IR1_L **
7531884-C-A 7663843-C-A **
7580673-G-C 7712632-G-C **
7583118-T-A 7715077-T-A **
7664102-C-T 7796061-C-T **
7665434-A-T 7797393-A-T **
7825655-C-A 7957614-C-A **
7983265-G-A 8115224-G-A **
7983280-T-A 8115239-T-A **
7996186-G-T 8128145-G-T **
8078054-G-T 8210013-G-T **
8105045-C-A 8237004-C-A **
8105673-C-T 8237632-C-T **
8131560-C-A 8263519-C-A **
8160874-T-C 8292833-T-C **
8168391-A-T 8300350-A-T **
8264386-C-A 8396345-C-A **
8280884-A-G 8412843-A-G **
8326002-G-T 8457961-G-T **
8536080-C-A 8668039-C-A **
8550800-C-A 8682759-C-A **
8635438-C-A 8767397-C-A **
8661680-A-T 8793639-A-T **
8661733-T-A 8793692-T-A **
8824996-C-G 8956955-C-G **
8824999-G-T 8956958-G-T **
8825010-C-T 8956969-C-T **
8842238-C-A 8974197-C-A **
8855205-C-A 8987164-C-A **
9056932-T-A **
9056943-A-G **
9023771-C-A 9186162-C-A **
9026084-G-T 9188475-G-T **
9044153-A-G 9206544-A-G **
9058645-C-A 9221036-C-A **
9068932-T-G 9231323-T-G **
9319209-T-G 9481600-T-G **
9453185-C-A 9615576-C-A **
9622397-G-T 9784788-G-T IR3_Prx **
9735427-AT-A 9897818-AT-A IR3_Prx **
9735449-G-A 9897840-G-A IR3_Prx **
9735451-T-A 9897842-T-A IR3_Prx **
9735454-G-A 9897845-G-A IR3_Prx **
9735455-C-T 9897846-C-T IR3_Prx **
9885397-G-T 10047788-G-T **
9969059-G-T 10131450-G-T **
9974510-G-T 10136901-G-T **
10040103-G-T 10202494-G-T FT376785 **
10662446-C-A **
10666906-T-A **
10667039-C-A **
10691328-G-T **
10744512-TCCATTC-T **
10763102-A-C **
10778002-A-G **
10791899-C-A **
10792297-CA-C **
10794046-C-A **
10804949-C-A **
10846126-C-G **
10868163-G-T **
10868405-ACTC-A **
10873586-T-G **
10878878-C-A **
10899073-T-A **
10909674-T-C **
10909710-C-A **
10924419-C-CACCAT **
10937394-C-A **
10949537-C-T **
10949553-AACTCC-A **
10983825-C-A **
10995848-C-T **
11006577-A-T **
11013436-C-A **
11013447-C-A **
11013466-C-G **
11013480-T-A **
11013537-C-G **
11018487-C-A **
11024921-T-G **
13194238-A-G 11038562-A-G **
13226566-G-A 11070890-G-A **
13454731-C-A 11299055-C-A **
13463901-G-A 11308225-G-A **
13482366-A-T 11326690-A-T **
13482369-C-A 11326693-C-A **
13597496-T-G 11441820-T-G **
13644539-C-A 11488863-C-A **
11642983-C-T **
11653901-G-C **
13858284-G-T 11737578-G-T **
13858616-A-T 11737910-A-T **
13866890-G-T 11746184-G-T **
13866893-T-A 11746187-T-A **
13894128-C-A 11773422-C-A **
13937869-A-G 11817163-A-G **
13967310-G-T 11846604-G-T **
14018171-C-A 11897465-C-A **
14046542-C-T 11925836-C-T **
14272506-A-T 12151800-A-T **
14324915-T-A 12204209-T-A **
14324923-G-T 12204217-G-T **
14327996-T-C 12207290-T-C **
