O'Connor
BigY2: 681326MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 681326 |
---|---|---|---|---|---|---|---|---|
8027931-G-C | 8159890-G-C | BY69462 | Y | Y | + | |||
13896668-A-G | 11775962-A-G | BY91881 | Y | + | ||||
13937770-G-C | 11817064-G-C | BY91970 | Y | Y | + | |||
18126906-CTT-C | 16015026-CTT-C | + | ||||||
23328970-C-T | 21167084-C-T | BY144626 | Y | Y | + | |||
23466012-G-A | 21304126-G-A | BY145477 | Y | Y | + | |||
14379561-TGATAGATA-T | 12258857-TGATAGATA-T | 10×GATA | * | |||||
7863189-A-G | 7995148-A-G | ** | ||||||
17534389-A-T | 15422509-A-T | Z328 | F2518 | ** | ||||
9438096-TCTC-T | 9600487-TCTC-T | ** | ||||||
9836880-TTG-T | 9999271-TTG-T | ** | ||||||
14051714-C-A | 11931008-C-A | ** | ||||||
7246689-T-C | 7378648-T-C | Z13481 | ** | |||||
14445042-G-T | 12324315-G-T | ** | ||||||
16344335-CTCT-C | 14232455-CTCT-C | 5×TCT | ** | |||||
17580817-A-G | 15468937-A-G | M10937 | ** | |||||
17963663-G-GT | 15851783-G-GT | 9×T | ** | |||||
15430643-C-A | 13318763-C-A | ** | ||||||
9962469-C-A | 10124860-C-A | ** | ||||||
28732942-G-T | 26586795-G-T | ** | ||||||
14884698-GAAA-G | 12772764-GAAA-G | 26×A | ** | |||||
13141065-T-C | 10630551-T-C | ** | ||||||
13141029-A-G | 10630515-A-G | ** | ||||||
6784634-C-A | 6916593-C-A | ** | ||||||
11017613-C-G | ** | |||||||
21149553-C-A | 18987667-C-A | ** | ||||||
10826580-A-T | ** | |||||||
10926365-A-C | ** | |||||||
10926378-T-G | ** | |||||||
10926382-A-G | ** | |||||||
10926391-T-C | ** | |||||||
10974009-T-A | ** | |||||||
10847115-A-T | ** | |||||||
25592900-CTA-C | 23446753-CTA-C | P1_gr1 | 12×TA | ** | ||||
10926723-C-T | ** | |||||||
10906238-T-G | ** | |||||||
10808526-C-A | ** | |||||||
13468206-A-C | 11312530-A-C | ** | ||||||
13457642-G-T | 11301966-G-T | ** | ||||||
10630475-A-G | ** | |||||||
10630495-A-T | ** | |||||||
10630506-T-C | ** | |||||||
10630511-T-C | ** | |||||||
10630530-A-T | ** | |||||||
10630532-T-C | ** | |||||||
10974034-T-C | ** | |||||||
13457641-C-CG | 11301965-C-CG | ** | ||||||
18628150-C-A | 16516270-C-A | ** | ||||||
21170316-G-T | 19008430-G-T | ** | ||||||
10921123-T-C | FT436611 | ** | ||||||
5459361-C-A | 5591320-C-A | ** | ||||||
19258907-C-A | 17147027-C-A | ** | ||||||
22113187-CAAAAA-C | 19951301-CAAAAA-C | 23×A | ** | |||||
13468210-C-T | 11312534-C-T | ** | ||||||
10906243-C-T | ** | |||||||
10906205-C-T | ** | |||||||
10906245-C-A | ** | |||||||
10754772-T-TTCCTCTTTAC | ** | |||||||
10754782-TTTTAC-T | ** | |||||||
10759138-C-A | ** | |||||||
10796443-T-C | FT431592 | ** | ||||||
10796501-A-C | ** | |||||||
10796502-T-A | ** | |||||||
10796516-A-C | ** | |||||||
21149582-G-GTTT | 18987696-G-GTTT | 27×T | ** | |||||
10761113-C-T | FT430027 | ** | ||||||
11005484-A-T | ** | |||||||
8261185-G-GA | 8393144-G-GA | 9×A | ** | |||||
10684931-C-G | ** | |||||||
11027057-T-A | ** | |||||||
21220328-C-A | 19058442-C-A | ** | ||||||
18804064-C-A | 16692184-C-A | ** | ||||||
10764146-G-C | ** | |||||||
10764153-G-T | ** | |||||||
26099739-A-T | 23953592-A-T | P1_Y1 | ** | |||||
10990989-C-A | ** | |||||||
