O'Keefe
BigY2: 166433MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 166433 |
---|---|---|---|---|---|---|---|---|
28817263-A-C | 26671116-A-C | A* | ||||||
18303577-G-T | 16191697-G-T | P6_Prx | A* | |||||
22304073-G-A | 20142187-G-A | DYZ19 | A* | |||||
22313751-T-C | 20151865-T-C | DYZ19 | A* | |||||
25870780-T-C | 23724633-T-C | P1_Y1 | A* | |||||
28536049-C-CAT | 26389902-C-CAT | A* | ||||||
28816563-G-C | 26670416-G-C | A* | ||||||
13821944-T-G | 11701238-T-G | FGC9807 FGC9773 | FGC9773 Z17265 | DYZ17 | + | |||
16248355-C-T | 14136475-C-T | BY106322 | Y | Y | + | |||
17344028-G-A | 15232148-G-A | BY114011 | Y | Y | + | |||
17676893-C-T | 15565013-C-T | BY116580 | Y | Y | + | |||
18605791-T-A | 16493911-T-A | BY122528 | Y | Y | + | |||
21719286-G-T | 19557400-G-T | BY134953 | Y | Y | + | |||
19411968-A-G | 17300088-A-G | BY36913 | ** | |||||
8977029-C-A | 9139420-C-A | 16×A | ** | |||||
15122164-T-G | 13010251-T-G | ** | ||||||
58969442-TAC-T | 56823295-TAC-T | 13×AC | ** | |||||
7167274-C-A | 7299233-C-A | Y9593 Z8758 | ** | |||||
15679747-T-A | 13567867-T-A | FT312304 | ** | |||||
10020493-G-T | 10182884-G-T | ** | ||||||
22768819-CTTTTT-C | 20606933-CTTTTT-C | 20×T | ** | |||||
9722500-G-GA | 9884891-G-GA | IR3_Prx | 18×A | ** | ||||
22330280-G-A | 20168394-G-A | BY217482 | DYZ19 | ** | ||||
14464345-A-T | 12343618-A-T | ** | ||||||
28556382-T-G | 26410235-T-G | ** | ||||||
10661651-T-C | ** | |||||||
28792970-T-A | 26646823-T-A | ** | ||||||
28792970-TG-T | 26646823-TG-T | ** | ||||||
10764596-A-C | ** | |||||||
10809022-G-C | ** | |||||||
27620768-GAC-G | 25474621-GAC-G | P1_Y2 | 9×AC | ** | ||||
20045268-G-T | 17933388-G-T | P5_Prx | ** | |||||
3389133-T-C | 3521092-T-C | ** | ||||||
10801511-C-G | ** | |||||||
14502493-C-A | 12390698-C-A | ** | ||||||
25815218-C-A | 23669071-C-A | P1_b3 | ** | |||||
25815220-T-A | 23669073-T-A | P1_b3 | ** | |||||
19899631-AG-A | 17787751-AG-A | P5_Prx | ** | |||||
10780625-T-TACTGC | ** | |||||||
10953389-C-A | ** | |||||||
10964542-G-T | ** | |||||||
26428110-C-A | 24281963-C-A | P1_Y1 | ** | |||||
25815238-G-T | 23669091-G-T | P1_b3 | ** | |||||
11027326-C-A | ** | |||||||
13501973-C-A | 11346297-C-A | ** | ||||||
25815234-T-A | 23669087-T-A | P1_b3 | ** | |||||
25815239-T-A | 23669092-T-A | P1_b3 | ** | |||||
10808970-A-T | ** | |||||||
10870473-AGT-A | ** | |||||||
10693046-C-A | ** | |||||||
7248086-C-A | 7380045-C-A | ** | ||||||
21328848-C-A | 19166962-C-A | ** | ||||||
20888604-G-T | 18726718-G-T | P4_Dst | ** | |||||
3849075-C-A | 3981034-C-A | ** | ||||||
10808982-C-T | ** | |||||||
10808995-T-C | ** | |||||||
10809010-G-C | ** | |||||||
10670821-C-A | ** | |||||||
10911698-G-T | ** | |||||||
20326038-C-G | 18164152-C-G | P5_Dst | ** | |||||
10949195-G-C | ** | |||||||
15816553-C-A | 13704673-C-A | ** | ||||||
17023418-C-A | 14911538-C-A | ** | ||||||
14823685-T-C | 12711752-T-C | ** | ||||||
13577959-C-T | 11422283-C-T | ** | ||||||
13577960-A-G | 11422284-A-G | ** | ||||||
10971932-CA-C | ** | |||||||
10781234-C-G | ** | |||||||
11027278-C-A | ** | |||||||
10829372-T-C | ** | |||||||
10942693-A-T | ** | |||||||
19187446-CTTT-C | 17075566-CTTT-C | 34×T | ** | |||||
25995031-CTATATA-C | 23848884-CTATATA-C | P1_Y1 | 12×TA | ** | ||||
10947827-A-T | ** | |||||||
10947848-T-C | ** | |||||||
10947861-C-T | ** | |||||||
10947879-T-A | ** | |||||||
17569226-GAAAAA-G | 15457346-GAAAAA-G | 25×A | ** | |||||
5060219-C-A | 5192178-C-A | ** | ||||||
26099764-C-A | 23953617-C-A | P1_Y1 | ** | |||||
