Fitzgibbon

BigY2: 380474
MDKA Birth: Ireland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > Z21065 > A195 > A761 > A88 > BY2878 > A89 > A155 > FGC54312

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
380474
6284565-A-G 6416524-A-G IR3_Dst A*
13688244-A-G 11532568-A-G A*
13688296-G-A 11532620-G-A A*
16109705-G-A 13997825-G-A P8_Prx A*
21688399-G-C 19526513-G-C BY156940 YY+
22475439-A-T 20313553-A-T BY192414 DYZ19 +
8493990-C-T 8625949-C-T BY73380 YY+
13452364-TTCCATTCCATTCCATTCCATTCCATTCCAT-T,TTCCATTCCAG 11296688-TTCCATTCCATTCCATTCCATTCCATTCCAT-T,TTCCATTCCAG *
13452364-T-G 11296688-T-G *
10770824-C-T **
11018236-T-A **
13256704-G-T 11101028-G-T **
13253807-T-G 11098131-T-G **
13200517-A-C 11044841-A-C **
13195931-A-T 11040255-A-T **
11037745-C-A **
11035356-C-G **
11035351-G-T **
11035294-A-C **
11034710-A-T **
11021513-A-G **
11021504-C-T **
11021503-T-A **
11018252-C-G **
11016304-C-A **
13307623-T-A 11151947-T-A **
11013476-C-A **
11011031-G-A **
11001591-C-A **
10987921-T-A **
10987581-C-A **
10983917-C-A **
10983505-C-G **
10983500-C-A **
10978736-G-C **
10973784-C-CT **
10968577-A-T **
10959616-C-T **
10959611-C-G **
10952516-ATTTCT-A **
13298849-C-A 11143173-C-A **
13326315-A-C 11170639-A-C **
10952257-C-T **
11659949-A-C **
14352218-T-G 12231513-T-G **
14204816-T-A 12084110-T-A **
14174940-T-C 12054234-T-C **
14174781-A-T 12054075-A-T **
14167811-G-T 12047105-G-T **
14097945-ATTTTTTT-A 11977239-ATTTTTTT-A 23×T**
14089769-A-G 11969063-A-G **
14074315-G-T 11953609-G-T **
10751157-T-G **
13961503-A-C 11840797-A-C **
13891386-C-A 11770680-C-A **
13855254-T-A 11734548-T-A **
13804043-A-C 11683337-A-C **
11668793-C-A **
11652058-C-A **
13355019-C-A 11199343-C-A **
11650317-A-C **
13712608-C-G 11556932-C-G **
13712594-G-A 11556918-G-A **
13700677-C-A 11545001-C-A **
13700660-G-T 11544984-G-T **
13696271-A-C 11540595-A-C **
13696246-A-C 11540570-A-C **
13625712-C-A 11470036-C-A **
10753260-C-T **
13480942-C-G 11325266-C-G **
13480925-G-C 11325249-G-C **
13480915-G-T 11325239-G-T **
10753274-C-G **
13402578-C-A 11246902-C-A **
10952262-T-C **
10952225-CATTCT-C **
10785652-T-A **
10769170-C-G **
10844625-C-A **
10844615-T-G **
10844609-A-T **
10841244-C-A **
10841142-C-A **
10838105-G-T **
10833179-T-G **
10832938-C-A **
10831775-C-A **
10831409-TA-T **
10827657-T-G **
10820414-C-A **
10818563-G-T **
10815395-C-G **
10815389-T-A **
10767663-T-G **
10815353-T-C **
10815320-GCATTT-G **
10815323-T-G **
10815315-C-G **
10806949-C-T **
10806942-A-T **
10806932-T-A **
10806924-G-T **
10806918-G-T **
10801006-A-T **
10800964-C-G **
10800962-A-C **
10797956-A-T **
10785655-G-C **
