Fuller

BigY3: 424281, BigY2: 424281
MDKA Birth: United States > New York

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A353 > Z3026 > Z16250 > A114 > CTS4466/S1136 > S1115 > Z3023 > A212 > A6518

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
424281		BigY2
424281
9984849-G-A 10147240-G-A YA*
5089812-C-CT 5221771-C-CT 9×TA*
56830900-C-CT A*
6223140-T-C 6355099-T-C IR3_Dst A*
9138757-T-A 9301148-T-A BY78428 Y++
18946245-G-A 16834365-G-A BY125004 YY++
22066317-G-A 19904431-G-A BY137393 YY++
3527870-T-C 3659829-T-C FT90283 +
3542538-G-T 3674497-G-T FT90285 +
3984571-G-T 4116530-G-T FT90317 +
5166495-A-C 5298454-A-C FT90417 +
5373238-G-C 5505197-G-C FT90438 +
5607365-CT-C 5739324-CT-C +
5950319-G-C 6082278-G-C FT90494 +
17313273-C-T 15201393-C-T S7371 ZS4318 YY11×TGTAT*
4192848-G-T 4324807-G-T *
15548847-G-GACAC 13436967-G-GACAC 18×AC****
17313268-CTGTACTGTAT-C,CTGTATTGTAT 15201388-CTGTACTGTAT-C,CTGTATTGTAT *
25201099-G-A 23054952-G-A BY22638 g1 **
4191376-C-G 4323335-C-G **
13322446-T-TCC 11166770-T-TCC 9×C**
15815288-A-G 13703408-A-G **
13349048-C-T 11193372-C-T FGC16807 **
13460448-C-T 11304772-C-T **
13706837-C-G 11551161-C-G DYZ17 **
15815272-G-A 13703392-G-A **
28802688-G-T 26656541-G-T **
22428924-G-A 20267038-G-A DYZ19 **
13349054-G-A 11193378-G-A **
18340487-CAT-C 16228607-CAT-C P6_Prx **
15491909-ATGTG-A 13380029-ATGTG-A 16×TG**
10989442-T-G **
10925631-T-C **
10971527-C-A **
10748326-A-C **
7869105-A-C 8001064-A-C **
10668653-T-G **
10668663-T-C **
10746982-C-T **
18201197-C-A 16089317-C-A **
56735555-A-T **
58855283-C-CA 56735585-G-GT **
4389401-TG-T 4521360-TG-T **
10892091-C-A **
10982565-T-G **
10971752-C-A **
10668658-T-A **
10979542-C-G **
24300849-G-T 22154702-G-T P3_t1 **
17549399-C-A 15437519-C-A **
10947622-C-A **
10770676-T-G **
10770699-A-T **
28406856-C-A 26260709-C-A P1_gr2 **
10792790-T-C **
16180275-C-A 14068395-C-A **
10748284-T-C **
10825220-C-A **
10989884-T-G **
56728113-T-A **
13472115-A-C 11316439-A-C **
24300843-G-T 22154696-G-T P3_t1 **
24300851-G-T 22154704-G-T P3_t1 **
10761124-A-C **
28478897-C-A 26332750-C-A **
56850969-A-T **
10746924-G-C **
10664815-C-T **
21691945-C-A 19530059-C-A **
15963975-C-A 13852095-C-A **
22634820-CTT-C 20472934-CTT-C 14×T**
56771116-A-G **
10793676-A-C **
23080948-C-A 20919062-C-A **
8699787-C-A 8831746-C-A **
10761133-C-A **
11000426-T-TCATGAAACC **
10769591-T-A **
10769594-C-T **
10769603-C-T **
10769631-A-G **
10954308-T-C **
10796110-T-A **
14989127-C-A 12877193-C-A **
7422384-C-A 7554343-C-A **
23802430-C-CTT 21640544-C-CTT 13×T**
8293894-T-TA 8425853-T-TA 8×A**
19187415-C-A 17075535-C-A **
15132102-A-C 13020189-A-C **
10781207-A-C **
10976209-C-A **
11033878-C-A **
10764549-TCAC-T **
10989893-C-T **
16881532-A-AT 14769652-A-AT 10×T**
10684231-C-A **