10951249-A-C | ** | |||||||
10951253-TTCTTTTCA-T | ** | |||||||
19746885-GT-G | 17635005-GT-G | P5_Prx | ** | |||||
23041141-C-A | 20879255-C-A | ** | ||||||
24475132-C-A | 22328985-C-A | ** | ||||||
10979601-G-A | ** | |||||||
18491661-A-T | 16379781-A-T | P6_Dst | ** | |||||
19496216-C-A | 17384336-C-A | ** | ||||||
10060688-C-A | 10223079-C-A | ** | ||||||
10942699-C-T | ** | |||||||
4174951-A-T | 4306910-A-T | ** | ||||||
16545414-CAAAAAA-C | 14433534-CAAAAAA-C | 24×A | ** | |||||
6756935-G-AT | 6888894-G-AT | ** | ||||||
17328941-C-A | 15217061-C-A | ** | ||||||
23577053-C-A | 21415167-C-A | ** | ||||||
10949168-T-C | ** | |||||||
10947833-G-C | ** | |||||||
4174928-C-A | 4306887-C-A | ** | ||||||
19847665-TA-T | 17735785-TA-T | P5_Prx | ** | |||||
6106105-C-A | 6238064-C-A | ** | ||||||
10979582-T-G | ** | |||||||
28479751-C-A | 26333604-C-A | FTA3743 | ** | |||||
10746879-A-T | ** | |||||||
7135406-TTTG-T | 7267365-TTTG-T | ** | ||||||
7028804-C-A | 7160763-C-A | ** | ||||||
10870442-CA-C | ** | |||||||
8290105-C-A | 8422064-C-A | ** | ||||||
10900785-C-A | ** | |||||||
10949155-C-A | ** | |||||||
16705051-C-A | 14593171-C-A | ** | ||||||
22203792-C-A | 20041906-C-A | ** | ||||||
10746889-A-AATCCG | ** | |||||||
10746929-ATTCCATTCTGTT-A | ** | |||||||
10987408-C-A | ** | |||||||
21073327-C-A | 18911441-C-A | ** | ||||||
9498925-C-A | 9661316-C-A | ** | ||||||
20603924-T-A | 18442038-T-A | P5_Dst | ** | |||||
7084410-C-A | 7216369-C-A | ** | ||||||
28229264-C-A | 26083117-C-A | P1_b4 | ** | |||||
10687625-C-A | ** | |||||||
17918732-C-A | 15806852-C-A | ** | ||||||
14516843-C-T | 12405044-C-T | ** | ||||||
10942667-T-A | ** | |||||||
22562437-G-A | 20400551-G-A | ** | ||||||
14764385-C-A | 12652454-C-A | ** | ||||||
5368319-G-T | 5500278-G-T | ** | ||||||
10799463-T-A | ** | |||||||
27633830-G-T | 25487683-G-T | P1_Y2 | ** | |||||
14100979-A-C | 11980273-A-C | ** | ||||||
7821330-C-A | 7953289-C-A | ** | ||||||
11035327-A-C | ** | |||||||
14470638-C-A | 12349907-C-A | ** | ||||||
16629357-T-A | 14517477-T-A | ** | ||||||
10971295-C-A | ** | |||||||
7170817-C-A | 7302776-C-A | ** | ||||||
21042960-C-A | 18881074-C-A | ** | ||||||
22124434-C-A | 19962548-C-A | ** | ||||||
18923360-TG-T | 16811480-TG-T | ** | ||||||
9492020-C-A | 9654411-C-A | ** | ||||||
6106101-T-A | 6238060-T-A | ** | ||||||
10949147-C-A | ** | |||||||
13898740-G-T | 11778034-G-T | FGC42237 | ** | |||||
28792966-G-A | 26646819-G-A | ** | ||||||
28792987-G-C | 26646840-G-C | ** | ||||||
27916384-G-GAA | 25770237-G-GAA | P1_Y2 | 14×A | ** | ||||
2685684-C-A | 2817643-C-A | ** | ||||||
2758875-G-T | 2890834-G-T | ** | ||||||
2865787-G-T | 2997746-G-T | ** | ||||||
2948341-A-G | 3080300-A-G | ** | ||||||
2970430-C-A | 3102389-C-A | ** | ||||||
2980352-T-G | 3112311-T-G | FGC31013 | ** | |||||
3104271-C-A | 3236230-C-A | ** | ||||||
3107591-G-C | 3239550-G-C | ** | ||||||
3134256-GA-G | 3266215-GA-G | 10×A | ** | |||||
3178203-C-A | 3310162-C-A | ** | ||||||
3250623-C-A | 3382582-C-A | ** | ||||||
3284154-C-A | 3416113-C-A | ** | ||||||
3291885-G-T | 3423844-G-T | ** | ||||||
3331162-T-A | 3463121-T-A | ** | ||||||
3389141-C-T | 3521100-C-T | ** | ||||||
3389142-A-G | 3521101-A-G | ** | ||||||
3389144-G-A | 3521103-G-A | ** | ||||||
3389169-G-A | 3521128-G-A | ** | ||||||
3501154-C-G | 3633113-C-G | ** | ||||||
3696732-G-T | 3828691-G-T | ** | ||||||
3705154-AC-A | 3837113-AC-A | ** | ||||||
3833605-C-A | 3965564-C-A | ** | ||||||
3922962-G-T | 4054921-G-T | ** | ||||||
