Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > ZP112

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N124330
13451740-A-G 11296064-A-G A*
25867804-C-G 23721657-C-G P1_Y1 A*
26062487-T-G 23916340-T-G P1_Y1 A*
22227233-G-T 20065347-G-T DYZ19 A*
18345211-G-A 16233331-G-A P6_Prx A*
13711854-G-T 11556178-G-T A*
20781396-G-C 18619510-G-C P4_Prx A*
19453398-G-A 17341518-G-A BY129188 YY+
22832535-G-T 20670649-G-T BY141132 YY+
22784843-G-A 20622957-G-A FGC75839 YY+
22287334-A-T 20125448-A-T BY216123 DYZ19 +
22238777-C-A 20076891-C-A BY213836 DYZ19 +
13653203-A-T 11497527-A-T BY156193 +
21342895-C-T 19181009-C-T Y106190 YY+
9860470-A-G 10022861-A-G ZP273 YY+
9798026-A-G 9960417-A-G BY42842 YY+
18982914-A-T 16871034-A-T BY125251 YY+
9037394-T-C 9199785-T-C BY77566 Y+
23654351-G-A 21492465-G-A BY44201 Y+
9013929-A-G 9176320-A-G BY77343 Y+
14102225-C-T 11981519-C-T BY211457 YY+
14102226-C-G 11981520-C-G BY211458 YY+
14406951-G-A 12286249-G-A BY95525 YY+
7523068-A-G 7655027-A-G BY65622 YY+
7333460-G-A 7465419-G-A BY64625 YY+
7251344-G-A 7383303-G-A BY64199 YY+
7246261-G-T 7378220-G-T BY64137 YY+
17803696-C-T 15691816-C-T Y72367 YY+
6992794-C-T 7124753-C-T BY62772 YY+
6696011-A-T 6827970-A-T ZP272 YY+
15736666-C-G 13624786-C-G BY103716 YY+
15942422-C-A 13830542-C-A BY105031 YY+
23070850-A-G 20908964-A-G BY142750 YY+
17645489-A-AATTT 15533609-A-AATTT 11×ATTT+
18946467-C-G 16834587-C-G BY55126 YY+
17119692-A-G 15007812-A-G A671A675 YY+
25971171-T-G 23825024-T-G BY209026 P1_Y1 +
8680917-T-C 8812876-T-C BY75141 YY+
28764514-C-T 26618367-C-T Y83315Y113404 +
16980925-G-GT 14869045-G-GT 10×T*
22275693-G-T 20113807-G-T BY215679 DYZ19 *
17862536-TTGTT-T,TTGTG 15750656-TTGTT-T,TTGTG *
22422583-A-T 20260697-A-T DYZ19 *
22432633-G-C 20270747-G-C DYZ19 *
15659928-TAA-T 13548048-TAA-T 15×A*
22301803-A-G 20139917-A-G DYZ19 *
14718154-G-T 12606222-G-T **
10956646-T-A **
10958861-C-G **
14430393-G-A 12309666-G-A **
10956638-C-G **
14530643-C-A 12418844-C-A **
10958858-TTCCAC-T **
14562754-C-A 12450954-C-A **
10963072-C-A **
10999705-A-T **
14995287-T-C 12883372-T-C **
10955609-C-A **
14776907-G-T 12664976-G-T **
14788700-C-A 12676771-C-A **
10973015-C-A **
10946618-C-G **
15050073-T-C 12938164-T-C **
15052984-T-C 12941075-T-C **
15280233-C-A 13168332-C-A **
15497367-C-T 13385487-C-T **
15611837-G-A 13499957-G-A **
15646361-G-T 13534481-G-T **
10940937-C-T **
16045078-C-A 13933198-C-A **
14067856-C-A 11947150-C-A **
14029070-T-G 11908364-T-G **
14029308-G-T 11908602-G-T **
16465898-G-T 14354018-G-T **
11012314-A-T **
11016379-T-A **
11021844-C-T **
10999696-T-G **
10999694-T-C **
10999691-T-C **
11028057-C-A **
11030841-C-A **
11032326-G-C **
10999663-C-T **
10999653-C-T **
13329650-G-T 11173974-G-T **
13405649-G-T 11249973-G-T **