22723404-G-T | 20561518-G-T | 12×A | ** | |||||
27810267-AGAAG-A | 25664120-AGAAG-A | P1_Y2 | ** | |||||
6262642-AC-A | 6394601-AC-A | IR3_Dst | ** | |||||
10798204-A-C | ** | |||||||
16605163-C-A | 14493283-C-A | ** | ||||||
19123180-C-A | 17011300-C-A | ** | ||||||
10982480-C-A | ** | |||||||
15650430-C-A | 13538550-C-A | ** | ||||||
10958205-G-T | ** | |||||||
10828731-T-A | ** | |||||||
13489034-G-T | 11333358-G-T | ** | ||||||
23306507-C-A | 21144621-C-A | ** | ||||||
5022051-C-A | 5154010-C-A | ** | ||||||
11663474-C-A | ** | |||||||
13604355-C-A | 11448679-C-A | ** | ||||||
7098101-CA-C | 7230060-CA-C | ** | ||||||
10831562-A-T | ** | |||||||
10999861-T-A | ** | |||||||
14761169-C-A | 12649238-C-A | ** | ||||||
16091253-C-A | 13979373-C-A | ** | ||||||
13643037-C-A | 11487361-C-A | ** | ||||||
14823722-C-A | 12711789-C-A | ** | ||||||
14376520-C-A | 12255816-C-A | ** | ||||||
5557461-C-A | 5689420-C-A | ** | ||||||
10693675-A-C | ** | |||||||
18190819-C-A | 16078939-C-A | ** | ||||||
20579339-A-T | 18417453-A-T | P5_Dst | ** | |||||
23277241-C-A | 21115355-C-A | ** | ||||||
9441609-C-A | 9604000-C-A | ** | ||||||
10847105-C-A | ** | |||||||
6790324-C-A | 6922283-C-A | ** | ||||||
10798244-T-G | ** | |||||||
10798245-C-T | ** | |||||||
2669057-C-A | 2801016-C-A | ** | ||||||
2684780-C-A | 2816739-C-A | ** | ||||||
2728181-G-C | 2860140-G-C | ** | ||||||
2901435-C-A | 3033394-C-A | ** | ||||||
2946954-C-A | 3078913-C-A | ** | ||||||
3061097-C-A | 3193056-C-A | ** | ||||||
3249386-C-A | 3381345-C-A | ** | ||||||
3329543-G-T | 3461502-G-T | ** | ||||||
3366772-A-G | 3498731-A-G | ** | ||||||
3684670-G-T | 3816629-G-T | ** | ||||||
3759339-T-G | 3891298-T-G | ** | ||||||
3991780-C-A | 4123739-C-A | ** | ||||||
4165993-G-T | 4297952-G-T | ** | ||||||
4166031-G-T | 4297990-G-T | ** | ||||||
4215429-G-T | 4347388-G-T | ** | ||||||
4576235-G-T | 4708194-G-T | ** | ||||||
4874835-T-G | 5006794-T-G | ** | ||||||
4961164-G-GA | 5093123-G-GA | 9×A | ** | |||||
5698756-G-A | 5830715-G-A | ** | ||||||
5782276-C-A | 5914235-C-A | ** | ||||||
5810188-C-T | 5942147-C-T | ** | ||||||
5810191-T-C | 5942150-T-C | ** | ||||||
5810213-G-A | 5942172-G-A | ** | ||||||
5810215-A-G | 5942174-A-G | ** | ||||||
5851922-C-A | 5983881-C-A | ** | ||||||
5865397-C-A | 5997356-C-A | ** | ||||||
5895677-G-T | 6027636-G-T | ** | ||||||
6003160-C-A | 6135119-C-A | ** | ||||||
6063529-C-A | 6195488-C-A | ** | ||||||
6090821-C-G | 6222780-C-G | ** | ||||||
6298031-T-TC | 6429990-T-TC | IR3_Dst | ** | |||||
6305855-CA-C | 6437814-CA-C | IR3_Dst | ** | |||||
6358694-C-A | 6490653-C-A | ** | ||||||
6369000-G-T | 6500959-G-T | ** | ||||||
6505544-T-G | 6637503-T-G | ** | ||||||
6693777-C-A | 6825736-C-A | ** | ||||||
6707469-C-A | 6839428-C-A | ** | ||||||
6829313-C-A | 6961272-C-A | ** | ||||||
6839646-A-C | 6971605-A-C | ** | ||||||
6878858-C-A | 7010817-C-A | ** | ||||||
6926512-C-A | 7058471-C-A | ** | ||||||
6971781-C-A | 7103740-C-A | ** | ||||||
6989138-AC-A | 7121097-AC-A | ** | ||||||
7131175-TC-T | 7263134-TC-T | ** | ||||||
7157123-G-T | 7289082-G-T | ** | ||||||