10846758-T-G **
10855972-A-T **
10952227-T-C **
10914761-T-C **
10949042-C-A **
10935636-C-G **
10932422-T-TC **
14444905-C-A 12324178-C-A **
10931065-C-T **
10931045-C-T **
10931036-CATTCA-C **
10930988-T-C **
10925980-T-C **
10757194-C-A **
10925971-C-T **
10921152-A-AATCC **
10914792-T-G **
10914766-A-T **
10914748-T-A **
10863184-T-G **
10761368-C-A **
10914711-T-G **
10914692-C-T **
10914686-A-T **
10914681-T-C **
10912332-G-A **
10895097-C-G **
10891986-C-A **
10888181-G-T **
10881790-C-A **
10881025-T-G **
10876105-C-G **
10866134-ATCCAC-A **
10863237-A-C **
14369109-C-A 12248405-C-A **
14507706-C-A 12395911-C-A **
14463597-T-G 12342870-T-G **
22808915-A-C 20647029-A-C **
24279048-G-T 22132901-G-T P3_t1 **
24241259-T-A 22095112-T-A P3_b1 **
24241241-G-T 22095094-G-T P3_b1 **
23773587-C-A 21611701-C-A **
23720450-A-G 21558564-A-G **
23310495-C-A 21148609-C-A **
23081921-T-C 20920035-T-C **
23044257-C-A 20882371-C-A **
23019849-T-G 20857963-T-G **
22984043-C-A 20822157-C-A **
22965704-C-A 20803818-C-A **
22885049-C-A 20723163-C-A **
22833684-T-G 20671798-T-G **
22820355-T-A 20658469-T-A 12×A**
22803944-C-A 20642058-C-A **
24363907-A-T 22217760-A-T **
22765416-A-G 20603530-A-G **
22624816-C-A 20462930-C-A **
22613976-A-C 20452090-A-C **
22537809-G-T 20375923-G-T **
22337687-C-G 20175801-C-G DYZ19 **
22193081-C-A 20031195-C-A **
22172957-C-A 20011071-C-A **
21961773-A-G 19799887-A-G **
21910903-T-G 19749017-T-G **
21773110-T-G 19611224-T-G **
21574024-G-A 19412138-G-A **
21563165-C-T 19401279-C-T Y33241 **
21438276-T-A 19276390-T-A **
21255980-C-A 19094094-C-A **
24359655-C-A 22213508-C-A **
24577810-C-A 22431663-C-A P3_t2 **
20761009-A-C 18599123-A-C P4_Prx **
56838626-G-T **
56851571-T-C **
56851353-C-A **
56850410-G-T **
56850404-C-G **
56844736-T-G **
56844707-T-A **
56838695-T-A **
56838687-C-A **
56838659-G-A **
56838657-A-T **
56838645-G-A **
56838634-T-C **
56838630-A-G **
56838629-G-T **
56838623-C-A **
24870135-A-C 22723988-A-C P3_b2 **
28499920-C-A 26353773-C-A **
24910959-G-T 22764812-G-T g1 **
25617175-TTGTGTG-T 23471028-TTGTGTG-T P1_gr1 19×TG**
25884493-A-C 23738346-A-C P1_Y1 **
25884528-T-A 23738381-T-A P1_Y1 **
25971508-C-A 23825361-C-A P1_Y1 **
28480716-C-A 26334569-C-A **
28506208-T-A 26360061-T-A **
56838338-C-A **
28558985-C-A 26412838-C-A **
28610222-C-A 26464075-C-A **
28655439-G-A 26509292-G-A **
28658529-C-A 26512382-C-A **
28797850-A-T 26651703-A-T **
28815236-G-A 26669089-G-A **
20867917-A-AG 18706031-A-AG P4_Dst **
20755659-T-G 18593773-T-G P4_Prx **
14474627-T-A 12353896-T-A **
15606768-T-G 13494888-T-G **
16896194-A-T 14784314-A-T **
16602723-G-T 14490843-G-T **
