Llywarch

BigY2: 580878
MDKA Birth: Wales

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF41/S524 > Z43690 > A874 > A875

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
580878
19683671-G-A 17571791-G-A Y29874 P5_Prx A*
24335562-G-A 22189415-G-A P3_t1 A*
25354546-G-A 23208399-G-A A*
26074001-T-C 23927854-T-C P1_Y1 A*
26108301-G-C 23962154-G-C P1_Y1 A*
8982365-G-GT 9144756-G-GT 8×T+
6773562-TTTCC-T 6905521-TTTCC-T 6×TTCC+
8631875-C-A 8763834-C-A S7180PF1557 M5419 YY10×A+
6816070-AT-A 6948029-AT-A +
6988108-C-T 7120067-C-T Y83099 YY+
8205247-C-T 8337206-C-T Y86102 YY+
8441628-G-A 8573587-G-A Y86874 YY+
8594416-C-T 8726375-C-T Y87406 YY+
9384806-G-A 9547197-G-A Y88853 Y+
9693278-A-C 9855669-A-C BY80482 IR3_Prx +
10025843-C-A 10188234-C-A BY83134 Y+
16134024-C-T 14022144-C-T Y95495 P8_Spc +
16212006-C-A 14100126-C-A Y95614 YY+
16330240-G-T 14218360-G-T Y95982 YY+
17048995-C-T 14937115-C-T BY112008 YY+
17048991-TGCCCTGACAGCTTTGG-T 14937111-TGCCCTGACAGCTTTGG-T +
17340448-C-A 15228568-C-A Y98844 YY+
18647124-A-G 16535244-A-G Y102306 YY+
18978365-T-C 16866485-T-C BY125207 YY+
19274255-G-C 17162375-G-C BY127863 YY+
21558444-G-A 19396558-G-A Y106880 YY+
22462594-G-T 20300708-G-T BY171794 DYZ19 +
22557086-C-A 20395200-C-A Y109073 YY+
22557086-CT-C 20395200-CT-C +
24426355-GCTTTCAGATC-G 22280208-GCTTTCAGATC-G +
24874687-G-A 22728540-G-A BY226170 g1 +
28785706-G-A 26639559-G-A BY151253 +
28580355-C-A 26434208-C-A **
5129448-G-A 5261407-G-A PF3601 **
5129449-G-A 5261408-G-A Y1847 **
22485795-A-T 20323909-A-T Z23023 DYZ19 **
13255442-G-T 11099766-G-T **
22815505-G-T 20653619-G-T 20×T**
19528348-A-G 17416468-A-G **
13725991-G-C 11570315-G-C DYZ17 **
21946462-G-A 19784576-G-A **
21639038-TAAAA-T 19477152-TAAAA-T 25×A**
10990160-T-C **
13255422-CT-C 11099746-CT-C **
9771083-C-T 9933474-C-T FT67504 **
17821823-C-A 15709943-C-A **
14473738-C-A 12353007-C-A 14×A**
10663219-G-T **
7269748-A-T 7401707-A-T **
10757345-A-C **
16908444-C-G 14796564-C-G **
15901274-C-A 13789394-C-A **
15171299-A-T 13059385-A-T **
10898550-G-T **
14774288-C-G 12662357-C-G **
16475350-A-G 14363470-A-G **
21713462-A-G 19551576-A-G **
10851004-C-T FT434099 **
10848490-G-T **
9771090-G-T 9933481-G-T **
14392753-G-TTT 12272049-G-TTT **
17511645-G-T 15399765-G-T **
11013575-A-T **
11013581-GC-A **
11013586-T-TA **
11013594-G-T **
11013607-C-T **
11013634-C-A **
14508756-AT-A 12396961-AT-A **
17946656-A-T 15834776-A-T **
10759932-C-T **
10759934-A-T **
22776597-C-A 20614711-C-A **
22869798-C-A 20707912-C-A **
10748433-G-T **
6948253-C-A 7080212-C-A **
16475337-A-G 14363457-A-G **
19472523-G-T 17360643-G-T **
6767813-C-A 6899772-C-A **
6268769-A-AT 6400728-A-AT IR3_Dst **
