Martin
BigY2: 35655MDKA Birth: France
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 35655 |
---|---|---|---|---|---|---|---|---|
18321209-G-A | 16209329-G-A | FT157725 | P6_Prx | A* | ||||
6294474-A-G | 6426433-A-G | IR3_Dst | A* | |||||
13449825-C-A | 11294149-C-A | A* | ||||||
13687801-G-T | 11532125-G-T | DYZ17 | A* | |||||
19773992-G-A | 17662112-G-A | P5_Prx | A* | |||||
19800747-C-A | 17688867-C-A | P5_Prx | A* | |||||
19812254-C-G | 17700374-C-G | P5_Prx | A* | |||||
25994829-A-T | 23848682-A-T | P1_Y1 | A* | |||||
13828127-G-A | 11707421-G-A | BY90799 | DYZ17 | + | ||||
7943154-T-A | 8075113-T-A | BY68944 | Y | Y | + | |||
8662418-A-G | 8794377-A-G | BY75032 | Y | Y | + | |||
9376993-G-A | 9539384-G-A | BY78902 | Y | + | ||||
9454845-C-G | 9617236-C-G | BY79508 | Y | Y | + | |||
9468119-C-G | 9630510-C-G | BY79632 | + | |||||
9856098-T-C | 10018489-T-C | BY81495 | Y | Y | + | |||
14893062-G-A | 12781128-G-A | BY98305 | Y | Y | + | |||
14914315-G-T | 12802382-G-T | BY98448 | Y | Y | + | |||
15484802-T-C | 13372922-T-C | BY101892 | Y | Y | + | |||
15536814-T-C | 13424934-T-C | BY102339 | Y | Y | + | |||
15559445-AAAAT-A | 13447565-AAAAT-A | + | ||||||
15924294-G-A | 13812414-G-A | BY104914 | Y | Y | + | |||
16716313-G-A | 14604433-G-A | BY109598 | Y | Y | + | |||
18065249-TC-T | 15953369-TC-T | + | ||||||
18102896-C-T | 15991016-C-T | BY120030 | Y | Y | + | |||
18419407-C-T | 16307527-C-T | BY121865 | P6_Gap | + | ||||
18895353-T-G | 16783473-T-G | BY124600 | Y | Y | + | |||
21529891-A-T | 19368005-A-T | BY133617 | Y | Y | + | |||
22457548-C-T | 20295662-C-T | BY219938 | DYZ19 | + | ||||
22466189-A-T | 20304303-A-T | BY221683 | DYZ19 | + | ||||
22466903-A-T | 20305017-A-T | BY221805 | DYZ19 | + | ||||
22475784-G-A | 20313898-G-A | BY223426 | DYZ19 | + | ||||
22596184-A-C | 20434298-A-C | BY139377 | Y | Y | + | |||
22961907-G-A | 20800021-G-A | BY142069 | Y | Y | + | |||
23239506-G-A | 21077620-G-A | BY143949 | Y | + | ||||
23729554-T-C | 21567668-T-C | BY147139 | + | |||||
23745565-C-A | 21583679-C-A | BY147320 | + | |||||
28782438-A-G | 26636291-A-G | BY151192 | + | |||||
13452849-C-T | 11297173-C-T | * | ||||||
19663304-T-C | 17551424-T-C | P5_Prx | * | |||||
22268619-C-T | 20106733-C-T | DYZ19 | * | |||||
22335028-T-G | 20173142-T-G | DYZ19 | * | |||||
33181-C-T | * | |||||||
7363891-G-A | 7495850-G-A | S3796 CTS1365 | ** | |||||
4240397-C-A | 4372356-C-A | ** | ||||||
13351168-C-A | 11195492-C-A | ** | ||||||
15442442-G-C | 13330562-G-C | CTS4164 | ** | |||||
3734665-C-T | 3866624-C-T | FT318307 | ** | |||||
14499529-C-T | 12387734-C-T | F19007 | ** | |||||
22113714-T-A | 19951828-T-A | PF2190 | ** | |||||
6024572-ATG-A | 6156531-ATG-A | ** | ||||||
3610154-C-A | 3742113-C-A | ** | ||||||
5358558-C-A | 5490517-C-A | ** | ||||||
10830984-C-A | ** | |||||||
16277899-C-A | 14166019-C-A | ** | ||||||
10975760-C-G | ** | |||||||
20809847-A-G | 18647961-A-G | P4_Gap | ** | |||||
10914548-G-T | ** | |||||||
10946546-C-T | ** | |||||||
22170603-C-A | 20008717-C-A | ** | ||||||
28484520-C-A | 26338373-C-A | ** | ||||||
10949186-G-T | ** | |||||||
5228565-CA-C | 5360524-CA-C | 8×A | ** | |||||
20570265-C-A | 18408379-C-A | P5_Dst | ** | |||||
15986592-C-A | 13874712-C-A | ** | ||||||
3848543-C-A | 3980502-C-A | ** | ||||||
10994197-T-G | ** | |||||||
17317463-C-A | 15205583-C-A | ** | ||||||
15363932-C-T | 13252052-C-T | ** | ||||||
