Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > A159 > Z17981 > Z17983 > BY21825 > BY34719

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
541995
25982578-G-GA 23836431-G-GA P1_Y1 9×AA*
17994379-C-T 15882499-C-T P7_Prx YA*
24262108-C-CT 22115961-C-CT P3_b1 9×TA*
8202918-C-A 8334877-C-A BY53741 YY+
7046070-C-A 7178029-C-A BY62980 YY+
22445277-T-G 20283391-T-G DYZ19 +
2687110-C-G 2819069-C-G BY55798 YY+
22093805-T-A 19931919-T-A A2028 Y12667 YY+
15712193-G-T 13600313-G-T BY103502 YY+
15710601-G-T 13598721-G-T BY103475 YY+
21947511-A-G 19785625-A-G BY136609 YY+
15512586-A-C 13400706-A-C BY102109 YY+
7427502-T-C 7559461-T-C BY65170 YY+
7463593-G-A 7595552-G-A BY65372 IR1_L +
22231167-A-G 20069281-A-G DYZ19 *
19134848-G-GTGT 17022968-G-GTGT Z2111 12×TGT*
14083949-A-AATAGATAGATAGATAG 11963243-A-AATAGATAGATAGATAG 12×ATAG*
10866684-T-C **
10839618-A-T **
10850454-C-A **
10903482-G-T **
10899161-C-A **
10863264-T-C **
10899154-C-T **
10899142-CT-C **
10864481-C-A **
10875282-C-A **
10888179-A-T **
10899139-C-CAA **
10899124-A-G **
10876857-C-T **
10877307-TCATTGCACTCCATTCCATTCCATTC-T **
10878166-ACCCC-A **
10880820-C-A **
10888210-G-T **
10924444-A-T **
10880843-C-A **
10888205-A-T **
10964764-ATCTAT-A **
10924459-C-T **
11002044-A-AATCTG **
13553644-A-T 11397968-A-T **
13461732-C-A 11306056-C-A **
13330938-C-A 11175262-C-A **
13233386-A-G 11077710-A-G **
13227982-G-A 11072306-G-A **
13226567-C-A 11070891-C-A **
13217835-T-G 11062159-T-G **
11030521-C-A **
11024302-C-A **
11004456-A-C **
11002097-T-C **
11002030-C-T **
10925671-T-C **
10992365-C-T **
10987670-A-C **
10983518-TGGCAC-T **
10976229-C-T **
10974346-G-T **
10972134-T-A **
10969252-A-C **
10964791-C-T **
10964786-C-G **
10827912-C-A **
10950420-T-C **
10941152-A-T **
10827914-C-A **
10800772-C-T **
10827911-A-G **
8673138-C-A 8805097-C-A **
10654932-C-A **
10618131-A-C **
10083496-CT-C 10245887-CT-C **
10024384-T-G 10186775-T-G **
10023666-TTCTC-T 10186057-TTCTC-T **
10003269-G-T 10165660-G-T **
9971698-A-C 10134089-A-C **
9956364-T-TAAA 10118755-T-TAAA 16×A**
9784676-C-A 9947067-C-A **
9482180-C-A 9644571-C-A **
9108570-G-T **
8741604-T-G 8873563-T-G **
8077875-C-A 8209834-C-A **
10667978-A-T **
7918499-C-A 8050458-C-A **
7359765-TAA-T 7491724-TAA-T **
7154881-C-T 7286840-C-T **
7116250-T-C 7248209-T-C **
7086658-A-C 7218617-A-C **
7042624-C-A 7174583-C-A **
7019176-C-A 7151135-C-A **
59030572-T-TTAA 56884425-T-TTAA 8×TA**
6642697-T-G 6774656-T-G **
6634256-T-G 6766215-T-G **
6622780-C-A 6754739-C-A **
6587382-C-A 6719341-C-A **
10656310-C-G **
10667996-G-T **
10826132-G-T **
10774051-G-C **
10818694-T-G **
10815925-C-T **
10813394-C-A **