17239267-C-T 15127387-C-T **
6179621-G-T 6311580-G-T IR3_Dst **
8296920-C-A 8428879-C-A **
14142398-C-A 12021692-C-A **
13305580-C-A 11149904-C-A **
9231576-G-A 9393967-G-A **
15988139-C-A 13876259-C-A **
22113185-C-A 19951299-C-A **
27641442-C-A 25495295-C-A P1_Y2 **
7098009-C-A 7229968-C-A **
28779717-C-A 26633570-C-A **
26478112-G-A 24331965-G-A P1_Y1 **
3571435-G-T 3703394-G-T **
10688274-C-A **
7269749-A-T 7401708-A-T **
17349242-G-C 15237362-G-C **
2669100-ATATATATACATATATACATATATACGTATATATGTATATATATG-A 2801059-ATATATATACATATATACATATATACGTATATATGTATATATATG-A **
2771062-C-A 2903021-C-A **
2810360-A-T 2942319-A-T **
2810365-CA-T 2942324-CA-T **
2833332-C-A 2965291-C-A **
2857034-A-G 2988993-A-G **
2857062-T-C 2989021-T-C **
2857067-A-G 2989026-A-G **
2862883-T-G 2994842-T-G **
2894606-C-G 3026565-C-G **
2932778-C-A 3064737-C-A **
2932785-C-A 3064744-C-A **
3016390-C-A 3148349-C-A **
3093358-T-C 3225317-T-C **
3107593-G-T 3239552-G-T **
3110571-G-T 3242530-G-T **
3218291-T-C 3350250-T-C **
3251950-T-C 3383909-T-C **
3271921-T-A 3403880-T-A **
3410808-A-T 3542767-A-T **
3436352-C-G 3568311-C-G **
3436368-T-C 3568327-T-C **
3627078-A-C 3759037-A-C **
3688899-A-T 3820858-A-T **
3817430-T-A 3949389-T-A **
3830883-C-A 3962842-C-A **
3830884-C-G 3962843-C-G **
3834109-A-G 3966068-A-G **
3836809-C-T 3968768-C-T **
3857239-CT-C 3989198-CT-C **
4075182-A-T 4207141-A-T **
4079650-T-C 4211609-T-C **
4241417-C-A 4373376-C-A **
4315215-A-C 4447174-A-C **
4315251-T-A 4447210-T-A **
4315271-G-T 4447230-G-T **
4470084-C-A 4602043-C-A **
4563379-TG-T 4695338-TG-T **
4585556-C-A 4717515-C-A **
4687775-T-A 4819734-T-A **
4784859-G-T 4916818-G-T **
4812052-A-G 4944011-A-G **
4862503-A-G 4994462-A-G **
4901576-C-A 5033535-C-A **
4902414-G-T 5034373-G-T **
5084456-A-T 5216415-A-T **
5133955-T-C 5265914-T-C **
5294634-A-T 5426593-A-T **
5368263-G-T 5500222-G-T **
5506283-G-T 5638242-G-T **
5526129-C-A 5658088-C-A **
5535021-G-C 5666980-G-C **
5586082-A-G 5718041-A-G **
5593287-C-A 5725246-C-A **
5675442-G-T 5807401-G-T **
5691050-C-A 5823009-C-A **
5958498-G-T 6090457-G-T **
5985566-G-T 6117525-G-T **
6028943-T-A 6160902-T-A **
6040106-T-C 6172065-T-C **
6063400-C-A 6195359-C-A FT221431 **
6105676-G-A 6237635-G-A **
6146308-C-A 6278267-C-A IR3_Dst **
6147441-T-C 6279400-T-C IR3_Dst **
6268764-A-G 6400723-A-G IR3_Dst **
6367629-A-G 6499588-A-G **
6454878-C-T 6586837-C-T **
6773325-A-G 6905284-A-G **
6922648-G-T 7054607-G-T FT345096 **
7090682-C-A 7222641-C-A **
7115405-T-G 7247364-T-G **
7115424-A-C 7247383-A-C **
7127348-A-T 7259307-A-T **
7134776-C-A 7266735-C-A **
7159198-C-A 7291157-C-A **
7160473-C-A 7292432-C-A **