19938632-A-C 17826752-A-C P5_Prx **
28797937-G-T 26651790-G-T **
15963966-T-G 13852086-T-G **
10746933-CAT-C **
10746937-CTGT-C **
10773174-C-T **
10796127-C-T **
10895860-C-A BY83968 **
10748314-T-C **
10825229-C-A **
14099843-T-G 11979137-T-G **
10945173-C-T **
24422468-C-A 22276321-C-A **
21874813-C-A 19712927-C-A **
10781258-C-A **
10781259-C-T **
11667282-C-A FT450985 DYZ17 **
10796906-C-G **
19732396-C-A 17620516-C-A P5_Prx **
2914987-G-T 3046946-G-T FGC40133 **
24624542-TG-T 22478395-TG-T P3_t2 **
19529306-A-G 17417426-A-G **
10882806-C-A **
15815261-C-T 13703381-C-T **
15815292-C-G 13703412-C-G Y41188 **
13460459-A-T 11304783-A-T **
11033910-C-T **
28622104-G-T 26475957-G-T **
14423899-AAAAT-A 12303174-AAAAT-A 4×AAAT**
11007428-A-C **
17480126-C-A 15368246-C-A **
20500944-A-AC 18339058-A-AC P5_Dst **
3435964-C-A 3567923-C-A **
10781234-C-A **
14914715-C-A 12802782-C-A **
19938645-T-G 17826765-T-G P5_Prx **
7894756-C-A 8026715-C-A **
10783653-T-G **
21368413-C-A 19206527-C-A **
13705074-C-T 11549398-C-T DYZ17 **
17580765-ATTT-A 15468885-ATTT-A 16×T**
10846889-ATTCCT-A **
10846915-T-G **
15815316-G-A 13703436-G-A **
11010583-C-A **
10968798-T-C **
4863375-G-T 4995334-G-T **
5800180-C-A 5932139-C-A **
13705466-G-T 11549790-G-T DYZ17 **
16114249-A-AAT 14002369-A-AAT P8_Prx **
16816675-C-CT 14704795-C-CT **
22295007-C-A 20133121-C-A DYZ19 **
18463118-AT-A 16351238-AT-A P6_Dst **
3284999-G-T 3416958-G-T **
10825167-C-A FT432867 **
13460458-G-A 11304782-G-A **
13322305-C-A 11166629-C-A **
10668630-C-G **
13895865-C-A 11775159-C-A **
13246880-GAAAAAAA-G 27×A**
24148074-C-A 22001927-C-A P3_b1 **
16180451-C-A 14068571-C-A **
10796862-CA-C **
10796874-T-C **
10796883-A-C **
10796899-C-A **
10796927-C-T **
2729672-T-G 2861631-T-G **
2772234-C-A 2904193-C-A **
2914975-C-A 3046934-C-A **
2959909-A-T 3091868-A-T **
3173726-C-A 3305685-C-A **
3501167-C-A 3633126-C-A **
3606727-G-T 3738686-G-T **
3853991-G-A 3985950-G-A **
4075964-A-C 4207923-A-C **
4142696-A-C 4274655-A-C **
4190577-C-A 4322536-C-A **
4215505-G-T 4347464-G-T FT278822 **
4243001-T-A 4374960-T-A **
4243085-C-A 4375044-C-A **
4374359-C-A 4506318-C-A **
4416622-T-A 4548581-T-A **
4937049-C-T 5069008-C-T **
5017751-C-A 5149710-C-A **
5022238-C-A 5154197-C-A **
5350676-C-A 5482635-C-A **
5523596-C-A 5655555-C-A **
5635252-T-G 5767211-T-G **
5659705-A-G 5791664-A-G **
5829249-C-A 5961208-C-A **
5864524-G-T 5996483-G-T **
5969179-T-A 6101138-T-A **
6343952-T-G 6475911-T-G **
6420347-T-A 6552306-T-A **
6424529-C-A 6556488-C-A **
6523749-C-A 6655708-C-A **
6582305-T-G 6714264-T-G **
6682328-C-A 6814287-C-A **
6816569-T-G 6948528-T-G **
7076638-A-T 7208597-A-T **
7076640-AATAC-A 7208599-AATAC-A **
7099341-T-C 7231300-T-C **
7102261-C-A 7234220-C-A **
7138348-G-T 7270307-G-T **
