Brown

BigY2: 125139
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC5494

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
125139
26401991-C-T 24255844-C-T P1_Y1 A*
22306194-A-C 20144308-A-C DYZ19 A*
25947067-A-G 23800920-A-G P1_Y1 A*
22454248-G-A 20292362-G-A DYZ19 A*
6107214-T-G 6239173-T-G A*
22508643-G-C 20346757-G-C BY196894 DYZ19 +
21566422-C-A 19404536-C-A Y136873 YY+
21749505-T-G 19587619-T-G Y136879 YY+
22461685-C-A 20299799-C-A BY220726 DYZ19 +
22479441-T-G 20317555-T-G DYZ19 +
22508631-G-T 20346745-G-T BY171817 DYZ19 +
18034981-A-G 15923101-A-G Y136898 YY+
22508652-T-A 20346766-T-A BY44088 DYZ19 +
22508654-T-G 20346768-T-G BY44090 DYZ19 +
2756036-TC-T 2887995-TC-T +
2747656-A-G 2879615-A-G Y136903 YY+
15580330-C-T 13468450-C-T Y68494 YY+
15024514-G-A 12912602-G-A Y136874 YY+
14920590-G-A 12808655-G-A Y40729 YY+
14835658-G-A 12723725-G-A Y136867 YY+
23955670-C-A 21809523-C-A Y136881 +
21168287-G-A 19006401-G-A Y136870 YY+
21127732-C-T 18965846-C-T Y136897 YY+
20827124-C-T 18665238-C-T Y136875 P4_Gap +
8529913-C-T 8661872-C-T Y136877 YY+
17956935-A-C 15845055-A-C Y136876 YY+
17756317-G-A 15644437-G-A Y136894 YY+
24444958-C-T 22298811-C-T FGC37926 BY2274 Y+
6947759-C-CT 7079718-C-CT 9×T+
18421099-G-T 16309219-G-T Y136896 P6_Gap +
18427356-G-C 16315476-G-C Y136889 P6_Gap +
22508653-T-A 20346767-T-A BY44089 DYZ19 +
7596400-C-T 7728359-C-T Y136869 YY+
9132573-G-T 9294964-G-T Y136872 Y+
18940289-G-A 16828409-G-A Y136904 YY+
19033297-T-C 16921417-T-C Y136891 YY+
6974194-T-A 7106153-T-A Y136887 YY+
16906158-T-G 14794278-T-G Y136901 YY+
19348207-C-A 17236327-C-A Y136871 YY+
19416046-G-A 17304166-G-A Y136886 Y+
23871115-T-C 21709229-T-C Y136893 Y+
13647966-G-GAATGAAATGGACTCA 11492290-G-GAATGAAATGGACTCA *
22340705-G-T 20178819-G-T DYZ19 *
22281299-A-C 20119413-A-C BY216017 DYZ19 *
22281298-G-T 20119412-G-T BY216016 DYZ19 *
22264183-A-T 20102297-A-T DYZ19 *
13647971-G-A 11492295-G-A *
28810862-G-T 26664715-G-T *
22225395-C-T 20063509-C-T Y6789 DYZ19 *
22230375-A-T 20068489-A-T DYZ19 *
16673115-C-T 14561235-C-T **
16572817-C-A 14460937-C-A **
16578189-C-A 14466309-C-A **
14079788-C-A 11959082-C-A **
16603432-C-A 14491552-C-A **
16651996-G-T 14540116-G-T **
16654718-G-A 14542838-G-A **
16662423-C-A 14550543-C-A **
14533334-C-A 12421535-C-A **
16540072-C-A 14428192-C-A **
16680653-T-C 14568773-T-C **
16747501-C-T 14635621-C-T **
16760090-C-A 14648210-C-A **
16763855-C-A 14651975-C-A **
14078872-G-T 11958166-G-T **
16778033-C-T 14666153-C-T **
16781371-C-A 14669491-C-A **
16824903-T-A 14713023-T-A **
14088428-T-G 11967722-T-G **
16462739-C-A 14350859-C-A **
16528364-C-A 14416484-C-A **
16305769-C-CAAA 14193889-C-CAAA **
16211038-T-A 14099158-T-A **
16211067-T-G 14099187-T-G **
16211124-G-C 14099244-G-C **
16211127-A-C 14099247-A-C **
16270700-G-T 14158820-G-T **
16278673-C-A 14166793-C-A **
16290803-A-ACACCAC 14178923-A-ACACCAC **
16305790-T-C 14193910-T-C **
16471640-G-C 14359760-G-C **