7190695-T-A 7322654-T-A **
7222045-C-A 7354004-C-A **
7222218-C-G 7354177-C-G **
7231094-T-C 7363053-T-C **
7231102-G-A 7363061-G-A **
7231121-A-C 7363080-A-C **
7231127-G-C 7363086-G-C **
7231143-C-T 7363102-C-T **
7231156-A-G 7363115-A-G FT422257 **
7231179-C-T 7363138-C-T **
7231191-T-A 7363150-T-A **
7236556-GC-G 7368515-GC-G **
7311681-C-A 7443640-C-A **
7333056-C-A 7465015-C-A **
7337778-A-G 7469737-A-G **
7428241-G-A 7560200-G-A **
7534429-G-T 7666388-G-T **
7626159-C-A 7758118-C-A **
7704999-G-A 7836958-G-A **
7820927-T-C 7952886-T-C **
7917248-C-A 8049207-C-A **
7975983-C-A 8107942-C-A **
7990879-T-C 8122838-T-C **
8001925-C-A 8133884-C-A **
8112464-C-G 8244423-C-G **
8158056-C-A 8290015-C-A **
8170163-C-A 8302122-C-A **
8281855-T-C 8413814-T-C **
8428941-C-A 8560900-C-A **
8658313-G-C 8790272-G-C **
8678396-C-A 8810355-C-A **
8679146-TA-T 8811105-TA-T **
8702840-GA-G 8834799-GA-G **
8715136-A-G 8847095-A-G **
8715138-A-G 8847097-A-G **
8715158-G-A 8847117-G-A **
8719272-A-T 8851231-A-T **
8735601-G-A 8867560-G-A **
8793030-G-T 8924989-G-T FT84852 **
8831218-C-A 8963177-C-A **
8854082-T-C 8986041-T-C **
8855434-G-A 8987393-G-A **
8914545-C-A 9046504-C-A **
9110167-C-A **
9068989-A-G 9231380-A-G **
9080270-T-G 9242661-T-G **
9231583-A-C 9393974-A-C **
9364202-T-C 9526593-T-C **
9430219-G-T 9592610-G-T **
9437129-G-A 9599520-G-A **
9453086-A-G 9615477-A-G **
9465426-C-A 9627817-C-A **
9499029-T-G 9661420-T-G **
9618238-G-C 9780629-G-C IR3_Prx **
9618240-T-C 9780631-T-C IR3_Prx **
9618244-T-C 9780635-T-C IR3_Prx **
9618245-G-C 9780636-G-C IR3_Prx **
9618250-T-C 9780641-T-C IR3_Prx **
9618307-G-A 9780698-G-A IR3_Prx **
9639094-T-TTGTG 9801485-T-TTGTG IR3_Prx 19×TG**
9685949-C-T 9848340-C-T IR3_Prx **
9732893-C-A 9895284-C-A IR3_Prx **
9765308-A-G 9927699-A-G **
9771072-A-G 9933463-A-G **
9843169-A-C 10005560-A-C **
9956342-G-A 10118733-G-A **
9986097-C-A 10148488-C-A **
10005994-C-A 10168385-C-A **
10023322-T-C 10185713-T-C **
10023373-C-G 10185764-C-G **
10023390-A-T 10185781-A-T **
10023394-G-C 10185785-G-C **
10032283-C-A 10194674-C-A **
10655467-C-T **
10666046-T-G **
10667178-C-A **
10676958-C-A **
10688199-C-G **
10688212-T-C **
10688241-A-AGTCTGCTCTT **
10688260-C-T **
10688282-T-C FT344871 **
10690338-C-G **
10744930-C-A **
10745803-C-A **
10746184-A-C **
10752500-A-C **
10761599-A-G **
10766324-T-C **
10768972-C-A **
10771529-C-T **
10771530-A-G **
10771536-C-T **
10771544-C-T **
10772607-G-A FT430538 **
10772651-C-A **
10772653-T-A **
10772677-A-G **
10782709-C-A **
10785028-C-A **
10793593-A-C **
10796973-A-C **
10797777-C-A **
10799670-C-A **
10802958-G-T **
10807595-C-A **
10808538-C-A **
10811282-T-C **
