unknown

BigY2: N160113

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > Y17161 > Y16889 > A7992 > ~19972403-C-T > BY32418 > BY32410

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N160113
18274596-G-A 16162716-G-A ~18274596-G-A P6_Prx A*
19908846-C-T 17796966-C-T P5_Prx A*
26459576-A-G 24313429-A-G P1_Y1 A*
28816608-G-T 26670461-G-T A*
20787642-G-A 18625756-G-A P4_Prx A*
20617893-A-G 18456007-A-G P4_Prx A*
13451231-C-T 11295555-C-T A*
24350959-T-C 22204812-T-C P3_t1 A*
25522285-G-C 23376138-G-C P1_gr1 A*
23237345-C-A 21075459-C-A Y131128 Y+
23207410-G-A 21045524-G-A Y131140 Y+
22489374-T-A 20327488-T-A BY225094 DYZ19 +
23070520-A-G 20908634-A-G Y131133 YY+
19149012-T-C 17037132-T-C Y131145 YY+
16581416-A-G 14469536-A-G Y131136 YY+
24493956-C-T 22347809-C-T Y131142 +
16650167-T-C 14538287-T-C Y131139 YY+
2713036-C-G 2844995-C-G Y131131 YY+
22553363-T-TA 20391477-T-TA 8×A+
17189548-G-C 15077668-G-C Y131125 YY+
22487096-T-A 20325210-T-A BY224891 DYZ19 +
16849080-G-T 14737200-G-T Y131123 YY+
22112638-C-A 19950752-C-A Y131130 YY+
6346793-G-T 6478752-G-T Y131124 +
7203305-G-A 7335264-G-A BY63860 YY+
18390280-T-C 16278400-T-C Y131127 P6_Gap +
7729960-G-A 7861919-G-A Y131138 YY+
7903062-T-G 8035021-T-G Y131137 YY+
7951670-T-C 8083629-T-C Y131134 YY+
9142783-G-A 9305174-G-A BY78468 Y+
8239471-G-C 8371430-G-C Y131141 YY+
19246517-C-T 17134637-C-T Y131132 YY+
8340051-G-T 8472010-G-T Y131129 YY+
23124173-C-A 20962287-C-A BY143153 YY+
23754039-T-C 21592153-T-C Y131143 Y+
8449875-A-C 8581834-A-C Y131146 YY+
28545461-G-A 26399314-G-A Y131122 +
13463326-C-T 11307650-C-T *
13452743-C-A 11297067-C-A *
13450411-CTCCATTCCATTCCATTCTATTCCATTCCAT-C,CTCCATTCCATTCCATTCCAT 11294735-CTCCATTCCATTCCATTCTATTCCATTCCAT-C,CTCCATTCCATTCCATTCCAT *
17703258-A-T 15591378-A-T **
17903377-G-T 15791497-G-T **
17898791-T-A 15786911-T-A **
17813492-A-C 15701612-A-C **
17789695-A-C 15677815-A-C **
17714906-C-A 15603026-C-A **
17703271-G-T 15591391-G-T **
17549220-A-G 15437340-A-G **
13708324-T-G 11552648-T-G **
13698597-C-T 11542921-C-T **
17501078-T-G 15389198-T-G **
17453120-T-A 15341240-T-A **
17210910-A-C 15099030-A-C **
13708336-G-A 11552660-G-A **
17165399-A-C 15053519-A-C **
16993354-C-A 14881474-C-A **
13708352-A-T 11552676-A-T **
16990298-G-T 14878418-G-T **
13708315-A-T 11552639-A-T **
18037887-A-G 15926007-A-G **
17940754-C-A 15828874-C-A **
18955825-A-T 16843945-A-T **
11033606-A-T **
11034427-C-A **
19052143-A-C 16940263-A-C **
13226879-C-A 11071203-C-A **
13262941-G-T 11107265-G-T **
18989763-C-A 16877883-C-A **
13287691-A-C 11132015-A-C **
13328783-C-A 11173107-C-A **
18926913-G-T 16815033-G-T **
17953828-C-A 15841948-C-A **
18901059-T-G 16789179-T-G **
18873389-G-T 16761509-G-T **