7269930-C-A | 7401889-C-A | Z44413 | ** | |||||
7298835-G-T | 7430794-G-T | ** | ||||||
7311186-C-A | 7443145-C-A | ** | ||||||
7320098-C-A | 7452057-C-A | ** | ||||||
7334105-T-C | 7466064-T-C | ** | ||||||
7360848-A-C | 7492807-A-C | ** | ||||||
7362127-C-A | 7494086-C-A | ** | ||||||
7366356-C-A | 7498315-C-A | ** | ||||||
7402555-T-C | 7534514-T-C | ** | ||||||
7562236-G-T | 7694195-G-T | ** | ||||||
7764357-C-A | 7896316-C-A | ** | ||||||
7767586-C-A | 7899545-C-A | ** | ||||||
7858408-C-A | 7990367-C-A | ** | ||||||
8156026-C-A | 8287985-C-A | ** | ||||||
8261207-G-T | 8393166-G-T | ** | ||||||
8345885-C-A | 8477844-C-A | ** | ||||||
8388041-C-A | 8520000-C-A | ** | ||||||
8588641-C-A | 8720600-C-A | ** | ||||||
8668218-C-A | 8800177-C-A | ** | ||||||
8735674-G-A | 8867633-G-A | ** | ||||||
8742850-C-A | 8874809-C-A | ** | ||||||
8786025-T-A | 8917984-T-A | ** | ||||||
8786038-G-T | 8917997-G-T | ** | ||||||
8842515-C-A | 8974474-C-A | ** | ||||||
8843699-T-G | 8975658-T-G | ** | ||||||
8846502-G-T | 8978461-G-T | ** | ||||||
9108182-A-T | ** | |||||||
9124333-G-T | ** | |||||||
9139782-C-CT | 9302173-C-CT | 8×T | ** | |||||
9439493-C-A | 9601884-C-A | ** | ||||||
9765870-G-T | 9928261-G-T | ** | ||||||
9798088-G-T | 9960479-G-T | ** | ||||||
9798117-G-T | 9960508-G-T | ** | ||||||
9892555-G-A | 10054946-G-A | ** | ||||||
9929951-G-A | 10092342-G-A | ** | ||||||
9955313-C-A | 10117704-C-A | ** | ||||||
9979968-C-A | 10142359-C-A | ** | ||||||
10010643-G-T | 10173034-G-T | ** | ||||||
10050683-C-T | 10213074-C-T | ** | ||||||
10050694-A-T | 10213085-A-T | ** | ||||||
10057149-G-T | 10219540-G-T | ** | ||||||
10057151-C-T | 10219542-C-T | ** | ||||||
10057159-G-A | 10219550-G-A | ** | ||||||
10057162-C-G | 10219553-C-G | ** | ||||||
10057163-A-ACT | 10219554-A-ACT | ** | ||||||
10060594-C-A | 10222985-C-A | ** | ||||||
10617737-C-A | ** | |||||||
10647982-AACTCC-A | ** | |||||||
10652513-C-A | ** | |||||||
10652516-T-G | ** | |||||||
10652532-G-C | ** | |||||||
10653065-C-A | ** | |||||||
10661215-T-C | ** | |||||||
10663369-C-A | ** | |||||||
10672943-T-TTC | ** | |||||||
10686685-C-A | ** | |||||||
10689925-C-A | ** | |||||||
10751034-C-G | ** | |||||||
10751039-C-A | ** | |||||||
10751051-T-A | ** | |||||||
10751061-T-C | ** | |||||||
10751063-C-A | ** | |||||||
10751064-C-A | ** | |||||||
10751080-T-C | ** | |||||||
10756988-C-A | ** | |||||||
10758901-A-T | ** | |||||||
10775320-G-T | ** | |||||||
10775345-C-A | ** | |||||||
10778852-T-C | ** | |||||||
10781428-G-T | ** | |||||||
10784329-T-C | ** | |||||||
10784535-C-A | ** | |||||||
10794965-C-A | ** | |||||||
10824599-C-A | ** | |||||||
10827203-C-A | ** | |||||||
10828307-C-A | ** | |||||||
10834883-T-C | ** | |||||||
10835156-C-A | ** | |||||||
10836700-C-A | ** | |||||||
10857022-C-A | ** | |||||||
10861857-CTGTGA-C | ** | |||||||
10877760-C-A | ** | |||||||
10889263-C-A | ** | |||||||
10889266-G-A | ** | |||||||
10889270-T-C | ** | |||||||
10889282-C-CTGCTT | ** | |||||||
10889297-C-G | ** | |||||||
10890270-C-A | ** | |||||||
10911739-A-T | ** | |||||||
10911758-G-T | ** | |||||||