21078969-C-A | 18917083-C-A | ** | ||||||
26060205-A-G | 23914058-A-G | P1_Y1 | ** | |||||
10877804-A-C | ** | |||||||
10877807-C-G | ** | |||||||
18756294-C-A | 16644414-C-A | ** | ||||||
10949191-G-T | ** | |||||||
16039351-C-A | 13927471-C-A | ** | ||||||
10773164-C-T | ** | |||||||
8279885-C-A | 8411844-C-A | ** | ||||||
9731618-T-TG | 9894009-T-TG | IR3_Prx | ** | |||||
24961230-C-A | 22815083-C-A | g1 | ** | |||||
16520941-G-A | 14409061-G-A | ** | ||||||
10982406-C-A | ** | |||||||
8281779-CAAAA-C | 8413738-CAAAA-C | 15×A | ** | |||||
17492324-G-T | 15380444-G-T | ** | ||||||
10986024-C-A | ** | |||||||
15864238-C-A | 13752358-C-A | ** | ||||||
10947862-G-T | ** | |||||||
10896081-C-A | ** | |||||||
10781232-C-T | ** | |||||||
10781237-C-T | ** | |||||||
11654649-G-A | FT450457 | DYZ17 | ** | |||||
5393362-C-CGGA | 5525321-C-CGGA | 10×GGA | ** | |||||
7138311-C-A | 7270270-C-A | ** | ||||||
24406598-G-T | 22260451-G-T | ** | ||||||
20026763-T-TC | 17914883-T-TC | P5_Prx | ** | |||||
5447049-A-G | 5579008-A-G | ** | ||||||
10808160-C-A | ** | |||||||
4129928-C-A | 4261887-C-A | ** | ||||||
23035980-G-GA | 20874094-G-GA | 9×A | ** | |||||
4521518-C-A | 4653477-C-A | ** | ||||||
8736617-C-A | 8868576-C-A | FT375505 | ** | |||||
22730567-C-A | 20568681-C-A | ** | ||||||
10856275-C-T | ** | |||||||
10856277-C-A | ** | |||||||
10856281-T-C | ** | |||||||
20661851-C-A | 18499965-C-A | P4_Prx | ** | |||||
28558869-C-A | 26412722-C-A | ** | ||||||
10692166-C-A | ** | |||||||
5368169-G-T | 5500128-G-T | ** | ||||||
4560970-C-A | 4692929-C-A | ** | ||||||
14499523-G-A | 12387728-G-A | ** | ||||||
25966260-C-T | 23820113-C-T | P1_Y1 | ** | |||||
2974342-C-A | 3106301-C-A | ** | ||||||
10883857-C-A | ** | |||||||
13896020-C-A | 11775314-C-A | ** | ||||||
2792523-G-T | 2924482-G-T | ** | ||||||
2865855-G-A | 2997814-G-A | ** | ||||||
2915264-T-C | 3047223-T-C | ** | ||||||
3025178-T-C | 3157137-T-C | ** | ||||||
3112504-G-A | 3244463-G-A | ** | ||||||
3119407-T-C | 3251366-T-C | ** | ||||||
3146614-T-C | 3278573-T-C | ** | ||||||
3188926-C-A | 3320885-C-A | ** | ||||||
3197417-C-A | 3329376-C-A | ** | ||||||
3368499-C-A | 3500458-C-A | ** | ||||||
3380046-C-G | 3512005-C-G | ** | ||||||
3390597-C-A | 3522556-C-A | ** | ||||||
3397052-C-A | 3529011-C-A | ** | ||||||
3410845-C-A | 3542804-C-A | FT317132 | ** | |||||
3435063-A-G | 3567022-A-G | ** | ||||||
3435154-G-A | 3567113-G-A | ** | ||||||
3435245-G-T | 3567204-G-T | ** | ||||||
3435259-A-C | 3567218-A-C | ** | ||||||
3454837-TTG-T | 3586796-TTG-T | ** | ||||||
3470278-A-G | 3602237-A-G | ** | ||||||
3475622-G-T | 3607581-G-T | ** | ||||||
3478288-C-A | 3610247-C-A | ** | ||||||
3545911-G-C | 3677870-G-C | FT112941 | ** | |||||
3570157-G-A | 3702116-G-A | ** | ||||||
3571574-C-A | 3703533-C-A | ** | ||||||
3603447-C-A | 3735406-C-A | ** | ||||||
3620884-A-T | 3752843-A-T | ** | ||||||
3629959-C-A | 3761918-C-A | ** | ||||||
3641309-C-A | 3773268-C-A | ** | ||||||
3649154-C-T | 3781113-C-T | ** | ||||||
3665003-G-T | 3796962-G-T | FT113044 | ** | |||||
3702781-T-C | 3834740-T-C | ** | ||||||
3737858-C-A | 3869817-C-A | ** | ||||||
3771320-G-T | 3903279-G-T | ** | ||||||
3799864-C-A | 3931823-C-A | ** | ||||||
3811437-T-G | 3943396-T-G | ** | ||||||
3844207-A-C | 3976166-A-C | ** | ||||||
3844237-T-C | 3976196-T-C | ** | ||||||
3854240-C-A | 3986199-C-A | ** | ||||||
3892041-C-A | 4024000-C-A | ** | ||||||
3922257-A-G | 4054216-A-G | ** | ||||||