7201928-C-A 7333887-C-A **
7211070-T-G 7343029-T-G **
7214468-T-C 7346427-T-C **
7319989-C-A 7451948-C-A **
7381815-CT-C 7513774-CT-C **
7384835-T-G 7516794-T-G **
7409735-A-C 7541694-A-C **
7590810-G-T 7722769-G-T **
7630037-C-A 7761996-C-A **
7866030-C-A 7997989-C-A **
7968098-G-T 8100057-G-T **
8073236-G-A 8205195-G-A **
8117285-T-A 8249244-T-A **
8403272-C-CAA 8535231-C-CAA 28×A**
8668535-C-A 8800494-C-A **
9063120-C-A 9225511-C-A **
9557047-G-GGCA 9719438-G-GGCA IR3_Prx **
9557048-TG-T 9719439-TG-T IR3_Prx **
10651588-C-A **
10668041-C-A **
10668463-C-A **
10668641-C-CATGGA **
10668680-G-T **
10676690-T-A **
10678606-CCA-C **
10684284-C-A **
10685377-C-A **
10686613-CTCCAT-C **
10686692-A-C **
10687353-T-A **
10688175-CTT-C **
10688185-C-T **
10688793-TTTCCA-T **
10688851-C-G **
10690666-C-A **
10690945-C-A **
10744279-C-A **
10744286-C-G **
10748255-T-TA **
10748257-CA-C **
10752423-T-A **
10752491-T-A **
10760252-T-A **
10764547-T-TCC **
10773132-C-A **
10773138-A-T **
10773172-C-A **
10779741-T-G **
10781205-A-C **
10781209-A-AG **
10781213-T-G **
10781528-T-G **
10783475-C-A **
10792208-ATCCTACT-A **
10794281-CTTCAT-C **
10796864-T-TGTCCACTCCTC **
10801887-A-T **
10801891-C-A **
10810631-C-A **
10824434-T-G **
10824883-C-T **
10828222-A-G **
10830236-T-G **
10835126-C-A **
10845650-C-G **
10848949-TTTCAC-T **
10848964-C-T **
10863733-A-T **
10868890-T-C **
10889178-C-A **
10889195-T-G **
10893942-ATTCCATTCTC-A **
10896115-C-A **
10899246-T-G **
10899251-T-G **
10921192-GTTCCA-G **
10922407-A-ACCGAT **
10922424-G-T **
10928735-A-C **
10932861-C-A **
10932889-C-T **
10932890-CATTG-C **
10937575-C-T **
10938606-C-A **
10943769-C-A **
10945233-A-G **
10948990-T-G **
10948995-T-G **
10949040-T-G **
10955343-C-T **
10955460-C-A **
10957815-C-T **
10957840-C-T FT438163 **
10957842-C-G **
10957872-T-C **
10959810-C-A **
10961363-T-G **
10961400-CCACTA-C **
10962653-C-T **
10962658-C-CA **
10962664-TC-T **
10971534-T-G **
10971544-A-G **
10971683-G-T **
10974777-C-G **
10976995-C-T **
10977005-C-T **
10977319-T-G **
10977512-T-G **
10980226-A-T **
10980231-A-T **
10987221-C-A **
10989495-G-C **
10989918-CTCTCT-C **
10990498-T-G **
10992607-C-A **
10999117-C-A **
11001614-T-C **
11001615-G-T **
11001620-A-G **
11007472-C-T **
11010561-G-C **
11010576-C-A **
11010581-C-A **
11012342-G-T **
11014223-C-A **
11020267-C-T **
11024297-A-T **
11024302-C-G **
11024306-C-A **
11030039-C-CGTTCG **
11033843-C-A **
11033868-T-A **
13213587-C-A 11057911-C-A **
13223219-G-A 11067543-G-A **
13234465-A-C 11078789-A-C **
13253537-C-A 11097861-C-A **
13253567-A-C 11097891-A-C **
13322429-A-T 11166753-A-T **
13404624-A-C 11248948-A-C **
13429727-A-G 11274051-A-G **
13472058-G-A 11316382-G-A **
13594927-C-A 11439251-C-A **
13597288-C-A 11441612-C-A **