10914111-G-T | ** | |||||||
10921126-C-CA | ** | |||||||
10921128-T-TGCCC | ** | |||||||
10921728-G-T | ** | |||||||
10925473-C-A | ** | |||||||
10927870-A-AGTCCG | ** | |||||||
10937471-A-T | ** | |||||||
10937486-A-T | ** | |||||||
10940760-C-A | ** | |||||||
10940774-T-A | ** | |||||||
10940776-T-A | ** | |||||||
10940779-T-A | ** | |||||||
10940783-C-A | ** | |||||||
10940784-T-A | ** | |||||||
10941637-C-A | ** | |||||||
10946815-T-C | ** | |||||||
10952038-C-A | ** | |||||||
10956734-C-A | ** | |||||||
10977105-T-A | ** | |||||||
10980213-C-A | ** | |||||||
10988593-TTCATTC-T | ** | |||||||
10991207-C-T | ** | |||||||
10991244-C-CTATTCCGTAT | ** | |||||||
11000797-C-A | ** | |||||||
11000823-C-A | FT393239 | ** | ||||||
11003354-C-A | ** | |||||||
11005468-CATTCCACT-C | ** | |||||||
11005478-CAT-C | ** | |||||||
11005491-G-C | ** | |||||||
11022400-T-C | ** | |||||||
11022424-A-T | ** | |||||||
11027045-A-C | ** | |||||||
13199356-C-A | 11043680-C-A | FT440616 | ** | |||||
13287319-C-A | 11131643-C-A | ** | ||||||
13326628-C-A | 11170952-C-A | ** | ||||||
13402548-C-A | 11246872-C-A | ** | ||||||
13429900-G-T | 11274224-G-T | ** | ||||||
13442592-C-A | 11286916-C-A | ** | ||||||
13445960-T-A | 11290284-T-A | ** | ||||||
13457633-A-T | 11301957-A-T | ** | ||||||
13457637-C-A | 11301961-C-A | ** | ||||||
13489004-G-T | 11333328-G-T | ** | ||||||
13544982-G-T | 11389306-G-T | ** | ||||||
13624319-C-A | 11468643-C-A | ** | ||||||
13726331-G-T | 11570655-G-T | ** | ||||||
13726352-C-A | 11570676-C-A | ** | ||||||
13859887-A-T | 11739181-A-T | ** | ||||||
13927930-C-A | 11807224-C-A | ** | ||||||
13938049-C-A | 11817343-C-A | ** | ||||||
13945325-C-A | 11824619-C-A | ** | ||||||
13976909-G-T | 11856203-G-T | ** | ||||||
13976917-G-T | 11856211-G-T | ** | ||||||
14066044-C-A | 11945338-C-A | ** | ||||||
14068484-C-A | 11947778-C-A | ** | ||||||
14099733-C-A | 11979027-C-A | ** | ||||||
14124156-C-A | 12003450-C-A | ** | ||||||
14220947-T-G | 12100241-T-G | ** | ||||||
14294227-A-T | 12173521-A-T | ** | ||||||
14310461-C-A | 12189755-C-A | ** | ||||||
14376157-C-A | 12255453-C-A | ** | ||||||
14377039-C-T | 12256335-C-T | ** | ||||||
14429259-C-A | 12308534-C-A | ** | ||||||
14540484-T-G | 12428685-T-G | ** | ||||||
14544011-C-A | 12432212-C-A | ** | ||||||
14551601-A-C | 12439802-A-C | ** | ||||||
14563897-C-A | 12452097-C-A | ** | ||||||
14563927-A-G | 12452127-A-G | ** | ||||||
14581155-A-C | 12469355-A-C | ** | ||||||
14581157-A-T | 12469357-A-T | ** | ||||||
14581180-A-T | 12469380-A-T | ** | ||||||
14766564-C-A | 12654633-C-A | ** | ||||||
14779517-T-G | 12667587-T-G | ** | ||||||
14805963-A-T | 12694034-A-T | ** | ||||||
14806029-C-A | 12694100-C-A | ** | ||||||
14806139-C-A | 12694210-C-A | ** | ||||||
14884748-C-A | 12772814-C-A | ** | ||||||
14934977-T-A | 12823042-T-A | ** | ||||||
15064922-C-A | 12953014-C-A | ** | ||||||
15074578-T-G | 12962668-T-G | ** | ||||||
15113671-C-A | 13001758-C-A | ** | ||||||
15212142-C-A | 13100228-C-A | ** | ||||||
15212190-A-G | 13100276-A-G | ** | ||||||