3925713-C-T | 4057672-C-T | ** | ||||||
3939728-G-T | 4071687-G-T | ** | ||||||
3987712-C-A | 4119671-C-A | ** | ||||||
3988005-A-T | 4119964-A-T | ** | ||||||
3988038-A-G | 4119997-A-G | ** | ||||||
3988073-G-C | 4120032-G-C | ** | ||||||
3988123-C-T | 4120082-C-T | FT95217 | ** | |||||
3988133-T-C | 4120092-T-C | ** | ||||||
4053367-C-A | 4185326-C-A | ** | ||||||
4062648-A-G | 4194607-A-G | ** | ||||||
4080874-C-A | 4212833-C-A | ** | ||||||
4093462-C-A | 4225421-C-A | ** | ||||||
4094386-T-C | 4226345-T-C | ** | ||||||
4104178-G-T | 4236137-G-T | ** | ||||||
4129924-C-T | 4261883-C-T | ** | ||||||
4167129-C-T | 4299088-C-T | ** | ||||||
4217822-G-T | 4349781-G-T | ** | ||||||
4224035-G-T | 4355994-G-T | ** | ||||||
4241512-C-A | 4373471-C-A | ** | ||||||
4242149-C-A | 4374108-C-A | ** | ||||||
4286512-T-A | 4418471-T-A | ** | ||||||
4301323-C-A | 4433282-C-A | ** | ||||||
4301709-T-A | 4433668-T-A | ** | ||||||
4302445-T-C | 4434404-T-C | ** | ||||||
4307263-C-A | 4439222-C-A | ** | ||||||
4356950-T-A | 4488909-T-A | ** | ||||||
4437639-C-A | 4569598-C-A | ** | ||||||
4438731-C-A | 4570690-C-A | ** | ||||||
4443255-T-C | 4575214-T-C | ** | ||||||
4447050-G-T | 4579009-G-T | ** | ||||||
4532159-G-T | 4664118-G-T | ** | ||||||
4532590-A-T | 4664549-A-T | ** | ||||||
4554730-C-A | 4686689-C-A | ** | ||||||
4563519-T-C | 4695478-T-C | ** | ||||||
4586352-CTT-C | 4718311-CTT-C | 11×T | ** | |||||
4620653-T-G | 4752612-T-G | ** | ||||||
4630513-G-T | 4762472-G-T | ** | ||||||
4647499-G-T | 4779458-G-T | ** | ||||||
4656950-C-A | 4788909-C-A | ** | ||||||
4717192-C-A | 4849151-C-A | ** | ||||||
4801902-A-C | 4933861-A-C | ** | ||||||
4805327-C-T | 4937286-C-T | ** | ||||||
4877585-A-C | 5009544-A-C | ** | ||||||
4890019-T-A | 5021978-T-A | ** | ||||||
4964509-T-A | 5096468-T-A | ** | ||||||
4969254-C-A | 5101213-C-A | ** | ||||||
4979007-G-T | 5110966-G-T | ** | ||||||
4979021-T-C | 5110980-T-C | ** | ||||||
4999648-C-A | 5131607-C-A | ** | ||||||
5006479-A-G | 5138438-A-G | ** | ||||||
5050975-G-T | 5182934-G-T | ** | ||||||
5058864-TT-A | 5190823-TT-A | ** | ||||||
5089972-C-A | 5221931-C-A | ** | ||||||
5188528-G-C | 5320487-G-C | ** | ||||||
5217551-C-A | 5349510-C-A | ** | ||||||
5219619-CT-C | 5351578-CT-C | ** | ||||||
5225910-G-T | 5357869-G-T | ** | ||||||
5228553-A-C | 5360512-A-C | ** | ||||||
5230485-C-A | 5362444-C-A | ** | ||||||
5262962-A-T | 5394921-A-T | ** | ||||||
5310220-C-A | 5442179-C-A | ** | ||||||
5316805-T-A | 5448764-T-A | ** | ||||||
5334382-C-A | 5466341-C-A | ** | ||||||
5358940-C-A | 5490899-C-A | ** | ||||||
5365929-G-T | 5497888-G-T | ** | ||||||
5443977-A-C | 5575936-A-C | ** | ||||||
5527237-A-G | 5659196-A-G | ** | ||||||
5548731-T-A | 5680690-T-A | ** | ||||||
5572541-G-A | 5704500-G-A | ** | ||||||
5572553-G-C | 5704512-G-C | ** | ||||||
5572572-T-A | 5704531-T-A | ** | ||||||
5572574-C-T | 5704533-C-T | ** | ||||||
5572575-C-G | 5704534-C-G | ** | ||||||
5576669-C-G | 5708628-C-G | ** | ||||||
5603451-T-C | 5735410-T-C | ** | ||||||
5605964-TG-T | 5737923-TG-T | ** | ||||||
5649299-C-A | 5781258-C-A | ** | ||||||
5669277-A-G | 5801236-A-G | ** | ||||||
5674260-T-A | 5806219-T-A | ** | ||||||
5689094-T-C | 5821053-T-C | ** | ||||||
5755038-T-C | 5886997-T-C | ** | ||||||
5755110-G-A | 5887069-G-A | ** | ||||||
5757739-G-T | 5889698-G-T | ** | ||||||
5803153-T-C | 5935112-T-C | ** | ||||||