18873373-G-T 16761493-G-T **
18448952-G-T 16337072-G-T P6_Dst **
18422807-C-A 16310927-C-A P6_Gap **
18395794-G-T 16283914-G-T P6_Gap **
13550775-C-A 11395099-C-A **
18241934-T-A 16130054-T-A **
13708360-G-T 11552684-G-T **
16938507-G-T 14826627-G-T **
14358251-C-A 12237546-C-A **
14339238-A-T 12218533-A-T **
14933735-TCAGC-T 12821800-TCAGC-T **
15685166-AC-A 13573286-AC-A **
15685162-AAC-A 13573282-AAC-A **
13975863-C-A 11855157-C-A **
15650735-C-A 13538855-C-A **
15630860-G-T 13518980-G-T **
15629762-T-A 13517882-T-A **
15420172-C-A 13308292-C-A **
15189414-G-T 13077500-G-T **
14759250-C-A 12647319-C-A **
15984479-C-G 13872599-C-G **
14757393-GC-G 12645462-GC-G **
14743629-A-G 12631698-A-G FT231449 **
14720348-G-T 12608416-G-T **
14682265-C-A 12570331-C-A **
14525713-T-A 12413914-T-A **
12377270-C-A **
14284693-A-C 12163987-A-C **
14463425-C-A 12342698-C-A **
14302140-TG-T 12181434-TG-T **
15984473-C-A 13872593-C-A **
13958838-C-A 11838132-C-A **
16710146-G-A 14598266-G-A **
16322100-G-T 14210220-G-T **
16706049-C-A 14594169-C-A **
16679374-C-G 14567494-C-G **
11663092-C-A **
16679366-A-C 14567486-A-C **
11667758-G-T **
11674454-G-T **
16612652-AAG-A 14500772-AAG-A **
13901089-G-T 11780383-G-T **
16379144-T-A 14267264-T-A **
13919156-C-A 11798450-C-A **
13953941-G-T 11833235-G-T **
16176868-C-A 14064988-C-A **
13919162-T-A 11798456-T-A **
13932891-C-A 11812185-C-A **
16164442-CAAA-C 14052562-CAAA-C P8_Dst **
13935614-C-A 11814908-C-A **
16164434-CAA-C 14052554-CAA-C P8_Dst **
16047913-C-A 13936033-C-A **
16037335-A-C 13925455-A-C **
15984484-C-A 13872604-C-A **
16777745-G-T 14665865-G-T **
22767315-C-A 20605429-C-A **
19228786-C-T 17116906-C-T Y104078 **
26167301-A-T 24021154-A-T P1_Y1 **
27546871-A-C 25400724-A-C P1_Y2 **
26928362-A-T 24782215-A-T P1_r3 **
26928343-C-A 24782196-C-A P1_r3 **
26928323-G-T 24782176-G-T P1_r3 **
26928315-G-T 24782168-G-T P1_r3 **
26928301-A-T 24782154-A-T P1_r3 **
26244727-CT-C 24098580-CT-C P1_Y1 **
26220687-C-A 24074540-C-A P1_Y1 **
26220648-T-A 24074501-T-A P1_Y1 **
26167247-A-T 24021100-A-T P1_Y1 **
27847946-G-T 25701799-G-T P1_Y2 **
26167237-A-T 24021090-A-T P1_Y1 **
26120273-C-A 23974126-C-A P1_Y1 **
26120270-T-A 23974123-T-A P1_Y1 **
26120266-T-A 23974119-T-A P1_Y1 **
26120262-T-A 23974115-T-A P1_Y1 **
25675246-T-A 23529099-T-A P1_b3 **
25675224-T-A 23529077-T-A P1_b3 **
25675216-T-A 23529069-T-A P1_b3 **
25675193-T-A 23529046-T-A P1_b3 **
24611988-T-A 22465841-T-A P3_t2 **
27714413-C-A 25568266-C-A P1_Y2 **
27861941-AT-A 25715794-AT-A P1_Y2 **
24607234-GT-G 22461087-GT-G P3_t2 **
28759729-T-A 26613582-T-A **
56867853-G-T **
56857689-T-A **
56840171-A-T **
56840146-A-T **
56771162-T-A **
28818156-G-C 26672009-G-C **
28811865-G-T 26665718-G-T **
