McCan
BigY2: 238273MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 238273 |
---|---|---|---|---|---|---|---|---|
22265667-G-A | 20103781-G-A | Z3000/S951 | DYZ19 | A* | ||||
22265661-A-T | 20103775-A-T | DYZ19 | A* | |||||
22265666-G-T | 20103780-G-T | DYZ19 | A* | |||||
22265668-T-C | 20103782-T-C | DYZ19 | A* | |||||
28817787-G-A | 26671640-G-A | A* | ||||||
28789004-G-A | 26642857-G-A | BY151335 | + | |||||
15723868-G-A | 13611988-G-A | BY103612 | Y | Y | + | |||
21285792-A-C | 19123906-A-C | BY131660 | Y | Y | + | |||
13450798-CTTCA-C | 11295122-CTTCA-C | * | ||||||
23551264-C-CGT | 21389378-C-CGT | 22107634CGTGT-C | 14×GT | * | ||||
13450516-CTCCACTTCACTCCAC-C,CTCCAA | 11294840-CTCCACTTCACTCCAC-C,CTCCAA | * | ||||||
22318474-G-A | 20156588-G-A | DYZ19 | * | |||||
13143792-C-T | 10633278-C-T | ** | ||||||
13139699-G-T | 10629185-G-T | ** | ||||||
15323560-C-A | 13211678-C-A | ** | ||||||
10062563-G-C | 10224954-G-C | ** | ||||||
14793427-C-T | 12681498-C-T | M2180 CTS3279 | ** | |||||
28698666-GT-G | 26552519-GT-G | 9×T | ** | |||||
10062539-A-T | 10224930-A-T | ** | ||||||
13485547-T-A | 11329871-T-A | ** | ||||||
10062586-G-A | 10224977-G-A | ** | ||||||
10062555-GC-A | 10224946-GC-A | ** | ||||||
28812247-G-A | 26666100-G-A | ** | ||||||
10796639-C-G | ** | |||||||
16336928-G-T | 14225048-G-T | ** | ||||||
18753399-G-T | 16641519-G-T | ** | ||||||
11676816-G-T | ** | |||||||
11676817-G-A | ** | |||||||
3367088-C-A | 3499047-C-A | ** | ||||||
10958981-C-T | FT438219 | ** | ||||||
10744234-T-C | ** | |||||||
10889764-C-A | ** | |||||||
10889767-T-A | ** | |||||||
10987876-T-A | ** | |||||||
6882146-T-G | 7014105-T-G | ** | ||||||
11025805-C-A | ** | |||||||
10977069-TCTCCA-T | ** | |||||||
28794225-T-A | 26648078-T-A | ** | ||||||
4100848-C-A | 4232807-C-A | ** | ||||||
4171726-C-A | 4303685-C-A | ** | ||||||
3437057-G-T | 3569016-G-T | ** | ||||||
3327950-C-A | 3459909-C-A | ** | ||||||
9952390-C-A | 10114781-C-A | ** | ||||||
10796831-C-A | ** | |||||||
10744352-G-A | ** | |||||||
19948133-C-A | 17836253-C-A | P5_Prx | ** | |||||
26098022-A-C | 23951875-A-C | P1_Y1 | 8×AG | ** | ||||
22170464-G-T | 20008578-G-T | ** | ||||||
10987156-A-C | ** | |||||||
13461008-A-G | 11305332-A-G | ** | ||||||
28808614-G-T | 26662467-G-T | ** | ||||||
10744240-TC-T | ** | |||||||
56861859-T-A | ** | |||||||
10987189-T-TTCCTC | ** | |||||||
10987197-C-T | ** | |||||||
3550598-A-AC | 3682557-A-AC | ** | ||||||
10977091-T-C | ** | |||||||
10682543-A-G | ** | |||||||
22077290-C-A | 19915404-C-A | ** | ||||||
10633230-C-G | ** | |||||||
10744314-TTCCA-T | ** | |||||||
19107429-T-G | 16995549-T-G | ** | ||||||
19479467-C-A | 17367587-C-A | ** | ||||||
14589255-C-A | 12477455-C-A | ** | ||||||
7866605-G-A | 7998564-G-A | ** | ||||||
10844873-C-A | ** | |||||||
10844880-C-A | ** | |||||||
10844912-C-G | ** | |||||||
23899444-T-A | 21737558-T-A | ** | ||||||