13595059-TG-T 11439383-TG-T **
10799240-C-A **
10792683-C-A **
10791282-A-T **
10786013-C-A **
10784810-C-A **
10783678-C-A **
10774162-T-C **
10774094-G-C **
10774031-A-T **
10668001-C-CTCTAG **
10765664-C-A **
10753325-C-A **
10749352-C-A **
10689166-T-G **
10689160-T-C **
10689024-ATTCCAT-A **
10687639-C-T **
10686498-T-A **
10671011-C-T **
10671010-C-G **
10669371-T-C **
10668024-C-G **
13579766-A-G 11424090-A-G **
13880201-C-A 11759495-C-A **
13708483-A-C 11552807-A-C **
22252541-G-T 20090655-G-T BY22907 DYZ19 **
23029588-G-T 20867702-G-T **
22979436-C-A 20817550-C-A **
22965412-C-A 20803526-C-A **
22962003-TTG-T 20800117-TTG-T **
22871948-C-A 20710062-C-A **
22797669-G-T 20635783-G-T **
22598745-CAAAA-C 20436859-CAAAA-C 15×A**
22296118-T-G 20134232-T-G DYZ19 **
22281885-C-A 20119999-C-A DYZ19 **
22252553-T-A 20090667-T-A DYZ19 **
22252542-G-T 20090656-G-T DYZ19 **
22236210-A-C 20074324-A-C DYZ19 **
24013857-ATATATATATATATATATATATAT-A 21867710-ATATATATATATATATATATATAT-A **
22049125-C-A 19887239-C-A **
21966493-T-C 19804607-T-C **
21738700-T-A 19576814-T-A **
21703273-C-A 19541387-C-A **
21449481-G-C 19287595-G-C **
21275334-A-G 19113448-A-G **
21196916-G-T 19035030-G-T **
21132681-G-GTT 18970795-G-GTT 18×T**
20855843-G-T 18693957-G-T P4_Dst **
20793521-TAC-T 18631635-TAC-T P4_Prx 8×AC**
20784469-A-C 18622583-A-C P4_Prx **
20760488-T-G 18598602-T-G P4_Prx **
23848574-G-T 21686688-G-T **
24270821-G-T 22124674-G-T P3_b1 **
20655026-GT-G 18493140-GT-G P4_Prx **
28763214-C-A 26617067-C-A **
56886989-T-G **
56886971-T-G **
56871490-C-T **
56847888-T-A **
56841474-T-C **
56684058-G-C **
56684050-G-C **
56684045-C-A **
56684040-A-C **
56684026-G-C **
28798835-A-T 26652688-A-T **
28791027-T-C 26644880-T-C **
28761938-C-A 26615791-C-A **
24475279-T-G 22329132-T-G **
28742063-C-A 26595916-C-A **
28688324-C-A 26542177-C-A **
28429504-T-A 26283357-T-A P1_gr2 **
27971798-T-A 25825651-T-A P1_Y2 **
27936765-A-AT 25790618-A-AT P1_Y2 **
27861923-C-A 25715776-C-A P1_Y2 **
27861907-AC-A 25715760-AC-A P1_Y2 **
26440614-G-T 24294467-G-T P1_Y1 **
26421579-C-A 24275432-C-A P1_Y1 **
26167734-A-G 24021587-A-G P1_Y1 **
25947214-GT-G 23801067-GT-G P1_Y1 **
25461445-T-A 23315298-T-A P2_r2 **
20661831-A-AC 18499945-A-AC P4_Prx **
20602133-C-A 18440247-C-A P5_Dst 10×T**
13708483-A-ATGGAT 11552807-A-ATGGAT **
15185018-A-C 13073104-A-C **
16941592-G-A 14829712-G-A **
16424815-C-T 14312935-C-T **
16422793-G-T 14310913-G-T **
16380239-G-T 14268359-G-T **
16063056-C-A 13951176-C-A **
16053564-A-G 13941684-A-G **
15892165-G-T 13780285-G-T **
15791089-C-A 13679209-C-A **
15717854-A-G 13605974-A-G **
15653469-G-A 13541589-G-A **