14151587-T-G 12030881-T-G **
16305806-T-C 14193926-T-C **
16305823-G-T 14193943-G-T **
16307670-C-A 14195790-C-A **
14149285-C-A 12028579-C-A **
16318725-G-T 14206845-G-T **
16320335-G-T 14208455-G-T **
16842552-C-A 14730672-C-A **
14038003-C-A 11917297-C-A **
13994966-GA-G 11874260-GA-G **
13997570-C-A 11876864-C-A **
17580695-C-A 15468815-C-A **
17494617-C-T 15382737-C-T **
17512459-A-G 15400579-A-G **
17524185-C-A 15412305-C-A **
17561344-G-A 15449464-G-A **
17567369-A-T 15455489-A-T **
17569101-C-A 15457221-C-A **
11675567-G-T **
17638151-T-C 15526271-T-C **
13898754-GTTTTTTT-G 11778048-GTTTTTTT-G 26×T**
17638225-C-A 15526345-C-A **
17641438-G-T 15529558-G-T **
17692172-C-A 15580292-C-A **
17713884-C-A 15602004-C-A **
11658647-G-T **
17770225-G-T 15658345-G-T **
13721305-G-A 11565629-G-A **
13705408-A-G 11549732-A-G **
17464737-G-T 15352857-G-T **
17414867-A-T 15302987-A-T **
16060297-T-G 13948417-T-G **
13935630-A-C 11814924-A-C **
16930693-G-T 14818813-G-T **
16931951-C-A 14820071-C-A **
13974198-G-T 11853492-G-T **
16938214-TTTTC-T 14826334-TTTTC-T **
16962699-C-T 14850819-C-T **
17083033-T-A 14971153-T-A **
17210013-C-A 15098133-C-A **
17210117-A-G 15098237-A-G **
17413338-T-A 15301458-T-A **
17218253-A-C 15106373-A-C **
13927841-C-G 11807135-C-G **
17277916-C-A 15166036-C-A **
17280087-G-T 15168207-G-T **
17354771-A-G 15242891-A-G Y136878 **
17376741-A-T 15264861-A-T **
17380603-A-C 15268723-A-C **
17386733-C-A 15274853-C-A **
16060312-C-T 13948432-C-T **
16056070-G-C 13944190-G-C **
16060047-C-T 13948167-C-T **
15302784-C-A 13190883-C-A **
15126791-T-C 13014878-T-C **
15132135-C-A 13020222-C-A **
15151767-A-C 13039854-A-C **
15161167-C-A 13049253-C-A **
15242574-C-A 13130660-C-A **
15259337-T-G 13147421-T-G **
15285862-C-A 13173961-C-A **
15324353-AT-A 13212471-AT-A **
15065804-T-C 12953896-T-C **
15324359-GA-C 13212477-GA-C **
15358665-G-A 13246784-G-A **
15371014-C-A 13259134-C-A Y68132 **
15380212-T-G 13268332-T-G **
15396495-G-A 13284615-G-A **
15423745-T-C 13311865-T-C **
15430718-C-A 13318838-C-A **
15449923-T-G 13338043-T-G **
15126268-C-A 13014355-C-A **
15045814-A-T 12933904-A-T **
14379064-C-A 12258360-C-A **
14729802-G-A 12617870-G-A **
14537747-C-A 12425948-C-A **
14538662-C-A 12426863-C-A **
14548107-T-G 12436308-T-G **
14606299-C-A 12494501-C-A **
14635748-G-T 12523817-G-T **
14717693-C-T 12605761-C-T **
14717728-C-A 12605796-C-A **
14717733-C-A 12605801-C-A **
14741904-G-T 12629972-G-T **
14391698-A-T 12270994-A-T **
14743931-T-A 12632000-T-A **
14776921-T-C 12664990-T-C **
14776956-C-T 12665025-C-T **
14785684-C-A 12673754-C-A **
14490365-A-G 12369634-A-G **
14893972-C-CTT 12782038-C-CTT 11×T**
14910936-A-T 12799003-A-T **
14457575-C-T 12336848-C-T **
15575178-C-A 13463298-C-A **
15588740-T-C 13476860-T-C **
14511424-C-T 12399629-C-T **
15870595-C-T 13758715-C-T Z44417 **
15860051-C-G 13748171-C-G **
15860052-A-T 13748172-A-T **
15860055-T-A 13748175-T-A **