5843125-A-G | 5975084-A-G | ** | ||||||
5851345-C-A | 5983304-C-A | ** | ||||||
5965688-C-A | 6097647-C-A | ** | ||||||
5975001-C-A | 6106960-C-A | ** | ||||||
5990725-G-T | 6122684-G-T | ** | ||||||
6001498-C-G | 6133457-C-G | ** | ||||||
6004319-C-A | 6136278-C-A | ** | ||||||
6019898-A-C | 6151857-A-C | ** | ||||||
6041778-G-T | 6173737-G-T | ** | ||||||
6051769-G-T | 6183728-G-T | ** | ||||||
6051860-G-T | 6183819-G-T | ** | ||||||
6074603-G-T | 6206562-G-T | ** | ||||||
6305400-A-T | 6437359-A-T | IR3_Dst | ** | |||||
6459921-C-A | 6591880-C-A | ** | ||||||
6475424-G-C | 6607383-G-C | ** | ||||||
6482642-A-G | 6614601-A-G | ** | ||||||
6492638-G-C | 6624597-G-C | ** | ||||||
6523984-C-A | 6655943-C-A | ** | ||||||
6530004-C-A | 6661963-C-A | ** | ||||||
6530212-T-C | 6662171-T-C | ** | ||||||
6536362-A-G | 6668321-A-G | ** | ||||||
6579993-A-G | 6711952-A-G | ** | ||||||
6605668-T-A | 6737627-T-A | ** | ||||||
6605807-T-C | 6737766-T-C | ** | ||||||
6624691-G-T | 6756650-G-T | ** | ||||||
6713510-C-A | 6845469-C-A | ** | ||||||
6807151-C-T | 6939110-C-T | ** | ||||||
6807991-C-A | 6939950-C-A | ** | ||||||
6881283-C-A | 7013242-C-A | ** | ||||||
6923055-A-T | 7055014-A-T | ** | ||||||
7029683-T-A | 7161642-T-A | ** | ||||||
7080815-A-AT | 7212774-A-AT | ** | ||||||
7116377-C-A | 7248336-C-A | ** | ||||||
7138359-T-G | 7270318-T-G | ** | ||||||
7142740-T-C | 7274699-T-C | ** | ||||||
7148232-T-A | 7280191-T-A | ** | ||||||
7148255-C-A | 7280214-C-A | ** | ||||||
7170389-A-C | 7302348-A-C | ** | ||||||
7182024-G-A | 7313983-G-A | ** | ||||||
7209992-C-A | 7341951-C-A | ** | ||||||
7238061-C-A | 7370020-C-A | ** | ||||||
7277514-C-A | 7409473-C-A | ** | ||||||
7342209-T-C | 7474168-T-C | ** | ||||||
7343756-G-T | 7475715-G-T | M12433 | ** | |||||
7369101-C-A | 7501060-C-A | ** | ||||||
7369121-C-A | 7501080-C-A | ** | ||||||
7503823-AT-A | 7635782-AT-A | IR1_L | ** | |||||
7753127-T-C | 7885086-T-C | ** | ||||||
7894728-A-C | 8026687-A-C | ** | ||||||
8074264-G-T | 8206223-G-T | ** | ||||||
8112491-G-A | 8244450-G-A | ** | ||||||
8237367-C-A | 8369326-C-A | ** | ||||||
8270038-A-G | 8401997-A-G | ** | ||||||
8325615-T-C | 8457574-T-C | ** | ||||||
8668362-T-G | 8800321-T-G | ** | ||||||
8712919-T-C | 8844878-T-C | ** | ||||||
8822488-G-A | 8954447-G-A | ** | ||||||
9055557-G-T | ** | |||||||
9056661-C-T | ** | |||||||
9109742-G-T | ** | |||||||
8976855-G-T | 9139246-G-T | ** | ||||||
9081629-C-A | 9244020-C-A | ** | ||||||
9082115-T-G | 9244506-T-G | ** | ||||||
9377908-G-C | 9540299-G-C | ** | ||||||
9427578-A-C | 9589969-A-C | ** | ||||||
9431655-A-G | 9594046-A-G | ** | ||||||
9444766-T-C | 9607157-T-C | ** | ||||||
9501229-C-A | 9663620-C-A | ** | ||||||
9908524-G-T | 10070915-G-T | ** | ||||||
9912991-G-A | 10075382-G-A | ** | ||||||
9956658-C-A | 10119049-C-A | ** | ||||||
9996448-C-T | 10158839-C-T | ** | ||||||
10032853-C-A | 10195244-C-A | ** | ||||||
10034172-C-A | 10196563-C-A | ** | ||||||
10060764-C-A | 10223155-C-A | ** | ||||||
10070155-T-G | 10232546-T-G | ** | ||||||
10083699-T-C | 10246090-T-C | ** | ||||||
10651540-C-G | ** | |||||||
10656205-G-T | ** | |||||||
10689102-C-A | ** | |||||||
10690566-C-A | ** | |||||||
10690830-G-T | ** | |||||||
10756559-C-G | ** | |||||||
10756576-T-G | ** | |||||||
10756589-C-T | ** | |||||||
10756611-TTCCAC-T | ** | |||||||
10756639-C-T | ** | |||||||
10756640-A-AT | ** | |||||||
10756643-GT-C | ** | |||||||