14329474-C-A 12208768-C-A **
14329574-C-A 12208868-C-A **
14332457-C-A 12211751-C-A **
14345214-C-A 12224509-C-A **
14349201-C-T 12228496-C-T **
14364731-A-T 12244026-A-T **
14376994-C-A 12256290-C-A **
14388528-C-A 12267824-C-A **
14426009-C-A 12305284-C-A **
14498988-G-T 12387193-G-T **
14507604-C-A 12395809-C-A **
14526011-C-T 12414212-C-T **
14551979-A-C 12440180-A-C **
14551982-C-A 12440183-C-A **
14552504-C-G 12440705-C-G **
14630269-C-A 12518338-C-A **
14632960-C-T 12521029-C-T **
14774256-T-TG 12662325-T-TG **
14844982-A-C 12733048-A-C **
14859972-C-A 12748038-C-A **
15023026-C-T 12911114-C-T BY99180 **
15038427-C-A 12926517-C-A **
15092712-G-A 12980801-G-A **
15267345-T-A 13155434-T-A **
15296585-C-A 13184684-C-A **
15330706-C-A 13218824-C-A **
15433425-C-A 13321545-C-A **
15472051-G-T 13360171-G-T **
15493195-C-A 13381315-C-A **
15515251-G-T 13403371-G-T **
15541646-C-A 13429766-C-A **
15623635-C-A 13511755-C-A **
15658226-T-G 13546346-T-G **
15669724-C-A 13557844-C-A **
15725775-C-A 13613895-C-A **
15730457-T-C 13618577-T-C **
15793478-A-T 13681598-A-T **
15793509-G-T 13681629-G-T **
15816229-C-A 13704349-C-A **
15845018-C-A 13733138-C-A **
15864093-C-A 13752213-C-A **
15988267-C-A 13876387-C-A **
15998215-G-C 13886335-G-C **
16029749-A-C 13917869-A-C **
16036133-T-A 13924253-T-A **
16040647-C-A 13928767-C-A **
16051612-G-T 13939732-G-T **
16100070-G-T 13988190-G-T P8_Prx **
16100079-C-A 13988199-C-A P8_Prx **
16105802-A-T 13993922-A-T P8_Prx **
16105803-G-T 13993923-G-T P8_Prx **
16211231-G-C 14099351-G-C **
16211261-T-A 14099381-T-A **
16261139-G-C 14149259-G-C **
16277679-C-G 14165799-C-G **
16293630-C-T 14181750-C-T **
16344516-TTTC-T 14232636-TTTC-T 5×TTC**
16345069-C-A 14233189-C-A **
16404292-C-A 14292412-C-A **
16466659-G-T 14354779-G-T **
16524535-A-C 14412655-A-C **
16535972-C-A 14424092-C-A **
16535983-C-A 14424103-C-A **
16602533-C-A 14490653-C-A **
16623650-A-C 14511770-A-C **
16690061-A-T 14578181-A-T **
16729434-T-C 14617554-T-C **
16729446-C-G 14617566-C-G **
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56846860-G-T ***
10964609-C-T ***
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13474726-T-C 11319050-T-C ***
13474730-T-C 11319054-T-C ***
13474545-C-A 11318869-C-A ***
2785959-T-C 2917918-T-C ***
8705715-G-T 8837674-G-T ***
28691447-CAAA-C 26545300-CAAA-C 16×A***
13474221-C-G 11318545-C-G ***
10964925-A-G FT438463 ***
13704921-G-A 11549245-G-A ***
13466463-A-C 11310787-A-C ***
13466470-C-A 11310794-C-A ***
23041234-C-A 20879348-C-A ***