3930193-C-A | 4062152-C-A | ** | ||||||
4070051-C-A | 4202010-C-A | ** | ||||||
4159846-A-C | 4291805-A-C | ** | ||||||
4160321-C-A | 4292280-C-A | ** | ||||||
4174924-G-T | 4306883-G-T | ** | ||||||
4301306-T-TAA | 4433265-T-TAA | 12×A | ** | |||||
4383247-C-A | 4515206-C-A | ** | ||||||
4567085-C-A | 4699044-C-A | ** | ||||||
4712448-C-A | 4844407-C-A | ** | ||||||
4757256-T-A | 4889215-T-A | ** | ||||||
4929278-A-C | 5061237-A-C | ** | ||||||
4933756-G-T | 5065715-G-T | ** | ||||||
4981454-C-A | 5113413-C-A | ** | ||||||
5004284-C-A | 5136243-C-A | ** | ||||||
5183443-G-T | 5315402-G-T | ** | ||||||
5249056-C-A | 5381015-C-A | ** | ||||||
5269809-G-A | 5401768-G-A | FTA48024 | ** | |||||
5269889-C-A | 5401848-C-A | ** | ||||||
5385812-C-A | 5517771-C-A | FT263400 | ** | |||||
5401208-G-T | 5533167-G-T | ** | ||||||
5448789-T-G | 5580748-T-G | ** | ||||||
5560066-C-A | 5692025-C-A | ** | ||||||
5596856-G-T | 5728815-G-T | ** | ||||||
5865428-A-C | 5997387-A-C | ** | ||||||
5905494-C-A | 6037453-C-A | ** | ||||||
5968378-C-A | 6100337-C-A | ** | ||||||
5971596-C-G | 6103555-C-G | ** | ||||||
5995898-C-A | 6127857-C-A | ** | ||||||
6037572-C-A | 6169531-C-A | ** | ||||||
6106084-T-A | 6238043-T-A | ** | ||||||
6106100-C-A | 6238059-C-A | ** | ||||||
6147504-G-T | 6279463-G-T | IR3_Dst | ** | |||||
6359189-C-A | 6491148-C-A | ** | ||||||
6599652-G-T | 6731611-G-T | ** | ||||||
6610480-C-A | 6742439-C-A | ** | ||||||
6612839-G-T | 6744798-G-T | ** | ||||||
6631876-T-A | 6763835-T-A | ** | ||||||
6646249-G-T | 6778208-G-T | ** | ||||||
6765640-GTTTTTT-G | 6897599-GTTTTTT-G | 21×T | ** | |||||
6918573-T-A | 7050532-T-A | ** | ||||||
6978421-T-G | 7110380-T-G | ** | ||||||
7015258-C-A | 7147217-C-A | ** | ||||||
7016474-G-T | 7148433-G-T | ** | ||||||
7090888-C-A | 7222847-C-A | ** | ||||||
7152921-C-A | 7284880-C-A | ** | ||||||
7152940-G-T | 7284899-G-T | FT280506 | ** | |||||
7170575-T-G | 7302534-T-G | ** | ||||||
7185644-T-G | 7317603-T-G | ** | ||||||
7237158-C-A | 7369117-C-A | ** | ||||||
7255062-C-A | 7387021-C-A | ** | ||||||
7256238-T-A | 7388197-T-A | ** | ||||||
7257824-T-G | 7389783-T-G | ** | ||||||
7301633-A-C | 7433592-A-C | ** | ||||||
7314664-T-G | 7446623-T-G | FT359985 | ** | |||||
7332996-C-A | 7464955-C-A | ** | ||||||
7363373-C-A | 7495332-C-A | ** | ||||||
7396447-C-A | 7528406-C-A | ** | ||||||
7460345-A-C | 7592304-A-C | IR1_L | ** | |||||
7480233-G-A | 7612192-G-A | IR1_L | ** | |||||
7759312-C-A | 7891271-C-A | ** | ||||||
7894847-G-T | 8026806-G-T | ** | ||||||
7970009-G-T | 8101968-G-T | ** | ||||||
7974583-C-A | 8106542-C-A | ** | ||||||
8075018-G-T | 8206977-G-T | ** | ||||||
8077480-T-C | 8209439-T-C | ** | ||||||
8112564-G-A | 8244523-G-A | ** | ||||||
8151606-C-A | 8283565-C-A | ** | ||||||
8274070-A-T | 8406029-A-T | ** | ||||||
8291017-C-A | 8422976-C-A | ** | ||||||
8371730-C-T | 8503689-C-T | ** | ||||||
8723721-C-A | 8855680-C-A | ** | ||||||
8736755-G-T | 8868714-G-T | ** | ||||||
8807066-C-A | 8939025-C-A | ** | ||||||
8865865-C-A | 8997824-C-A | ** | ||||||
9112771-G-T | ** | |||||||
9117102-T-A | 9279493-T-A | ** | ||||||
9207214-G-T | 9369605-G-T | ** | ||||||
9207220-C-A | 9369611-C-A | ** | ||||||
9222298-G-T | 9384689-G-T | ** | ||||||
9222309-T-A | 9384700-T-A | ** | ||||||
9222313-T-A | 9384704-T-A | ** | ||||||
9222324-T-A | 9384715-T-A | ** | ||||||
9222331-G-T | 9384722-G-T | ** | ||||||
9830832-G-T | 9993223-G-T | ** | ||||||
9865289-TAATTATTTG-T | 10027680-TAATTATTTG-T | ** | ||||||
9939842-G-T | 10102233-G-T | ** | ||||||