10759135-C-A | ** | |||||||
10761665-C-A | ** | |||||||
10777082-C-A | ** | |||||||
10781133-ATTCAT-A | ** | |||||||
10781156-C-A | ** | |||||||
10781167-C-A | ** | |||||||
10781172-C-T | ** | |||||||
10781191-G-A | ** | |||||||
10781212-C-G | ** | |||||||
10781224-GGC-G | ** | |||||||
10781229-A-ACT | ** | |||||||
10788904-A-G | ** | |||||||
10792862-T-C | ** | |||||||
10795611-T-C | ** | |||||||
10800273-T-C | ** | |||||||
10804944-C-T | ** | |||||||
10812973-G-T | ** | |||||||
10818275-C-A | ** | |||||||
10819831-A-T | ** | |||||||
10820559-C-A | ** | |||||||
10829142-C-A | ** | |||||||
10829364-T-TTCC | ** | |||||||
10831169-T-A | ** | |||||||
10831200-T-G | ** | |||||||
10840224-C-A | ** | |||||||
10849912-C-A | ** | |||||||
10849962-T-C | ** | |||||||
10850716-G-T | ** | |||||||
10876828-C-A | ** | |||||||
10884242-C-A | ** | |||||||
10884266-C-A | ** | |||||||
10885378-T-G | ** | |||||||
10899791-G-T | ** | |||||||
10901108-C-A | ** | |||||||
10901883-C-A | ** | |||||||
10908042-G-T | ** | |||||||
10928999-A-T | ** | |||||||
10931608-G-T | ** | |||||||
10932163-T-C | ** | |||||||
10932173-C-T | ** | |||||||
10932176-C-T | ** | |||||||
10932207-A-T | ** | |||||||
10933327-T-A | ** | |||||||
10935956-C-A | ** | |||||||
10947753-A-C | ** | |||||||
10950596-C-A | ** | |||||||
10963347-C-A | ** | |||||||
10969470-C-T | FT92138 | ** | ||||||
10972319-C-A | ** | |||||||
10972399-C-A | ** | |||||||
10977069-T-TCCA | ** | |||||||
10980112-C-A | ** | |||||||
10989316-C-A | ** | |||||||
10992666-C-A | ** | |||||||
10993430-C-A | ** | |||||||
10994884-A-T | ** | |||||||
10995333-C-A | ** | |||||||
10996642-C-A | ** | |||||||
11009649-T-C | ** | |||||||
11010139-A-T | ** | |||||||
11011253-C-G | ** | |||||||
11014060-C-A | ** | |||||||
11016551-C-A | ** | |||||||
11018661-G-T | ** | |||||||
11020957-C-A | ** | |||||||
11027595-C-A | ** | |||||||
11032437-C-A | ** | |||||||
11037098-C-T | ** | |||||||
11037119-A-ATTCCT | ** | |||||||
11037146-T-C | ** | |||||||
11037164-A-T | ** | |||||||
13215476-T-C | 11059800-T-C | ** | ||||||
13240722-G-A | 11085046-G-A | ** | ||||||
13308681-A-C | 11153005-A-C | ** | ||||||
13317355-T-A | 11161679-T-A | ** | ||||||
13405665-C-A | 11249989-C-A | ** | ||||||
13411866-T-A | 11256190-T-A | ** | ||||||
13525683-T-C | 11370007-T-C | ** | ||||||
13527074-A-G | 11371398-A-G | ** | ||||||
13632760-C-T | 11477084-C-T | ** | ||||||
13690244-C-A | 11534568-C-A | DYZ17 | ** | |||||
11647153-A-G | DYZ17 | ** | ||||||
11647188-A-C | DYZ17 | ** | ||||||
11662721-C-A | DYZ17 | ** | ||||||
11664151-G-A | FT407478 | FT268722 | DYZ17 | ** | ||||
11668524-G-C | DYZ17 | ** | ||||||
11676574-C-A | FT451439 | DYZ17 | ** | |||||
13904942-T-G | 11784236-T-G | ** | ||||||
13904965-T-G | 11784259-T-G | ** | ||||||
13913741-TAAA-T | 11793035-TAAA-T | 13×A | ** | |||||
13921621-A-G | 11800915-A-G | ** | ||||||
13938374-C-A | 11817668-C-A | ** | ||||||
13953098-C-A | 11832392-C-A | ** | ||||||
13953437-T-A | 11832731-T-A | ** | ||||||
13961392-C-A | 11840686-C-A | ** | ||||||
13963072-C-A | 11842366-C-A | ** | ||||||
14029131-T-C | 11908425-T-C | ** | ||||||
14076106-C-A | 11955400-C-A | ** | ||||||
14086005-C-A | 11965299-C-A | ** | ||||||
14122904-C-T | 12002198-C-T | ** | ||||||
14175098-C-A | 12054392-C-A | ** | ||||||
14184254-C-A | 12063548-C-A | ** | ||||||
14226475-A-T | 12105769-A-T | ** | ||||||
14272198-C-A | 12151492-C-A | ** | ||||||
