Ruth
BigY2: 700287Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 700287 |
---|---|---|---|---|---|---|---|---|
20747156-T-A | 18585270-T-A | P4_Prx | A* | |||||
28817728-C-A | 26671581-C-A | A* | ||||||
13451846-G-C | 11296170-G-C | A* | ||||||
20641143-T-C | 18479257-T-C | P4_Prx | A* | |||||
22475514-G-A | 20313628-G-A | BY43993 | DYZ19 | + | ||||
7473156-A-G | 7605115-A-G | BY65463 | IR1_L | + | ||||
8966237-T-C | 9128628-T-C | BY76932 | + | |||||
10007375-C-T | 10169766-C-T | BY82772 | Y | + | ||||
16950248-C-T | 14838368-C-T | BY111337 | Y | Y | + | |||
22446015-C-A | 20284129-C-A | BY52695 | DYZ19 | + | ||||
12452-A-T | + | |||||||
22346882-A-C | 20184996-A-C | DYZ19 | ** | |||||
22346883-G-T | 20184997-G-T | DYZ19 | ** | |||||
3544322-A-G | 3676281-A-G | ** | ||||||
8462064-C-CA | 8594023-C-CA | 26×A | ** | |||||
23013710-T-C | 20851824-T-C | ** | ||||||
13461074-T-G | 11305398-T-G | ** | ||||||
17355539-C-A | 15243659-C-A | ** | ||||||
15288804-C-A | 13176903-C-A | ** | ||||||
10763351-ACTCCA-G | ** | |||||||
8746331-C-A | 8878290-C-A | ** | ||||||
9511485-G-T | 9673876-G-T | ** | ||||||
10924332-C-A | ** | |||||||
10973800-G-T | ** | |||||||
10845721-C-G | ** | |||||||
11036026-AT-A | ** | |||||||
28536313-C-A | 26390166-C-A | ** | ||||||
13305516-C-A | 11149840-C-A | ** | ||||||
10803095-A-C | ** | |||||||
21416622-C-A | 19254736-C-A | ** | ||||||
10760312-T-C | ** | |||||||
10866316-C-G | ** | |||||||
7127341-C-A | 7259300-C-A | FT253314 | ** | |||||
10939059-T-C | ** | |||||||
5829871-C-A | 5961830-C-A | ** | ||||||
7990632-CT-C | 8122591-CT-C | 8×T | ** | |||||
10810887-G-A | ** | |||||||
16429797-G-T | 14317917-G-T | ** | ||||||
10775760-A-T | ** | |||||||
10775776-C-G | ** | |||||||
10775810-T-G | ** | |||||||
10775813-A-G | ** | |||||||
6992594-C-A | 7124553-C-A | ** | ||||||
15622702-C-A | 13510822-C-A | ** | ||||||
19600592-G-T | 17488712-G-T | P5_Prx | ** | |||||
11033780-T-C | ** | |||||||
6273855-CA-C | 6405814-CA-C | IR3_Dst | ** | |||||
5785688-G-T | 5917647-G-T | ** | ||||||
4123798-C-A | 4255757-C-A | ** | ||||||
10984003-TC-T | ** | |||||||
19575831-G-T | 17463951-G-T | P5_Prx | ** | |||||
11643673-G-T | ** | |||||||
21324245-G-T | 19162359-G-T | ** | ||||||
11020804-C-A | ** | |||||||
11650471-G-C | ** | |||||||
10946010-C-A | FT437694 | ** | ||||||
21495036-TA-T | 19333150-TA-T | 8×A | ** | |||||
24631265-TG-T | 22485118-TG-T | P3_t2 | ** | |||||
10924289-T-C | ** | |||||||
10924293-A-T | ** | |||||||
10785277-C-T | ** | |||||||
11018173-C-A | ** | |||||||
11018180-C-T | ** | |||||||
11018187-G-C | ** | |||||||
11018201-C-T | ** | |||||||
11018210-A-C | ** | |||||||
11018217-C-T | ** | |||||||
10971933-A-G | ** | |||||||
10971957-C-T | ** | |||||||
14823628-A-T | 12711695-A-T | ** | ||||||
18390066-C-A | 16278186-C-A | P6_Gap | ** | |||||
18480378-C-A | 16368498-C-A | P6_Dst | ** | |||||
27862657-G-T | 25716510-G-T | P1_Y2 | ** | |||||
14354509-C-A | 12233804-C-A | ** | ||||||
17914218-GTATATATA-G | 15802338-GTATATATA-G | 15×TA | ** | |||||