14747961-CT-C,CTT 12636030-CT-C,CTT 22×T***
9942043-ATTTT-A 10104434-ATTTT-A 28×T***
11014612-A-T ***
13480291-C-A 11324615-C-A ***
13466415-T-C 11310739-T-C ***
56756824-T-C ***
13484841-T-C 11329165-T-C ***
13484850-G-GC 11329174-G-GC ***
13484853-GC-G 11329177-GC-G ***
13484868-A-T 11329192-A-T ***
13484873-C-A 11329197-C-A ***
5966890-G-GTT 6098849-G-GTT 14×T***
5157397-A-G 5289356-A-G ***
4076728-GTATA-G 4208687-GTATA-G 10×TA***
25250651-GTGTC-G 23104504-GTGTC-G P2_r1 5×TGTC***
13474208-C-A 11318532-C-A ***
16561096-C-CA 14449216-C-CA 8×A***
13485602-A-T 11329926-A-T ***
27527437-C-A 25381290-C-A P1_Y2 ***
15947951-CTT-C,CTTT 13836071-CTT-C,CTTT 19×T***
13438321-G-T 11282645-G-T ***
8546599-TTTTTTG-T 8678558-TTTTTTG-T 4×TTTTTG***
13478422-C-T 11322746-C-T FGC77978 ***
22484389-C-G 20322503-C-G DYZ19 ***
13486555-G-T 11330879-G-T ***
13465124-G-A 11309448-G-A ***
13489818-G-A 11334142-G-A ***
13236439-TACACAC-T 11080763-TACACAC-T 11×AC***
5325772-C-T 5457731-C-T ***
13483162-C-A 11327486-C-A ***
20128468-TAAA-T 18016588-TAAA-T P5_Dst 20×A***
13474543-T-G 11318867-T-G ***
22713415-G-T 20551529-G-T ***
7015324-CT-C,CTT 7147283-CT-C,CTT 23×T***
17006261-C-CTT 14894381-C-CTT 17×T***
13475843-C-T 11320167-C-T ***
13475846-C-T 11320170-C-T ***
7155780-TAA-T 7287739-TAA-T 14×A***
13465127-G-A 11309451-G-A ***
13482982-C-A 11327306-C-A ***
13532726-C-T 11377050-C-T ***
13558124-C-T 11402448-C-T ***
13558127-T-A 11402451-T-A ***
10029240-C-T 10191631-C-T ***
10029308-A-C 10191699-A-C ***
13264116-C-G 11108440-C-G ***
13264132-T-C 11108456-T-C ***
13478977-C-A 11323301-C-A ***
13478999-G-T 11323323-G-T ***
56835830-T-C ***
13479102-T-G 11323426-T-G ***
22512439-GCA-G 20350553-GCA-G DYZ19 ***
4055283-T-A 4187242-T-A ***
13480340-G-C 11324664-G-C ***
13480385-A-G 11324709-A-G ***
13476532-CA-C 11320856-CA-C ***
13476550-CG-C 11320874-CG-C ***
13688006-C-T 11532330-C-T ***
23388263-A-G 21226377-A-G FTB1468 ***
3205858-C-CAA 3337817-C-CAA 15×A***
13480304-A-T 11324628-A-T ***
5350037-CTTTTTT-C 5481996-CTTTTTT-C 21×T***
25990634-GTT-G,GT 23844487-GTT-G,GT P1_Y1 23×T***
10044204-C-G 10206595-C-G ***
13476726-C-T 11321050-C-T ***
22511484-C-T 20349598-C-T DYZ19 ***
16598984-CAA-C,CA 14487104-CAA-C,CA 25×A***
13476528-C-G 11320852-C-G ***
13466127-C-T 11310451-C-T FGC58148 ***
5059192-C-G 5191151-C-G ***
28528985-T-C 26382838-T-C ***
3744243-C-CTT 3876202-C-CTT 11×T***
22507911-G-T 20346025-G-T DYZ19 ***
10043562-G-A 10205953-G-A ***
13416513-G-C 11260837-G-C ***
13251368-A-T 11095692-A-T ***