14279066-C-A | 12158360-C-A | ** | ||||||
14279108-C-A | 12158402-C-A | ** | ||||||
14295353-C-A | 12174647-C-A | ** | ||||||
14295441-G-T | 12174735-G-T | ** | ||||||
14354491-G-T | 12233786-G-T | FT116640 | ** | |||||
14392892-C-A | 12272188-C-A | ** | ||||||
14395747-C-A | 12275043-C-A | ** | ||||||
14463373-T-C | 12342646-T-C | ** | ||||||
14468310-C-A | 12347579-C-A | ** | ||||||
14483304-C-A | 12362573-C-A | ** | ||||||
14508664-A-T | 12396869-A-T | ** | ||||||
14525878-A-G | 12414079-A-G | ** | ||||||
14531368-AT-A | 12419569-AT-A | ** | ||||||
14532047-G-C | 12420248-G-C | ** | ||||||
14537906-C-A | 12426107-C-A | ** | ||||||
14539675-C-A | 12427876-C-A | ** | ||||||
14558553-A-G | 12446754-A-G | ** | ||||||
14625519-C-A | 12513787-C-A | ** | ||||||
14667965-A-C | 12556031-A-C | ** | ||||||
14717590-AG-A | 12605658-AG-A | ** | ||||||
14718609-G-T | 12606677-G-T | ** | ||||||
14718786-C-A | 12606854-C-A | ** | ||||||
14724647-C-A | 12612715-C-A | ** | ||||||
14757330-C-A | 12645399-C-A | ** | ||||||
14933877-T-G | 12821942-T-G | ** | ||||||
15045586-C-T | 12933676-C-T | ** | ||||||
15045603-T-TG | 12933693-T-TG | ** | ||||||
15045606-A-G | 12933696-A-G | ** | ||||||
15045619-T-C | 12933709-T-C | ** | ||||||
15098649-C-T | 12986737-C-T | ** | ||||||
15117030-C-G | 13005117-C-G | ** | ||||||
15140958-G-A | 13029045-G-A | ** | ||||||
15142280-C-A | 13030367-C-A | ** | ||||||
15142307-A-G | 13030394-A-G | ** | ||||||
15142519-A-T | 13030606-A-T | ** | ||||||
15193594-C-A | 13081680-C-A | ** | ||||||
15221067-C-A | 13109153-C-A | ** | ||||||
15363936-T-A | 13252056-T-A | ** | ||||||
15363953-G-C | 13252073-G-C | ** | ||||||
15363957-G-A | 13252077-G-A | ** | ||||||
15364050-A-T | 13252170-A-T | ** | ||||||
15396783-C-G | 13284903-C-G | ** | ||||||
15402568-T-C | 13290688-T-C | ** | ||||||
15403496-GACGGG-T | 13291616-GACGGG-T | ** | ||||||
15685730-A-G | 13573850-A-G | ** | ||||||
15741762-C-A | 13629882-C-A | ** | ||||||
15742201-G-A | 13630321-G-A | FT277259 | ** | |||||
15748252-G-T | 13636372-G-T | ** | ||||||
15762531-G-A | 13650651-G-A | ** | ||||||
15844835-C-A | 13732955-C-A | ** | ||||||
15928722-GT-G | 13816842-GT-G | ** | ||||||
15971377-C-T | 13859497-C-T | ** | ||||||
15986646-C-T | 13874766-C-T | ** | ||||||
16006783-G-T | 13894903-G-T | ** | ||||||
16012122-G-T | 13900242-G-T | ** | ||||||
16055207-G-A | 13943327-G-A | ** | ||||||
16091241-C-A | 13979361-C-A | ** | ||||||
16228109-A-G | 14116229-A-G | ** | ||||||
16273457-C-G | 14161577-C-G | ** | ||||||
16273618-A-T | 14161738-A-T | ** | ||||||
16384730-T-C | 14272850-T-C | ** | ||||||
16426719-C-A | 14314839-C-A | ** | ||||||
16450448-C-T | 14338568-C-T | ** | ||||||
16475275-T-G | 14363395-T-G | ** | ||||||
16657863-C-A | 14545983-C-A | ** | ||||||
16686740-G-T | 14574860-G-T | ** | ||||||
16729196-C-CT | 14617316-C-CT | ** | ||||||
16743106-C-T | 14631226-C-T | ** | ||||||
16987741-G-T | 14875861-G-T | ** | ||||||
17027476-C-A | 14915596-C-A | ** | ||||||
17029215-A-T | 14917335-A-T | ** | ||||||
17163749-G-A | 15051869-G-A | ** | ||||||
17211318-C-A | 15099438-C-A | ** | ||||||
17214804-A-G | 15102924-A-G | ** | ||||||
17222736-A-G | 15110856-A-G | ** | ||||||
17270632-G-A | 15158752-G-A | ** | ||||||
17285200-C-A | 15173320-C-A | ** | ||||||
17346195-T-G | 15234315-T-G | ** | ||||||
17433921-C-A | 15322041-C-A | ** | ||||||
17503747-G-T | 15391867-G-T | ** | ||||||
17504940-C-A | 15393060-C-A | ** | ||||||