15249929-T-C | 13138015-T-C | ** | ||||||
15289970-C-A | 13178069-C-A | ** | ||||||
15332220-C-A | 13220338-C-A | ** | ||||||
15433510-C-A | 13321630-C-A | ** | ||||||
15491859-C-T | 13379979-C-T | ** | ||||||
15503277-C-A | 13391397-C-A | ** | ||||||
15515201-A-C | 13403321-A-C | ** | ||||||
15686816-C-A | 13574936-C-A | ** | ||||||
15732097-C-A | 13620217-C-A | ** | ||||||
15764188-C-A | 13652308-C-A | ** | ||||||
15818935-C-A | 13707055-C-A | ** | ||||||
15821460-C-A | 13709580-C-A | ** | ||||||
15915158-T-G | 13803278-T-G | ** | ||||||
15946863-C-A | 13834983-C-A | ** | ||||||
15980273-C-A | 13868393-C-A | ** | ||||||
16006202-G-A | 13894322-G-A | ** | ||||||
16058673-C-A | 13946793-C-A | ** | ||||||
16093033-C-A | 13981153-C-A | ** | ||||||
16213720-T-C | 14101840-T-C | ** | ||||||
16279559-C-A | 14167679-C-A | ** | ||||||
16322248-G-T | 14210368-G-T | ** | ||||||
16324178-A-C | 14212298-A-C | ** | ||||||
16342200-C-A | 14230320-C-A | ** | ||||||
16428551-G-A | 14316671-G-A | ** | ||||||
16451641-C-A | 14339761-C-A | ** | ||||||
16462417-C-A | 14350537-C-A | ** | ||||||
16516423-G-T | 14404543-G-T | ** | ||||||
16559987-C-A | 14448107-C-A | ** | ||||||
16666171-T-C | 14554291-T-C | ** | ||||||
16701422-C-A | 14589542-C-A | ** | ||||||
16789682-C-A | 14677802-C-A | ** | ||||||
16845230-C-A | 14733350-C-A | ** | ||||||
16970316-C-A | 14858436-C-A | ** | ||||||
16971206-C-A | 14859326-C-A | ** | ||||||
17032713-C-A | 14920833-C-A | ** | ||||||
17052667-C-A | 14940787-C-A | ** | ||||||
17119080-C-A | 15007200-C-A | ** | ||||||
17199486-C-A | 15087606-C-A | ** | ||||||
17242428-C-A | 15130548-C-A | ** | ||||||
17277364-C-A | 15165484-C-A | ** | ||||||
17370795-C-A | 15258915-C-A | ** | ||||||
17420421-G-T | 15308541-G-T | ** | ||||||
17469710-A-G | 15357830-A-G | ** | ||||||
17481104-A-T | 15369224-A-T | ** | ||||||
17716654-T-C | 15604774-T-C | ** | ||||||
17804354-C-T | 15692474-C-T | ** | ||||||
17840058-T-G | 15728178-T-G | ** | ||||||
17875472-C-A | 15763592-C-A | ** | ||||||
18021248-G-T | 15909368-G-T | ** | ||||||
18177115-C-A | 16065235-C-A | ** | ||||||
18297476-C-A | 16185596-C-A | P6_Prx | ** | |||||
18337031-G-T | 16225151-G-T | P6_Prx | ** | |||||
18345731-G-T | 16233851-G-T | P6_Prx | ** | |||||
18569866-T-C | 16457986-T-C | ** | ||||||
18614055-G-A | 16502175-G-A | ** | ||||||
18616001-C-A | 16504121-C-A | ** | ||||||
18628158-C-A | 16516278-C-A | ** | ||||||
18636613-T-C | 16524733-T-C | ** | ||||||
18662271-C-G | 16550391-C-G | ** | ||||||
18717670-T-G | 16605790-T-G | ** | ||||||
18718989-C-A | 16607109-C-A | ** | ||||||
18726560-T-A | 16614680-T-A | ** | ||||||
18792843-C-A | 16680963-C-A | ** | ||||||
18848483-G-T | 16736603-G-T | ** | ||||||
18950525-C-A | 16838645-C-A | ** | ||||||
18963482-G-A | 16851602-G-A | ** | ||||||
18993568-C-A | 16881688-C-A | ** | ||||||
19060773-C-A | 16948893-C-A | ** | ||||||
19071501-T-G | 16959621-T-G | ** | ||||||
19071502-T-G | 16959622-T-G | ** | ||||||
19303606-A-G | 17191726-A-G | ** | ||||||
19377594-T-A | 17265714-T-A | ** | ||||||
19388456-T-C | 17276576-T-C | ** | ||||||