28806479-G-C | 26660332-G-C | ** | ||||||
10691344-CTCCATTCCATTCCATTCCATTCCATTCCAT-C | ** | |||||||
10663826-C-A | ** | |||||||
19539762-T-G | 17427882-T-G | ** | ||||||
2701153-T-G | 2833112-T-G | ** | ||||||
10924348-A-T | ** | |||||||
10815320-G-A | ** | |||||||
22563016-C-A | 20401130-C-A | ** | ||||||
10932952-C-T | ** | |||||||
10932980-C-A | ** | |||||||
10932984-G-C | ** | |||||||
10880319-A-T | ** | |||||||
4416660-C-G | 4548619-C-G | ** | ||||||
10803076-T-C | ** | |||||||
10997660-G-T | ** | |||||||
23127946-C-A | 20966060-C-A | ** | ||||||
10975917-T-A | ** | |||||||
10975956-G-C | ** | |||||||
10932934-C-CCACAA | ** | |||||||
10932945-A-T | ** | |||||||
13720583-G-T | 11564907-G-T | ** | ||||||
22010292-C-A | 19848406-C-A | ** | ||||||
3492192-C-A | 3624151-C-A | ** | ||||||
10912610-C-A | ** | |||||||
9953323-C-A | 10115714-C-A | ** | ||||||
8279896-C-A | 8411855-C-A | ** | ||||||
10924339-C-G | ** | |||||||
10942714-T-C | ** | |||||||
7650501-C-A | 7782460-C-A | ** | ||||||
10974770-TTCCAC-T | ** | |||||||
18085368-C-A | 15973488-C-A | ** | ||||||
27596084-C-A | 25449937-C-A | P1_Y2 | ** | |||||
10775794-A-C | ** | |||||||
10778027-C-A | ** | |||||||
23345945-C-A | 21184059-C-A | ** | ||||||
10772530-C-A | ** | |||||||
10964249-T-G | ** | |||||||
13922430-C-A | 11801724-C-A | ** | ||||||
28818181-G-T | 26672034-G-T | ** | ||||||
10955263-C-T | ** | |||||||
10932922-T-A | ** | |||||||
10652844-C-A | ** | |||||||
10879132-T-A | ** | |||||||
6233703-G-T | 6365662-G-T | IR3_Dst | ** | |||||
21874853-C-A | 19712967-C-A | ** | ||||||
6106084-T-A | 6238043-T-A | ** | ||||||
2684559-T-A | 2816518-T-A | ** | ||||||
2689596-T-G | 2821555-T-G | ** | ||||||
2718988-C-G | 2850947-C-G | ** | ||||||
2718996-T-A | 2850955-T-A | ** | ||||||
2719003-G-A | 2850962-G-A | ** | ||||||
2803511-C-A | 2935470-C-A | ** | ||||||
2932038-T-C | 3063997-T-C | ** | ||||||
3011556-C-A | 3143515-C-A | ** | ||||||
3051218-G-T | 3183177-G-T | ** | ||||||
3051258-A-C | 3183217-A-C | ** | ||||||
3099202-G-T | 3231161-G-T | ** | ||||||
3346198-C-A | 3478157-C-A | ** | ||||||
3492703-C-A | 3624662-C-A | ** | ||||||
3599052-A-G | 3731011-A-G | ** | ||||||
3732662-C-A | 3864621-C-A | ** | ||||||
3759355-G-A | 3891314-G-A | ** | ||||||
3930575-A-T | 4062534-A-T | ** | ||||||
3930627-A-T | 4062586-A-T | ** | ||||||
4215686-C-A | 4347645-C-A | ** | ||||||
4215796-C-A | 4347755-C-A | ** | ||||||
4416650-C-T | 4548609-C-T | ** | ||||||
4416655-G-A | 4548614-G-A | ** | ||||||
4507069-C-A | 4639028-C-A | ** | ||||||
4605124-C-A | 4737083-C-A | ** | ||||||
4787965-T-A | 4919924-T-A | ** | ||||||
4795071-G-T | 4927030-G-T | ** | ||||||
5317540-T-A | 5449499-T-A | ** | ||||||
5351709-T-A | 5483668-T-A | ** | ||||||
5443450-C-A | 5575409-C-A | ** | ||||||
5675533-G-T | 5807492-G-T | ** | ||||||
5775700-A-T | 5907659-A-T | ** | ||||||
5824296-T-A | 5956255-T-A | ** | ||||||
5845172-T-A | 5977131-T-A | ** | ||||||
5911841-G-T | 6043800-G-T | ** | ||||||
5990522-G-T | 6122481-G-T | ** | ||||||
6012763-C-A | 6144722-C-A | ** | ||||||