13482994-G-T 11327318-G-T ***
21979689-C-G 19817803-C-G ***
13728938-A-G 11573262-A-G ***
22512435-T-TAC 20350549-T-TAC DYZ19 ***
17250038-T-G 15138158-T-G ***
5784602-A-AAT 5916561-A-AAT 9×AT***
13487260-G-A 11331584-G-A ***
13466097-G-C 11310421-G-C ***
13476529-TC-T 11320853-TC-T ***
17130400-CT-C,CTT 15018520-CT-C,CTT 21×T***
13545823-TAAA-T 11390147-TAAA-T 12×A***
17093304-GTATA-G 14981424-GTATA-G ***
15257262-C-CAA 13145346-C-CAA 14×A***
16913422-CAA-C,CA 14801542-CAA-C,CA 21×A***
5062473-CA-C,CAA 5194432-CA-C,CAA 21×A***
6967329-A-AT 7099288-A-AT 9×T***
4005057-G-GTT 4137016-G-GTT 13×T***
13332218-G-C 11176542-G-C ***
6091720-ATT-A,AT 6223679-ATT-A,AT 28×T***
13478988-C-A 11323312-C-A ***
21838971-G-GAAA 19677085-G-GAAA 20×A***
28587205-T-A 26441058-T-A ***
10043548-A-G 10205939-A-G ***
13486543-T-A 11330867-T-A ***
13484203-A-T 11328527-A-T ***
22509607-T-G 20347721-T-G DYZ19 ***
13473858-A-AGT 11318182-A-AGT ***
13473859-ATGC-A 11318183-ATGC-A ***
13241802-T-A 11086126-T-A ***
13466106-G-T 11310430-G-T ***
13482178-G-C 11326502-G-C ***
2729648-CTT-C,CT 2861607-CTT-C,CT 25×T***
13486023-C-A 11330347-C-A ***
15507783-GTT-G,GTTT 13395903-GTT-G,GTTT 25×T***
13476601-G-T 11320925-G-T ***
13468058-T-A 11312382-T-A ***
22505730-G-A 20343844-G-A DYZ19 ***
13462079-T-A 11306403-T-A ***
13712951-ATC-A 11557275-ATC-A ***
56756879-GAA-G ***
13734128-AATGGAACGGAATTGAATGTC-A 11578452-AATGGAACGGAATTGAATGTC-A ***
6633960-CT-C 6765919-CT-C 10×T***
13470158-AGGG-A 11314482-AGGG-A ***
13482145-A-T 11326469-A-T ***
9211268-AC-A 9373659-AC-A ***
9211270-ACACAC-A 9373661-ACACAC-A ***
13468515-G-A 11312839-G-A ***
13468543-G-T 11312867-G-T ***
13468550-A-T 11312874-A-T ***
13465096-A-C 11309420-A-C BY85718 ***
21979679-A-G 19817793-A-G ***
56770748-G-T ***
13482191-G-A 11326515-G-A ***
56834798-T-TCCATTCCATTCCATTCCACG ***
2856782-CTTTTT-C,CTTTT 2988741-CTTTTT-C,CTTTT 24×T***
3063726-TAA-T 3195685-TAA-T 13×A***
3650789-G-C 3782748-G-C ***
3930971-T-C 4062930-T-C ***
3963833-CAAA-C,CAAAA 4095792-CAAA-C,CAAAA 22×A***
4287507-TG-T 4419466-TG-T ***
4735321-C-A 4867280-C-A ***
5264020-T-A 5395979-T-A ***
5426266-T-C 5558225-T-C ***
5534995-T-C 5666954-T-C ***
5960696-AT-A,ATTTT 6092655-AT-A,ATTTT 30×T***
6012841-T-C 6144800-T-C ***
6024636-A-G 6156595-A-G ***
6089764-GTTT-G,GT 6221723-GTTT-G,GT 31×T***
6250518-TCACA-T 6382477-TCACA-T IR3_Dst 8×CA***
6374560-A-G 6506519-A-G ***
6686353-A-G 6818312-A-G ***
6934428-A-T 7066387-A-T ***
7100954-C-CTTTT 7232913-C-CTTTT 32×T***