15865549-C-A 13753669-C-A 22×T**
15865615-A-C 13753735-A-C **
15865626-C-T 13753746-C-T **
15866874-C-A 13754994-C-A **
15894581-G-A 13782701-G-A **
15860032-G-A 13748152-G-A BY162038 **
15894596-A-G 13782716-A-G **
15894600-G-A 13782720-G-A **
15894605-A-C 13782725-A-C **
15894634-T-C 13782754-T-C **
16005313-T-G 13893433-T-G **
14184339-C-G 12063633-C-G **
16020717-G-A 13908837-G-A **
16033712-C-A 13921832-C-A **
15860043-T-G 13748163-T-G **
15859428-G-T 13747548-G-T **
14379059-A-C 12258355-A-C **
14296411-C-G 12175705-C-G **
14352212-C-A 12231507-C-A **
15588745-G-C 13476865-G-C **
14330795-C-T 12210089-C-T **
14305358-G-T 12184652-G-T **
14302203-G-T 12181497-G-T **
14302105-T-G 12181399-T-G **
15635794-G-A 13523914-G-A **
14302099-T-G 12181393-T-G **
14289604-T-C 12168898-T-C **
15831571-C-A 13719691-C-A **
15683770-G-A 13571890-G-A **
14283245-T-G 12162539-T-G **
14249175-TG-T 12128469-TG-T **
14234654-G-A 12113948-G-A **
14196434-C-T 12075728-C-T **
15699885-T-G 13588005-T-G **
15776049-C-A 13664169-C-A **
18019855-G-T 15907975-G-T **
15801651-A-C 13689771-A-C **
22868285-T-A 20706399-T-A 27×A**
18019857-C-A 15907977-C-A **
23086858-T-G 20924972-T-G **
22865158-G-A 20703272-G-A **
22868266-C-T 20706380-C-T **
22868275-A-G 20706389-A-G **
22868283-C-A 20706397-C-A **
22886333-C-A 20724447-C-A **
23004935-G-T 20843049-G-T **
23052463-C-A 20890577-C-A **
23061125-C-A 20899239-C-A **
23096733-C-T 20934847-C-T **
22804102-C-G 20642216-C-G **
23128879-C-A 20966993-C-A **
23128886-C-A 20967000-C-A **
23151408-C-A 20989522-C-A **
23190348-A-T 21028462-A-T **
23253177-C-A 21091291-C-A **
23272372-T-C 21110486-T-C **
23309447-C-A 21147561-C-A **
23316130-C-A 21154244-C-A **
22815503-C-G 20653617-C-G **
22804040-C-T 20642154-C-T **
23391584-C-T 21229698-C-T **
22508731-G-T 20346845-G-T DYZ19 **
22128552-C-T 19966666-C-T **
22128559-C-T 19966673-C-T **
22128585-G-A 19966699-G-A **
22132309-A-G 19970423-A-G **
22309847-A-T 20147961-A-T DYZ19 **
22484001-C-G 20322115-C-G DYZ19 **
22508726-G-C 20346840-G-C DYZ19 **
22508727-A-G 20346841-A-G DYZ19 **
22527203-C-A 20365317-C-A **
22794011-C-A 20632125-C-A **
22564553-TC-T 20402667-TC-T **
22634817-G-T 20472931-G-T **
22722398-G-C 20560512-G-C **
22722481-G-T 20560595-G-T **
22722501-A-T 20560615-A-T **
22722529-G-T 20560643-G-T **
22727296-C-A 20565410-C-A **
22730015-T-A 20568129-T-A **
22732771-A-T 20570885-A-T **
23343593-C-A 21181707-C-A **
23391587-A-C 21229701-A-C **
22113208-A-AG 19951322-A-AG **
28731921-T-C 26585774-T-C **
28635947-A-C 26489800-A-C **
28643444-C-A 26497297-C-A **
28650151-C-A 26504004-C-A **
28657120-G-A 26510973-G-A **
28657574-C-A 26511427-C-A **
28701744-G-A 26555597-G-A **
28711996-G-T 26565849-G-T **
28720009-C-A 26573862-C-A **
28757870-A-G 26611723-A-G **
28614262-C-T 26468115-C-T **
28759715-T-C 26613568-T-C **
28764364-C-T 26618217-C-T **
28773933-T-G 26627786-T-G **
28782165-T-C 26636018-T-C **
28798357-A-C 26652210-A-C **