9961526-C-A | 10123917-C-A | ** | ||||||
10031106-T-A | 10193497-T-A | ** | ||||||
10658605-T-TCCCAG | ** | |||||||
10658823-C-A | ** | |||||||
10661603-C-G | ** | |||||||
10661658-C-T | ** | |||||||
10661667-C-A | ** | |||||||
10661691-C-T | ** | |||||||
10667569-T-A | ** | |||||||
10670901-C-A | ** | |||||||
10685767-C-A | ** | |||||||
10686231-C-G | ** | |||||||
10687489-A-C | ** | |||||||
10688946-C-A | ** | |||||||
10691202-C-A | ** | |||||||
10692920-T-TA | ** | |||||||
10692922-TA-T | ** | |||||||
10753935-T-A | FT429732 | ** | ||||||
10756189-T-G | ** | |||||||
10756192-C-A | ** | |||||||
10756194-T-C | ** | |||||||
10757097-G-T | ** | |||||||
10762351-C-A | ** | |||||||
10767636-C-A | ** | |||||||
10782277-C-A | ** | |||||||
10783927-T-C | ** | |||||||
10795559-C-A | ** | |||||||
10796662-C-A | ** | |||||||
10797679-C-T | ** | |||||||
10800582-T-A | ** | |||||||
10800589-CCATTT-C | ** | |||||||
10800601-A-C | ** | |||||||
10800606-A-G | ** | |||||||
10800910-C-A | FT431806 | ** | ||||||
10806142-C-A | ** | |||||||
10806853-C-A | ** | |||||||
10806955-C-A | ** | |||||||
10822153-C-A | ** | |||||||
10827646-G-T | ** | |||||||
10829225-C-A | ** | |||||||
10829307-C-A | ** | |||||||
10833298-A-T | ** | |||||||
10839391-C-A | ** | |||||||
10841956-T-G | ** | |||||||
10850217-G-T | ** | |||||||
10857613-C-A | ** | |||||||
10866329-CACCAC-T | ** | |||||||
10866347-C-T | ** | |||||||
10866354-T-C | ** | |||||||
10868075-A-C | ** | |||||||
10873777-C-A | ** | |||||||
10884733-A-T | ** | |||||||
10885506-C-G | ** | |||||||
10893055-C-A | ** | |||||||
10894070-C-A | ** | |||||||
10900026-C-CA | ** | |||||||
10901719-C-CTCGAA | ** | |||||||
10907903-C-A | ** | |||||||
10912083-A-T | ** | |||||||
10915366-G-T | ** | |||||||
10929779-T-C | ** | |||||||
10941614-T-C | ** | |||||||
10942587-G-T | ** | |||||||
10942645-T-A | ** | |||||||
10942652-C-T | ** | |||||||
10942660-T-A | ** | |||||||
10944155-A-C | ** | |||||||
10947816-C-A | ** | |||||||
10949104-AGTCCACT-A | ** | |||||||
10949114-A-C | ** | |||||||
10949125-C-T | ** | |||||||
10949127-C-G | ** | |||||||
10949135-C-A | ** | |||||||
10949145-C-T | ** | |||||||
10949148-T-C | ** | |||||||
10950735-C-A | ** | |||||||
10956509-C-A | ** | |||||||
10959167-A-T | ** | |||||||
10968468-C-A | ** | |||||||
10970722-C-A | FGC77741 | ** | ||||||
10972647-A-T | ** | |||||||
10972660-C-G | ** | |||||||
10973215-C-T | ** | |||||||
10973622-C-T | ** | |||||||
10974312-C-A | ** | |||||||
10974351-C-A | ** | |||||||
10975483-C-A | ** | |||||||
10975500-C-A | ** | |||||||
10976318-C-A | ** | |||||||
10976378-C-A | ** | |||||||
10979579-A-C | ** | |||||||
10979581-T-A | ** | |||||||
10984880-TTTCCA-T | ** | |||||||
10984939-C-T | ** | |||||||
10985304-C-T | ** | |||||||
10987390-A-T | ** | |||||||
10987402-T-A | ** | |||||||
10992571-C-A | ** | |||||||
10997406-C-A | ** | |||||||
11018187-G-T | ** | |||||||
11022964-T-A | ** | |||||||
11031524-C-A | ** | |||||||
11033908-C-A | ** | |||||||
13197996-C-A | 11042320-C-A | ** | ||||||
13222150-G-C | 11066474-G-C | ** | ||||||
13222153-G-A | 11066477-G-A | ** | ||||||
13222159-G-C | 11066483-G-C | ** | ||||||
13227888-G-A | 11072212-G-A | ** | ||||||
13227920-G-A | 11072244-G-A | ** | ||||||
13332171-C-A | 11176495-C-A | ** | ||||||
13486780-C-A | 11331104-C-A | ** | ||||||
13512923-C-A | 11357247-C-A | ** | ||||||
13522211-C-T | 11366535-C-T | A9300 | ** | |||||
13551616-G-T | 11395940-G-T | ** | ||||||
13570925-C-A | 11415249-C-A | ** | ||||||
13631474-T-C | 11475798-T-C | ** | ||||||