13598617-C-A 11442941-C-A **
13705507-A-T 11549831-A-T DYZ17 **
13706835-C-A 11551159-C-A DYZ17 **
11675194-G-T DYZ17 **
13803341-T-G 11682635-T-G DYZ17 **
13809558-G-C 11688852-G-C DYZ17 **
13857029-C-G 11736323-C-G DYZ17 **
13859116-A-G 11738410-A-G DYZ17 **
13888521-G-T 11767815-G-T **
13899936-A-T 11779230-A-T **
13902197-T-G 11781491-T-G **
13927409-C-A 11806703-C-A **
13960539-C-A 11839833-C-A **
13990158-A-G 11869452-A-G **
14002113-A-G 11881407-A-G **
14067102-C-A 11946396-C-A **
14168105-A-G 12047399-A-G **
14272701-T-A 12151995-T-A **
14380061-A-T 12259357-A-T **
14383076-C-A 12262372-C-A **
14431362-G-T 12310635-G-T **
14451232-T-G 12330505-T-G **
14561898-C-A 12450099-C-A **
14648952-C-A 12537017-C-A **
14691649-A-T 12579715-A-T **
14743703-C-A 12631772-C-A FT311932 **
14750263-C-A 12638332-C-A **
14831825-T-G 12719892-T-G **
14953431-C-A 12841505-C-A **
14994209-C-A 12882294-C-A **
15066333-C-A 12954424-C-A **
15114269-C-T 13002356-C-T **
15114810-T-G 13002897-T-G **
15138042-C-A 13026129-C-A **
15338791-T-G 13226909-T-G **
15446780-T-G 13334900-T-G **
15477878-G-T 13365998-G-T **
15541742-G-T 13429862-G-T **
15815242-C-G 13703362-C-G **
15815248-A-G 13703368-A-G **
15815254-G-A 13703374-G-A **
15815319-A-T 13703439-A-T **
15842869-A-C 13730989-A-C **
15944101-G-T 13832221-G-T **
15944180-G-T 13832300-G-T **
16033677-A-G 13921797-A-G **
16058699-C-A 13946819-C-A **
16062209-C-A 13950329-C-A **
16394387-C-A 14282507-C-A **
16422544-T-C 14310664-T-C **
16545440-G-C 14433560-G-C **
16704670-T-G 14592790-T-G **
16705942-A-G 14594062-A-G **
16971278-C-A 14859398-C-A **
17323537-G-T 15211657-G-T **
17440759-T-G 15328879-T-G **
17465015-C-A 15353135-C-A **
17538106-A-T 15426226-A-T **
17625917-C-A 15514037-C-A **
18080569-A-C 15968689-A-C **
18159178-A-C 16047298-A-C **
18159347-A-C 16047467-A-C **
18183310-T-A 16071430-T-A **
18194154-T-A 16082274-T-A **
18390176-A-C 16278296-A-C P6_Gap **
18455593-T-G 16343713-T-G P6_Dst **
18547207-C-A 16435327-C-A **
18733522-G-A 16621642-G-A **
18780414-C-A 16668534-C-A **
18794876-A-T 16682996-A-T **
18856104-T-A 16744224-T-A **
18868997-A-C 16757117-A-C **
18937470-A-C 16825590-A-C **
19042603-G-T 16930723-G-T **
19042640-A-G 16930760-A-G **
19318315-A-C 17206435-A-C **
19517817-C-A 17405937-C-A **
19529280-AT-A 17417400-AT-A **
19529296-A-G 17417416-A-G **
19529302-A-G 17417422-A-G **
19598969-G-T 17487089-G-T P5_Prx **
19686222-T-TG 17574342-T-TG P5_Prx **
19966745-G-T 17854865-G-T P5_Prx **
20330510-T-G 18168624-T-G P5_Dst **
20433577-G-T 18271691-G-T P5_Dst **
20569469-G-A 18407583-G-A P5_Dst **
20617566-A-C 18455680-A-C P4_Prx **
20620907-A-AC 18459021-A-AC P4_Prx **
20682528-T-G 18520642-T-G P4_Prx **
20757285-T-G 18595399-T-G P4_Prx **
20920907-G-T 18759021-G-T P4_Dst **