7165310-T-TC 7297269-T-TC ***
7204008-A-G 7335967-A-G ***
7383893-G-T 7515852-G-T ***
7740396-CT- ***
7972604-TCCAAC-T 8104563-TCCAAC-T ***
7972609-C-CGTTGG 8104568-C-CGTTGG ***
8094362-C-CTGTATAG 8226321-C-CTGTATAG ***
8094373-C-G 8226332-C-G ***
8153986-A-G 8285945-A-G ***
8576986-T- ***
9360641-G- ***
9410850-A-G 9573241-A-G ***
9847327-G-T 10009718-G-T ***
10094477-TTTAAAAA- ***
9965070-C-G 10127461-C-G ***
10044208-G-C 10206599-G-C ***
10818736-T- ***
10997613-AT-A ***
11021531-TCATTCTATTACATTACATTACATTCCACTCTACTCCACTCCACTCTACTCCATTCAACTCCATTCCAGTCCACTCCACTCCACTCGACTCCACTGCACTCTACTCCACTCCACTCCATTCCATTCCA-T ***
11021562-T- ***
11021564-C- ***
11021572-CACTCTACTCCATTCAACTCCATTCCAGTCCACTCCACTCCACTCGACTCCACTGCACTCT- ***
11024625-C-CT ***
11024626-A-AGACT ***
13267613-A-AAG 11111937-A-AAG ***
13423799-G-GAGA 11268123-G-GAGA ***
13423803-ATCT-A 11268127-ATCT-A ***
11294428-CTCCACTCCACCCCATCCCATCCCATTCTATTCCATTCCATTCCAT- ***
13453510-ACTCGG-A 11297834-ACTCGG-A ***
13461382-G-A 11305706-G-A ***
13462256-C-CCCCCTCA 11306580-C-CCCCCTCA ***
13463292-C-T 11307616-C-T ***
13463301-G-T 11307625-G-T ***
13463323-C-CA 11307647-C-CA ***
13463325-G-GT 11307649-G-GT ***
13463326-C-CT 11307650-C-CT ***
13465007-G-A 11309331-G-A ***
13465065-T-C 11309389-T-C ***
13465101-C-T 11309425-C-T ***
13466459-C-T 11310783-C-T ***
13466462-A-T 11310786-A-T ***
13466481-G-C 11310805-G-C ***
13466493-G-A 11310817-G-A ***
13467982-G-A 11312306-G-A ***
13468059-TGG-T 11312383-TGG-T ***
13469083-A-G 11313407-A-G ***
13469865-T-A 11314189-T-A ***
13469948-C-G 11314272-C-G ***
11314433-CAA- ***
11314434-A- ***
13470143-C-T 11314467-C-T ***
13470146-C-G 11314470-C-G ***
13470147-C-A 11314471-C-A ***
13470578-C-T 11314902-C-T ***
13472201-A-AAAACC 11316525-A-AAAACC ***
13476525-T-TTG 11320849-T-TTG ***
13476554-CA-C 11320878-CA-C ***
13476642-CTGGTCTCCTACG-C 11320966-CTGGTCTCCTACG-C ***
11321002-C- ***
13481014-G-A 11325338-G-A ***
13482109-A-C 11326433-A-C ***
13482157-G-T 11326481-G-T ***
13482168-T-C 11326492-T-C ***
13482199-A-G 11326523-A-G ***
13483061-A-G 11327385-A-G ***
13483069-TGTGCAGAGCTAAGTTAAAACGCCC-T 11327393-TGTGCAGAGCTAAGTTAAAACGCCC-T ***
13483097-TAGGCAGGGCCTAGATAAATGTTACATCACCTGGCTGATCAGAGC-T 11327421-TAGGCAGGGCCTAGATAAATGTTACATCACCTGGCTGATCAGAGC-T ***
13483146-A-T 11327470-A-T ***
13484201-A-G 11328525-A-G ***
13484418-A-T 11328742-A-T ***
13484910-G-A 11329234-G-A ***
13485444-A-G 11329768-A-G ***
13486021-C-T 11330345-C-T ***
13486030-C-T 11330354-C-T ***
13486031-C-G 11330355-C-G ***