16440438-C-A 14328558-C-A **
16323856-C-A 14211976-C-A **
16276028-G-T 14164148-G-T **
16181336-A-T 14069456-A-T **
16130311-T-G 14018431-T-G P8_Prx **
16130303-T-G 14018423-T-G P8_Prx **
15967503-C-A 13855623-C-A 14×T**
15963972-T-G 13852092-T-G **
15798024-A-T 13686144-A-T **
15740662-G-T 13628782-G-T **
15688046-C-A 13576166-C-A **
15619411-C-A 13507531-C-A **
15536242-T-C 13424362-T-C **
17056522-C-A 14944642-C-A **
15011746-G-C 12899834-G-C **
10750070-C-G **
14518964-C-A 12407165-C-A **
14531093-C-A 12419294-C-A **
14635592-T-A 12523661-T-A **
14986080-T-C 12874148-T-C **
15011742-A-C 12899830-A-C **
15084802-C-A 12972892-C-A **
15536240-T-C 13424360-T-C **
15138221-A-G 13026308-A-G **
15187014-T-G 13075100-T-G **
15276401-T-G 13164490-T-G **
15433650-C-A 13321770-C-A **
15452308-G-T 13340428-G-T **
15475358-C-A 13363478-C-A FGC38618 **
16938470-C-A 14826590-C-A **
17058712-G-T 14946832-G-T **
20734506-C-A 18572620-C-A P4_Prx **
18793699-G-T 16681819-G-T **
20434751-C-A 18272865-C-A P5_Dst **
19963798-GT-G 17851918-GT-G P5_Prx **
19935998-C-A 17824118-C-A P5_Prx **
19537874-G-T 17425994-G-T **
19411854-A-C 17299974-A-C **
19411750-C-A 17299870-C-A **
19254456-T-G 17142576-T-G **
19253052-G-T 17141172-G-T **
19161061-C-A 17049181-C-A **
19071316-A-T 16959436-A-T **
19044649-A-C 16932769-A-C **
18972168-A-C 16860288-A-C **
18961550-T-G 16849670-T-G **
18923892-A-C 16812012-A-C **
18675128-C-A 16563248-C-A **
17426577-T-G 15314697-T-G **
18130656-G-T 16018776-G-T **
17466550-C-T 15354670-C-T **
17597725-C-A 15485845-C-A **
17633023-C-A 15521143-C-A **
17685647-T-G 15573767-T-G **
17842313-C-A 15730433-C-A **
18037966-C-A 15926086-C-A **
18191339-C-A 16079459-C-A **
18636732-C-A 16524852-C-A **
18196516-ATC-A 16084636-ATC-A **
18255887-G-T 16144007-G-T **
18271018-GTTTTTT-G 16159138-GTTTTTT-G 17×T**
18382641-C-A 16270761-C-A P6_Gap 10×A**
18390054-A-G 16278174-A-G P6_Gap **
18427764-C-A 16315884-C-A P6_Dst **
10750087-C-T **
10785694-G-T **
10750065-C-A **
10791272-A-T **
10776117-T-A **
2758312-T-G 2890271-T-G **
56850425-T-C **
56850415-TA-T **
18343595-C-A 16231715-C-A P6_Prx **
19575886-C-A 17464006-C-A P5_Prx **
10776122-T-C **
13709473-A-C 11553797-A-C **
9424545-C-A 9586936-C-A **
21505111-C-A 19343225-C-A **
10813096-C-A **
10906193-A-C **
11007495-A-C **
10663944-A-T **
10760982-C-G **
10663941-A-C **
10663937-C-T **
10663915-T-G **
2665757-C-A 2797716-C-A **
11000415-T-C **
10880282-C-A **
10983725-G-T **
10788787-C-A **
10788777-G-C **
3990664-CAAAA-C 4122623-CAAAA-C 18×A**
10895816-C-A **
3011596-C-A 3143555-C-A **
11001573-C-A **
23037237-ATTTTT-A 20875351-ATTTTT-A 20×T**