6233538-C-A | 6365497-C-A | IR3_Dst | ** | |||||
6233685-T-A | 6365644-T-A | IR3_Dst | ** | |||||
6233709-T-A | 6365668-T-A | IR3_Dst | ** | |||||
6233713-T-A | 6365672-T-A | IR3_Dst | ** | |||||
6233726-T-A | 6365685-T-A | IR3_Dst | 13×CA | ** | ||||
6267715-A-C | 6399674-A-C | IR3_Dst | ** | |||||
6267721-A-C | 6399680-A-C | IR3_Dst | ** | |||||
6384497-T-A | 6516456-T-A | ** | ||||||
6457825-A-C | 6589784-A-C | ** | ||||||
6505519-T-G | 6637478-T-G | ** | ||||||
6688410-C-T | 6820369-C-T | ** | ||||||
6770853-T-C | 6902812-T-C | ** | ||||||
6773816-T-G | 6905775-T-G | ** | ||||||
6978251-C-A | 7110210-C-A | ** | ||||||
7012597-C-A | 7144556-C-A | ** | ||||||
7225738-T-G | 7357697-T-G | ** | ||||||
7225770-A-T | 7357729-A-T | 11×TG | ** | |||||
7228500-A-C | 7360459-A-C | ** | ||||||
7235848-T-A | 7367807-T-A | ** | ||||||
7239608-T-G | 7371567-T-G | ** | ||||||
7241163-C-A | 7373122-C-A | ** | ||||||
7250333-C-A | 7382292-C-A | ** | ||||||
7294184-C-A | 7426143-C-A | ** | ||||||
7391147-C-A | 7523106-C-A | ** | ||||||
7430530-A-G | 7562489-A-G | ** | ||||||
7443947-G-T | 7575906-G-T | ** | ||||||
8013285-T-A | 8145244-T-A | ** | ||||||
8016018-C-A | 8147977-C-A | ** | ||||||
8030126-T-C | 8162085-T-C | ** | ||||||
8074034-A-C | 8205993-A-C | ** | ||||||
8126303-TA-T | 8258262-TA-T | ** | ||||||
8269707-T-G | 8401666-T-G | FTB45126 | ** | |||||
8333700-T-G | 8465659-T-G | ** | ||||||
8344040-T-C | 8475999-T-C | ** | ||||||
8723715-G-T | 8855674-G-T | ** | ||||||
8723718-A-T | 8855677-A-T | ** | ||||||
8746342-A-C | 8878301-A-C | ** | ||||||
8835214-T-A | 8967173-T-A | ** | ||||||
8835219-T-A | 8967178-T-A | ** | ||||||
8913412-G-T | 9045371-G-T | ** | ||||||
9119159-G-T | ** | |||||||
8974932-G-GAA | 9137323-G-GAA | 12×A | ** | |||||
8988568-C-A | 9150959-C-A | ** | ||||||
9117168-A-G | 9279559-A-G | ** | ||||||
9172902-A-C | 9335293-A-C | ** | ||||||
9421422-T-C | 9583813-T-C | ** | ||||||
9522081-T-C | 9684472-T-C | ** | ||||||
9617502-T-TA | 9779893-T-TA | IR3_Prx | ** | |||||
9654198-T-A | 9816589-T-A | IR3_Prx | ** | |||||
9754430-G-T | 9916821-G-T | ** | ||||||
9765847-A-C | 9928238-A-C | ** | ||||||
9849767-G-T | 10012158-G-T | ** | ||||||
9941404-C-A | 10103795-C-A | ** | ||||||
9963347-A-G | 10125738-A-G | ** | ||||||
9965036-T-C | 10127427-T-C | ** | ||||||
9965221-G-T | 10127612-G-T | ** | ||||||
10624965-C-A | ** | |||||||
10627967-C-A | ** | |||||||
10665425-C-A | ** | |||||||
10672961-G-T | ** | |||||||
10678650-T-A | ** | |||||||
10683036-A-T | ** | |||||||
10688189-C-A | ** | |||||||
10688201-A-T | ** | |||||||
10692518-T-G | ** | |||||||
10692538-A-G | ** | |||||||
10692539-T-C | ** | |||||||
10692559-T-C | ** | |||||||
10754097-T-G | ** | |||||||
10767536-G-T | ** | |||||||
10775752-A-C | ** | |||||||
10775758-C-G | ** | |||||||
10775764-T-C | ** | |||||||
10775772-T-A | ** | |||||||
10775793-A-T | ** | |||||||
10775801-G-T | ** | |||||||
10775814-C-A | ** | |||||||
10775816-A-G | ** | |||||||
10778934-T-C | ** | |||||||
10785170-C-A | ** | |||||||
10786947-C-A | ** | |||||||