13487955-GGC-G 11332279-GGC-G ***
13488510-A-G 11332834-A-G ***
11334024-C- ***
13578034-CAAAAAA-C 11422358-CAAAAAA-C 14×A***
13628145-G-C 11472469-G-C ***
13636850-T-TAA 11481174-T-TAA 10×A***
13692913-T-A 11537237-T-A ***
11538031-TGGAATGGAATGGAAC- ***
13730717-T-A 11575041-T-A ***
13730728-G-A 11575052-G-A ***
13740122-G-A 11584446-G-A ***
13884504-T-C 11763798-T-C ***
13924970-CAAAA-C,CAAA 11804264-CAAAA-C,CAAA 20×A***
14222714-A-T 12102008-A-T ***
14490545-A-G 12369814-A-G ***
12372686-A-G ***
14695500-TCAAA-T 12583566-TCAAA-T ***
15127666-T-G 13015753-T-G ***
15127668-C-G 13015755-C-G ***
15127669-C-G 13015756-C-G ***
15127671-C-A 13015758-C-A ***
13059313-T- ***
15468100-A-G 13356220-A-G ***
15803224-A-C 13691344-A-C ***
15834638-A-G 13722758-A-G ***
16516204-G-A 14404324-G-A 12×A***
16914459-A-G 14802579-A-G ***
17189355-G-GAAA 15077475-G-GAAA 19×A***
17301238-CAAA-C,CAAAAA 15189358-CAAA-C,CAAAAA 23×A***
17301275-A-G 15189395-A-G ***
17608338-G-A 15496458-G-A ***
17641957-C-CTT,CTT 15530077-C-CTT,CTT 25×T***
17859898-T-C 15748018-T-C ***
18434943-CAAA-C 16323063-CAAA-C P6_Dst ***
18711315-T-G 16599435-T-G ***
19325235-A-G 17213355-A-G ***
19340335-GC-G 17228455-GC-G ***
19355873-A-G 17243993-A-G ***
19437388-AAGGG-A 17325508-AAGGG-A ***
19438002-G-T 17326122-G-T ***
19438007-G-A 17326127-G-A ***
20104256-G-GGAGA 17992376-G-GGAGA P5_Dst 22×GA***
20425803-CA-C,CAA 18263917-CA-C,CAA P5_Dst 15×A***
22241294-ACAAACTCTGGACATAACACCTTTAAATGCTGTAAAACTCACCGTAAAGGACTGCAGCTTCATTCTTAAAGTCAGCAAGACCATGAACCTGCCCGAAGGAAGAAACTCTGAATATAACTGAAGGAC-A 20079408-ACAAACTCTGGACATAACACCTTTAAATGCTGTAAAACTCACCGTAAAGGACTGCAGCTTCATTCTTAAAGTCAGCAAGACCATGAACCTGCCCGAAGGAAGAAACTCTGAATATAACTGAAGGAC-A DYZ19 ***
22269944-A-T 20108058-A-T DYZ19 ***
22269953-G-T 20108067-G-T DYZ19 ***
22269956-C-G 20108070-C-G DYZ19 ***
22269964-G-T 20108078-G-T BY214898 DYZ19 ***
22298027-TG-T 20136141-TG-T DYZ19 ***
22298029-G-C 20136143-G-C DYZ19 ***
22441637-TA-T 20279751-TA-T DYZ19 ***
22441643-T-A 20279757-T-A DYZ19 ***
22441644-G-T 20279758-G-T DYZ19 ***
22465952-A-C 20304066-A-C DYZ19 ***
22473062-TGTTACAGCTCTTAAAGCTGTTATGTACAGAGTTTTTCCTTCAGATGTCTCCAGAGTTTCTTCCTTCTGGCAGGTTCGTGGTCTTGCTCACTTCAAGAATGAAGCTGCAGACCTTACCGGTGAGG-T 20311176-TGTTACAGCTCTTAAAGCTGTTATGTACAGAGTTTTTCCTTCAGATGTCTCCAGAGTTTCTTCCTTCTGGCAGGTTCGTGGTCTTGCTCACTTCAAGAATGAAGCTGCAGACCTTACCGGTGAGG-T DYZ19 ***
22475652-CAAGAATGATGCTGCAGACCTTAGTGGTGAGTGTTACAGCACTAAAAGGTGTTATGTCCAGAGTTTGTTCCTGCAGAAATATCCAGAGTTTCTTCCTTCTGGCAGGTTTATGGTCTTGCTCAATTT-C 20313766-CAAGAATGATGCTGCAGACCTTAGTGGTGAGTGTTACAGCACTAAAAGGTGTTATGTCCAGAGTTTGTTCCTGCAGAAATATCCAGAGTTTCTTCCTTCTGGCAGGTTTATGGTCTTGCTCAATTT-C DYZ19 ***