18748932-C-A | 16637052-C-A | ** | ||||||
10889782-T-C | ** | |||||||
14029162-C-A | 11908456-C-A | ** | ||||||
14396441-C-CA | 12275737-C-CA | 9×A | ** | |||||
10785572-C-A | ** | |||||||
10834085-C-T | ** | |||||||
6112900-T-G | 6244859-T-G | ** | ||||||
10979808-T-C | ** | |||||||
10979822-C-G | ** | |||||||
10979846-C-T | ** | |||||||
10979848-G-C | ** | |||||||
10979855-T-C | ** | |||||||
13468075-C-A | 11312399-C-A | ** | ||||||
11647886-C-G | ** | |||||||
18933707-C-A | 16821827-C-A | ** | ||||||
10883546-T-A | ** | |||||||
9221730-C-A | 9384121-C-A | ** | ||||||
6112924-A-C | 6244883-A-C | ** | ||||||
14483253-C-A | 12362522-C-A | ** | ||||||
13582720-C-A | 11427044-C-A | ** | ||||||
10979828-C-T | ** | |||||||
21836326-C-A | 19674440-C-A | ** | ||||||
24280899-A-G | 22134752-A-G | P3_t1 | ** | |||||
10678408-C-A | ** | |||||||
10827961-A-C | ** | |||||||
26085579-C-A | 23939432-C-A | P1_Y1 | ** | |||||
15399290-C-A | 13287410-C-A | ** | ||||||
19948100-C-A | 17836220-C-A | P5_Prx | ** | |||||
5911813-C-A | 6043772-C-A | ** | ||||||
23779766-G-T | 21617880-G-T | ** | ||||||
9191044-G-T | 9353435-G-T | ** | ||||||
20312776-C-A | 18150890-C-A | P5_Dst | ** | |||||
5220159-C-CTT | 5352118-C-CTT | 21×T | ** | |||||
3849318-C-A | 3981277-C-A | ** | ||||||
7939472-T-TA | 8071431-T-TA | 35×A | ** | |||||
10816397-A-C | ** | |||||||
10935633-A-T | ** | |||||||
10666998-C-CTATT | ** | |||||||
20312772-G-T | 18150886-G-T | P5_Dst | ** | |||||
3790756-C-A | 3922715-C-A | ** | ||||||
5426382-C-G | 5558341-C-G | ** | ||||||
6074537-G-T | 6206496-G-T | ** | ||||||
7166870-C-A | 7298829-C-A | ** | ||||||
20815608-C-A | 18653722-C-A | P4_Gap | ** | |||||
3922924-C-A | 4054883-C-A | ** | ||||||
13468033-G-A | 11312357-G-A | ** | ||||||
7621886-C-A | 7753845-C-A | ** | ||||||
10809103-G-T | ** | |||||||
4900281-C-A | 5032240-C-A | ** | ||||||
10682532-C-T | BY83687 | ** | ||||||
10849803-T-A | ** | |||||||
10849760-C-T | ** | |||||||
10849824-C-T | ** | |||||||
10849831-A-T | ** | |||||||
10849834-C-CCCCTG | ** | |||||||
10746489-G-T | ** | |||||||
16279479-C-A | 14167599-C-A | ** | ||||||
16232469-C-A | 14120589-C-A | ** | ||||||
4902164-C-A | 5034123-C-A | ** | ||||||
11004420-C-A | ** | |||||||
21234821-C-A | 19072935-C-A | ** | ||||||
10827943-T-C | ** | |||||||
10827967-C-CTCGAA | ** | |||||||
5449465-G-T | 5581424-G-T | ** | ||||||
10872357-G-T | ** | |||||||
10839659-T-G | ** | |||||||
24016959-A-T | 21870812-A-T | ** | ||||||
56839197-G-T | ** | |||||||
10807825-C-A | ** | |||||||
13708988-A-T | 11553312-A-T | ** | ||||||
21852456-C-A | 19690570-C-A | ** | ||||||
10682516-C-CCCCCT | ** | |||||||
14191930-C-A | 12071224-C-A | ** | ||||||
2681052-A-G | 2813011-A-G | ** | ||||||
2684651-C-A | 2816610-C-A | ** | ||||||
2688667-C-A | 2820626-C-A | ** | ||||||
2729887-T-A | 2861846-T-A | ** | ||||||
2790263-C-A | 2922222-C-A | ** | ||||||