15216166-G-A 13104252-G-A **
15131988-C-A 13020075-C-A **
17433739-A-G 15321859-A-G **
12675898-ATTT-A **
14785046-C-A 12673116-C-A **
14712116-T-A 12600183-T-A **
14660678-G-T 12548743-G-T **
14585639-C-A 12473839-C-A **
14526297-G-T 12414498-G-T **
13985198-C-A 11864492-C-A **
13938711-A-G 11818005-A-G **
6580347-T-G 6712306-T-G **
11647420-G-T **
11643693-G-T **
13708860-G-T 11553184-G-T **
17187416-A-G 15075536-A-G **
17544841-C-A 15432961-C-A **
20602123-C-A 18440237-C-A P5_Dst **
19423869-A-G 17311989-A-G **
20569374-G-T 18407488-G-T P5_Dst **
20423978-TCTC-T 18262092-TCTC-T P5_Dst **
20311600-A-AC 18149714-A-AC P5_Dst **
20311585-A-T 18149699-A-T P5_Dst **
20311568-T-A 18149682-T-A P5_Dst **
20230504-G-T 18068618-G-T P5_Dst **
20030127-A-G 17918247-A-G P5_Prx **
19751617-A-G 17639737-A-G P5_Prx **
19610259-C-A 17498379-C-A P5_Prx **
19531523-C-A 17419643-C-A **
19448336-G-T 17336456-G-T **
19438545-A-C 17326665-A-C **
19394108-T-G 17282228-T-G **
17628369-C-A 15516489-C-A **
19302560-G-T 17190680-G-T **
19249593-C-A 17137713-C-A **
19107401-TATAAAAA-T 16995521-TATAAAAA-T **
18966208-C-A 16854328-C-A **
18930069-T-G 16818189-T-G **
18748851-C-A 16636971-C-A **
18703146-C-A 16591266-C-A **
18630809-C-A 16518929-C-A **
18325752-C-A 16213872-C-A P6_Prx **
18188493-C-A 16076613-C-A **
18139466-C-A 16027586-C-A **
17776732-G-T 15664852-G-T **
6580361-T-G 6712320-T-G **
6642772-A-T 6774731-A-T **
6516729-T-G 6648688-T-G **
10992350-C-A **
10668026-C-T **
10982264-A-C **
10801965-C-T **
10992312-T-A **
10744262-C-T **
22236202-G-T 20074316-G-T DYZ19 **
10801949-A-G **
10688256-A-T **
10688237-CTTCACTGCAG-C **
10688229-C-T **
10785330-A-C **
20432864-AC-A 18270978-AC-A P5_Dst **
10924442-C-A **
19847634-CTT-C 17735754-CTT-C P5_Prx 28×T**
10849712-C-G **
11666659-C-A **
28791226-TGGAAA-T 26645079-TGGAAA-T **
10682702-T-A **
26991406-C-A 24845259-C-A P1_r4 **
10774026-A-G **
10687594-C-A **
10687593-T-G **
10687588-T-G **
11038160-C-G **
14051995-C-A 11931289-C-A **
18733576-C-A 16621696-C-A **
10744263-A-G **
10950621-C-A **
10950616-T-C **
24305293-A-C 22159146-A-C P3_t1 **
13927403-C-A 11806697-C-A **
7042548-C-A 7174507-C-A **
11021479-T-G **
13926552-C-A 11805846-C-A **
15158878-C-A 13046964-C-A **
13570873-C-A 11415197-C-A **
18274906-G-T 16163026-G-T P6_Prx **
10744275-T-G **
10744249-T-A **
13457736-C-CAATGG 11302060-C-CAATGG **
6465568-C-A 6597527-C-A **
16104350-C-A 13992470-C-A P8_Prx **
10688299-G-C **
10969265-C-A **
10969258-C-T **
10924484-A-T **
3033181-C-A 3165140-C-A **
13854921-GA-G 11734215-GA-G 8×A**
10995781-C-A **
10671003-T-C **
13457754-T-TCCAAG 11302078-T-TCCAAG **
7311825-G-T 7443784-G-T **