28804442-T-A 26658295-T-A **
28802661-A-C 26656514-A-C **
28762163-T-C 26616016-T-C **
28720891-C-A 26574744-C-A **
28475994-C-A 26329847-C-A **
28688252-T-A 26542105-T-A **
28595996-G-T 26449849-G-T **
28592668-C-G 26446521-C-G **
28556245-C-T 26410098-C-T FT2343 **
28554614-A-G 26408467-A-G **
28546745-G-T 26400598-G-T **
28521729-G-A 26375582-G-A **
28517282-A-T 26371135-A-T **
28485804-T-C 26339657-T-C **
28484766-C-A 26338619-C-A FT164469 **
24611972-G-T 22465825-G-T P3_t2 **
24518129-C-A 22371982-C-A **
19522056-C-A 17410176-C-A **
19986013-G-T 17874133-G-T P5_Prx **
20886672-G-T 18724786-G-T P4_Dst **
20792258-A-T 18630372-A-T P4_Prx **
20792256-C-G 18630370-C-G P4_Prx **
20792248-A-T 18630362-A-T P4_Prx **
20792236-A-T 18630350-A-T P4_Prx **
20792228-G-T 18630342-G-T P4_Prx **
20570270-C-A 18408384-C-A P5_Dst **
20242456-T-G 18080570-T-G P5_Dst **
20050979-T-C 17939099-T-C P5_Prx **
19892860-C-A 17780980-C-A P5_Prx **
21152302-C-T 18990416-C-T **
19853587-T-A 17741707-T-A P5_Prx **
19853557-T-A 17741677-T-A P5_Prx **
19788379-A-T 17676499-A-T P5_Prx **
19781185-T-A 17669305-T-A P5_Prx **
11014858-C-A **
19706228-C-A 17594348-C-A P5_Prx **
19706199-T-A 17594319-T-A P5_Prx **
19644091-A-T 17532211-A-T P5_Prx **
19558416-C-A 17446536-C-A **
19522089-C-A 17410209-C-A **
21119757-T-C 18957871-T-C **
21268095-A-C 19106209-A-C **
24302367-G-GGTCT 22156220-G-GGTCT P3_t1 **
22536421-T-C 20374535-T-C **
24301121-A-T 22154974-A-T P3_t1 **
24301096-G-T 22154949-G-T P3_t1 **
24127507-T-A 21981360-T-A P3_b1 **
23341928-A-C 21180042-A-C **
23199887-C-A 21038001-C-A **
22965700-A-T 20803814-A-T **
22951222-T-A 20789336-T-A **
22804094-T-A 20642208-T-A **
22804090-G-C 20642204-G-C **
22662289-G-GTT 20500403-G-GTT 13×T**
22260446-T-G 20098560-T-G DYZ19 **
21498702-C-A 19336816-C-A **
22260430-A-T 20098544-A-T DYZ19 **
22260419-A-T 20098533-A-T DYZ19 **
22260404-A-G 20098518-A-G DYZ19 **
22260398-G-T 20098512-G-T DYZ19 **
22249910-G-T 20088024-G-T DYZ19 **
22170870-G-T 20008984-G-T **
21966547-G-T 19804661-G-T **
21966543-G-T 19804657-G-T **
21863087-C-A 19701201-C-A **
21850008-G-T 19688122-G-T **
19706257-C-A 17594377-C-A P5_Prx **
11018651-G-A **
11013919-A-G **
5911526-C-A 6043485-C-A **
6248051-C-A 6380010-C-A IR3_Dst **
6225893-C-A 6357852-C-A IR3_Dst **
6225872-T-G 6357831-T-G IR3_Dst **
6205719-T-A 6337678-T-A IR3_Dst **
6205715-T-A 6337674-T-A IR3_Dst **
6205705-T-A 6337664-T-A IR3_Dst **
6205692-G-T 6337651-G-T IR3_Dst **
6028489-A-C 6160448-A-C **
6019271-T-A 6151230-T-A **
5941010-G-T 6072969-G-T **
5924713-GA-G 6056672-GA-G 10×A**
5759513-T-C 5891472-T-C **
6303554-T-G 6435513-T-G IR3_Dst **
5673252-T-C 5805211-T-C **
5644396-A-C 5776355-A-C **