10792763-C-CGGAAG | ** | |||||||
10792777-C-G | ** | |||||||
10793007-T-C | ** | |||||||
10795449-C-A | ** | |||||||
10797269-T-G | ** | |||||||
10803070-C-A | ** | |||||||
10803080-C-G | ** | |||||||
10803083-C-T | ** | |||||||
10803098-A-G | ** | |||||||
10804238-G-T | ** | |||||||
10805009-C-A | ** | |||||||
10810878-C-A | ** | |||||||
10810905-T-C | ** | |||||||
10810914-TC-T | ** | |||||||
10810921-C-CG | ** | |||||||
10810926-CATTCA-C | ** | |||||||
10810948-T-C | ** | |||||||
10810953-T-C | ** | |||||||
10810953-TTCCGTTAAAA-T | ** | |||||||
10810981-CATTCCTTAA-C | ** | |||||||
10811017-C-T | ** | |||||||
10812664-C-A | ** | |||||||
10817797-T-C | ** | |||||||
10820386-C-CTCTAT | ** | |||||||
10829123-C-A | ** | |||||||
10832182-A-C | ** | |||||||
10845241-T-G | ** | |||||||
10845695-C-CGAATA | ** | |||||||
10845707-CTTCCA-C | ** | |||||||
10866026-C-A | ** | |||||||
10866301-GAA-G | ** | |||||||
10866307-C-T | ** | |||||||
10866319-G-T | ** | |||||||
10868429-C-A | FT434794 | ** | ||||||
10870895-ACCACT-A | ** | |||||||
10879108-T-A | ** | |||||||
10879123-C-A | ** | |||||||
10880745-T-G | ** | |||||||
10881932-T-C | ** | |||||||
10882616-C-A | ** | |||||||
10885627-G-T | FT425909 | ** | ||||||
10888208-A-C | ** | |||||||
10888250-T-G | ** | |||||||
10892746-A-T | ** | |||||||
10898336-A-C | ** | |||||||
10898344-A-C | ** | |||||||
10898880-C-A | ** | |||||||
10902350-C-A | ** | |||||||
10912267-C-T | ** | |||||||
10914406-A-T | ** | |||||||
10921639-T-A | ** | |||||||
10924308-A-C | ** | |||||||
10924338-A-T | ** | |||||||
10924672-GCATTGCATTCTATTC-G | ** | |||||||
10927075-T-G | FT436819 | ** | ||||||
10929544-C-A | ** | |||||||
10934063-C-A | ** | |||||||
10934383-C-A | ** | |||||||
10935374-C-A | ** | |||||||
10941476-C-A | ** | |||||||
10941479-C-T | ** | |||||||
10945075-C-A | ** | |||||||
10948763-T-G | ** | |||||||
10948777-T-A | ** | |||||||
10948778-T-A | ** | |||||||
10948781-G-C | ** | |||||||
10948782-T-A | ** | |||||||
10948783-T-G | ** | |||||||
10952705-C-A | ** | |||||||
10952722-T-G | ** | |||||||
10955260-C-G | ** | |||||||
10955274-T-TTAA | ** | |||||||
10955277-A-ACC | ** | |||||||
10955287-A-ATCCC | ** | |||||||
10955295-C-G | ** | |||||||
10956293-T-A | ** | |||||||
10956301-C-A | ** | |||||||
10956318-G-C | ** | |||||||
10956321-T-A | ** | |||||||
10958249-C-A | ** | |||||||
10964219-T-A | ** | |||||||
10964819-CTGGACTCCAT-C | ** | |||||||
10965294-G-T | ** | |||||||
10974774-A-C | ** | |||||||
10975616-C-A | ** | |||||||
10975693-T-G | ** | |||||||
10975911-T-C | ** | |||||||
10975912-C-A | ** | |||||||
10975936-A-AC | ** | |||||||
10975948-A-C | ** | |||||||
10977112-C-A | ** | |||||||
10977701-T-G | ** | |||||||
10986406-C-T | ** | |||||||
10986422-T-C | ** | |||||||
10986428-C-A | ** | |||||||
10986568-C-A | ** | |||||||
10991437-C-A | ** | |||||||
10991837-T-A | ** | |||||||
10994348-A-T | ** | |||||||
10994362-C-A | ** | |||||||
11017534-C-A | ** | |||||||
11020786-T-A | ** | |||||||
11020796-A-G | ** | |||||||
11020797-T-C | ** | |||||||
11020818-T-A | ** | |||||||