2935077-T-G | 3067036-T-G | ** | ||||||
2986080-C-A | 3118039-C-A | ** | ||||||
3093666-GAATAGC-G | 3225625-GAATAGC-G | ** | ||||||
3131136-C-A | 3263095-C-A | ** | ||||||
3148636-G-A | 3280595-G-A | ** | ||||||
3326466-C-A | 3458425-C-A | ** | ||||||
3512933-A-C | 3644892-A-C | ** | ||||||
3622459-C-A | 3754418-C-A | ** | ||||||
3659920-C-A | 3791879-C-A | ** | ||||||
3848733-C-A | 3980692-C-A | ** | ||||||
3876145-A-C | 4008104-A-C | ** | ||||||
4061535-G-T | 4193494-G-T | ** | ||||||
4087796-G-A | 4219755-G-A | ** | ||||||
4138950-G-T | 4270909-G-T | ** | ||||||
4271346-C-A | 4403305-C-A | ** | ||||||
4438047-T-A | 4570006-T-A | ** | ||||||
4469942-C-A | 4601901-C-A | ** | ||||||
4604211-C-A | 4736170-C-A | ** | ||||||
4778351-A-G | 4910310-A-G | ** | ||||||
4788756-T-G | 4920715-T-G | ** | ||||||
4797413-C-A | 4929372-C-A | ** | ||||||
4900293-C-A | 5032252-C-A | ** | ||||||
4936583-C-CTGTGTG | 5068542-C-CTGTGTG | 18×TG | ** | |||||
4996080-C-A | 5128039-C-A | ** | ||||||
5220184-A-T | 5352143-A-T | ** | ||||||
5294511-C-A | 5426470-C-A | ** | ||||||
5411704-G-T | 5543663-G-T | ** | ||||||
5426756-C-A | 5558715-C-A | ** | ||||||
5471819-T-A | 5603778-T-A | ** | ||||||
5471822-C-A | 5603781-C-A | ** | ||||||
5622509-A-T | 5754468-A-T | ** | ||||||
5675597-C-A | 5807556-C-A | ** | ||||||
5756391-G-T | 5888350-G-T | ** | ||||||
5817675-C-A | 5949634-C-A | ** | ||||||
5829149-C-A | 5961108-C-A | ** | ||||||
5904738-C-A | 6036697-C-A | ** | ||||||
6010459-C-A | 6142418-C-A | ** | ||||||
6012447-C-A | 6144406-C-A | ** | ||||||
6112881-T-G | 6244840-T-G | ** | ||||||
6492518-C-A | 6624477-C-A | ** | ||||||
6509421-C-A | 6641380-C-A | ** | ||||||
6535452-C-A | 6667411-C-A | ** | ||||||
6642711-A-C | 6774670-A-C | ** | ||||||
6688658-C-A | 6820617-C-A | ** | ||||||
6709078-C-A | 6841037-C-A | ** | ||||||
6714061-G-T | 6846020-G-T | ** | ||||||
6798934-A-T | 6930893-A-T | ** | ||||||
6882150-T-G | 7014109-T-G | ** | ||||||
6882162-T-G | 7014121-T-G | ** | ||||||
7040937-C-A | 7172896-C-A | ** | ||||||
7167132-C-A | 7299091-C-A | ** | ||||||
7228353-C-A | 7360312-C-A | ** | ||||||
7258759-A-C | 7390718-A-C | ** | ||||||
7363367-A-G | 7495326-A-G | ** | ||||||
7428163-C-A | 7560122-C-A | ** | ||||||
7463925-G-T | 7595884-G-T | IR1_L | ** | |||||
7499417-T-A | 7631376-T-A | IR1_L | ** | |||||
7754039-A-C | 7885998-A-C | ** | ||||||
7782972-T-G | 7914931-T-G | ** | ||||||
7866086-C-A | 7998045-C-A | ** | ||||||
7939346-G-T | 8071305-G-T | ** | ||||||
7984435-C-A | 8116394-C-A | ** | ||||||
7990306-C-G | 8122265-C-G | ** | ||||||
8078291-T-G | 8210250-T-G | ** | ||||||
8288808-C-A | 8420767-C-A | ** | ||||||
8712880-C-A | 8844839-C-A | ** | ||||||
9108080-T-A | ** | |||||||
9047026-G-T | 9209417-G-T | ** | ||||||
9181030-A-C | 9343421-A-C | ** | ||||||
9183739-T-C | 9346130-T-C | ** | ||||||
9221717-C-T | 9384108-C-T | ** | ||||||
9499022-C-A | 9661413-C-A | ** | ||||||