19409925-C-A | 17298045-C-A | ** | ||||||
19439614-C-A | 17327734-C-A | ** | ||||||
19459398-C-T | 17347518-C-T | ** | ||||||
19535555-C-A | 17423675-C-A | ** | ||||||
19558130-C-A | 17446250-C-A | ** | ||||||
19794820-G-T | 17682940-G-T | P5_Prx | ** | |||||
20027970-A-T | 17916090-A-T | P5_Prx | ** | |||||
20579336-C-A | 18417450-C-A | P5_Dst | ** | |||||
20629016-C-A | 18467130-C-A | P4_Prx | ** | |||||
20993660-C-A | 18831774-C-A | P4_Dst | ** | |||||
20993663-G-T | 18831777-G-T | P4_Dst | ** | |||||
21095111-G-T | 18933225-G-T | ** | ||||||
21104758-AAG-A | 18942872-AAG-A | ** | ||||||
21105575-T-C | 18943689-T-C | ** | ||||||
21140963-C-T | 18979077-C-T | Y8606 | ** | |||||
21170319-G-T | 19008433-G-T | FT338936 | 14×T | ** | ||||
21187993-A-C | 19026107-A-C | ** | ||||||
21200870-A-T | 19038984-A-T | ** | ||||||
21207751-A-G | 19045865-A-G | ** | ||||||
21222079-C-A | 19060193-C-A | ** | ||||||
21222132-C-A | 19060246-C-A | ** | ||||||
21235165-C-A | 19073279-C-A | ** | ||||||
21394498-G-T | 19232612-G-T | ** | ||||||
21472384-C-A | 19310498-C-A | ** | ||||||
21521580-C-A | 19359694-C-A | ** | ||||||
21583855-C-A | 19421969-C-A | ** | ||||||
21635059-G-T | 19473173-G-T | ** | ||||||
21635114-G-T | 19473228-G-T | ** | ||||||
21658583-A-C | 19496697-A-C | ** | ||||||
21693986-C-A | 19532100-C-A | ** | ||||||
21828046-C-A | 19666160-C-A | ** | ||||||
21874055-C-A | 19712169-C-A | ** | ||||||
21909473-C-A | 19747587-C-A | ** | ||||||
21923881-G-A | 19761995-G-A | ** | ||||||
22037324-A-G | 19875438-A-G | ** | ||||||
22076248-C-A | 19914362-C-A | ** | ||||||
22166646-C-A | 20004760-C-A | ** | ||||||
22167224-CAAAAAA-C | 20005338-CAAAAAA-C | 29×A | ** | |||||
22167853-G-T | 20005967-G-T | ** | ||||||
22193262-G-T | 20031376-G-T | ** | ||||||
22514477-C-A | 20352591-C-A | ** | ||||||
22541108-C-A | 20379222-C-A | ** | ||||||
22550023-C-A | 20388137-C-A | ** | ||||||
22587190-C-A | 20425304-C-A | ** | ||||||
22600344-A-T | 20438458-A-T | ** | ||||||
22729331-G-T | 20567445-G-T | ** | ||||||
22800388-C-A | 20638502-C-A | ** | ||||||
22865313-C-A | 20703427-C-A | ** | ||||||
22865314-C-A | 20703428-C-A | ** | ||||||
23018993-G-T | 20857107-G-T | ** | ||||||
23065732-G-A | 20903846-G-A | ** | ||||||
23429925-C-A | 21268039-C-A | ** | ||||||
23463234-C-T | 21301348-C-T | ** | ||||||
23495605-C-A | 21333719-C-A | ** | ||||||
23509211-G-T | 21347325-G-T | ** | ||||||
23569161-T-C | 21407275-T-C | ** | ||||||
23579351-T-C | 21417465-T-C | ** | ||||||
25937816-C-A | 23791669-C-A | P1_Y1 | ** | |||||
27637233-T-A | 25491086-T-A | P1_Y2 | ** | |||||
27647597-C-A | 25501450-C-A | P1_Y2 | ** | |||||
28090341-T-A | 25944194-T-A | P1_Y2 | ** | |||||
28332432-G-T | 26186285-G-T | P1_b4 | ** | |||||
28493739-C-A | 26347592-C-A | ** | ||||||
28516252-G-T | 26370105-G-T | ** | ||||||
28529805-C-A | 26383658-C-A | ** | ||||||
28547314-C-A | 26401167-C-A | ** | ||||||
28719455-C-A | 26573308-C-A | ** | ||||||
56826066-A-G | ** | |||||||
56826070-C-A | ** | |||||||
56841275-G-A | ** | |||||||
56850750-G-T | ** | |||||||
56868053-G-T | ** | |||||||
24174-G-C | ** | |||||||