13633101-A-T | 11477425-A-T | ** | ||||||
13633865-C-A | 11478189-C-A | ** | ||||||
13708910-A-T | 11553234-A-T | DYZ17 | ** | |||||
13725037-C-T | 11569361-C-T | DYZ17 | ** | |||||
13725789-C-A | 11570113-C-A | DYZ17 | ** | |||||
13725799-G-T | 11570123-G-T | DYZ17 | ** | |||||
11650531-C-A | DYZ17 | ** | ||||||
11659038-A-C | DYZ17 | ** | ||||||
11660236-G-T | DYZ17 | ** | ||||||
11677172-C-A | DYZ17 | ** | ||||||
13856270-A-C | 11735564-A-C | DYZ17 | ** | |||||
13885517-C-A | 11764811-C-A | ** | ||||||
13908393-C-A | 11787687-C-A | ** | ||||||
13934891-A-G | 11814185-A-G | ** | ||||||
13935087-C-A | 11814381-C-A | ** | ||||||
13935607-G-T | 11814901-G-T | ** | ||||||
13946881-G-A | 11826175-G-A | BY111228 | FT76122 | ** | ||||
13956108-G-T | 11835402-G-T | ** | ||||||
14020346-A-T | 11899640-A-T | ** | ||||||
14079562-C-A | 11958856-C-A | ** | ||||||
14100996-T-A | 11980290-T-A | ** | ||||||
14118239-C-A | 11997533-C-A | ** | ||||||
14226386-C-A | 12105680-C-A | ** | ||||||
14274113-A-T | 12153407-A-T | ** | ||||||
14339459-C-A | 12218754-C-A | ** | ||||||
14384598-G-T | 12263894-G-T | ** | ||||||
14471859-G-T | 12351128-G-T | ** | ||||||
14492734-T-C | 12380931-T-C | ** | ||||||
14516840-C-A | 12405041-C-A | ** | ||||||
14516853-T-C | 12405054-T-C | Y49629 | ** | |||||
14557196-C-A | 12445397-C-A | ** | ||||||
14559263-C-A | 12447464-C-A | ** | ||||||
14585687-G-T | 12473887-G-T | ** | ||||||
14586136-G-T | 12474336-G-T | ** | ||||||
14586200-G-T | 12474400-G-T | ** | ||||||
14766553-C-A | 12654622-C-A | ** | ||||||
14799825-C-A | 12687896-C-A | ** | ||||||
14802810-C-A | 12690881-C-A | ** | ||||||
14832021-C-A | 12720088-C-A | ** | ||||||
14908450-C-A | 12796517-C-A | ** | ||||||
15158778-C-A | 13046864-C-A | ** | ||||||
15170946-T-A | 13059032-T-A | ** | ||||||
15176480-C-A | 13064566-C-A | ** | ||||||
15176494-C-A | 13064580-C-A | ** | ||||||
15177427-C-CA | 13065513-C-CA | ** | ||||||
15191336-A-C | 13079422-A-C | ** | ||||||
15342489-G-A | 13230608-G-A | ** | ||||||
15420173-A-C | 13308293-A-C | ** | ||||||
15433551-C-A | 13321671-C-A | ** | ||||||
15442299-T-A | 13330419-T-A | ** | ||||||
15475010-C-A | 13363130-C-A | ** | ||||||
15504145-C-A | 13392265-C-A | ** | ||||||
15530342-C-A | 13418462-C-A | ** | ||||||
15565462-A-T | 13453582-A-T | ** | ||||||
15626513-G-T | 13514633-G-T | ** | ||||||
15727134-G-T | 13615254-G-T | ** | ||||||
15727141-T-A | 13615261-T-A | ** | ||||||
15776016-G-T | 13664136-G-T | ** | ||||||
15779993-C-A | 13668113-C-A | ** | ||||||
15795501-A-C | 13683621-A-C | ** | ||||||
15923374-G-T | 13811494-G-T | ** | ||||||
16045735-T-A | 13933855-T-A | ** | ||||||
16052269-C-A | 13940389-C-A | ** | ||||||
16084083-G-T | 13972203-G-T | ** | ||||||
16084201-G-T | 13972321-G-T | ** | ||||||
16177158-A-G | 14065278-A-G | ** | ||||||
16235196-A-G | 14123316-A-G | ** | ||||||
16267243-C-A | 14155363-C-A | ** | ||||||
16279126-C-A | 14167246-C-A | ** | ||||||
16279152-C-A | 14167272-C-A | ** | ||||||
16318075-A-T | 14206195-A-T | ** | ||||||
16429631-T-G | 14317751-T-G | ** | ||||||
16431060-C-G | 14319180-C-G | ** | ||||||
16437360-GAA-G | 14325480-GAA-G | ** | ||||||
16489974-G-A | 14378094-G-A | ** | ||||||
16508682-A-T | 14396802-A-T | ** | ||||||
16540955-A-C | 14429075-A-C | ** | ||||||
16607886-G-T | 14496006-G-T | ** | ||||||
16620599-A-G | 14508719-A-G | ** | ||||||
16636599-C-A | 14524719-C-A | ** | ||||||
16701899-T-A | 14590019-T-A | ** | ||||||
16728738-C-A | 14616858-C-A | ** | ||||||