10811291-T-G **
10811308-T-TCCACG **
10811334-C-G **
10812918-C-A **
10816538-A-T **
10825392-C-T **
10827596-A-G FT432987 **
10830208-C-A **
10835194-T-A **
10835325-C-G **
10836914-C-A **
10838394-A-C **
10841446-C-A **
10841722-C-A **
10841767-C-A **
10844564-A-C **
10846869-A-C **
10847120-T-C **
10850990-CTGTCA-C **
10851002-C-T **
10851007-C-A **
10859893-C-CTCCTT **
10860450-C-A **
10862749-G-T **
10865006-T-C **
10865007-C-G **
10879625-A-T **
10889733-T-C **
10892012-A-T **
10898552-G-C **
10898555-T-C **
10902882-G-T **
10924953-T-A **
10926508-T-A **
10928865-A-C **
10928945-C-A **
10929239-T-A **
10929840-A-G **
10934947-A-G **
10936573-G-T **
10943652-A-G **
10944468-C-A FT227877 **
10945194-T-C **
10945722-C-A **
10948581-C-T **
10948586-C-T **
10948605-C-T **
10948622-A-T **
10948639-T-C **
10949499-A-C **
10963775-C-A **
10977063-C-G **
10978194-A-C FT438923 **
10987539-C-A **
10992445-A-G **
10995949-A-C **
10995969-C-A **
10996169-T-A **
10996180-C-G **
10999313-TG-T **
11000326-G-T **
11002165-G-T **
11007858-G-T **
11016944-A-C **
11027285-C-G **
11029210-T-C **
11029958-C-A **
11034428-C-A **
11035365-T-C **
11035412-C-A **
11037373-T-C **
13196979-C-A 11041303-C-A **
13198833-G-C 11043157-G-C **
13291587-G-A 11135911-G-A **
13318041-T-A 11162365-T-A **
13326217-C-A 11170541-C-A **
13329605-A-G 11173929-A-G **
13394810-C-A 11239134-C-A **
13402446-T-C 11246770-T-C **
13446439-C-A 11290763-C-A **
13461537-C-T 11305861-C-T **
13490782-GA-G 11335106-GA-G 9×A**
13503464-C-T 11347788-C-T **
13507029-G-A 11351353-G-A **
13526379-A-C 11370703-A-C **
13527594-G-A 11371918-G-A **
13602149-C-A 11446473-C-A **
13703818-C-A 11548142-C-A BY211153 DYZ17 **
11669681-A-G DYZ17 **
11671932-T-A DYZ17 **
11671962-T-A DYZ17 **
11672046-C-A DYZ17 **
11675771-T-A DYZ17 **
13880882-C-A 11760176-C-A **
13884906-A-C 11764200-A-C **
13888901-G-T 11768195-G-T **
13923177-C-CAA 11802471-C-CAA **
13935722-C-A 11815016-C-A **
13941067-G-A 11820361-G-A **
13952566-T-C 11831860-T-C **
14144244-T-G 12023538-T-G **
14174739-A-G 12054033-A-G **
14176027-T-C 12055321-T-C **
14216297-C-A 12095591-C-A **
14267150-T-C 12146444-T-C **
14340863-C-A 12220158-C-A **
14367850-C-T 12247146-C-T **
14392769-C-T 12272065-C-T **
14395655-G-C 12274951-G-C **
14405852-C-A 12285149-C-A **
14432066-C-G 12311339-C-G **
14447428-C-A 12326701-C-A **
14515266-C-A 12403471-C-A **
14515594-G-T 12403795-G-T **
14518441-T-A 12406642-T-A **
14526685-C-A 12414886-C-A **
14561366-AC-A 12449567-AC-A **
14606601-C-A 12494803-C-A **
14627119-C-A 12515187-C-A **
14658233-A-T 12546298-A-T **
14722335-T-C 12610403-T-C **
14757754-C-A 12645823-C-A **
14765698-G-TTT 12653767-G-TTT **