11020820-C-A | ** | |||||||
11021717-G-T | ** | |||||||
13213651-A-C | 11057975-A-C | ** | ||||||
13217569-C-A | 11061893-C-A | ** | ||||||
13236639-G-T | 11080963-G-T | ** | ||||||
13325959-A-T | 11170283-A-T | ** | ||||||
13327779-G-A | 11172103-G-A | ** | ||||||
13406374-A-G | 11250698-A-G | ** | ||||||
13460622-T-A | 11304946-T-A | ** | ||||||
13461004-C-A | 11305328-C-A | ** | ||||||
13469041-G-A | 11313365-G-A | ** | ||||||
13472206-A-G | 11316530-A-G | ** | ||||||
13566081-A-C | 11410405-A-C | ** | ||||||
13585148-C-A | 11429472-C-A | ** | ||||||
13594501-A-T | 11438825-A-T | ** | ||||||
13612011-A-T | 11456335-A-T | ** | ||||||
13720599-T-G | 11564923-T-G | ** | ||||||
11645282-C-A | ** | |||||||
11646255-A-T | ** | |||||||
11662196-T-A | ** | |||||||
11666024-C-A | ** | |||||||
13870627-C-A | 11749921-C-A | ** | ||||||
13973086-A-C | 11852380-A-C | ** | ||||||
14107615-C-A | 11986909-C-A | ** | ||||||
14181527-A-C | 12060821-A-C | ** | ||||||
14184460-T-C | 12063754-T-C | ** | ||||||
14367684-C-A | 12246980-C-A | ** | ||||||
14390089-C-A | 12269385-C-A | ** | ||||||
14396596-C-A | 12275892-C-A | ** | ||||||
14446651-C-A | 12325924-C-A | ** | ||||||
14461152-C-T | 12340425-C-T | ** | ||||||
14474638-C-A | 12353907-C-A | ** | ||||||
14495692-C-A | 12383889-C-A | ** | ||||||
14557556-G-T | 12445757-G-T | ** | ||||||
14658206-T-C | 12546271-T-C | ** | ||||||
14741705-C-A | 12629773-C-A | ** | ||||||
14933861-C-A | 12821926-C-A | ** | ||||||
15059683-A-C | 12947775-A-C | ** | ||||||
15070533-T-A | 12958624-T-A | ** | ||||||
15115416-T-G | 13003503-T-G | ** | ||||||
15116561-A-G | 13004648-A-G | ** | ||||||
15116583-GGT-G | 13004670-GGT-G | ** | ||||||
15116587-C-CA | 13004674-C-CA | ** | ||||||
15116590-G-A | 13004677-G-A | ** | ||||||
15131878-C-A | 13019965-C-A | ** | ||||||
15182986-A-T | 13071072-A-T | ** | ||||||
15182987-A-T | 13071073-A-T | ** | ||||||
15209340-C-A | 13097426-C-A | ** | ||||||
15288680-C-A | 13176779-C-A | ** | ||||||
15362003-C-A | 13250123-C-A | ** | ||||||
15394277-T-G | 13282397-T-G | ** | ||||||
15403520-C-A | 13291640-C-A | ** | ||||||
15650549-T-G | 13538669-T-G | ** | ||||||
15688463-G-A | 13576583-G-A | ** | ||||||
15741741-C-A | 13629861-C-A | ** | ||||||
15746370-T-C | 13634490-T-C | ** | ||||||
15916342-C-A | 13804462-C-A | ** | ||||||
15952411-C-A | 13840531-C-A | ** | ||||||
16034516-G-T | 13922636-G-T | ** | ||||||
16062157-C-A | 13950277-C-A | FT271247 | ** | |||||
16083977-T-C | 13972097-T-C | ** | ||||||
16320437-A-T | 14208557-A-T | ** | ||||||
16594435-T-A | 14482555-T-A | ** | ||||||
16625814-C-A | 14513934-C-A | ** | ||||||
16667168-C-A | 14555288-C-A | ** | ||||||
16704897-C-A | 14593017-C-A | ** | ||||||
16942019-C-G | 14830139-C-G | ** | ||||||
17086635-AT-A | 14974755-AT-A | ** | ||||||
17185228-C-A | 15073348-C-A | ** | ||||||
17201757-C-A | 15089877-C-A | ** | ||||||
17441203-TATATATATATATAC-T | 15329323-TATATATATATATAC-T | ** | ||||||
17466930-A-T | 15355050-A-T | ** | ||||||
17492929-A-G | 15381049-A-G | ** | ||||||