9500157-G-T | 9662548-G-T | ** | ||||||
9557932-T-A | 9720323-T-A | IR3_Prx | ** | |||||
9557951-C-A | 9720342-C-A | IR3_Prx | ** | |||||
9941467-C-A | 10103858-C-A | ** | ||||||
9962219-G-T | 10124610-G-T | ** | ||||||
9968358-G-A | 10130749-G-A | ** | ||||||
10011280-A-C | 10173671-A-C | ** | ||||||
10022199-G-A | 10184590-G-A | ** | ||||||
10062593-G-A | 10224984-G-A | ** | ||||||
10062593-G-GAA | 10224984-G-GAA | ** | ||||||
10094308-A-G | 10256699-A-G | ** | ||||||
10623245-G-T | ** | |||||||
10629184-A-T | ** | |||||||
10629187-C-G | ** | |||||||
10629190-C-G | ** | |||||||
10629205-C-G | ** | |||||||
10629208-C-G | ** | |||||||
10633220-C-T | ** | |||||||
10633244-T-G | ** | |||||||
10633245-C-T | ** | |||||||
10633250-C-G | ** | |||||||
10633302-A-AC | ** | |||||||
10633304-TC-T | ** | |||||||
10633320-C-G | ** | |||||||
10633328-T-A | ** | |||||||
10654002-C-A | ** | |||||||
10654345-C-T | ** | |||||||
10661422-C-A | ** | |||||||
10662829-T-C | ** | |||||||
10669602-C-A | ** | |||||||
10672224-CA-C | ** | |||||||
10686975-T-G | ** | |||||||
10688063-T-G | ** | |||||||
10688066-T-C | ** | |||||||
10744239-T-TG | ** | |||||||
10744244-T-G | ** | |||||||
10744531-T-G | ** | |||||||
10747037-C-A | ** | |||||||
10747038-C-A | ** | |||||||
10747046-T-G | ** | |||||||
10747394-C-A | ** | |||||||
10751045-A-T | ** | |||||||
10751071-T-C | ** | |||||||
10751113-C-A | ** | |||||||
10751116-C-T | ** | |||||||
10753430-C-A | ** | |||||||
10766341-CCATTT-C | ** | |||||||
10766371-C-T | ** | |||||||
10766372-C-A | ** | |||||||
10766377-C-CG | ** | |||||||
10766383-A-T | ** | |||||||
10766386-TC-T | ** | |||||||
10766392-C-A | ** | |||||||
10766394-C-T | ** | |||||||
10777002-C-A | ** | |||||||
10784616-C-A | ** | |||||||
10784676-C-A | ** | |||||||
10785878-TC-T | ** | |||||||
10785882-C-G | ** | |||||||
10785885-C-A | ** | |||||||
10785898-C-T | ** | |||||||
10785909-C-G | ** | |||||||
10785918-T-G | ** | |||||||
10790525-T-G | ** | |||||||
10797253-A-G | ** | |||||||
10797719-A-G | ** | |||||||
10797752-C-T | ** | |||||||
10802365-C-A | ** | |||||||
10803534-T-C | ** | |||||||
10816677-TGAG-T | ** | |||||||
10821840-T-G | ** | |||||||
10826405-C-A | ** | |||||||
10828237-C-A | ** | |||||||
10832298-T-A | ** | |||||||
10833531-C-T | ** | |||||||
10833810-C-A | ** | |||||||
10833905-C-A | ** | |||||||
10834175-C-A | ** | |||||||
10841022-C-T | ** | |||||||
10841041-C-T | ** | |||||||
10841816-C-A | ** | |||||||
10848215-TC-T | ** | |||||||
10864159-C-A | ** | |||||||
10865745-C-A | ** | |||||||
10866019-T-G | ** | |||||||
10866346-C-A | ** | |||||||
10868468-G-T | ** | |||||||
10869296-T-A | ** | |||||||
10889784-C-CCTTTTGACTG | ** | |||||||
10895015-CATTCT-C | ** | |||||||
10895030-C-A | ** | |||||||
10895037-T-C | ** | |||||||
10895634-C-A | ** | |||||||
10895653-C-A | ** | |||||||
10899040-C-G | ** | |||||||
10902469-G-T | ** | |||||||
10903300-T-G | ** | |||||||