14779570-C-T 12667640-C-T **
14779581-G-A 12667651-G-A **
14779598-G-T 12667668-G-T **
14779606-A-C 12667676-A-C **
14779617-T-C 12667687-T-C **
14784292-A-T 12672362-A-T **
14831751-A-C 12719818-A-C **
14884696-C-A 12772762-C-A **
14884697-TGA-T 12772763-TGA-T **
15051320-G-T 12939411-G-T **
15059901-T-A 12947993-T-A **
15081512-TA-T 12969602-TA-T **
15172619-A-T 13060705-A-T **
15172717-T-C 13060803-T-C **
15198651-C-A 13086737-C-A **
15218578-A-C 13106664-A-C **
15218583-C-A 13106669-C-A **
15218631-C-G 13106717-C-G **
15220847-T-C 13108933-T-C **
15220894-G-C 13108980-G-C **
15220900-A-C 13108986-A-C **
15220922-T-G 13109008-T-G **
15220964-G-C 13109050-G-C **
15231008-C-T 13119094-C-T **
15258873-A-G 13146957-A-G **
15277265-C-A 13165354-C-A **
15280275-A-G 13168374-A-G **
15286064-T-A 13174163-T-A **
15360728-C-A 13248848-C-A **
15387975-A-C 13276095-A-C **
15442412-T-C 13330532-T-C **
15452136-C-A 13340256-C-A **
15468460-C-T 13356580-C-T **
15615831-A-G 13503951-A-G BY161987 **
15642918-C-A 13531038-C-A **
15741143-C-A 13629263-C-A **
15741153-A-C 13629273-A-C **
15741171-C-A 13629291-C-A **
15863125-T-C 13751245-T-C **
15903957-C-A 13792077-C-A **
15980200-C-A 13868320-C-A **
15999859-C-G 13887979-C-G **
16015569-A-G 13903689-A-G **
16034253-C-T 13922373-C-T **
16046537-T-C 13934657-T-C **
16351584-C-A 14239704-C-A **
16413571-C-A 14301691-C-A **
16437562-C-A 14325682-C-A **
16475336-T-A 14363456-T-A **
16481051-T-C 14369171-T-C **
16588290-C-A 14476410-C-A **
16624604-A-G 14512724-A-G **
16760005-C-A 14648125-C-A **
16782114-C-A 14670234-C-A **
16782169-G-A 14670289-G-A **
16811201-T-A 14699321-T-A **
16829205-C-T 14717325-C-T **
16912565-A-C 14800685-A-C **
16913409-C-T 14801529-C-T BY111060 **
16913418-G-A 14801538-G-A **
16996875-T-A 14884995-T-A **
17030605-G-A 14918725-G-A **
17030606-AG-A 14918726-AG-A **
17038708-C-A 14926828-C-A **
17043121-C-A 14931241-C-A **
17084355-T-C 14972475-T-C **
17093808-G-T 14981928-G-T **
17110231-C-A 14998351-C-A **
17115024-C-A 15003144-C-A **
17128209-T-A 15016329-T-A **
17147418-C-A 15035538-C-A **
17280003-C-A 15168123-C-A **
17285302-C-A 15173422-C-A **
17318159-C-G 15206279-C-G **
17349187-A-G 15237307-A-G **
17349197-C-A 15237317-C-A **
17349231-G-A 15237351-G-A **
17349237-T-C 15237357-T-C **
17349238-G-A 15237358-G-A **
17349245-G-T 15237365-G-T **
17349264-C-T 15237384-C-T **
17355566-G-T 15243686-G-T **
17376005-G-T 15264125-G-T **
17376220-T-C 15264340-T-C **
17446767-CTTTTTTTTTTTTTTTTTTTT-C 15334887-CTTTTTTTTTTTTTTTTTTTT-C 33×T**
17503799-C-T 15391919-C-T **
17511583-A-C 15399703-A-C **
17511598-T-G 15399718-T-G **
17511608-C-T 15399728-C-T **