17527438-GTATATATATATATATA-G | 15415558-GTATATATATATATATA-G | 18×TA | ** | |||||
17550692-C-T | 15438812-C-T | Y137732 | ** | |||||
17597139-A-G | 15485259-A-G | ** | ||||||
17597161-T-A | 15485281-T-A | ** | ||||||
17622754-CC-A | 15510874-CC-A | ** | ||||||
17714766-C-A | 15602886-C-A | ** | ||||||
17946898-C-G | 15835018-C-G | ** | ||||||
18020739-A-G | 15908859-A-G | ** | ||||||
18186938-C-T | 16075058-C-T | FT288569 | ** | |||||
18201979-A-G | 16090099-A-G | ** | ||||||
18369798-G-T | 16257918-G-T | P6_Prx | ** | |||||
18369826-A-T | 16257946-A-T | P6_Prx | ** | |||||
18378982-T-G | 16267102-T-G | P6_Prx | ** | |||||
18378997-T-G | 16267117-T-G | P6_Prx | ** | |||||
18661568-C-G | 16549688-C-G | ** | ||||||
18730939-C-A | 16619059-C-A | ** | ||||||
18812254-T-G | 16700374-T-G | ** | ||||||
18898870-A-G | 16786990-A-G | ** | ||||||
18930057-G-T | 16818177-G-T | ** | ||||||
18937321-C-A | 16825441-C-A | ** | ||||||
18986839-C-A | 16874959-C-A | ** | ||||||
18997467-C-A | 16885587-C-A | ** | ||||||
19043815-C-A | 16931935-C-A | ** | ||||||
19138768-T-G | 17026888-T-G | ** | ||||||
19206931-AT-A | 17095051-AT-A | ** | ||||||
19245615-G-T | 17133735-G-T | ** | ||||||
19271535-A-T | 17159655-A-T | ** | ||||||
19310227-C-A | 17198347-C-A | ** | ||||||
19461967-G-T | 17350087-G-T | ** | ||||||
19580591-A-T | 17468711-A-T | P5_Prx | ** | |||||
19580605-A-T | 17468725-A-T | P5_Prx | ** | |||||
19580622-A-T | 17468742-A-T | P5_Prx | ** | |||||
19580631-A-T | 17468751-A-T | P5_Prx | ** | |||||
19580643-G-T | 17468763-G-T | P5_Prx | ** | |||||
19600508-G-A | 17488628-G-A | P5_Prx | ** | |||||
19600509-G-T | 17488629-G-T | P5_Prx | ** | |||||
19600525-G-A | 17488645-G-A | P5_Prx | ** | |||||
19600526-G-T | 17488646-G-T | P5_Prx | ** | |||||
19600538-G-A | 17488658-G-A | P5_Prx | ** | |||||
19600584-A-T | 17488704-A-T | P5_Prx | ** | |||||
19600602-A-T | 17488722-A-T | P5_Prx | ** | |||||
19619935-G-T | 17508055-G-T | P5_Prx | ** | |||||
19619953-C-A | 17508073-C-A | P5_Prx | ** | |||||
19965677-T-C | 17853797-T-C | P5_Prx | ** | |||||
19965693-G-T | 17853813-G-T | P5_Prx | ** | |||||
20216585-G-T | 18054699-G-T | P5_Dst | ** | |||||
20440397-T-TGTC | 18278511-T-TGTC | P5_Dst | ** | |||||
20452371-G-T | 18290485-G-T | P5_Dst | ** | |||||
20452372-A-T | 18290486-A-T | P5_Dst | ** | |||||
20496883-A-C | 18334997-A-C | P5_Dst | ** | |||||
20496911-A-C | 18335025-A-C | P5_Dst | ** | |||||
20569476-G-T | 18407590-G-T | P5_Dst | ** | |||||
20865564-G-T | 18703678-G-T | P4_Dst | ** | |||||
20978386-CA-C | 18816500-CA-C | P4_Dst | ** | |||||
21037332-T-A | 18875446-T-A | ** | ||||||
21092191-C-A | 18930305-C-A | 18×T | ** | |||||
21109849-A-T | 18947963-A-T | ** | ||||||
21138673-G-T | 18976787-G-T | ** | ||||||
21185073-A-T | 19023187-A-T | ** | ||||||
21187338-C-A | 19025452-C-A | ** | ||||||
21354096-C-A | 19192210-C-A | ** | ||||||
21382067-C-A | 19220181-C-A | ** | ||||||
21455436-A-T | 19293550-A-T | ** | ||||||
21561701-C-A | 19399815-C-A | ** | ||||||
21589527-C-G | 19427641-C-G | ** | ||||||