56756845-A-G **
56841886-C-A **
56845068-T-A **
28614271-A-G 26468124-A-G **
28596823-C-A 26450676-C-A **
23493611-C-A 21331725-C-A **
25356482-G-A 23210335-G-A P2_r2 **
23493613-C-A 21331727-C-A **
23609460-G-T 21447574-G-T **
23834777-G-A 21672891-G-A **
23857101-A-T 21695215-A-T **
24371980-A-G 22225833-A-G **
24403188-C-A 22257041-C-A **
24492504-G-A 22346357-G-A **
24879646-G-T 22733499-G-T g1 **
25955585-C-A 23809438-C-A P1_Y1 **
28558474-C-A 26412327-C-A **
26248883-T-C 24102736-T-C P1_Y1 **
26355410-C-A 24209263-C-A P1_Y1 **
26415896-G-T 24269749-G-T P1_Y1 **
27396997-G-T 25250850-G-T P1_g3 **
27756273-C-A 25610126-C-A P1_Y2 **
27782791-T-A 25636644-T-A P1_Y2 **
27839254-C-T 25693107-C-T P1_Y2 **
28483509-T-C 26337362-T-C **
28506139-G-A 26359992-G-A **
22122997-A-T 19961111-A-T **
22103569-A-C 19941683-A-C **
18019870-C-G 15907990-C-G **
19023370-C-A 16911490-C-A **
18872146-C-T 16760266-C-T **
18891287-C-A 16779407-C-A **
18921670-C-A 16809790-C-A **
18928506-C-A 16816626-C-A Y103073 **
18931844-C-A 16819964-C-A **
18976582-C-T 16864702-C-T **
18980572-G-T 16868692-G-T **
19021614-T-A 16909734-T-A **
19231344-GA-T 17119464-GA-T **
18867290-T-C 16755410-T-C **
19247093-C-A 17135213-C-A **
19304266-C-G 17192386-C-G **
19338272-C-A 17226392-C-A **
19365339-C-A 17253459-C-A **
19391182-A-C 17279302-A-C **
19414857-TA-T 17302977-TA-T **
19423762-T-C 17311882-T-C **
19448387-C-A 17336507-C-A **
18868948-T-A 16757068-T-A **
18856338-T-A 16744458-T-A **
19486896-G-T 17375016-G-T **
18382155-T-C 16270275-T-C P6_Gap **
18097791-T-C 15985911-T-C **
18100813-G-C 15988933-G-C **
18100823-C-G 15988943-C-G **
18190649-G-T 16078769-G-T **
18212511-G-T 16100631-G-T **
18226151-G-A 16114271-G-A **
18284600-A-C 16172720-A-C P6_Prx **
18317634-C-A 16205754-C-A P6_Prx **
18426060-C-A 16314180-C-A P6_Gap **
18853635-C-A 16741755-C-A **
18427754-C-T 16315874-C-T P6_Dst **
18565492-C-A 16453612-C-A **
18628346-C-A 16516466-C-A Y136868 **
18687693-T-G 16575813-T-G **
18695871-A-G 16583991-A-G **
18737669-A-G 16625789-A-G **
18750265-G-T 16638385-G-T **
18754835-G-T 16642955-G-T **
18819755-C-T 16707875-C-T **
19479938-A-G 17368058-A-G **
19544537-CT-C 17432657-CT-C **
22095703-C-A 19933817-C-A **
21863920-G-T 19702034-G-T **
21459919-T-G 19298033-T-G **
21459945-T-C 19298059-T-C **
21485797-G-A 19323911-G-A **
21486413-C-A 19324527-C-A **
21491045-C-A 19329159-C-A **
21549206-C-A 19387320-C-A **
21839965-TAA-T 19678079-TAA-T **
21852410-G-T 19690524-G-T **
21874755-C-A 19712869-C-A **
21368408-T-C 19206522-T-C **
21875975-A-G 19714089-A-G **
21905401-C-A 19743515-C-A **
21912357-A-T 19750471-A-T **
21939554-C-A 19777668-C-A **
21975417-G-A 19813531-G-A **
22011597-A-T 19849711-A-T **
22069465-C-A 19907579-C-A **
22069596-C-A 19907710-C-A **
22085802-C-T 19923916-C-T **
21416531-C-A 19254645-C-A **
21296490-C-A 19134604-C-A **
19563012-C-A 17451132-C-A **
21037329-T-C 18875443-T-C **
19690072-C-G 17578192-C-G P5_Prx **