17511614-A-T 15399734-A-T **
17511634-C-A 15399754-C-A **
17527438-G-GTGTATA 15415558-G-GTGTATA 18×TA**
17546151-C-G 15434271-C-G **
17548721-C-A 15436841-C-A **
17580914-C-T 15469034-C-T **
17580921-G-T 15469041-G-T **
17589151-T-C 15477271-T-C **
17629776-C-G 15517896-C-G **
17638268-T-G 15526388-T-G **
17676354-T-C 15564474-T-C **
17764032-C-A 15652152-C-A **
17770678-C-A 15658798-C-A **
17786064-C-A 15674184-C-A **
17821821-T-A 15709941-T-A **
17874666-C-A 15762786-C-A **
17955960-C-A 15844080-C-A **
18003289-C-A 15891409-C-A FT267400 P7_Gap **
18039652-G-A 15927772-G-A Y101055 **
18050480-C-G 15938600-C-G **
18085420-C-A 15973540-C-A **
18243929-C-A 16132049-C-A **
18328664-T-A 16216784-T-A P6_Prx **
18328806-T-A 16216926-T-A P6_Prx **
18389288-C-A 16277408-C-A P6_Gap **
18398190-C-T 16286310-C-T P6_Gap **
18480328-A-G 16368448-A-G P6_Dst **
18531179-C-A 16419299-C-A P6_Dst **
18628199-C-T 16516319-C-T **
18635719-A-C 16523839-A-C **
18650472-C-A 16538592-C-A **
18650742-T-A 16538862-T-A FT291436 **
18688191-T-C 16576311-T-C **
18688220-G-A 16576340-G-A **
18703171-C-A 16591291-C-A **
18748721-C-A 16636841-C-A **
18779249-T-C 16667369-T-C **
18820320-C-A 16708440-C-A **
18996638-G-T 16884758-G-T **
19071850-G-T 16959970-G-T **
19086086-C-A 16974206-C-A **
19254428-T-A 17142548-T-A **
19261127-A-T 17149247-A-T **
19280750-T-A 17168870-T-A **
19293922-C-A 17182042-C-A FTB37859 **
19322141-A-G 17210261-A-G **
19346788-C-A 17234908-C-A **
19378026-T-A 17266146-T-A **
19411960-A-AAGAG 17300080-A-AAGAG **
19463876-T-C 17351996-T-C **
19463889-T-A 17352009-T-A **
19463970-C-T 17352090-C-T **
19479163-A-C 17367283-A-C **
19479200-C-T 17367320-C-T **
19479203-A-C 17367323-A-C **
19479246-T-C 17367366-T-C **
19486876-GA-G 17374996-GA-G **
19527134-C-A 17415254-C-A **
19537978-A-T 17426098-A-T **
19709585-C-T 17597705-C-T P5_Prx **
19731078-C-G 17619198-C-G P5_Prx **
19731133-T-A 17619253-T-A P5_Prx **
20242356-G-T 18080470-G-T P5_Dst **
20300964-G-C 18139078-G-C P5_Dst **
20603965-A-T 18442079-A-T P5_Dst **
20654942-T-G 18493056-T-G P4_Prx **
20654947-A-T 18493061-A-T P4_Prx **
20834010-A-T 18672124-A-T P4_Gap **
21138733-A-G 18976847-A-G **
21153639-C-T 18991753-C-T **
21164709-C-A 19002823-C-A **
21208819-G-C 19046933-G-C **
21212011-C-A 19050125-C-A **
21212250-C-T 19050364-C-T **
21241734-A-G 19079848-A-G **
21295235-T-C 19133349-T-C **
21354061-T-C 19192175-T-C **
21511086-A-T 19349200-A-T **
21531627-C-A 19369741-C-A **
21554426-G-A 19392540-G-A **
21581905-C-T 19420019-C-T **
21582033-T-C 19420147-T-C **
21665591-C-A 19503705-C-A **
21769065-ATCC-A 19607179-ATCC-A **
21804066-T-C 19642180-T-C **
21818824-C-T 19656938-C-T **