10757599-G-C **
10950628-ATTCCG-A **
14142337-A-AT 12021631-A-AT 13×T**
10757486-C-A **
10757479-C-T **
11021502-CTCCCT-C **
11021500-T-C **
11021481-CAATTC-G **
10969223-C-T **
10691265-A-T **
17006261-C-A 14894381-C-A 17×T**
13457726-C-A 11302050-C-A **
13480377-C-A 11324701-C-A A17123 **
13472008-T-C 11316332-T-C **
15140903-C-CT 13028990-C-CT 11×T**
10757502-TTCCTA-T **
13715662-A-G 11559986-A-G **
6654989-C-A 6786948-C-A **
9966034-G-A 10128425-G-A **
9965994-C-T 10128385-C-T **
9965960-A-G 10128351-A-G **
19248303-C-A 17136423-C-A **
22842278-C-A 20680392-C-A **
14544146-CGT-C 12432347-CGT-C 8×GT**
59027472-T-TA 56881325-T-TA 11×A**
17502468-T-C 15390588-T-C CTS7481 **
3832233-AACAC-A 3964192-AACAC-A 22×AC**
10757499-A-C **
10757519-T-C **
10757590-A-C **
11038155-T-G **
10973948-C-CATTAA **
10670991-T-C **
10763062-A-G **
10763056-C-A **
10763049-T-C **
10763029-T-TCTATC **
10801948-A-T **
10651559-T-A **
3550572-CT-A 3682531-CT-A **
10947677-C-A **
11028255-C-T **
10689015-T-C **
10757536-C-A **
10689011-T-G **
10992356-A-C **
6952-T-A **
10828530-G-T **
24270917-A-ATG 22124770-A-ATG P3_b1 19×T**
10768566-C-G **
10799539-C-A **
14570756-A-ATT 12458956-A-ATT 22×T**
10757570-C-G **
10757565-T-C **
10757550-T-C **
10950627-C-A **
17006253-A-T 14894373-A-T **
30932-T-A **
2952952-G-T 3084911-G-T **
3978347-C-A 4110306-C-A **
3875997-C-A 4007956-C-A **
3753912-C-A 3885871-C-A **
3646247-G-T 3778206-G-T **
3568455-C-A 3700414-C-A **
3550666-C-A 3682625-C-A **
3500578-C-T 3632537-C-T **
3353814-G-T 3485773-G-T **
3148021-C-A 3279980-C-A **
3070538-C-A 3202497-C-A **
3051387-ATT-A 3183346-ATT-A 10×T**
2729900-C-A 2861859-C-A **
4142145-G-T 4274104-G-T **
2729647-TC-T 2861606-TC-T **
10961410-C-A **
18165590-C-A 16053710-C-A **
10779398-C-A **
10937404-C-G **
10976293-C-A **
10976284-T-C **
10976281-A-C **
10976279-C-A **
7340959-T-G 7472918-T-G **
10983749-G-ATTCTT **
4118208-C-T 4250167-C-T **
4142493-G-T 4274452-G-T **
10976233-C-A **
5471826-C-T 5603785-C-T **
6368191-G-C 6500150-G-C **
6353774-G-A 6485733-G-A **
6167465-T-C 6299424-T-C IR3_Dst **
6080084-G-C 6212043-G-C **
5996903-T-A 6128862-T-A **
5905332-T-C 6037291-T-C **
5871765-G-T 6003724-G-T **
5767496-G-A 5899455-G-A **
5640051-C-A 5772010-C-A **
5627716-C-A 5759675-C-A **
5540534-C-A 5672493-C-A **
5302145-G-T 5434104-G-T **
4388023-T-A 4519982-T-A **
5269677-C-A 5401636-C-A **
5262007-G-T 5393966-G-T **
5088451-CTT-C 5220410-CTT-C 27×T**
5059373-G-T 5191332-G-T **
5009583-C-A 5141542-C-A **
4999891-C-A 5131850-C-A **
4652091-C-A 4784050-C-A **
4625715-G-GA 4757674-G-GA 9×A**
4618500-CAAA-C 4750459-CAAA-C 13×A**
4592609-C-A 4724568-C-A **