19709343-A-T 17597463-A-T P5_Prx **
20756741-T-G 18594855-T-G P4_Prx **
20840970-C-A 18679084-C-A P4_Gap **
20865360-A-AGACT 18703474-A-AGACT P4_Dst **
20865379-C-T 18703493-C-T P4_Dst **
20865429-A-C 18703543-A-C P4_Dst **
21002569-T-C 18840683-T-C P4_Dst **
21037333-G-A 18875447-G-A **
21270405-C-A 19108519-C-A **
21049325-C-A 18887439-C-A **
21133938-T-C 18972052-T-C **
21135094-T-C 18973208-T-C **
21141098-C-T 18979212-C-T **
21177231-C-TT 19015345-C-TT **
21177373-C-A 19015487-C-A **
21189661-T-C 19027775-T-C **
21212410-C-A 19050524-C-A **
21262737-C-A 19100851-C-A **
18712404-C-A 16600524-C-A **
14152261-G-A 12031555-G-A **
13596446-C-A 11440770-C-A **
6028469-C-G 6160428-C-G **
5851872-C-A 5983831-C-A **
5926925-G-T 6058884-G-T **
5934765-C-A 6066724-C-A **
5934811-A-C 6066770-A-C **
5934837-C-G 6066796-C-G **
5934838-C-A 6066797-C-A **
5990528-C-A 6122487-C-A **
6008281-C-A 6140240-C-A **
6012955-A-G 6144914-A-G **
6120952-C-A 6252911-C-A **
5465608-T-G 5597567-T-G **
6352515-A-C 6484474-A-C **
6355696-T-C 6487655-T-C **
6395123-G-T 6527082-G-T **
6402496-A-C 6534455-A-C **
6543179-G-T 6675138-G-T **
6602724-G-T 6734683-G-T **
6634106-T-A 6766065-T-A **
6667447-A-C 6799406-A-C **
6771402-T-C 6903361-T-C **
5829903-T-C 5961862-T-C **
5459163-C-A 5591122-C-A **
6791189-C-A 6923148-C-A **
4443060-A-T 4575019-A-T **
3769331-C-A 3901290-C-A **
3833652-C-T 3965611-C-T 16×A**
3834805-A-G 3966764-A-G **
3834809-C-A 3966768-C-A **
3848746-C-A 3980705-C-A **
3849151-A-C 3981110-A-C **
3849387-T-G 3981346-T-G **
4070698-G-C 4202657-G-C **
4201304-C-A 4333263-C-A **
4527481-T-A 4659440-T-A **
5224128-G-A 5356087-G-A **
4700421-A-T 4832380-A-T **
4700450-C-G 4832409-C-G **
4778437-A-C 4910396-A-C **
4778476-T-A 4910435-T-A **
4778542-C-T 4910501-C-T **
4902194-C-T 5034153-C-T **
4957548-T-G 5089507-T-G **
5022144-G-T 5154103-G-T **
5212598-T-C 5344557-T-C **
6784334-A-T 6916293-A-T **
6835472-C-G 6967431-C-G **
3769125-T-A 3901084-T-A **
8119436-G-A 8251395-G-A **
7832370-C-A 7964329-C-A **
7918590-T-A 8050549-T-A **
7918646-T-G 8050605-T-G **
7935598-C-A 8067557-C-A **
7935602-A-C 8067561-A-C **
13594392-C-A 11438716-C-A **
7990777-T-A 8122736-T-A **
8073308-G-T 8205267-G-T **
8081913-C-A 8213872-C-A **
8142774-A-G 8274733-A-G **
7716453-C-A 7848412-C-A **
8156631-C-A 8288590-C-A **
8159749-C-A 8291708-C-A **
8166686-C-T 8298645-C-T **
8217927-T-C 8349886-T-C **
8281634-C-A 8413593-C-A **
8286896-T-A 8418855-T-A **
8556333-G-A 8688292-G-A **
8671373-G-A 8803332-G-A **
8705795-C-A 8837754-C-A **
7775746-T-C 7907705-T-C **
7689991-C-A 7821950-C-A **
6847123-C-A 6979082-C-A **
7100958-T-TC 7232917-T-TC **
6874536-A-T 7006495-A-T **
6911188-C-T 7043147-C-T **
6915992-G-T 7047951-G-T **
6922585-T-C 7054544-T-C **
6957671-A-G 7089630-A-G **
7044393-C-A 7176352-C-A **
7078533-G-T 7210492-G-T **
7083042-T-C 7215001-T-C **
7098600-T-C 7230559-T-C **
7123676-A-G 7255635-A-G **
7657049-G-A 7789008-G-A **