10935324-T-G | ** | |||||||
10935540-T-C | ** | |||||||
10935627-C-T | ** | |||||||
10940428-C-T | ** | |||||||
10943300-C-A | ** | |||||||
10944134-C-G | ** | |||||||
10944145-T-G | ** | |||||||
10951710-T-C | ** | |||||||
10959568-C-A | ** | |||||||
10967855-T-G | ** | |||||||
10969256-C-G | ** | |||||||
10969257-A-G | ** | |||||||
10973123-C-A | ** | |||||||
10974314-C-A | ** | |||||||
10974802-C-A | ** | |||||||
10982916-C-A | ** | |||||||
10985154-C-T | ** | |||||||
10993356-C-A | ** | |||||||
10995703-C-A | ** | |||||||
11000462-C-A | ** | |||||||
11000941-T-A | ** | |||||||
11001090-T-G | ** | |||||||
11004410-C-CTCTGGGGTTT | ** | |||||||
11004425-C-A | ** | |||||||
11005537-C-A | ** | |||||||
11013118-T-G | ** | |||||||
11015781-C-A | ** | |||||||
11024560-C-G | ** | |||||||
11024561-A-T | ** | |||||||
11024571-A-T | ** | |||||||
11034815-A-ATTCCC | ** | |||||||
11036117-C-G | ** | |||||||
11037120-T-A | FT440404 | ** | ||||||
11037125-C-A | ** | |||||||
11037128-C-A | ** | |||||||
11037175-T-TTATAC | ** | |||||||
13213471-C-A | 11057795-C-A | ** | ||||||
13229678-C-A | 11074002-C-A | ** | ||||||
13271481-T-G | 11115805-T-G | ** | ||||||
13271510-G-T | 11115834-G-T | ** | ||||||
13466122-C-T | 11310446-C-T | ** | ||||||
13468061-G-A | 11312385-G-A | ** | ||||||
13468063-T-A | 11312387-T-A | ** | ||||||
13468068-T-G | 11312392-T-G | ** | ||||||
13468095-G-A | 11312419-G-A | ** | ||||||
13468096-T-C | 11312420-T-C | ** | ||||||
13522966-T-G | 11367290-T-G | ** | ||||||
13554184-C-A | 11398508-C-A | ** | ||||||
13594565-C-A | 11438889-C-A | ** | ||||||
13633811-T-A | 11478135-T-A | ** | ||||||
13701746-A-C | 11546070-A-C | ** | ||||||
11643843-C-A | ** | |||||||
11644217-G-A | ** | |||||||
11647876-A-T | ** | |||||||
11648013-A-C | ** | |||||||
11665505-G-T | ** | |||||||
13859337-A-C | 11738631-A-C | ** | ||||||
13886013-G-T | 11765307-G-T | ** | ||||||
13958744-T-G | 11838038-T-G | ** | ||||||
13960586-AGGATGGAT-A | 11839880-AGGATGGAT-A | 13×GGAT | ** | |||||
13974128-G-T | 11853422-G-T | ** | ||||||
13984199-T-A | 11863493-T-A | ** | ||||||
14034091-T-A | 11913385-T-A | ** | ||||||
14068521-T-A | 11947815-T-A | ** | ||||||
14124040-T-A | 12003334-T-A | ** | ||||||
14191959-C-G | 12071253-C-G | ** | ||||||
14191971-T-G | 12071265-T-G | ** | ||||||
14191979-C-G | 12071273-C-G | ** | ||||||
14240404-A-C | 12119698-A-C | ** | ||||||
14241799-A-G | 12121093-A-G | ** | ||||||
14384240-G-T | 12263536-G-T | ** | ||||||
14462600-C-A | 12341873-C-A | ** | ||||||
14486027-G-T | 12365296-G-T | ** | ||||||
14516978-T-C | 12405179-T-C | ** | ||||||
14518582-C-A | 12406783-C-A | ** | ||||||
14546821-C-A | 12435022-C-A | ** | ||||||
14557060-C-A | 12445261-C-A | ** | ||||||
14557723-G-T | 12445924-G-T | ** | ||||||
14673289-C-A | 12561355-C-A | ** | ||||||
14694758-C-A | 12582824-C-A | ** | ||||||
14716770-C-A | 12604838-C-A | ** | ||||||