21824927-TAGGGGA-T 19663041-TAGGGGA-T **
21839998-A-G 19678112-A-G **
21840009-G-T 19678123-G-T **
21902214-G-A 19740328-G-A **
21922063-A-G 19760177-A-G **
21926455-C-A 19764569-C-A **
21987220-A-C 19825334-A-C **
21991411-T-A 19829525-T-A **
21991417-A-C 19829531-A-C **
22048521-T-G 19886635-T-G **
22113184-T-C 19951298-T-C **
22172859-A-G 20010973-A-G **
22201777-C-A 20039891-C-A **
22263935-T-C 20102049-T-C DYZ19 **
22484699-A-T 20322813-A-T DYZ19 **
22485101-C-A 20323215-C-A DYZ19 **
22505719-T-C 20343833-T-C DYZ19 **
22548163-C-A 20386277-C-A **
22577917-C-A 20416031-C-A **
22581225-G-T 20419339-G-T **
22592108-T-C 20430222-T-C **
22689839-T-C 20527953-T-C **
22766402-A-C 20604516-A-C **
22766403-G-T 20604517-G-T **
22766407-G-T 20604521-G-T **
22766432-GC-G 20604546-GC-G **
22766439-G-T 20604553-G-T **
22766441-C-T 20604555-C-T **
22766449-T-C 20604563-T-C **
22766468-T-A 20604582-T-A **
22775524-C-A 20613638-C-A **
22810805-C-A 20648919-C-A **
22955180-G-T 20793294-G-T **
22970278-G-C 20808392-G-C **
23009873-A-G 20847987-A-G **
23142906-A-G 20981020-A-G Y110781 **
23204866-C-A 21042980-C-A **
23231537-T-G 21069651-T-G **
23300552-A-G 21138666-A-G **
23310569-A-C 21148683-A-C **
23360575-C-A 21198689-C-A **
23434237-A-G 21272351-A-G **
23465449-C-A 21303563-C-A **
23493467-C-A 21331581-C-A **
23625418-G-T 21463532-G-T **
23841223-A-G 21679337-A-G **
21754201-G-T **
21780300-T-A **
23965300-T-C 21819153-T-C Y112508 **
24074186-A-C 21928039-A-C P3_b1 **
24262082-C-T 22115935-C-T P3_b1 **
24262110-T-TA 22115963-T-TA P3_b1 **
24264534-AG-A 22118387-AG-A P3_b1 **
24384068-T-C 22237921-T-C **
24514210-G-T 22368063-G-T **
24590395-TG-T 22444248-TG-T P3_t2 **
24891067-G-T 22744920-G-T g1 **
25029924-G-C 22883777-G-C g1 **
25590988-A-G 23444841-A-G P1_gr1 **
25898360-A-G 23752213-A-G P1_Y1 **
26153783-C-A 24007636-C-A P1_Y1 **
26205798-G-T 24059651-G-T P1_Y1 **
26262630-T-C 24116483-T-C P1_Y1 **
26463123-T-TACAGG 24316976-T-TACAGG P1_Y1 **
26716047-A-G 24569900-A-G P1_g2 **
26716070-C-G 24569923-C-G P1_g2 **
26716082-T-C 24569935-T-C P1_g2 **
26716090-A-T 24569943-A-T P1_g2 **
27647748-T-C 25501601-T-C P1_Y2 **
27713394-G-T 25567247-G-T P1_Y2 **
27823829-C-A 25677682-C-A P1_Y2 **
28480976-A-T 26334829-A-T **
28556361-T-C 26410214-T-C **
28580365-C-A 26434218-C-A **
28608338-A-T 26462191-A-T **
28654042-C-A 26507895-C-A **
28656624-A-T 26510477-A-T **
28727345-A-G 26581198-A-G **
28767804-G-A 26621657-G-A **
56841832-T-C **
56841885-A-G **
56846046-A-T **
56846072-T-A **
56846073-T-C **
56846078-C-A **
56846081-C-A **
56846082-C-G **
56848525-C-A **
56848538-C-A **
56848553-T-A **
56848554-T-C **
56848559-C-G **
56848621-G-C **