4136963-C-A 4268922-C-A **
8702832-C-T 8834791-C-T **
3279802-C-A 3411761-C-A **
13899399-C-A 11778693-C-A **
10914697-T-A **
6992553-CTTT-C 7124512-CTTT-C 17×T**
28542435-A-T 26396288-A-T **
10962612-C-T **
13700674-A-T 11544998-A-T **
10749003-T-A **
27994690-A-AT 25848543-A-AT P1_Y2 **
16905706-C-A 14793826-C-A **
10669506-T-C **
10844607-T-C **
3599459-A-C 3731418-A-C **
10684253-C-T **
10748997-T-A **
10983498-T-C **
10866076-C-A **
10806905-C-A **
10750063-T-G **
10971999-T-C **
19476448-C-A 17364568-C-A **
22147794-C-A 19985908-C-A **
11001601-T-A FT51772 **
19012430-C-A 16900550-C-A **
6177407-G-T 6309366-G-T IR3_Dst **
10787967-T-C **
11001571-C-A **
10880286-C-T **
10912280-A-T **
11004486-C-A **
28597374-C-A 26451227-C-A **
14431192-C-A 12310465-C-A **
13705500-G-A 11549824-G-A **
24241226-C-A 22095079-C-A P3_b1 **
22341134-C-G 20179248-C-G DYZ19 **
22240991-A-G 20079105-A-G F25167 DYZ19 **
14580841-CA-C 12469041-CA-C 9×A**
11030156-C-T **
10914751-C-A **
10978732-A-C **
10959496-T-A **
10959494-C-A **
10959488-C-G **
10983928-T-G **
10983894-TAATTCCGTTC-T **
10684243-C-T **
13705492-A-AATAAG 11549816-A-AATAAG **
10852744-A-T **
11030161-TCCAA-T **
5190004-G-GAA 5321963-G-GAA 16×A**
4534300-G-GT 4666259-G-GT 10×T**
13857855-T-A 11737149-T-A **
13707392-A-C 11551716-A-C **
28700731-CTATATATA-C 26554584-CTATATATA-C 17×TA**
21323780-C-A 19161894-C-A Z27975 **
15746337-C-T 13634457-C-T Y26584 **
14101423-ATTC-A 11980717-ATTC-A **
10023769-GTC-G 10186160-GTC-G **
14910797-AAT-A 12798864-AAT-A **
22234716-G-A 20072830-G-A FGC10717 DYZ19 **
22341188-T-C 20179302-T-C DYZ19 **
10852743-G-A **
10852751-T-A **
10983943-T-A **
10831371-C-T **
11000419-A-ACCCCC **
10807363-TCCAC-T **
10906194-A-T **
10906181-C-G **
10906165-G-C **
10906160-C-G **
10906157-T-A **
10935444-T-C **
10762213-C-T **
10834520-A-C **
10895826-C-A **
11024536-T-G **
10831447-A-T **
28580291-T-G 26434144-T-G **
10852758-C-A **
10801027-T-A **
10801026-A-C **
10801004-CAATT-C **
14432390-C-A 12311663-C-A **
10967538-C-G **
28558571-C-A 26412424-C-A **
9172704-C-A 9335095-C-A B221 **
10952259-A-C **
14700724-C-A 12588790-C-A **
10852815-G-A **
10852804-G-T **
10852796-T-C **
10852784-C-A **
10852771-C-G **
10831450-G-C **
9022886-G-T 9185277-G-T **
56875076-G-T **
6305851-G-GTC 6437810-G-GTC IR3_Dst **
10672333-T-A **
10906785-G-T **
7044366-A-C 7176325-A-C **
7039153-C-A 7171112-C-A **
7032623-T-G 7164582-T-G **
10678582-C-G **
6828744-T-G 6960703-T-G **
10678583-C-CACTTT **
6720911-C-A 6852870-C-A **
6712620-G-T 6844579-G-T **
6631847-C-A 6763806-C-A **
10678605-C-CTCCA **
6279798-CAAAA-C 6411757-CAAAA-C IR3_Dst 13×A**