17548484-T-C | 15436604-T-C | ** | ||||||
17621505-C-A | 15509625-C-A | ** | ||||||
17627870-C-A | 15515990-C-A | ** | ||||||
17702139-C-A | 15590259-C-A | ** | ||||||
17714876-T-C | 15602996-T-C | ** | ||||||
17776247-G-T | 15664367-G-T | ** | ||||||
17785720-CTTTT-C | 15673840-CTTTT-C | ** | ||||||
17854403-C-A | 15742523-C-A | ** | ||||||
17859354-G-A | 15747474-G-A | ** | ||||||
17882818-C-A | 15770938-C-A | ** | ||||||
17886206-T-A | 15774326-T-A | ** | ||||||
17968912-T-A | 15857032-T-A | ** | ||||||
18054441-G-A | 15942561-G-A | ** | ||||||
18086973-A-G | 15975093-A-G | ** | ||||||
18094053-A-T | 15982173-A-T | ** | ||||||
18183319-T-C | 16071439-T-C | ** | ||||||
18305890-G-GGA | 16194010-G-GGA | P6_Prx | ** | |||||
18354421-G-T | 16242541-G-T | P6_Prx | ** | |||||
18577156-C-A | 16465276-C-A | ** | ||||||
18733846-A-G | 16621966-A-G | ** | ||||||
18749412-G-A | 16637532-G-A | ** | ||||||
18844802-G-C | 16732922-G-C | ** | ||||||
19056028-C-G | 16944148-C-G | ** | ||||||
19071148-C-A | 16959268-C-A | ** | ||||||
19071321-G-A | 16959441-G-A | ** | ||||||
19072629-A-G | 16960749-A-G | ** | ||||||
19088555-C-A | 16976675-C-A | ** | ||||||
19122012-C-A | 17010132-C-A | ** | ||||||
19246754-C-A | 17134874-C-A | ** | ||||||
19254199-C-A | 17142319-C-A | ** | ||||||
19302742-T-A | 17190862-T-A | ** | ||||||
19462273-T-A | 17350393-T-A | ** | ||||||
19463640-GC-G | 17351760-GC-G | ** | ||||||
19465662-C-A | 17353782-C-A | ** | ||||||
19479363-C-A | 17367483-C-A | ** | ||||||
19532555-C-T | 17420675-C-T | ** | ||||||
19701461-C-G | 17589581-C-G | P5_Prx | ** | |||||
19720760-G-A | 17608880-G-A | P5_Prx | ** | |||||
19775337-GA-G | 17663457-GA-G | P5_Prx | ** | |||||
20617549-A-T | 18455663-A-T | P4_Prx | ** | |||||
20631064-C-A | 18469178-C-A | P4_Prx | ** | |||||
20685108-C-A | 18523222-C-A | P4_Prx | ** | |||||
20824935-T-C | 18663049-T-C | P4_Gap | ** | |||||
21042722-C-A | 18880836-C-A | ** | ||||||
21068451-A-T | 18906565-A-T | 17×AT | ** | |||||
21189627-A-T | 19027741-A-T | ** | ||||||
21207674-G-C | 19045788-G-C | ** | ||||||
21243346-G-T | 19081460-G-T | ** | ||||||
21268646-T-A | 19106760-T-A | ** | ||||||
21325133-G-T | 19163247-G-T | ** | ||||||
21325571-C-G | 19163685-C-G | ** | ||||||
21375617-C-A | 19213731-C-A | FT408838 | ** | |||||
21375822-C-A | 19213936-C-A | ** | ||||||
21380685-T-C | 19218799-T-C | ** | ||||||
21394846-C-A | 19232960-C-A | ** | ||||||
21409660-A-T | 19247774-A-T | ** | ||||||
21412294-TTTTA-T | 19250408-TTTTA-T | ** | ||||||
21412299-C-CA | 19250413-C-CA | ** | ||||||
21476375-C-A | 19314489-C-A | ** | ||||||
21495501-T-G | 19333615-T-G | FT119046 | ** | |||||
21523248-C-T | 19361362-C-T | ** | ||||||
21581820-G-T | 19419934-G-T | ** | ||||||
21677527-A-G | 19515641-A-G | ** | ||||||
21791626-G-T | 19629740-G-T | ** | ||||||
21794815-T-A | 19632929-T-A | ** | ||||||
21920377-T-A | 19758491-T-A | ** | ||||||
22130118-C-A | 19968232-C-A | Y108464 | ** | |||||
22134849-GA-G | 19972963-GA-G | ** | ||||||
22155461-C-A | 19993575-C-A | ** | ||||||
22241518-A-T | 20079632-A-T | DYZ19 | ** | |||||
22366347-G-C | 20204461-G-C | DYZ19 | ** | |||||
22536828-A-T | 20374942-A-T | ** | ||||||
22537006-G-T | 20375120-G-T | ** | ||||||
22541213-C-A | 20379327-C-A | ** | ||||||
22690892-G-T | 20529006-G-T | ** | ||||||
22739559-C-CA | 20577673-C-CA | 8×A | ** | |||||
22811839-T-G | 20649953-T-G | ** | ||||||
22965513-C-T | 20803627-C-T | ** | ||||||