16849567-C-A | 14737687-C-A | ** | ||||||
16863543-A-ATT | 14751663-A-ATT | 14×T | ** | |||||
16881496-G-T | 14769616-G-T | ** | ||||||
16938219-T-A | 14826339-T-A | ** | ||||||
17014297-C-A | 14902417-C-A | ** | ||||||
17019702-C-A | 14907822-C-A | ** | ||||||
17032580-A-C | 14920700-A-C | ** | ||||||
17032584-A-C | 14920704-A-C | ** | ||||||
17032590-A-C | 14920710-A-C | ** | ||||||
17065166-G-T | 14953286-G-T | ** | ||||||
17086919-C-A | 14975039-C-A | ** | ||||||
17115013-T-G | 15003133-T-G | ** | ||||||
17128131-ACCCATAAT-A | 15016251-ACCCATAAT-A | ** | ||||||
17185177-C-A | 15073297-C-A | ** | ||||||
17249320-A-T | 15137440-A-T | ** | ||||||
17301261-A-T | 15189381-A-T | ** | ||||||
17353126-C-A | 15241246-C-A | ** | ||||||
17371019-C-A | 15259139-C-A | ** | ||||||
17548149-T-C | 15436269-T-C | ** | ||||||
17703339-C-A | 15591459-C-A | ** | ||||||
17716752-C-A | 15604872-C-A | ** | ||||||
17783627-C-A | 15671747-C-A | ** | ||||||
18143916-T-A | 16032036-T-A | ** | ||||||
18159641-A-T | 16047761-A-T | ** | ||||||
18247254-C-A | 16135374-C-A | ** | ||||||
18425329-C-A | 16313449-C-A | P6_Gap | ** | |||||
18630612-C-A | 16518732-C-A | ** | ||||||
18630810-A-C | 16518930-A-C | ** | ||||||
18738728-A-T | 16626848-A-T | ** | ||||||
18794038-G-T | 16682158-G-T | ** | ||||||
18930165-C-A | 16818285-C-A | ** | ||||||
18965071-C-A | 16853191-C-A | ** | ||||||
18968576-C-A | 16856696-C-A | ** | ||||||
18995238-A-G | 16883358-A-G | ** | ||||||
19013683-G-T | 16901803-G-T | ** | ||||||
19053545-C-A | 16941665-C-A | ** | ||||||
19137415-C-A | 17025535-C-A | ** | ||||||
19146614-C-A | 17034734-C-A | ** | ||||||
19172929-C-A | 17061049-C-A | ** | ||||||
19310786-C-A | 17198906-C-A | ** | ||||||
19311012-G-A | 17199132-G-A | ** | ||||||
19370200-C-A | 17258320-C-A | ** | ||||||
19394072-T-A | 17282192-T-A | ** | ||||||
19411706-G-GCT | 17299826-G-GCT | ** | ||||||
19416635-T-G | 17304755-T-G | ** | ||||||
19463641-C-A | 17351761-C-A | ** | ||||||
19523565-C-A | 17411685-C-A | ** | ||||||
19531524-A-T | 17419644-A-T | ** | ||||||
19681482-G-T | 17569602-G-T | P5_Prx | ** | |||||
19681488-C-A | 17569608-C-A | P5_Prx | ** | |||||
19681500-T-A | 17569620-T-A | P5_Prx | ** | |||||
19693301-T-TA | 17581421-T-TA | P5_Prx | ** | |||||
19706168-T-A | 17594288-T-A | P5_Prx | ** | |||||
19746891-G-T | 17635011-G-T | P5_Prx | ** | |||||
19852112-C-A | 17740232-C-A | P5_Prx | ** | |||||
19852122-T-A | 17740242-T-A | P5_Prx | ** | |||||
19852132-C-A | 17740252-C-A | P5_Prx | ** | |||||
19852135-G-T | 17740255-G-T | P5_Prx | ** | |||||
19852144-C-A | 17740264-C-A | P5_Prx | ** | |||||
19852158-G-T | 17740278-G-T | P5_Prx | ** | |||||
19920140-C-A | 17808260-C-A | P5_Prx | ** | |||||
20252842-A-C | 18090956-A-C | P5_Dst | ** | |||||
20259608-AACAAACAAAC-A | 18097722-AACAAACAAAC-A | P5_Dst | ** | |||||
20292453-G-GTT | 18130567-G-GTT | P5_Dst | ** | |||||
20407619-G-T | 18245733-G-T | P5_Dst | ** | |||||
20407631-A-T | 18245745-A-T | P5_Dst | ** | |||||
20407646-A-T | 18245760-A-T | P5_Dst | ** | |||||
20407649-C-A | 18245763-C-A | P5_Dst | ** | |||||
20407664-C-A | 18245778-C-A | P5_Dst | ** | |||||
20489497-C-A | 18327611-C-A | FGC80959 | P5_Dst | ** | ||||
20579345-T-TACAC | 18417459-T-TACAC | P5_Dst | 16×AC | ** | ||||
20658941-T-C | 18497055-T-C | P4_Prx | ** | |||||
20659446-T-A | 18497560-T-A | P4_Prx | ** | |||||
20659453-T-A | 18497567-T-A | P4_Prx | ** | |||||
20840456-A-C | 18678570-A-C | P4_Gap | ** | |||||
21042886-A-AGG | 18881000-A-AGG | ** | ||||||
21042890-T-G | 18881004-T-G | ** | ||||||