14757852-G-T | 12645921-G-T | ** | ||||||
14769038-C-CT | 12657107-C-CT | 8×T | ** | |||||
14888048-G-A | 12776114-G-A | ** | ||||||
14948869-C-A | 12836943-C-A | ** | ||||||
14995502-C-A | 12883587-C-A | ** | ||||||
15177962-C-A | 13066048-C-A | ** | ||||||
15179914-G-T | 13068000-G-T | ** | ||||||
15202187-C-A | 13090273-C-A | ** | ||||||
15342699-C-A | 13230818-C-A | ** | ||||||
15386475-C-A | 13274595-C-A | ** | ||||||
15423187-G-T | 13311307-G-T | ** | ||||||
15566817-GAAAAA-G | 13454937-GAAAAA-G | 22×A | ** | |||||
15679950-C-A | 13568070-C-A | ** | ||||||
15745841-G-T | 13633961-G-T | ** | ||||||
15761065-T-A | 13649185-T-A | ** | ||||||
15761212-C-A | 13649332-C-A | ** | ||||||
15761717-C-A | 13649837-C-A | ** | ||||||
15882586-C-A | 13770706-C-A | ** | ||||||
15923830-C-A | 13811950-C-A | ** | ||||||
16011186-G-T | 13899306-G-T | ** | ||||||
16018368-C-A | 13906488-C-A | ** | ||||||
16044818-A-C | 13932938-A-C | ** | ||||||
16107476-G-T | 13995596-G-T | P8_Prx | ** | |||||
16123438-G-T | 14011558-G-T | P8_Prx | ** | |||||
16179673-C-A | 14067793-C-A | ** | ||||||
16184216-G-A | 14072336-G-A | ** | ||||||
16205796-C-CTT | 14093916-C-CTT | 21×T | ** | |||||
16275451-C-A | 14163571-C-A | ** | ||||||
16275542-T-A | 14163662-T-A | ** | ||||||
16298462-C-A | 14186582-C-A | ** | ||||||
16309299-A-T | 14197419-A-T | ** | ||||||
16352053-G-T | 14240173-G-T | ** | ||||||
16410158-C-A | 14298278-C-A | ** | ||||||
16540231-C-A | 14428351-C-A | ** | ||||||
16598675-A-T | 14486795-A-T | ** | ||||||
17027275-G-T | 14915395-G-T | ** | ||||||
17103843-C-A | 14991963-C-A | ** | ||||||
17215732-C-A | 15103852-C-A | ** | ||||||
17215775-A-C | 15103895-A-C | ** | ||||||
17367795-C-A | 15255915-C-A | ** | ||||||
17480225-C-A | 15368345-C-A | ** | ||||||
17512529-T-G | 15400649-T-G | ** | ||||||
17633226-C-A | 15521346-C-A | ** | ||||||
17757602-T-A | 15645722-T-A | ** | ||||||
17916579-G-T | 15804699-G-T | ** | ||||||
17923652-G-T | 15811772-G-T | ** | ||||||
18079284-C-A | 15967404-C-A | ** | ||||||
18401233-G-T | 16289353-G-T | P6_Gap | ** | |||||
18455873-G-GATAC | 16343993-G-GATAC | P6_Dst | ** | |||||
18653469-C-A | 16541589-C-A | ** | ||||||
18737424-A-G | 16625544-A-G | ** | ||||||
19107426-A-T | 16995546-A-T | ** | ||||||
19127726-T-G | 17015846-T-G | ** | ||||||
19138762-A-T | 17026882-A-T | ** | ||||||
19155116-G-T | 17043236-G-T | ** | ||||||
19244813-C-A | 17132933-C-A | ** | ||||||
19248346-C-A | 17136466-C-A | ** | ||||||
19302766-G-T | 17190886-G-T | ** | ||||||
19415371-C-A | 17303491-C-A | ** | ||||||
19477377-AG-A | 17365497-AG-A | ** | ||||||
19499095-C-A | 17387215-C-A | ** | ||||||
19558256-A-T | 17446376-A-T | ** | ||||||
19677964-A-C | 17566084-A-C | P5_Prx | ** | |||||
19677969-T-G | 17566089-T-G | P5_Prx | ** | |||||
19700949-A-C | 17589069-A-C | P5_Prx | ** | |||||
19741955-T-TTC | 17630075-T-TTC | P5_Prx | ** | |||||
19768262-A-T | 17656382-A-T | P5_Prx | ** | |||||