24177-C-T | ** | |||||||
24192-A-G | ** | |||||||
24196-T-C | ** | |||||||
24206-C-T | ** | |||||||
21642856-ATGTG-A | 19480970-ATGTG-A | 16×TG | *** | |||||
23965360-CT-C | 21819213-CT-C | 9×T | *** | |||||
5817232-G-A | 5949191-G-A | FT325157 | *** | |||||
19461366-C-A | 17349486-C-A | CTS10449 M3381 PF3273 | *** | |||||
2686629-A-AT | 2818588-A-AT | 10×T | *** | |||||
21487760-C-CT | 19325874-C-CT | 10×T | *** | |||||
15495460-CAAA-C,CAA | 13383580-CAAA-C,CAA | 16×A | *** | |||||
15479942-CTTTTT-C | 13368062-CTTTTT-C | 21×T | *** | |||||
10965560-A-T | BY84050 | *** | ||||||
10965579-C-T | *** | |||||||
17186726-TAAAA-T,TAAA | 15074846-TAAAA-T,TAAA | 19×A | *** | |||||
17867901-CTT-C | 15756021-CTT-C | 14×T | *** | |||||
28661513-ATT-A | 26515366-ATT-A | 13×T | *** | |||||
10676869-C-T | *** | |||||||
10678615-T-C | *** | |||||||
10678630-T-TTGTAC | *** | |||||||
11022113-C-A | *** | |||||||
16702014-G-T | 14590134-G-T | *** | ||||||
8398840-CAAA-C,CAA | 8530799-CAAA-C,CAA | 17×A | *** | |||||
10808031-C-T | *** | |||||||
10965568-C-T | *** | |||||||
7561887-A-AT | 7693846-A-AT | 10×T | *** | |||||
19095270-C-A | 16983390-C-A | *** | ||||||
6144730-G-T | 6276689-G-T | IR3_Dst | *** | |||||
56831044-T-G | *** | |||||||
4179157-C-A | 4311116-C-A | *** | ||||||
11022898-T-A,G | *** | |||||||
23528505-C-A | 21366619-C-A | *** | ||||||
56827599-G-T | *** | |||||||
2830981-C-T | 2962940-C-T | *** | ||||||
2859301-C-A | 2991260-C-A | *** | ||||||
4919129-C-T | 5051088-C-T | *** | ||||||
6144707-C-T | 6276666-C-T | IR3_Dst | *** | |||||
6363633-C-A | 6495592-C-A | *** | ||||||
6398588-C-A | 6530547-C-A | *** | ||||||
6875063-G-T | 7007022-G-T | *** | ||||||
6983637-C-A | 7115596-C-A | *** | ||||||
7082529-C-A | 7214488-C-A | *** | ||||||
7111251-C-A | 7243210-C-A | *** | ||||||
7181615-C-A | 7313574-C-A | *** | ||||||
7628209-C-A | 7760168-C-A | *** | ||||||
7648945-C-A | 7780904-C-A | *** | ||||||
7775589-C-A | 7907548-C-A | *** | ||||||
7825617-C-A | 7957576-C-A | *** | ||||||
7986853-C-A | 8118812-C-A | *** | ||||||
8088173-C-CAAA | 8220132-C-CAAA | 16×A | *** | |||||
8095919-C-A | 8227878-C-A | *** | ||||||
8549060-C-A | 8681019-C-A | *** | ||||||
8555765-C-A | 8687724-C-A | *** | ||||||
8718952-C-A | 8850911-C-A | *** | ||||||
8719198-C-A | 8851157-C-A | *** | ||||||
8773858-CA-C,CAA | 8905817-CA-C,CAA | 16×A | *** | |||||
9138342-C-A | 9300733-C-A | *** | ||||||
9435401-C-T | 9597792-C-T | *** | ||||||
9524191-G-T | 9686582-G-T | FGC9016 | *** | |||||
9805395-T-C | 9967786-T-C | *** | ||||||
9859697-C-A | 10022088-C-A | *** | ||||||
9935054-C-A | 10097445-C-A | *** | ||||||
9940458-C-A | 10102849-C-A | *** | ||||||
9973815-C-A | 10136206-C-A | *** | ||||||
10020080-C-A | 10182471-C-A | *** | ||||||
10022575-C-A | 10184966-C-A | *** | ||||||
10678609-AT-A | *** | |||||||
10816269-A-C | *** | |||||||
10816282-A-C | *** | |||||||
10830151-C-T | *** | |||||||
10847869-C-A | *** | |||||||
10933565-C-A | *** | |||||||
11022974-A-C,C | *** | |||||||
13458666-C-T | 11302990-C-T | *** | ||||||
13486813-C-G,T | 11331137-C-G,T | *** | ||||||