21042895-T-G | 18881009-T-G | ** | ||||||
21048246-C-A | 18886360-C-A | ** | ||||||
21077313-C-A | 18915427-C-A | ** | ||||||
21162988-C-A | 19001102-C-A | ** | ||||||
21211281-T-A | 19049395-T-A | 13×A | ** | |||||
21265261-G-T | 19103375-G-T | ** | ||||||
21276091-A-T | 19114205-A-T | ** | ||||||
21409431-G-T | 19247545-G-T | ** | ||||||
21443913-T-G | 19282027-T-G | ** | ||||||
21459875-C-A | 19297989-C-A | ** | ||||||
21616096-C-A | 19454210-C-A | ** | ||||||
21698294-A-C | 19536408-A-C | ** | ||||||
21770337-G-T | 19608451-G-T | ** | ||||||
21771560-T-G | 19609674-T-G | ** | ||||||
21946888-G-T | 19785002-G-T | ** | ||||||
21972251-C-A | 19810365-C-A | ** | ||||||
21979884-C-A | 19817998-C-A | ** | ||||||
22063845-T-G | 19901959-T-G | ** | ||||||
22108473-C-A | 19946587-C-A | ** | ||||||
22189177-C-A | 20027291-C-A | ** | ||||||
22199446-C-A | 20037560-C-A | ** | ||||||
22330260-G-A | 20168374-G-A | DYZ19 | ** | |||||
22330275-CCTT-C | 20168389-CCTT-C | DYZ19 | ** | |||||
22330281-T-TTAC | 20168395-T-TTAC | DYZ19 | ** | |||||
22461528-C-A | 20299642-C-A | DYZ19 | ** | |||||
22579488-G-C | 20417602-G-C | ** | ||||||
22614030-T-G | 20452144-T-G | ** | ||||||
22620468-C-A | 20458582-C-A | ** | ||||||
22658428-A-T | 20496542-A-T | ** | ||||||
22842218-C-A | 20680332-C-A | ** | ||||||
22851504-C-A | 20689618-C-A | ** | ||||||
22866125-A-T | 20704239-A-T | ** | ||||||
22987673-G-T | 20825787-G-T | ** | ||||||
23039561-C-A | 20877675-C-A | ** | ||||||
23386523-A-T | 21224637-A-T | ** | ||||||
23438798-C-A | 21276912-C-A | ** | ||||||
23609265-C-A | 21447379-C-A | ** | ||||||
23786380-T-G | 21624494-T-G | ** | ||||||
23786627-T-A | 21624741-T-A | ** | ||||||
23838696-C-A | 21676810-C-A | ** | ||||||
23848602-G-T | 21686716-G-T | ** | ||||||
21752790-G-T | ** | |||||||
21754367-G-T | ** | |||||||
21766236-T-A | ** | |||||||
23952617-G-T | 21806470-G-T | ** | ||||||
23997106-C-A | 21850959-C-A | ** | ||||||
24403329-A-T | 22257182-A-T | ** | ||||||
24922383-G-A | 22776236-G-A | g1 | ** | |||||
24922384-C-G | 22776237-C-G | g1 | ** | |||||
24922385-T-A | 22776238-T-A | g1 | ** | |||||
25059278-T-A | 22913131-T-A | g1 | ** | |||||
25059285-T-A | 22913138-T-A | g1 | ** | |||||
25059341-T-A | 22913194-T-A | g1 | ** | |||||
25241048-A-C | 23094901-A-C | P2_r1 | ** | |||||
25241080-T-G | 23094933-T-G | P2_r1 | ** | |||||
25241097-A-C | 23094950-A-C | P2_r1 | ** | |||||
25815233-T-A | 23669086-T-A | P1_b3 | ** | |||||
25815258-T-A | 23669111-T-A | P1_b3 | ** | |||||
25815262-G-T | 23669115-G-T | P1_b3 | ** | |||||
25815267-G-C | 23669120-G-C | P1_b3 | ** | |||||
26026492-C-A | 23880345-C-A | P1_Y1 | ** | |||||
26107616-A-T | 23961469-A-T | P1_Y1 | ** | |||||
26228670-T-A | 24082523-T-A | P1_Y1 | ** | |||||
26228679-T-C | 24082532-T-C | P1_Y1 | ** | |||||
26228688-T-A | 24082541-T-A | P1_Y1 | ** | |||||
26250232-C-A | 24104085-C-A | P1_Y1 | ** | |||||
26250270-T-A | 24104123-T-A | P1_Y1 | ** | |||||
26250272-C-A | 24104125-C-A | P1_Y1 | ** | |||||
27616538-G-T | 25470391-G-T | P1_Y2 | ** | |||||
27914841-A-C | 25768694-A-C | P1_Y2 | ** | |||||
28024591-A-G | 25878444-A-G | P1_Y2 | ** | |||||
28492411-C-G | 26346264-C-G | ** | ||||||
28497252-C-A | 26351105-C-A | ** | ||||||
28544453-C-A | 26398306-C-A | ** | ||||||
28546866-G-C | 26400719-G-C | ** | ||||||
28556359-A-G | 26410212-A-G | ** | ||||||
28556391-T-G | 26410244-T-G | ** | ||||||
28594592-G-T | 26448445-G-T | ** | ||||||
28609603-T-G | 26463456-T-G | ** | ||||||
28610391-C-A | 26464244-C-A | ** | ||||||