7165332-G-C 7297291-G-C **
7176083-C-T 7308042-C-T **
7269753-G-T 7401712-G-T **
7272916-C-A 7404875-C-A **
7418629-C-A 7550588-C-A **
7418649-G-C 7550608-G-C **
7420606-T-C 7552565-T-C **
7453548-G-T 7585507-G-T Y38208 IR1_L **
7577849-A-C 7709808-A-C **
3769136-T-G 3901095-T-G **
3769110-T-A 3901069-T-A **
8728284-C-A 8860243-C-A **
6948484-C-A 7080443-C-A **
17402180-AT-A 15290300-AT-A 9×T**
8742721-C-A 8874680-C-A **
17714722-C-A 15602842-C-A **
16826566-C-A 14714686-C-A **
2706757-G-A 2838716-G-A **
6957581-C-A 7089540-C-A **
7896908-C-A 8028867-C-A **
7053706-C-A 7185665-C-A **
15881843-T-C 13769963-T-C **
17470847-C-A 15358967-C-A **
11676230-C-A **
2706740-G-T 2838699-G-T **
11008034-C-A **
8970824-A-T 9133215-A-T **
19609573-A-C 17497693-A-C P5_Prx **
28724787-C-A 26578640-C-A **
11655220-C-A **
9986039-C-A 10148430-C-A **
8736433-C-A 8868392-C-A **
6350731-CAA-C 6482690-CAA-C 10×A**
28818219-A-C 26672072-A-C **
11037987-A-G **
7411557-C-A 7543516-C-A **
19161070-C-A 17049190-C-A **
6646025-T-C 6777984-T-C Z2698 FGC2435 **
22508720-T-C 20346834-T-C BY30051 DYZ19 **
22508725-A-T 20346839-A-T DYZ19 **
22508699-G-T 20346813-G-T DYZ19 **
7237948-C-A 7369907-C-A **
10667031-T-C **
6402508-G-A 6534467-G-A **
9503970-C-A 9666361-C-A **
10792717-T-C **
56756869-G-A **
10995716-C-A **
15648730-C-A 13536850-C-A **
14721780-C-A 12609848-C-A **
21112050-C-A 18950164-C-A **
10900692-A-T **
10808859-A-C **
10969031-A-G **
10969046-C-G **
19610283-C-A 17498403-C-A P5_Prx **
6177479-GTT-G 6309438-GTT-G IR3_Dst **
10655895-G-T **
13273935-C-A 11118259-C-A **
3759311-T-A 3891270-T-A **
3093055-A-G 3225014-A-G **
2740440-A-T 2872399-A-T **
2740468-C-G 2872427-C-G **
2774723-C-A 2906682-C-A **
2833272-T-C 2965231-T-C **
2860239-C-T 2992198-C-T **
2925890-C-A 3057849-C-A **
3048031-C-A 3179990-C-A **
3048056-T-C 3180015-T-C **
3072054-T-C 3204013-T-C **
3178166-A-G 3310125-A-G **
2689585-C-T 2821544-C-T **
3178296-A-T 3310255-A-T **
3252890-C-A 3384849-C-A **
3274328-T-C 3406287-T-C **
3286766-T-C 3418725-T-C **
3388629-C-A 3520588-C-A **
3436297-G-T 3568256-G-T **
3591535-C-T 3723494-C-T **
3686380-G-T 3818339-G-T **
3706333-T-G 3838292-T-G **
2689745-T-A 2821704-T-A **
2680324-G-T 2812283-G-T **
15894593-G-T 13782713-G-T **
14144039-G-T 12023333-G-T **
26188741-A-T 24042594-A-T P1_Y1 **
2773721-T-A 2905680-T-A **
4509407-C-A 4641366-C-A **
10655020-G-T **
16305809-C-T 14193929-C-T **
23421006-C-A 21259120-C-A **
3048054-C-A 3180013-C-A **
14774299-C-G 12662368-C-G **
22730349-C-A 20568463-C-A **
14776943-C-A 12665012-C-A **
2668971-A-G 2800930-A-G **
14776945-T-G 12665014-T-G **
14776948-C-T 12665017-C-T **
14152271-C-A 12031565-C-A **
14863062-T-C 12751128-T-C **
13624656-C-A 11468980-C-A **
18723037-C-A 16611157-C-A **
6755932-C-A 6887891-C-A **
11648639-C-A **
14107015-C-A 11986309-C-A **
8711335-C-G 8843294-C-G Y132123 **
7971960-T-C 8103919-T-C **
56850952-A-T **
10985046-C-A **
10808839-T-A **