13429379-C-A 11273703-C-A **
13578534-A-G 11422858-A-G **
10999708-G-C **
13944761-C-T 11824055-C-T **
14025912-A-G 11905206-A-G **
10973884-A-C **
10984225-C-A **
13962143-C-A 11841437-C-A **
13961929-A-ATTT 11841223-A-ATTT 8×T**
10984502-A-T **
11650945-T-C **
13600869-C-A 11445193-C-A **
11650932-G-C **
11650928-G-GA **
11650925-TC-T **
10984517-T-C **
10984531-TCA-T **
10999466-T-A **
16355002-G-T 14243122-G-T **
17703383-G-A 15591503-G-A **
16704402-G-T 14592522-G-T **
22542433-A-C 20380547-A-C **
24016975-CAG-C 21870828-CAG-C **
23545103-T-G 21383217-T-G **
23421145-T-A 21259259-T-A **
23343732-C-A 21181846-C-A **
23338086-C-A 21176200-C-A **
22775030-G-A 20613144-G-A **
22653291-TA-T 20491405-TA-T **
22089876-C-A 19927990-C-A **
24409134-C-A 22262987-C-A **
22078175-C-A 19916289-C-A **
22076262-G-T 19914376-G-T **
21934601-T-G 19772715-T-G **
21551437-G-T 19389551-G-T **
21550108-T-A 19388222-T-A **
21383181-G-A 19221295-G-A **
21189635-C-A 19027749-C-A **
24016986-C-T 21870839-C-T 15×T**
25592958-C-A 23446811-C-A P1_gr1 **
21127629-A-G 18965743-A-G **
28485375-C-A 26339228-C-A **
56763522-G-T **
56724767-T-C **
28732822-C-A 26586675-C-A **
28719848-C-T 26573701-C-T **
28649079-C-A 26502932-C-A **
28583107-G-T 26436960-G-T **
28496241-G-T 26350094-G-T **
28234397-A-T 26088250-A-T P1_b4 **
26010222-G-T 23864075-G-T P1_Y1 **
28147148-G-T 26001001-G-T P1_b4 **
28147122-C-A 26000975-C-A P1_b4 **
27584552-G-T 25438405-G-T P1_Y2 **
26613325-A-G 24467178-A-G P1_g2 **
26453047-T-G 24306900-T-G P1_Y1 **
26453044-T-G 24306897-T-G P1_Y1 **
26376529-A-T 24230382-A-T P1_Y1 **
26273303-A-C 24127156-A-C P1_Y1 **
21146260-A-G 18984374-A-G **
21124021-GC-G 18962135-GC-G **
16779123-C-A 14667243-C-A **
17597745-A-AC 15485865-A-AC **
18263670-A-G 16151790-A-G **
18249797-C-A 16137917-C-A **
18020854-G-A 15908974-G-A **
17871918-C-A 15760038-C-A **
10932822-C-A **
17666517-C-A 15554637-C-A **
17616694-C-A 15504814-C-A **
17596497-C-A 15484617-C-A **
18329467-A-T 16217587-A-T P6_Prx **
17581847-TG-T 15469967-TG-T **
17540483-A-G 15428603-A-G **
17501625-G-T 15389745-G-T **
17387492-T-G 15275612-T-G **
17367637-C-A 15255757-C-A **
17323493-G-A 15211613-G-A **
17103975-C-T 14992095-C-T **
18312188-A-AC 16200308-A-AC P6_Prx **
18329477-A-T 16217597-A-T P6_Prx **
21124019-T-A 18962133-T-A **
19673223-C-A 17561343-C-A P5_Prx **
21124013-T-A 18962127-T-A **
21124008-A-G 18962122-A-G **
21096141-A-C 18934255-A-C **
20943521-T-TGC 18781635-T-TGC P4_Dst **
19853769-T-A 17741889-T-A P5_Prx **
19759337-C-CTCTCTG 17647457-C-CTCTCTG P5_Prx **
19673228-C-A 17561348-C-A P5_Prx **
19313662-C-A 17201782-C-A **
18329500-A-T 16217620-A-T P6_Prx **
19075028-C-A 16963148-C-A **
18959315-A-AG 16847435-A-AG **
18923340-C-A 16811460-C-A **