21614694-C-A | 19452808-C-A | ** | ||||||
21697192-T-C | 19535306-T-C | ** | ||||||
21856659-C-A | 19694773-C-A | ** | ||||||
21959160-T-G | 19797274-T-G | ** | ||||||
22172900-C-A | 20011014-C-A | ** | ||||||
22265318-A-T | 20103432-A-T | DYZ19 | ** | |||||
22265393-G-T | 20103507-G-T | DYZ19 | ** | |||||
22265400-G-T | 20103514-G-T | DYZ19 | ** | |||||
22300712-T-TA | 20138826-T-TA | DYZ19 | ** | |||||
22340078-A-C | 20178192-A-C | DYZ19 | ** | |||||
22346871-A-T | 20184985-A-T | DYZ19 | ** | |||||
22346876-T-G | 20184990-T-G | DYZ19 | ** | |||||
22590451-A-C | 20428565-A-C | ** | ||||||
22598822-T-A | 20436936-T-A | ** | ||||||
22662043-C-A | 20500157-C-A | ** | ||||||
22881355-A-G | 20719469-A-G | ** | ||||||
22881360-A-C | 20719474-A-C | ** | ||||||
22881367-A-G | 20719481-A-G | ** | ||||||
22881370-C-T | 20719484-C-T | FT155228 | ** | |||||
22965028-C-A | 20803142-C-A | ** | ||||||
23013721-T-C | 20851835-T-C | ** | ||||||
23029942-T-G | 20868056-T-G | ** | ||||||
23145388-C-A | 20983502-C-A | ** | ||||||
23276521-G-A | 21114635-G-A | ** | ||||||
23291208-A-C | 21129322-A-C | ** | ||||||
23368700-C-A | 21206814-C-A | ** | ||||||
23401415-C-A | 21239529-C-A | ** | ||||||
23419254-C-A | 21257368-C-A | ** | ||||||
23447566-C-A | 21285680-C-A | ** | ||||||
23455005-G-T | 21293119-G-T | ** | ||||||
23623404-A-G | 21461518-A-G | ** | ||||||
24577923-G-C | 22431776-G-C | P3_t2 | ** | |||||
25646992-A-T | 23500845-A-T | P1_b3 | ** | |||||
25955926-G-T | 23809779-G-T | P1_Y1 | ** | |||||
25958016-G-T | 23811869-G-T | P1_Y1 | ** | |||||
26166971-A-T | 24020824-A-T | P1_Y1 | ** | |||||
26166991-C-G | 24020844-C-G | P1_Y1 | ** | |||||
26166993-C-A | 24020846-C-A | P1_Y1 | ** | |||||
26167002-A-T | 24020855-A-T | P1_Y1 | ** | |||||
26167004-G-T | 24020857-G-T | P1_Y1 | ** | |||||
26167007-A-T | 24020860-A-T | P1_Y1 | ** | |||||
26167020-A-T | 24020873-A-T | P1_Y1 | ** | |||||
26167028-G-T | 24020881-G-T | P1_Y1 | ** | |||||
26167041-C-A | 24020894-C-A | P1_Y1 | ** | |||||
26320845-G-T | 24174698-G-T | P1_Y1 | ** | |||||
26352355-G-T | 24206208-G-T | P1_Y1 | ** | |||||
27915045-G-T | 25768898-G-T | P1_Y2 | ** | |||||
28468518-C-T | 26322371-C-T | ** | ||||||
28531373-G-T | 26385226-G-T | ** | ||||||
28532008-C-A | 26385861-C-A | ** | ||||||
28536280-G-C | 26390133-G-C | ** | ||||||
28561592-C-A | 26415445-C-A | ** | ||||||
28608281-C-A | 26462134-C-A | ** | ||||||
28612290-A-C | 26466143-A-C | ** | ||||||
28614237-T-G | 26468090-T-G | ** | ||||||
28773581-C-A | 26627434-C-A | ** | ||||||
28806451-G-C | 26660304-G-C | ** | ||||||
28806462-T-A | 26660315-T-A | ** | ||||||
56843965-G-T | ** | |||||||
56849706-G-T | ** | |||||||
30210-C-A | ** | |||||||
58975595-T-C | 56829448-T-C | *** | ||||||
58827354-C-G | 56763517-G-C | *** | ||||||
23544835-G-GT | 21382949-G-GT | 10×T | *** | |||||
7986294-G-T | 8118253-G-T | *** | ||||||
10682554-T-G | *** | |||||||
10885167-GA-CA,G | *** | |||||||
10691045-T-C | *** | |||||||
13487739-T-C | 11332063-T-C | *** | ||||||
56850704-C-A | *** | |||||||
7947899-C-A | 8079858-C-A | *** | ||||||