10808845-A-T **
10808865-A-G **
10990257-C-T **
10989374-T-C **
10808884-G-C **
10808922-C-A **
10808957-C-G **
10990846-T-C **
10809358-C-G **
10981273-C-A **
10809395-C-T **
10831091-T-C **
10832410-C-T **
10832437-A-T **
10832442-A-C **
10832449-T-A **
10990770-T-C **
10808832-A-T **
10975862-T-A **
10782223-C-A **
10760953-C-A **
10935594-T-TCTAA **
10770524-A-C **
10776622-C-A **
10778583-C-A **
10995710-A-T **
10779293-C-A **
10995705-C-CTCCA **
10808830-C-T **
10995701-C-T **
10995679-T-A **
10792726-T-C **
10798034-C-A **
10806800-C-T **
10808805-C-T **
10808806-C-A **
10808827-T-G **
10832450-C-T **
10832621-A-C **
10749115-T-G **
10948378-TTACAA-T **
10860860-C-A **
10860895-A-C **
10866143-A-C **
10948390-C-G **
10870042-C-T **
10885263-T-G **
10892877-A-C **
10948358-T-A **
10956649-C-A **
10893046-A-G **
10948348-C-T **
10900697-C-T **
10948321-C-T **
10902309-A-C **
10907849-C-A **
10916349-C-T **
10944043-T-C **
10954594-T-A **
10959429-C-T **
10837577-A-G **
10847366-C-A **
10838000-C-A **
10842206-C-A **
10971299-C-A **
10969155-C-A **
10842290-A-G **
10968600-A-C **
10844682-A-C **
10850616-A-T **
10857873-C-G **
10960259-CTCCAT-C **
10850840-C-A **
10850962-T-C **
10856114-T-C **
10856119-T-C **
10856124-A-C **
10856129-TC-T **
10857844-A-G **
10995732-TTCAATCC-T **
10770515-T-TACCTA **
10748886-T-A **
13214018-T-G 11058342-T-G **
9169572-C-A 9331963-C-A **
9334119-T-A 9496510-T-A **
9421106-C-A 9583497-C-A **
13273936-C-A 11118260-C-A **
9456065-A-T 9618456-A-T **
13255164-A-T 11099488-A-T **
13217209-C-G 11061533-C-G **
9482184-A-C 9644575-A-C **
13294718-C-A 11139042-C-A **
9516765-TG-T 9679156-TG-T **
9538063-G-T 9700454-G-T IR3_Prx **
9697274-T-G 9859665-T-G IR3_Prx **
11037955-C-T **
11024938-C-T **
9765908-G-T 9928299-G-T **
10747103-C-A **
13273937-A-C 11118261-A-C **
13305197-G-T 11149521-G-T **
11016357-C-CTTTCA **
8914509-A-T 9046468-A-T **
8851904-G-C 8983863-G-C **
8865921-G-T 8997880-G-T **
8879596-C-A 9011555-C-A **
13491616-C-A 11335940-C-A **
13422399-A-T 11266723-A-T **
8914488-G-A 9046447-G-A **
8914499-A-G 9046458-A-G **
8914848-C-G 9046807-C-G **
9062212-G-T 9224603-G-T **
9117583-T-G **
13325958-G-T 11170282-G-T **
8970819-G-A 9133210-G-A **
13306298-C-A 11150622-C-A **
8981030-T-C 9143421-T-C **
8981040-C-A 9143431-C-A **
8988079-CT-C 9150470-CT-C **
9015357-C-A 9177748-C-A **
11016363-A-T **
11023196-C-T **
11016342-C-CATTCA **
11001979-A-G **
10665856-C-A **
10666668-T-G **
11016341-C-A **
10669424-C-T **
10673517-C-A **
10678796-A-G **
10683793-C-A **
10663757-AATTCCATTCC-A **
10685998-C-T **
10690665-C-T **
10691351-C-A **
10995743-CTGTTTGAA-C **
10744583-C-A **
10746508-C-T **
10665544-C-A **
10669129-G-T **
10661104-A-T **
9940217-C-A 10102608-C-A **
9859181-A-T 10021572-A-T **
11005862-G-T **
11005168-T-G **
9865211-G-T 10027602-G-T **
9927431-T-C 10089822-T-C **
10655216-T-A **
9928123-G-A 10090514-G-A **
10930631-C-A **
9945881-A-G 10108272-A-G **