7107014-TA-C 7238973-TA-C **
5910341-A-C 6042300-A-C **
5853490-G-T 5985449-G-T **
5614600-G-T 5746559-G-T **
10678608-A-ACC **
10678610-T-AA **
5354957-A-AT 5486916-A-AT 9×T**
5189997-T-G 5321956-T-G **
5127149-C-A 5259108-C-A **
5035559-TG-T 5167518-TG-T **
4900865-G-T 5032824-G-T **
4872426-T-C 5004385-T-C **
4870449-G-T 5002408-G-T **
10678638-C-CATCAG **
7081351-C-A 7213310-C-A 8×A**
7238341-C-A 7370300-C-A **
4534179-G-T 4666138-G-T **
8052569-C-A 8184528-C-A **
8973040-G-T 9135431-G-T **
9508377-C-A 9670768-C-A **
8810808-T-C 8942767-T-C **
8807393-T-G 8939352-T-G **
9702894-AC-A 9865285-AC-A IR3_Prx **
8799776-C-A 8931735-C-A **
8712955-C-A 8844914-C-A **
9799360-C-A 9961751-C-A **
8274096-C-A 8406055-C-A **
9810771-C-A 9973162-C-A **
9956283-A-C 10118674-A-C **
8067399-T-G 8199358-T-G **
10018021-A-C 10180412-A-C **
8007958-A-C 8139917-A-C **
7255026-C-A 7386985-C-A **
10645890-G-C **
10645893-T-G **
7783401-C-A 7915360-C-A **
7756416-C-A 7888375-C-A **
7646737-C-A 7778696-C-A **
10654208-TTACAC-T **
7641142-C-A 7773101-C-A **
7562203-C-A 7694162-C-A **
10661769-C-A **
10666758-C-A **
7502431-T-C 7634390-T-C IR1_L **
7377520-C-T 7509479-C-T **
10672327-T-A **
9328992-C-A 9491383-C-A **
4564545-A-T 4696504-A-T **
10690669-T-G **
3759312-C-A 3891271-C-A **
21328846-A-T 19166960-A-T **
13273937-A-C 11118261-A-C **
17285225-C-A 15173345-C-A **
14432312-C-A 12311585-C-A **
10749020-T-C **
7390118-C-A 7522077-C-A **
23802042-C-A 21640156-C-A **
10749028-ATTCAGTTC-A **
10749044-T-C **
10749066-T-A **
22425534-A-T 20263648-A-T DYZ19 **
10952287-T-C **
23881876-C-CAA 21719990-C-CAA 18×A**
10678650-T-C **
10749074-C-A **
10750043-T-C **
24910932-C-A 22764785-C-A g1 **
15756617-C-A 13644737-C-A **
9962189-C-A 10124580-C-A **
10936423-C-A **
2697618-C-A 2829577-C-A **
10749082-C-T **
10750061-T-C **
5335388-C-A 5467347-C-A **
10981252-C-A **
9146903-G-T 9309294-G-T **
3853666-T-A 3985625-T-A **
10691033-C-CA **
10691044-A-C **
4215646-T-G 4347605-T-G **
4215556-G-T 4347515-G-T **
4138956-CA-C 4270915-CA-C **
4136921-C-A 4268880-C-A **
4097488-C-A 4229447-C-A **
4078527-A-T 4210486-A-T **
25974655-C-A 23828508-C-A P1_Y1 **
10749016-G-C **
3688599-C-A 3820558-C-A **
2772512-C-CAA 2904471-C-CAA 25×A**
13690219-G-T 11534543-G-T **
2702946-C-A 2834905-C-A **
3286693-T-G 3418652-T-G **
2772544-T-A 2904503-T-A **
2738887-TGAATAGTTG-T 2870846-TGAATAGTTG-T **
3554237-G-T 3686196-G-T **
13472276-A-C 11316600-A-C S14070 ***
9845161-GA-G 10007552-GA-G 10×A***
23987027-G-GA 21840880-G-GA 10×A***
16175816-TA-T 14063936-TA-T 11×A***
9777507-CAAAAAA-C,CAAAAA 9939898-CAAAAAA-C,CAAAAA 17×A***