19768263-C-A | 17656383-C-A | P5_Prx | ** | |||||
19768267-A-T | 17656387-A-T | P5_Prx | ** | |||||
19842168-C-A | 17730288-C-A | P5_Prx | ** | |||||
20280159-C-A | 18118273-C-A | P5_Dst | ** | |||||
20312756-G-T | 18150870-G-T | P5_Dst | ** | |||||
20433734-G-T | 18271848-G-T | P5_Dst | ** | |||||
20587940-C-A | 18426054-C-A | P5_Dst | ** | |||||
20618023-A-T | 18456137-A-T | P4_Prx | ** | |||||
20618035-A-T | 18456149-A-T | P4_Prx | ** | |||||
20618047-G-T | 18456161-G-T | P4_Prx | ** | |||||
20825621-C-A | 18663735-C-A | FT411523 | P4_Gap | ** | ||||
21079068-G-T | 18917182-G-T | ** | ||||||
21118616-C-T | 18956730-C-T | ** | ||||||
21234771-T-C | 19072885-T-C | ** | ||||||
21243981-A-T | 19082095-A-T | ** | ||||||
21269213-T-A | 19107327-T-A | ** | ||||||
21283180-A-C | 19121294-A-C | ** | ||||||
21340181-A-C | 19178295-A-C | ** | ||||||
21340190-T-G | 19178304-T-G | ** | ||||||
21340226-T-G | 19178340-T-G | ** | ||||||
21340248-A-C | 19178362-A-C | ** | ||||||
21541066-C-A | 19379180-C-A | FT31240 | ** | |||||
21616116-C-A | 19454230-C-A | ** | ||||||
21669458-G-T | 19507572-G-T | ** | ||||||
21888263-ATGAGTTCATGACCT-A | 19726377-ATGAGTTCATGACCT-A | ** | ||||||
21959363-C-A | 19797477-C-A | ** | ||||||
22008444-C-A | 19846558-C-A | FTB83731 | ** | |||||
22080887-G-T | 19919001-G-T | ** | ||||||
22325411-TTAG-T | 20163525-TTAG-T | DYZ19 | ** | |||||
22422798-C-G | 20260912-C-G | DYZ19 | ** | |||||
22757625-A-C | 20595739-A-C | ** | ||||||
22810720-A-T | 20648834-A-T | ** | ||||||
22811007-C-A | 20649121-C-A | ** | ||||||
22833901-T-G | 20672015-T-G | ** | ||||||
23026874-C-A | 20864988-C-A | ** | ||||||
23449158-A-C | 21287272-A-C | ** | ||||||
23464848-G-T | 21302962-G-T | ** | ||||||
23789565-A-T | 21627679-A-T | ** | ||||||
23793482-C-A | 21631596-C-A | ** | ||||||
23825158-G-A | 21663272-G-A | ** | ||||||
21755452-G-T | ** | |||||||
24016985-TC-T | 21870838-TC-T | ** | ||||||
24247362-AG-A | 22101215-AG-A | P3_b1 | ** | |||||
24247376-T-G | 22101229-T-G | P3_b1 | ** | |||||
24278295-A-C | 22132148-A-C | P3_b1 | ** | |||||
24407424-C-A | 22261277-C-A | ** | ||||||
24475180-T-G | 22329033-T-G | ** | ||||||
24509423-C-A | 22363276-C-A | ** | ||||||
24533520-A-T | 22387373-A-T | P3_t2 | ** | |||||
24533521-A-T | 22387374-A-T | P3_t2 | ** | |||||
24533528-C-A | 22387381-C-A | P3_t2 | ** | |||||
24533547-A-T | 22387400-A-T | P3_t2 | ** | |||||
24612110-GCAAAAAA-G | 22465963-GCAAAAAA-G | P3_t2 | ** | |||||
25975413-T-A | 23829266-T-A | P1_Y1 | ** | |||||
25975415-C-A | 23829268-C-A | P1_Y1 | ** | |||||
25975421-C-A | 23829274-C-A | P1_Y1 | ** | |||||
25975428-G-T | 23829281-G-T | P1_Y1 | ** | |||||
25975437-G-T | 23829290-G-T | P1_Y1 | ** | |||||
25984703-T-A | 23838556-T-A | P1_Y1 | ** | |||||
25984704-G-C | 23838557-G-C | P1_Y1 | ** | |||||
25984716-T-A | 23838569-T-A | P1_Y1 | ** | |||||
25984732-T-A | 23838585-T-A | P1_Y1 | ** | |||||