18923328-C-A 16811448-C-A **
18826603-C-A 16714723-C-A **
18810695-T-G 16698815-T-G **
18654778-C-A 16542898-C-A **
18366105-G-T 16254225-G-T P6_Prx **
10934715-C-T **
56843902-C-A **
10925726-C-A **
10900592-T-C **
15192717-C-A 13080803-C-A **
10955525-C-A **
6000689-T-TA 6132648-T-TA 9×A**
22760738-C-A 20598852-C-A **
16226515-C-A 14114635-C-A **
10682744-C-A **
10956800-A-C **
13989019-C-A 11868313-C-A **
6648707-C-A 6780666-C-A **
14933826-C-A 12821891-C-A **
10866096-C-T **
10785576-C-A **
5720833-T-TA 5852792-T-TA 9×A**
8702851-C-A 8834810-C-A **
10787368-C-T **
10892508-C-G **
22044149-C-A 19882263-C-A **
13600874-C-A 11445198-C-A **
20229560-AC-A 18067674-AC-A P5_Dst **
18195327-A-G 16083447-A-G **
10915625-G-T **
5448819-C-A 5580778-C-A **
5267080-C-A 5399039-C-A **
5228435-C-T 5360394-C-T **
4969366-C-A 5101325-C-A **
4946171-G-A 5078130-G-A **
4558331-G-T 4690290-G-T **
4445948-C-A 4577907-C-A **
4178441-A-T 4310400-A-T **
10901243-A-T **
3768021-C-A 3899980-C-A **
3627497-T-C 3759456-T-C **
3606202-C-A 3738161-C-A **
3402152-C-A 3534111-C-A **
2702973-C-A 2834932-C-A **
2649685-G-T 2781644-G-T **
56847075-G-A **
10901256-T-A **
10866072-C-A **
11012307-C-G **
5666595-G-T 5798554-G-T **
10753892-G-T **
15758504-C-A 13646624-C-A **
2860254-C-A 2992213-C-A **
6582476-C-A 6714435-C-A **
5755255-C-A 5887214-C-A **
20252864-G-T 18090978-G-T P5_Dst **
10901199-C-G **
20019186-T-A 17907306-T-A P5_Prx **
10956654-G-A **
18328804-C-AAA 16216924-C-AAA P6_Prx **
8216571-AT-A 8348530-AT-A 9×T**
10684286-T-C **
10684282-T-G **
22538671-GA-G 20376785-GA-G 9×A**
13859410-G-C 11738704-G-C **
8856896-C-A 8988855-C-A MF1759 **
24485692-GTTATTTTATTTTATT-G 22339545-GTTATTTTATTTTATT-G 13×TTATT**
17319949-G-A 15208069-G-A 4×AGAA**
18039366-ATTTTTTT-A 15927486-ATTTTTTT-A 30×T**
2845258-AAG-A 2977217-AAG-A **
3591208-C-A 3723167-C-A **
14912987-C-A 12801054-C-A **
14073972-C-A 11953266-C-A **
27546763-A-T 25400616-A-T P1_Y2 **
4769326-C-A 4901285-C-A **
16904707-C-A 14792827-C-A **
3706847-G-GTA 3838806-G-GTA **
19467070-C-A 17355190-C-A **
56850359-C-G **
3876117-C-A 4008076-C-A **
14718095-G-T 12606163-G-T **
28147109-A-T 26000962-A-T P1_b4 **
10866076-C-A **
27952138-C-A 25805991-C-A P1_Y2 **
7670776-C-A 7802735-C-A **
21149582-G-GTTT 18987696-G-GTTT 27×T**
14698499-C-A 12586565-C-A **
15168417-C-A 13056503-C-A **
23415342-ATTT-A 21253456-ATTT-A 21×T**
5567982-C-T 5699941-C-T **
4365433-C-A 4497392-C-A **
10660741-T-TTTCCATTCCA **
10789812-C-T **
10780368-C-T **
8501567-C-A 8633526-C-A **
9119284-G-T **
9625849-C-G 9788240-C-G IR3_Prx **
10811136-T-A **
10805382-T-C **
9625850-A-T 9788241-A-T IR3_Prx **
9625859-A-T 9788250-A-T IR3_Prx **
9774379-C-A 9936770-C-A **
10800501-A-C **
9805156-C-A 9967547-C-A **