13642477-C-A | 11486801-C-A | *** | ||||||
13721878-T-C | 11566202-T-C | *** | ||||||
13829153-C-A | 11708447-C-A | *** | ||||||
13928511-C-A | 11807805-C-A | *** | ||||||
13938869-C-A | 11818163-C-A | *** | ||||||
13939017-A-G | 11818311-A-G | *** | ||||||
14430252-C-A | 12309525-C-A | *** | ||||||
14504536-C-A | 12392741-C-A | *** | ||||||
14547115-C-A | 12435316-C-A | *** | ||||||
14610356-C-A | 12498558-C-A | *** | ||||||
14753899-C-A | 12641968-C-A | *** | ||||||
14766406-CTT-C,CT | 12654475-CTT-C,CT | 13×T | *** | |||||
14816753-A-G | 12704824-A-G | *** | ||||||
14831756-T-TTC | 12719823-T-TTC | *** | ||||||
14845208-C-T | 12733274-C-T | *** | ||||||
14867046-C-A | 12755116-C-A | *** | ||||||
15007104-T-TA | 12895189-T-TA | 11×A | *** | |||||
15163300-AT-A,ATT | 13051386-AT-A,ATT | 15×T | *** | |||||
13203566-CAAA-C,CAAAA | 19×A | *** | ||||||
15384067-C-A | 13272187-C-A | *** | ||||||
15434409-C-A | 13322529-C-A | *** | ||||||
15770896-C-A | 13659016-C-A | *** | ||||||
15819875-A-T | 13707995-A-T | *** | ||||||
15895494-C-A | 13783614-C-A | *** | ||||||
15948982-C-A | 13837102-C-A | *** | ||||||
15994034-C-CTT | 13882154-C-CTT | 10×T | *** | |||||
16293972-C-A | 14182092-C-A | *** | ||||||
16834155-A-G | 14722275-A-G | *** | ||||||
16988012-C-A | 14876132-C-A | *** | ||||||
17201964-T-C | 15090084-T-C | *** | ||||||
17555712-C-A | 15443832-C-A | *** | ||||||
17597639-C-A | 15485759-C-A | *** | ||||||
17634205-C-A | 15522325-C-A | *** | ||||||
17714353-C-A | 15602473-C-A | *** | ||||||
17878317-C-A | 15766437-C-A | *** | ||||||
18068797-C-A | 15956917-C-A | *** | ||||||
18173866-C-A | 16061986-C-A | *** | ||||||
18268134-C-A | 16156254-C-A | *** | ||||||
18635343-C-A | 16523463-C-A | *** | ||||||
18687295-GT-G | 16575415-GT-G | *** | ||||||
18787273-C-A | 16675393-C-A | *** | ||||||
18806044-CTT-C,CTTT | 16694164-CTT-C,CTTT | 19×T | *** | |||||
19160618-C-A | 17048738-C-A | *** | ||||||
19340704-C-A | 17228824-C-A | *** | ||||||
19395551-C-A | 17283671-C-A | *** | ||||||
21082183-G-T | 18920297-G-T | *** | ||||||
21133822-C-A | 18971936-C-A | *** | ||||||
21253419-C-A | 19091533-C-A | *** | ||||||
21362695-C-A | 19200809-C-A | *** | ||||||
21425131-C-A | 19263245-C-A | *** | ||||||
21457525-G-T | 19295639-G-T | *** | ||||||
21596614-C-A | 19434728-C-A | *** | ||||||
21700809-C-A | 19538923-C-A | *** | ||||||
22100356-G-A | 19938470-G-A | *** | ||||||
22514674-C-A | 20352788-C-A | *** | ||||||
22578688-C-A | 20416802-C-A | *** | ||||||
22904446-C-A | 20742560-C-A | *** | ||||||
23126815-C-A | 20964929-C-A | *** | ||||||
23146191-C-A | 20984305-C-A | *** | ||||||
23148746-CAAAA-C | 20986860-CAAAA-C | 14×A | *** | |||||
23391436-C-A | 21229550-C-A | *** | ||||||
23481885-G-T | 21319999-G-T | FT306799 | *** | |||||
23543000-C-A | 21381114-C-A | *** | ||||||
23562628-ATTAAT-A | 21400742-ATTAAT-A | *** | ||||||
23575782-C-A | 21413896-C-A | *** | ||||||
24429187-C-A | 22283040-C-A | *** | ||||||
28588978-T-C | 26442831-T-C | *** | ||||||
56828901-ATCCAT-A | 4×TCCAT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.