56848770-A-C **
56848771-T-C **
56861283-G-A **
24277-C-A FGC80329 **
33943-G-T **
16545657-C-T 14433777-C-T ***
7100861-C-A 7232820-C-A ***
21923316-C-T 19761430-C-T ***
21996398-G-T 19834512-G-T ***
21923322-G-T 19761436-G-T ***
24312-A-G ***
7508945-C-A 7640904-C-A ***
4241480-C-A 4373439-C-A ***
23599900-C-A 21438014-C-A FTB73106 ***
2686623-G-A 2818582-G-A ***
2702844-A-G 2834803-A-G ***
2812700-C-A 2944659-C-A ***
3593395-C-A 3725354-C-A ***
4805004-C-A 4936963-C-A ***
6144755-C-A 6276714-C-A IR3_Dst ***
6734417-C-A 6866376-C-A ***
7152680-C-A 7284639-C-A ***
7166776-C-A 7298735-C-A ***
7228606-C-A 7360565-C-A ***
7472591-TA-T 7604550-TA-T IR1_L 10×A***
7489113-G-T 7621072-G-T IR1_L ***
7705035-C-A 7836994-C-A ***
7970854-A-T 8102813-A-T ***
7970859-C-T 8102818-C-T ***
7978534-T-C 8110493-T-C ***
8138366-C-A 8270325-C-A ***
8350636-C-A 8482595-C-A ***
8379686-G-T 8511645-G-T ***
8649990-G-A 8781949-G-A ***
9811072-G-A 9973463-G-A ***
10744528-G-C FGC81116 ***
10847096-T-A ***
10855821-C-A ***
10858711-A-T ***
10861113-C-A ***
10878200-G-T ***
10931704-C-A ***
10990085-C-CCGCTT ***
11027307-A-G FT183144 ***
13468225-T-G 11312549-T-G ***
13475589-C-A 11319913-C-A ***
13486826-G-T 11331150-G-T ***
13557927-C-A 11402251-C-A ***
13571624-G-C 11415948-G-C ***
13639796-C-A 11484120-C-A ***
14099328-C-A 11978622-C-A ***
14340942-C-A 12220237-C-A BY11614 ***
14557808-C-A 12446009-C-A ***
15109009-C-A 12997096-C-A ***
15324617-C-A 13212735-C-A ***
15369017-C-A 13257137-C-A ***
15702140-G-T 13590260-G-T ***
15947921-C-A 13836041-C-A ***
16179962-C-A 14068082-C-A ***
16302635-C-T 14190755-C-T ***
16680708-A-T 14568828-A-T ***
16848685-C-A 14736805-C-A ***
17152980-C-A 15041100-C-A ***
17882968-G-A 15771088-G-A ***
17908205-A-G 15796325-A-G ***
18400744-C-A 16288864-C-A P6_Gap ***
18660455-T-A 16548575-T-A ***
18709908-C-A 16598028-C-A ***
18786201-C-A 16674321-C-A ***
18994682-A-G 16882802-A-G ***
19225822-A-G 17113942-A-G ***
19407464-C-A 17295584-C-A ***
19430058-C-A 17318178-C-A ***
19536718-A-T 17424838-A-T ***
20334951-G-T 18173065-G-T P5_Dst ***
21139958-C-A 18978072-C-A ***
21141596-G-A 18979710-G-A FT181945 ***
21813901-C-A 19652015-C-A ***
22562867-C-A 20400981-C-A ***
22575190-A-G 20413304-A-G ***
22645631-CTA-C,CTATA 20483745-CTA-C,CTATA ***
22649262-T-C 20487376-T-C ***
22730040-C-G 20568154-C-G ***
22737229-G-T 20575343-G-T ***
22785596-T-A 20623710-T-A ***
22835395-CA-C 20673509-CA-C ***
22857966-AT-A 20696080-AT-A 8×T***
23528889-T-A 21367003-T-A ***
23650817-C-A 21488931-C-A ***
25727942-C-A 23581795-C-A P1_b3 ***
28531898-C-A 26385751-C-A ***
56840018-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.