10654253-C-A **
10070438-A-G 10232829-A-G **
10627978-T-G **
10629075-T-C **
28621222-C-T 26475075-C-T ***
14300255-C-A 12179549-C-A ***
6402493-G-A 6534452-G-A Z36464 ***
23803388-C-A 21641502-C-A ***
13575985-T-A 11420309-T-A ***
56828598-C-G ***
11655537-G-A ***
8498355-G-A 8630314-G-A ***
7254024-G-T 7385983-G-T ***
14667673-C-T 12555739-C-T ***
28479373-C-A 26333226-C-A ***
14289125-A-T 12168419-A-T ***
8751125-C-A 8883084-C-A ***
14345266-TA-T 12224561-TA-T 9×A***
17878118-C-A 15766238-C-A ***
14318253-C-A 12197547-C-A ***
10801717-C-G ***
10953551-C-A ***
17591494-GA-G 15479614-GA-G ***
23045760-T-A 20883874-T-A ***
16905147-C-A 14793267-C-A ***
20611368-T-C 18449482-T-C P5_Dst ***
20611360-G-T 18449474-G-T P5_Dst ***
19529077-C-A 17417197-C-A Y30016 ***
16519066-A-G 14407186-A-G ***
19004823-C-A 16892943-C-A ***
18996582-C-A 16884702-C-A ***
9837155-C-A 9999546-C-A ***
9832836-T-TA 9995227-T-TA 9×A***
7180186-C-A 7312145-C-A ***
7180194-T-C 7312153-T-C ***
7180202-T-C 7312161-T-C Y83524 ***
9807150-C-A 9969541-C-A ***
7289319-C-A 7421278-C-A ***
16850040-C-A 14738160-C-A ***
16957750-C-A 14845870-C-A ***
16261597-C-A 14149717-C-A ***
9461009-C-A 9623400-C-A ***
17018825-C-A 14906945-C-A ***
17136866-C-A 15024986-C-A ***
9077122-C-A 9239513-C-A ***
7975634-C-A 8107593-C-A ***
7975641-C-A 8107600-C-A ***
18124686-G-A 16012806-G-A S20670 ***
8156814-C-A 8288773-C-A ***
17551970-G-T 15440090-G-T ***
8576007-C-A 8707966-C-A ***
8649767-A-G 8781726-A-G ***
17716551-C-A 15604671-C-A ***
8888419-G-T 9020378-G-T ***
17663014-A-G 15551134-A-G ***
6064019-C-A 6195978-C-A ***
16077621-A-T 13965741-A-T ***
23011078-C-A 20849192-C-A ***
15489868-G-C 13377988-G-C ***
23002416-C-A 20840530-C-A ***
14994695-C-A 12882780-C-A ***
23277412-C-A 21115526-C-A ***
15057738-ATTT-A,AT 12945830-ATTT-A,AT 18×T***
15940520-CTT-C,CT 13828640-CTT-C,CT 12×T***
13940793-C-A 11820087-C-A A19096 ***
15143903-T-C 13031990-T-C ***
22665071-C-A 20503185-C-A ***
15181916-A-T 13070002-A-T ***
2702464-C-A 2834423-C-A ***
15223064-G-T 13111150-G-T ***
10859343-T-C ***
22346335-A-T 20184449-A-T DYZ19 ***
22287587-A-G 20125701-A-G DYZ19 ***
15498460-T-C 13386580-T-C ***
5459396-C-A 5591355-C-A ***
21443266-T-C 19281380-T-C ***
15928776-C-A 13816896-C-A ***
21285220-C-A 19123334-C-A ***
5204669-T-A 5336628-T-A ***
21297990-A-G 19136104-A-G ***
21308120-C-A 19146234-C-A ***
4960692-C-A 5092651-C-A ***
21625153-T-C 19463267-T-C ***
15589531-GTCTATCTGAAA-G 13477651-GTCTATCTGAAA-G ***
4582206-C-A 4714165-C-A ***
4124018-G-A 4255977-G-A ***
4107967-A-G 4239926-A-G ***
21939475-C-T 19777589-C-T ***
8819093-C-A 8951052-C-A ***
22095824-C-A 19933938-C-A ***
21985308-C-A 19823422-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 125139918136274908187413172
Used in age calculations918136274908187413172
Counts of SNPs2022
Variant counts last updated 2019-05-11 10:30:17.


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