4443147-C-A 4575106-C-A **
10976245-C-T **
10950414-TTCCAG-T **
11001534-C-T **
21387220-C-A 19225334-C-A **
11001466-G-C **
7038406-C-A 7170365-C-A **
10899156-T-C **
10818696-A-T **
10818690-C-G **
17090869-G-T 14978989-G-T **
56750074-A-G **
10818698-C-T **
16783412-TAA-T 14671532-TAA-T 13×A**
21922102-AAG-A 19760216-AAG-A **
11002049-A-T **
14270003-C-A 12149297-C-A **
10964759-C-T **
16931678-G-T 14819798-G-T **
10976234-C-T **
7240220-C-A 7372179-C-A **
23398284-C-A 21236398-C-A **
13891920-CA-C 11771214-CA-C 11×A**
13236670-C-A 11080994-C-A **
11001442-C-A **
11004446-A-T **
26124457-AACG-A 23978310-AACG-A P1_Y1 **
10629088-A-T **
7154745-C-A 7286704-C-A **
23848154-G-T 21686268-G-T **
15909435-T-G 13797555-T-G **
10905279-G-T **
13209497-C-A 11053821-C-A **
11004434-C-G **
10950664-T-C **
18892466-T-G 16780586-T-G **
10950660-T-C **
10964819-CTGGACTCCAT-C **
15595094-C-A 13483214-C-A **
28621964-G-T 26475817-G-T **
10983392-C-A **
5829857-C-A 5961816-C-A **
10950659-T-C **
56835465-G-A ***
3148420-CTTTT-C 3280379-CTTTT-C 18×T***
10747040-T-C ***
6791255-G-C 6923214-G-C ***
13471975-G-A 11316299-G-A ***
10947669-C-A ***
6791242-A-G 6923201-A-G ***
7255126-T-C 7387085-T-C ***
13899937-ATTAT-A 11779231-ATTAT-A 5×TTAT***
6791253-G-A 6923212-G-A ***
15061690-C-CT 12949782-C-CT 13×T***
18959298-T-TAA 16847418-T-TAA 23×A***
58976984-C-A,T 56830837-C-A,T ***
6791252-T-C 6923211-T-C ***
13487743-T-A 11332067-T-A ***
10792404-T-C ***
10807049-ATTC-A,ACGA ***
9077213-G-T 9239604-G-T ***
16720541-G-T 14608661-G-T ***
10805721-A-G ***
24435646-T-TA 22289499-T-TA 9×A***
14557896-C-A 12446097-C-A ***
10807046-T-TCTA ***
10747026-T-TCCCTC ***
16045033-C-A 13933153-C-A ***
16692145-AC-A 14580265-AC-A ***
56833241-C-A ***
10834420-C-A ***
10987825-ATTC-A ***
7313579-C-A 7445538-C-A ***
2762697-C-A 2894656-C-A ***
56835267-G-A ***
19263496-GAA-G 17151616-GAA-G 14×A***
10807347-T-TTCCA ***
56831543-G-A ***
9063859-CTTT-C 9226250-CTTT-C 16×T***
11647830-G-A ***
22951102-CTT-C,CTTTTT 20789216-CTT-C,CTTTTT 13×T***
22885124-G-T 20723238-G-T ***
6791254-T-C 6923213-T-C ***
24220988-G-T 22074841-G-T P3_b1 ***
10750742-G-T ***
10647777-CTCCAT-C ***
6403645-A-T 6535604-A-T ***
13469949-T-A 11314273-T-A ***
13483292-C-G 11327616-C-G ***
10652958-TCCATT-T,TCCATA ***
56830350-T-C,G ***
8760517-CTTTTT-C,CTTTT 8892476-CTTTTT-C,CTTTT 20×T***
28815174-G-T 26669027-G-T ***
10988699-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 541995992396880618967928152
Used in age calculations992396880618967928152
Counts of SNPs109
Variant counts last updated 2018-06-18 21:27:46.



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