28643902-T-G | 26497755-T-G | ** | ||||||
28763713-C-A | 26617566-C-A | ** | ||||||
28767815-C-A | 26621668-C-A | ** | ||||||
56763541-G-C | ** | |||||||
56763542-A-T | ** | |||||||
56839993-T-A | ** | |||||||
56844556-C-A | ** | |||||||
56847943-C-A | ** | |||||||
56851647-C-A | ** | |||||||
56870938-CT-C | ** | |||||||
36605-C-A | ** | |||||||
8403301-G-A | 8535260-G-A | *** | ||||||
3648793-CA-C | 3780752-CA-C | 9×A | *** | |||||
22245493-A-C | 20083607-A-C | DYZ19 | *** | |||||
27546742-CTTTT-C | 25400595-CTTTT-C | P1_Y2 | 19×T | *** | ||||
15107523-G-C | 12995610-G-C | *** | ||||||
10688116-G-T | *** | |||||||
10808048-C-A | *** | |||||||
9839574-T-A | 10001965-T-A | *** | ||||||
23575913-C-A | 21414027-C-A | FTB1512 | *** | |||||
10911735-A-T | *** | |||||||
4557449-C-A | 4689408-C-A | *** | ||||||
21189700-G-T | 19027814-G-T | *** | ||||||
13315642-C-A | 11159966-C-A | *** | ||||||
9944071-G-T | 10106462-G-T | *** | ||||||
17375519-C-A | 15263639-C-A | *** | ||||||
9993530-C-A | 10155921-C-A | *** | ||||||
10980725-A-T | *** | |||||||
11643776-A-G | DYZ17 | *** | ||||||
13452873-GCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-G | 11297197-GCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-G | 14×CATTC | *** | |||||
13488851-C-A,G | 11333175-C-A,G | *** | ||||||
15211208-G-T | 13099294-G-T | *** | ||||||
8913512-G-T | 9045471-G-T | *** | ||||||
18838651-C-A | 16726771-C-A | *** | ||||||
10934802-C-G | *** | |||||||
13858935-C-A | 11738229-C-A | DYZ17 | *** | |||||
15739711-C-A | 13627831-C-A | *** | ||||||
19505098-C-A | 17393218-C-A | *** | ||||||
3965464-C-A | 4097423-C-A | *** | ||||||
4557454-C-A | 4689413-C-A | *** | ||||||
6513366-GTA-G | 6645325-GTA-G | *** | ||||||
6808307-AAT-A | 6940266-AAT-A | *** | ||||||
7111954-C-A | 7243913-C-A | *** | ||||||
9377434-G-A | 9539825-G-A | *** | ||||||
9524013-ATG-A | 9686404-ATG-A | *** | ||||||
9830351-A-G | 9992742-A-G | *** | ||||||
9839565-AAAAG-C | 10001956-AAAAG-C | *** | ||||||
9944103-A-G | 10106494-A-G | *** | ||||||
10040354-C-A | 10202745-C-A | FT376794 | *** | |||||
10663383-T-A | *** | |||||||
10676843-C-A | *** | |||||||
10764576-AT-A | *** | |||||||
10764580-C-CG | *** | |||||||
10896263-C-A | *** | |||||||
10986374-C-A,G | *** | |||||||
10986388-TC-C,T | *** | |||||||
13496136-C-A | 11340460-C-A | *** | ||||||
11643752-T-G | DYZ17 | *** | ||||||
14316290-T-A | 12195584-T-A | *** | ||||||
14376826-G-T | 12256122-G-T | *** | ||||||
14753265-A-G | 12641334-A-G | *** | ||||||
14825673-CTTCTGCAATTTGAATGTAT-C | 12713740-CTTCTGCAATTTGAATGTAT-C | *** | ||||||
15077905-A-G | 12965995-A-G | BY197303 | *** | |||||
16519316-CAA-C,CAAAA | 14407436-CAA-C,CAAAA | 15×A | *** | |||||
17065204-A-G | 14953324-A-G | *** | ||||||
17238411-C-A | 15126531-C-A | *** | ||||||
17300562-T-C | 15188682-T-C | *** | ||||||
19415138-C-A | 17303258-C-A | *** | ||||||
21206920-C-A | 19045034-C-A | *** | ||||||
21426931-C-A | 19265045-C-A | *** | ||||||
21827606-CAA-C,CA | 19665720-CAA-C,CA | 21×A | *** | |||||
22161014-A-T | 19999128-A-T | *** | ||||||
22536204-C-A | 20374318-C-A | *** | ||||||
23123247-C-A | 20961361-C-A | *** | ||||||
23380570-CAAAAAAAAAAAAAGAAATTAAAG-C | 21218684-CAAAAAAAAAAAAAGAAATTAAAG-C | 13×A | *** | |||||
23391495-AATT-A | 21229609-AATT-A | *** | ||||||
24434633-C-A | 22288486-C-A | *** | ||||||
24466663-C-A | 22320516-C-A | Y112933 | *** | |||||
28694514-G-T | 26548367-G-T | *** | ||||||
56828704-G-T | *** | |||||||
56839129-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.