14273110-TTC-T 12152404-TTC-T ***
13688271-CA-C 11532595-CA-C ***
23350819-A-T 21188933-A-T 12×T***
10744253-A-T ***
17959052-A-AT 15847172-A-AT 10×T***
24424358-G-T 22278211-G-T ***
21827597-C-A 19665711-C-A Y57255 ***
21879394-GGA-G 19717508-GGA-G 8×GA***
13801113-C-CGAATG 11680407-C-CGAATG 12×GAATG***
22023201-CTTTT-C,CTTT 19861315-CTTTT-C,CTTT 20×T***
5613222-TTC-T 5745181-TTC-T ***
56834620-TTCCATTCCATTTCAC-T,TTCCATTCCTCTCCAC ***
23360428-GTATTAT-G 21198542-GTATTAT-G 12×TAT***
17946635-CTTTT-C 15834755-CTTTT-C 20×T***
11665769-G-T ***
22870676-C-A 20708790-C-A ***
14816879-C-CT 12704950-C-CT 8×T***
17279101-C-A 15167221-C-A ***
21690909-CA-C,CAA 19529023-CA-C,CAA 14×A***
10987430-C-A,T ***
16275970-G-T 14164090-G-T ***
15653248-C-A 13541368-C-A ***
3961304-C-A 4093263-C-A ***
8760517-CTTTTT-C,CT 8892476-CTTTTT-C,CT 20×T***
15497186-C-A 13385306-C-A ***
18094304-G-T 15982424-G-T ***
14844644-C-T 12732710-C-T ***
14656154-CAAAAAA-C 12544219-CAAAAAA-C 24×A***
4503042-G-T 4635001-G-T ***
13453123-TCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-T,TCATTCCATTCCATTCCATTCCATTCCATTC 11297447-TCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-T,TCATTCCATTCCATTCCATTCCATTCCATTC 14×CATTC***
13461390-TC-T 11305714-TC-T ***
14464165-ATTT-A,AT 12343438-ATTT-A,AT 18×T***
21603444-GAA-G 19441558-GAA-G 13×A***
13523056-C-A 11367380-C-A ***
14549309-CAAAA-C,CAA 12437510-CAAAA-C,CAA 16×A***
11643720-AATTG-A ***
10748703-A-C ***
10748698-G-A ***
10927671-T-C ***
4223051-C-A 4355010-C-A ***
17515584-T-TAA 15403704-T-TAA 17×A***
8890986-TA-T,TAA 9022945-TA-T,TAA 14×A***
21454204-CAA-C,CA 19292318-CAA-C,CA 18×A***
22703658-A-G 20541772-A-G ***
10801704-T-C ***
22521683-CA-C 20359797-CA-C ***
22430194-T-A 20268308-T-A DYZ19 ***
8216156-C-A 8348115-C-A ***
22210940-G-A 20049054-G-A ***
22185943-CTTT-C,CTT 20024057-CTTT-C,CTT 13×T***
3279760-C-A 3411719-C-A ***
15749575-C-CTT 13637695-C-CTT 15×T***
21650281-A-G 19488395-A-G ***
21235227-CAAAAAAA-C 19073341-CAAAAAAA-C 19×A***
17597154-CT-C,CTT 15485274-CT-C,CTT 20×T***
21085779-CAAAAAA-C 18923893-CAAAAAA-C 24×A***
7418072-TC-T 7550031-TC-T ***
11019401-TTCCAG-T,TTCAAC ***
19532464-C-A 17420584-C-A ***
6887821-A-AT 7019780-A-AT 9×T***
8843536-ATTTT-A,ATTT 8975495-ATTTT-A,ATTT 23×T***
18933225-A-T 16821345-A-T ***
6878073-CAAAA-C 7010032-CAAAA-C 17×A***
56839487-A-C ***
10972004-T-C ***
19477557-GAA-G 17365677-GAA-G 9×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 380474940145077115237621860
Used in age calculations940145077115237621860
Counts of SNPs22
Variant counts last updated 2019-09-27 04:15:59.


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