22476187-C-T 20314301-C-T BY223529 DYZ19 ***
22476188-G-A 20314302-G-A DYZ19 ***
22484318-A-C 20322432-A-C DYZ19 ***
22484333-A-G 20322447-A-G BY12381 DYZ19 ***
22484341-A-T 20322455-A-T DYZ19 ***
22484392-G-C 20322506-G-C DYZ19 ***
22485236-C-A 20323350-C-A DYZ19 ***
22487860-C-T 20325974-C-T DYZ19 ***
22508002-G-A 20346116-G-A BY225423 DYZ19 ***
22508014-T-A 20346128-T-A DYZ19 ***
22508047-T-C 20346161-T-C DYZ19 ***
22508546-TTAG-T 20346660-TTAG-T DYZ19 ***
22509644-C-G 20347758-C-G DYZ19 ***
22509684-T-C 20347798-T-C DYZ19 ***
22511053-T-A 20349167-T-A DYZ19 ***
22914674-CAAAA-C,CAAA 20752788-CAAAA-C,CAAA 27×A***
23041233-G-A 20879347-G-A ***
23041237-AGTTGC-A 20879351-AGTTGC-A ***
23193126-T-G 21031240-T-G ***
23388271-C-T 21226385-C-T ***
23388272-T-A 21226386-T-A ***
23388276-T-G 21226390-T-G ***
23388278-GTTTT-G 21226392-GTTTT-G ***
23388282-T-TAAAA 21226396-T-TAAAA ***
23388285-C-A 21226399-C-A ***
23388289-T-A 21226403-T-A ***
23388290-A-G 21226404-A-G ***
23388298-C-T 21226412-C-T ***
23425019-A-G 21263133-A-G ***
23505495-CAA-C,CAAA 21343609-CAA-C,CAAA 23×A***
23747205-CTTTT-C,CTT 21585319-CTTTT-C,CTT 29×T***
23838741-T-C 21676855-T-C ***
24422425-C-CCT 22276278-C-CCT ***
24447008-G-A 22300861-G-A ***
26415162-CA-C 24269015-CA-C P1_Y1 9×A***
26922137-G-GA 24775990-G-GA P1_r3 9×A***
26970927-C-CTT 24824780-C-CTT P1_r4 12×T***
27527418-GT-G 25381271-GT-G P1_Y2 ***
27527422-T-TG 25381275-T-TG P1_Y2 ***
27527424-T-C 25381277-T-C P1_Y2 ***
27527428-T-A 25381281-T-A P1_Y2 ***
27527431-T-A 25381284-T-A P1_Y2 ***
27527434-TG-T 25381287-TG-T P1_Y2 ***
27527439-T-TA 25381292-T-TA P1_Y2 ***
27967370-A-G 25821223-A-G P1_Y2 ***
28024704-CA-C 25878557-CA-C P1_Y2 9×A***
28528977-G-A 26382830-G-A ***
28528986-G-A 26382839-G-A ***
28543938-C-T 26397791-C-T ***
26534810-A- ***
26645281-GAA- ***
26645284-TGTAAGGGA- ***
56685723-C-T ***
56685759-T-A ***
56685761-G-T ***
56685762-C-T ***
56685778-A-T ***
56707134-G-T ***
56826021-AG-A ***
56826034-C-CGATTGCATTCCATTT ***
56826866-CCATTCCATTCGAGACTGTACTATTACACTCCATTCGATTCCATTCCATTCGATTA- ***
56826966-A- ***
56827518-TTTCCTTTCCTTTCCTTTCCATTCCA- ***
56831940-T- ***
56835426-C- ***
56845017-ATCACTGCACTGATCACCCATGTGATAT- ***
56845046-ACTCTTGTCTAGGCTCTGCCTATAG- ***
56855060-C-A ***
56858352-G-C ***
56858359-A-AGTGTATAATGGCATTACTCATAATGGACCCAAGCTTG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.