10987231-C-A | *** | |||||||
11643683-G-A | *** | |||||||
13488927-T-C | 11333251-T-C | *** | ||||||
13811171-A-T | 11690465-A-T | *** | ||||||
56830363-T-CACTCC | *** | |||||||
21924132-ATT-A | 19762246-ATT-A | 13×T | *** | |||||
23281361-AT-A,ATT | 21119475-AT-A,ATT | 14×T | *** | |||||
17755384-TAAA-T | 15643504-TAAA-T | 17×A | *** | |||||
13471966-C-A | 11316290-C-A | *** | ||||||
13471970-A-C | 11316294-A-C | *** | ||||||
10760367-C-A,T | *** | |||||||
13811202-T-A | 11690496-T-A | *** | ||||||
13453408-C-T | 11297732-C-T | *** | ||||||
13453409-C-A | 11297733-C-A | *** | ||||||
13453409-C-CA | 11297733-C-CA | *** | ||||||
10746968-A-G | *** | |||||||
15588715-CAA-C,CAAA | 13476835-CAA-C,CAAA | 14×A | *** | |||||
10757701-G-T | FT429873 | *** | ||||||
7356339-T-C | 7488298-T-C | *** | ||||||
15859437-CTT-C,CTTT | 13747557-CTT-C,CTTT | 17×T | *** | |||||
3833652-CAA-C,CA | 3965611-CAA-C,CA | 16×A | *** | |||||
6672161-C-A | 6804120-C-A | *** | ||||||
6957062-C-A | 7089021-C-A | *** | ||||||
7083172-C-A | 7215131-C-A | *** | ||||||
7269610-CTTTT-C,CTTTTT | 7401569-CTTTT-C,CTTTTT | 22×T | *** | |||||
7976622-A-G | 8108581-A-G | *** | ||||||
8144898-G-T | 8276857-G-T | *** | ||||||
8728212-G-T | 8860171-G-T | *** | ||||||
10691087-G-A,C | *** | |||||||
10865816-A-ACAATC | *** | |||||||
10929577-C-A | *** | |||||||
10942506-G-T | *** | |||||||
10942561-CCATTCCACT-C | *** | |||||||
10978978-C-A | *** | |||||||
11018781-C-A | *** | |||||||
13487741-CCT-C,CCC | 11332065-CCT-C,CCC | *** | ||||||
13488889-G-T | 11333213-G-T | *** | ||||||
11671290-T-A | *** | |||||||
14846788-C-G | 12734854-C-G | *** | ||||||
15160319-C-A | 13048405-C-A | *** | ||||||
15199545-C-A | 13087631-C-A | *** | ||||||
15281413-C-A | 13169512-C-A | *** | ||||||
15416886-T-TAA | 13305006-T-TAA | 11×A | *** | |||||
15483849-T-C | 13371969-T-C | *** | ||||||
15702041-C-A | 13590161-C-A | *** | ||||||
15864321-C-A | 13752441-C-A | *** | ||||||
16340893-C-A | 14229013-C-A | *** | ||||||
16519344-C-A | 14407464-C-A | *** | ||||||
17375826-G-T | 15263946-G-T | *** | ||||||
17449174-C-A | 15337294-C-A | *** | ||||||
17707376-C-CAAA | 15595496-C-CAAA | 23×A | *** | |||||
17851800-C-A | 15739920-C-A | *** | ||||||
18900520-C-A | 16788640-C-A | *** | ||||||
19007816-C-A | 16895936-C-A | *** | ||||||
21177478-A-G | 19015592-A-G | *** | ||||||
21486958-C-A | 19325072-C-A | *** | ||||||
21558858-TAGTCTTTTA-T | 19396972-TAGTCTTTTA-T | *** | ||||||
21616210-C-A | 19454324-C-A | *** | ||||||
22180711-G-A | 20018825-G-A | *** | ||||||
22240726-G-T | 20078840-G-T | DYZ19 | *** | |||||
22815370-C-A | 20653484-C-A | FGC49297 | *** | |||||
23023095-C-A | 20861209-C-A | *** | ||||||
23380262-C-A | 21218376-C-A | *** | ||||||
23824088-C-A | 21662202-C-A | *** | ||||||
23827466-G-A | 21665580-G-A | *** | ||||||
21754274-G-T | *** | |||||||
24406803-G-C | 22260656-G-C | *** | ||||||
56837008-CTGCACTCCACTCAAT-C,CTGCACTCCACTCAAC | *** | |||||||
56839231-A-G | *** | |||||||
56850714-C-CA,T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.