21090980-T-A 18929094-T-A **
21093439-T-A 18931553-T-A **
21162912-C-A 19001026-C-A **
21262352-G-A 19100466-G-A **
21437162-T-A 19275276-T-A **
21651182-C-A 19489296-C-A **
21697380-G-T 19535494-G-T **
21738594-C-A 19576708-C-A **
21827978-G-T 19666092-G-T **
21920399-G-T 19758513-G-T **
22045625-A-T 19883739-A-T YSC0001450 **
22069830-G-T 19907944-G-T **
22295021-T-C 20133135-T-C DYZ19 **
22420385-C-A 20258499-C-A DYZ19 **
22524896-C-G 20363010-C-G **
22839222-C-A 20677336-C-A **
23047749-A-C 20885863-A-C FTB34449 **
23092089-G-T 20930203-G-T **
23290143-G-T 21128257-G-T **
23317889-A-C 21156003-A-C **
23337193-A-C 21175307-A-C **
23419524-C-A 21257638-C-A **
23475700-T-G 21313814-T-G **
23495659-G-T 21333773-G-T **
23513553-G-C 21351667-G-C **
23563690-C-T 21401804-C-T **
23747205-C-CT 21585319-C-CT 29×T**
23825731-G-T 21663845-G-T **
24241907-A-C 22095760-A-C P3_b1 **
24300833-TTTTTTG-T 22154686-TTTTTTG-T P3_t1 **
24300857-C-A 22154710-C-A P3_t1 **
25298182-C-A 23152035-C-A P2_r1 **
26195019-T-A 24048872-T-A P1_Y1 **
26228681-C-A 24082534-C-A P1_Y1 **
27856435-G-T 25710288-G-T P1_Y2 **
28549390-G-T 26403243-G-T **
28552294-A-G 26406147-A-G **
28556257-A-C 26410110-A-C **
28608448-T-C 26462301-T-C **
28744089-G-A 26597942-G-A FT421400 **
28747853-A-C 26601706-A-C **
28774807-C-A 26628660-C-A **
28818507-G-A 26672360-G-A **
28818915-A-T 26672768-A-T **
56822379-A-C **
56849755-C-T **
56850967-A-T **
56857414-G-T **
13349016-A-G 11193340-A-G FGC48916 **
13349045-T-G 11193369-T-G **
13349080-A-G 11193404-A-G **
20951195-T-TC 18789309-T-TC P4_Dst **
13349064-A-T 11193388-A-T **
19696445-A-G 17584565-A-G P5_Prx **
13349014-G-T 11193338-G-T **
13349017-G-T 11193341-G-T **
13349042-T-C 11193366-T-C **
13481400-G-T 11325724-G-T **
27848726-A-C 25702579-A-C P1_Y2 **
27848728-T-TCAGA 25702581-T-TCAGA P1_Y2 **
27848736-T-A 25702589-T-A P1_Y2 **
3999270-T-C 4131229-T-C **
4437786-C-G 4569745-C-G **
5180549-AT-A 5312508-AT-A **
5223279-G-T 5355238-G-T **
5437353-T-C 5569312-T-C **
5704240-G-A 5836199-G-A **
5704246-T-C 5836205-T-C **
6163516-G-T 6295475-G-T IR3_Dst **
7132514-T-C 7264473-T-C **
8739160-T-C 8871119-T-C **
14162289-T-A 12041583-T-A **
15921708-T-C 13809828-T-C **
18966915-GC-G 16855035-GC-G **
19667735-A-ATC 17555855-A-ATC P5_Prx **
21091049-A-T 18929163-A-T **
24373482-C-T 22227335-C-T **
27914654-CT-C 25768507-CT-C P1_Y2 **
2813410-CT-C 2945369-CT-C 10×T***
18637295-AT-A 16525415-AT-A 10×T***
9770513-G-GA 9932904-G-GA 9×A***
13705785-G-A 11550109-G-A DYZ17 ***
16482279-ATG-A 14370399-ATG-A ***
2852900-AAAAT-A 2984859-AAAAT-A 6×AAAT***
23127414-CAAAAAAA-C 20965528-CAAAAAAA-C 24×A***
7075240-CAAAA-C 7207199-CAAAA-C 17×A***
19261128-C-CTT 17149248-C-CTT 21×T***
11643796-A-T DYZ17 ***
14771649-CTT-C,CT 12659718-CTT-C,CT 17×T***
10770669-A-C ***