26108402-T-A | 23962255-T-A | P1_Y1 | ** | |||||
26108409-T-A | 23962262-T-A | P1_Y1 | ** | |||||
26108425-T-A | 23962278-T-A | P1_Y1 | ** | |||||
26108426-G-T | 23962279-G-T | P1_Y1 | ** | |||||
26108435-T-A | 23962288-T-A | P1_Y1 | ** | |||||
26108439-T-A | 23962292-T-A | P1_Y1 | ** | |||||
26108443-T-A | 23962296-T-A | P1_Y1 | ** | |||||
26148715-A-T | 24002568-A-T | P1_Y1 | ** | |||||
26170427-A-T | 24024280-A-T | P1_Y1 | ** | |||||
26274062-G-T | 24127915-G-T | P1_Y1 | ** | |||||
26274071-T-A | 24127924-T-A | P1_Y1 | ** | |||||
26325097-G-T | 24178950-G-T | P1_Y1 | ** | |||||
28229252-T-C | 26083105-T-C | P1_b4 | ** | |||||
28461967-C-A | 26315820-C-A | ** | ||||||
28497240-C-A | 26351093-C-A | ** | ||||||
28508027-G-T | 26361880-G-T | ** | ||||||
28546682-C-A | 26400535-C-A | ** | ||||||
28659764-A-G | 26513617-A-G | ** | ||||||
28715410-A-C | 26569263-A-C | ** | ||||||
28808609-G-T | 26662462-G-T | ** | ||||||
28808629-G-T | 26662482-G-T | ** | ||||||
28812169-G-T | 26666022-G-T | ** | ||||||
28812239-G-T | 26666092-G-T | ** | ||||||
56837860-C-A | ** | |||||||
56841761-A-C | ** | |||||||
56847073-G-A | ** | |||||||
56861731-C-T | ** | |||||||
15034-T-A | ** | |||||||
15040-T-A | ** | |||||||
13801110-C-A | 11680404-C-A | *** | ||||||
13850292-G-C | 11729586-G-C | *** | ||||||
11643664-G-C | *** | |||||||
11676810-T-C | *** | |||||||
7852509-C-A | 7984468-C-A | *** | ||||||
56832884-CACTCA-C | *** | |||||||
10847113-C-A | *** | |||||||
15412313-A-T | 13300433-A-T | *** | ||||||
11676761-G-C | *** | |||||||
20865487-GTATA-G,GTA | 18703601-GTATA-G,GTA | P4_Dst | 9×TA | *** | ||||
19138845-C-A | 17026965-C-A | *** | ||||||
13801099-A-G,T | 11680393-A-G,T | *** | ||||||
13801098-C-T | 11680392-C-T | *** | ||||||
13801111-A-T | 11680405-A-T | *** | ||||||
11014428-A-G | *** | |||||||
10801708-A-T | *** | |||||||
10669431-CTCCAT-C | *** | |||||||
13488611-T-C | 11332935-T-C | *** | ||||||
5965932-T-C | 6097891-T-C | *** | ||||||
7313559-T-C | 7445518-T-C | *** | ||||||
8146260-C-A | 8278219-C-A | *** | ||||||
10818781-C-A | *** | |||||||
10935552-C-T | *** | |||||||
10958304-C-A | *** | |||||||
10997558-A-G | *** | |||||||
10999878-C-CG | *** | |||||||
14413210-CAAA-C,CAAAAA | 12292507-CAAA-C,CAAAAA | 23×A | *** | |||||
14557886-AC-A | 12446087-AC-A | *** | ||||||
14557896-C-A | 12446097-C-A | *** | ||||||
14592592-CATT-C | 12480792-CATT-C | 6×ATT | *** | |||||
15439079-C-A | 13327199-C-A | *** | ||||||
16959453-C-CAA | 14847573-C-CAA | 13×A | *** | |||||
18565230-C-A | 16453350-C-A | *** | ||||||
18819695-C-A | 16707815-C-A | *** | ||||||
21237230-CA-C,CAAA | 19075344-CA-C,CAAA | 16×A | *** | |||||
22228118-A-G | 20066232-A-G | DYZ19 | *** | |||||
22537875-C-A | 20375989-C-A | *** | ||||||
22590472-C-A | 20428586-C-A | *** | ||||||
22655299-C-A | 20493413-C-A | *** | ||||||
56833154-T-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.