23007252-G-A | 20845366-G-A | ** | ||||||
23038017-C-T | 20876131-C-T | ** | ||||||
23038089-C-A | 20876203-C-A | ** | ||||||
23087562-C-A | 20925676-C-A | ** | ||||||
23110842-G-T | 20948956-G-T | ** | ||||||
23144212-C-A | 20982326-C-A | ** | ||||||
23184876-C-A | 21022990-C-A | ** | ||||||
23188516-G-T | 21026630-G-T | ** | ||||||
23225670-A-T | 21063784-A-T | ** | ||||||
23464882-C-A | 21302996-C-A | ** | ||||||
23465505-C-A | 21303619-C-A | ** | ||||||
23569686-G-A | 21407800-G-A | ** | ||||||
21753383-T-C | ** | |||||||
23952525-G-A | 21806378-G-A | ** | ||||||
23997213-A-G | 21851066-A-G | ** | ||||||
24127292-A-C | 21981145-A-C | P3_b1 | ** | |||||
24405117-A-G | 22258970-A-G | ** | ||||||
24407521-G-C | 22261374-G-C | ** | ||||||
24614213-T-C | 22468066-T-C | P3_t2 | ** | |||||
24673085-A-G | 22526938-A-G | P3_b2 | ** | |||||
26057923-A-G | 23911776-A-G | P1_Y1 | ** | |||||
26135605-T-TA | 23989458-T-TA | P1_Y1 | ** | |||||
27561688-G-T | 25415541-G-T | P1_Y2 | ** | |||||
27979731-T-G | 25833584-T-G | P1_Y2 | ** | |||||
27979802-T-TC | 25833655-T-TC | P1_Y2 | ** | |||||
28429533-C-G | 26283386-C-G | P1_gr2 | ** | |||||
28461998-C-A | 26315851-C-A | ** | ||||||
28480424-G-T | 26334277-G-T | ** | ||||||
28492574-C-A | 26346427-C-A | FT119998 | ** | |||||
28510141-A-T | 26363994-A-T | ** | ||||||
28510252-A-C | 26364105-A-C | ** | ||||||
28516747-T-G | 26370600-T-G | ** | ||||||
28534423-A-T | 26388276-A-T | ** | ||||||
28598397-C-A | 26452250-C-A | ** | ||||||
28609580-C-G | 26463433-C-G | FT97362 | ** | |||||
28620621-T-C | 26474474-T-C | ** | ||||||
28712866-T-G | 26566719-T-G | ** | ||||||
28747870-C-A | 26601723-C-A | ** | ||||||
28803705-G-T | 26657558-G-T | ** | ||||||
56841641-C-A | ** | |||||||
56848656-T-C | ** | |||||||
56870182-C-A | ** | |||||||
33970-G-T | ** | |||||||
13457716-G-GATTCCATTCC | 11302040-G-GATTCCATTCC | 12×ATTCC | *** | |||||
11016436-C-A | *** | |||||||
10946676-C-A | *** | |||||||
16369735-GAAAA-G | 14257855-GAAAA-G | 15×A | *** | |||||
10869807-C-A | *** | |||||||
7332775-C-A | 7464734-C-A | *** | ||||||
8481808-CT-C,CTT | 8613767-CT-C,CTT | 11×T | *** | |||||
9077096-G-T | 9239487-G-T | *** | ||||||
9513257-T-C | 9675648-T-C | *** | ||||||
9979218-G-T | 10141609-G-T | *** | ||||||
10684002-C-A | *** | |||||||
10779381-TC-T | *** | |||||||
10816143-G-T | *** | |||||||
10826871-CACCAC-CTTCAC,T | *** | |||||||
10889862-C-A | *** | |||||||
10891960-C-G | *** | |||||||
10935484-A-C,G | *** | |||||||
10952230-T-A,C | *** | |||||||
10986459-C-T | *** | |||||||
10988670-C-A | *** | |||||||
10991215-C-T | *** | |||||||
10991251-A-G | *** | |||||||
10991264-C-G | *** | |||||||
10997578-A-G | *** | |||||||
11005105-C-A | *** | |||||||
11019444-C-A,G | *** | |||||||
11643014-G-A | DYZ17 | *** | ||||||
11648569-G-A | DYZ17 | *** | ||||||
11666984-G-A | DYZ17 | *** | ||||||
15676820-C-A | 13564940-C-A | *** | ||||||
16065037-G-T | 13953157-G-T | *** | ||||||
16429558-G-T | 14317678-G-T | *** | ||||||
17502857-C-T | 15390977-C-T | *** | ||||||
17538149-G-T | 15426269-G-T | *** | ||||||
18249997-T-A | 16138117-T-A | FT297636 | *** | |||||
19253120-G-T | 17141240-G-T | *** | ||||||
23098815-TCAAAAAA-T,TAAAAAAA | 20936929-TCAAAAAA-T,TAAAAAAA | *** | ||||||
21757416-G-T | *** | |||||||
28550214-G-T | 26404067-G-T | *** | ||||||
56834934-T-C | *** | |||||||
56851361-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.