10926673-C-T ***
13480319-G-A 11324643-G-A ***
22128527-CT-C 19966641-CT-C 9×T***
21558722-CAAA-C 19396836-CAAA-C 16×A***
21495310-C-A 19333424-C-A ***
10770667-C-A ***
10770698-C-T ***
10958311-CTCCAT-C ***
10999885-A-G ***
10954318-C-T ***
14096618-TAAA-T 11975912-TAAA-T 17×A***
21885321-TA-T 19723435-TA-T 10×A***
13898782-A-T 11778076-A-T ***
19333229-ATTTT-A,ATTT 17221349-ATTTT-A,ATTT 21×T***
8428944-CAAAAA-C 8560903-CAAAAA-C 25×A***
10661353-A-ATCCCT ***
10764607-T-C ***
9008606-AT-A 9170997-AT-A 10×T***
22325422-C-A 20163536-C-A DYZ19 ***
10987776-T-A ***
10991207-CTCCAT-C ***
21954253-CT-C 19792367-CT-C 9×T***
3122823-C-A 3254782-C-A ***
5073600-C-T 5205559-C-T ***
6403595-C-T 6535554-C-T ***
6403645-A-G 6535604-A-G ***
10694119-C-A ***
10782978-C-A ***
10926679-G-A,T ***
10979603-C-G,T ***
11007434-C-A ***
11007440-C-T ***
13601947-C-A 11446271-C-A ***
13643735-T-C 11488059-T-C ***
13707496-C-A 11551820-C-A DYZ17 ***
13707554-A-G 11551878-A-G DYZ17 ***
13707569-A-C 11551893-A-C DYZ17 ***
14272703-AC-A 12151997-AC-A ***
14639572-T-C 12527641-T-C ***
15056874-T-C 12944966-T-C ***
16084090-T-C 13972210-T-C ***
16545628-ATTT-A 14433748-ATTT-A 15×T***
16631750-CT-C,CTT 14519870-CT-C,CTT 14×T***
18384490-CAAAAAA-C 16272610-CAAAAAA-C P6_Gap 19×A***
21140854-CTTT-C 18978968-CTTT-C 15×T***
22652656-C-A 20490770-C-A ***
23854856-G-T 21692970-G-T ***
56734824-G-T ***
14097778-TTTA-T 11977072-TTTA-T 7×TTA***
13481335-A-T 11325659-A-T ***
13481338-C-T 11325662-C-T ***
6052859-C-CT 6184818-C-CT 11×T***
13455898-TCATTCCATTC-T,TCATTC 11300222-TCATTCCATTC-T,TCATTC 10×CATTC***
22517592-G-GA 20355706-G-GA 9×A***
28503399-CAAAA-C 26357252-CAAAA-C 19×A***
18060236-G-A 15948356-G-A ***
2900366-C-T 3032325-C-T ***
3205858-C-CAA 3337817-C-CAA 15×A***
3461944-T-C 3593903-T-C ***
3930083-CTT-C 4062042-CTT-C 12×T***
4134484-CAA-C,CA 4266443-CAA-C,CA 18×A***
4880709-GTTTT-G,GTTT 5012668-GTTTT-G,GTTT 22×T***
5945467-CTTTTTT-C,CTTTTT 6077426-CTTTTTT-C,CTTTTT 25×T***
6100552-T-TAA 6232511-T-TAA 15×A***
7136245-CAA-C,CAAA 7268204-CAA-C,CAAA 14×A***
7257470-A-G 7389429-A-G ***
8600008-TC-T,TT 8731967-TC-T,TT ***
9888690-A-G 10051081-A-G ***
13362057-A-G 11206381-A-G ***
13411506-A-G 11255830-A-G ***
13538220-G-T 11382544-G-T ***
13598793-A-T 11443117-A-T ***
16199702-C-T 14087822-C-T ***
16945499-G-A 14833619-G-A ***
16999757-T-C 14887877-T-C ***
17086956-A-G 14975076-A-G ***
17643758-G-A 15531878-G-A ***
17779196-A-G 15667316-A-G ***
18762039-T-C 16650159-T-C ***
18997454-A-T 16885574-A-T ***
21096843-C-G 18934957-C-G ***
21482762-CTTTTT-C,CTTTT 19320876-CTTTTT-C,CTTTT 19×T***
21988860-A-G 19826974-A-G ***
22446014-T-A 20284128-T-A DYZ19 ***
22543938-A-T 20382052-A-T ***
23504996-A-G 21343110-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.