9928970-C-A 10091361-C-A **
10015635-TTTG-T 10178026-TTTG-T 5×TTG**
10660593-C-A **
10665793-C-A **
10822575-C-A **
10770021-C-A **
10776203-T-C **
10776177-CTGCAT-C **
10776151-A-C **
10783842-T-C **
10783861-T-C **
10770600-C-A **
10764661-C-A **
10789811-C-A **
10755876-T-C **
10693849-C-A **
10783886-C-T **
10787363-G-T **
10683218-CA-C **
10789810-T-C **
10817875-C-A **
7780758-CCAAACCAGA-C 7912717-CCAAACCAGA-C **
10837910-C-T **
10901261-G-A **
5995033-G-T 6126992-G-T **
6312787-T-TA 6444746-T-TA IR3_Dst **
10901239-T-C **
10901242-C-T **
10901217-T-A **
6353985-G-T 6485944-G-T **
6465003-T-A 6596962-T-A **
5696480-G-T 5828439-G-T **
7513066-A-G 7645025-A-G **
6528815-C-A 6660774-C-A **
6981362-A-G 7113321-A-G **
7027738-T-A 7159697-T-A **
5666625-C-A 5798584-C-A **
7081278-G-T 7213237-G-T **
10901266-A-T **
10901216-C-G **
10901214-T-A **
7188381-C-A 7320340-C-A **
7214384-C-A 7346343-C-A **
7228964-G-A 7360923-G-A **
10892542-T-A **
7242475-C-A 7374434-C-A **
7256183-C-A 7388142-C-A **
10844442-C-G **
7358171-C-A 7490130-C-A **
7436162-C-A 7568121-C-A **
5761396-C-A 5893355-C-A **
28787992-GGAACA-G 26641845-GGAACA-G ***
11025434-A-CGGTCC ***
15969956-T-TAA 13858076-T-TAA 20×A***
28600818-C-A 26454671-C-A ***
10956592-TC-T ***
10787554-TTCCAC-T ***
10796663-A-C ***
7084153-CAA-C 7216112-CAA-C 12×A***
10796679-T-TAG ***
6595242-TCT-T,TCA 6727201-TCT-T,TCA ***
23197346-C-T 21035460-C-T ***
17018680-C-A 14906800-C-A ***
22998737-C-A 20836851-C-A ***
15324319-CTTT-C,CT 13212437-CTTT-C,CT 25×T***
16931796-C-T 14819916-C-T ***
16730003-GAAAA-G,GAAA 14618123-GAAAA-G,GAAA 17×A***
16680701-AT-A 14568821-AT-A ***
16620388-C-A 14508508-C-A M9934 ***
4757536-C-A 4889495-C-A ***
16426174-G-T 14314294-G-T ***
17598066-C-A 15486186-C-A ***
4215946-A-G 4347905-A-G ***
16006266-C-A 13894386-C-A ***
15209529-AAT-A 13097615-AAT-A ***
8631372-G-T 8763331-G-T ***
18614413-C-A 16502533-C-A ***
18825756-C-A 16713876-C-A ***
7762151-C-A 7894110-C-A ***
19049637-C-A 16937757-C-A ***
16786213-CTT-C,CTTT 14674333-CTT-C,CTTT 22×T***
21494514-C-A 19332628-C-A ***
19261128-CTTTTTT-C 17149248-CTTTTTT-C 21×T***
22173942-C-A 20012056-C-A ***
10954330-C-A ***
18668066-TAA-T 16556186-TAA-T 12×A***
10672713-T-A ***
10672113-C-A ***
17032478-C-A 14920598-C-A ***
14060323-C-A 11939617-C-A ***
23350670-C-A 21188784-C-A ***
10011969-G-A 10174360-G-A ***
13810923-G-T 11690217-G-T ***
17283135-C-A 15171255-C-A ***
9798063-GTTTTT-G 9960454-GTTTTT-G 17×T***
14048085-C-A 11927379-C-A ***
10934793-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N124330931188976075967516950
Used in age calculations931188976075967516950
Counts of SNPs2425
Variant counts last updated 2019-07-19 22:54:11.



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