5607522-T-G 5739481-T-G **
5560619-T-C 5692578-T-C **
5230849-C-A 5362808-C-A **
5194745-G-T 5326704-G-T **
5068546-G-T 5200505-G-T **
4950650-T-A 5082609-T-A **
4928742-T-A 5060701-T-A **
4898572-T-A 5030531-T-A **
4537853-A-C 4669812-A-C **
6303548-A-C 6435507-A-C IR3_Dst **
6310880-C-A 6442839-C-A IR3_Dst **
4462201-G-T 4594160-G-T **
7211214-T-A 7343173-T-A **
8008137-G-A 8140096-G-A **
7964843-A-T 8096802-A-T **
11013879-A-C **
7721435-T-A 7853394-T-A **
7502300-G-A 7634259-G-A IR1_L **
7380988-G-T 7512947-G-T **
7335708-C-A 7467667-C-A **
7277061-C-A 7409020-C-A **
7275030-G-T 7406989-G-T **
7228532-A-G 7360491-A-G **
7221584-C-A 7353543-C-A **
7164122-G-T 7296081-G-T **
6310935-C-A 6442894-C-A IR3_Dst **
7158036-A-C 7289995-A-C **
7053851-A-C 7185810-A-C **
7043995-G-T 7175954-G-T **
6917838-C-A 7049797-C-A **
6822452-T-G 6954411-T-G **
6770837-A-G 6902796-A-G **
6732521-C-T 6864480-C-T **
6651684-A-T 6783643-A-T **
6646823-A-C 6778782-A-C **
6479149-T-G 6611108-T-G **
6429584-T-G 6561543-T-G **
6356265-A-G 6488224-A-G **
4472410-A-C 4604369-A-C **
4366913-A-T 4498872-A-T **
8290789-A-T 8422748-A-T **
26314717-C-A 24168570-C-A P1_Y1 **
6310940-G-C 6442899-G-C IR3_Dst **
10996645-C-T **
10996635-C-T **
22198810-G-T 20036924-G-T **
6310912-G-C 6442871-G-C IR3_Dst **
11674678-C-A **
18395789-G-T 16283909-G-T P6_Gap **
21565812-A-T 19403926-A-T **
13287688-T-G 11132012-T-G **
10781833-G-T **
13708348-A-T 11552672-A-T **
10988003-C-A **
13935621-C-A 11814915-C-A **
17498988-A-C 15387108-A-C **
23355472-C-A 21193586-C-A **
10877859-A-G **
7294575-C-A 7426534-C-A **
13460420-G-A 11304744-G-A **
5303373-G-T 5435332-G-T **
13491087-C-A 11335411-C-A **
18274908-A-G 16163028-A-G P6_Prx **
18636718-C-A 16524838-C-A **
9740277-G-C 9902668-G-C IR3_Prx **
22260407-G-T 20098521-G-T DYZ19 **
14270051-C-A 12149345-C-A **
28653846-C-A 26507699-C-A Y113249 **
4337035-G-T 4468994-G-T FT172903 **
3622653-G-T 3754612-G-T **
4303667-T-C 4435626-T-C **
4261947-A-G 4393906-A-G **
4256857-C-A 4388816-C-A **
4228164-T-G 4360123-T-G **
4165682-A-C 4297641-A-C **
4087900-T-A 4219859-T-A **
3995142-G-C 4127101-G-C **
3986975-C-A 4118934-C-A **
3835000-C-A 3966959-C-A **
3627816-C-G 3759775-C-G **
3627754-A-C 3759713-A-C **
3491500-G-T 3623459-G-T **
10801638-A-G **
3443705-G-T 3575664-G-T **
3439967-G-T 3571926-G-T **
3409765-T-A 3541724-T-A **
3302631-C-A 3434590-C-A **
3164731-G-T 3296690-G-T **
3100061-C-G 3232020-C-G **
2856726-G-T 2988685-G-T **
2817112-A-T 2949071-A-T **
2774918-T-C 2906877-T-C **
14219446-C-A 12098740-C-A **
19706189-T-A 17594309-T-A P5_Prx **
11030572-C-A **
8278585-G-T 8410544-G-T **
7832261-T-A 7964220-T-A **
8658324-C-A 8790283-C-A **
10857635-G-T **
10932507-T-A **
10932476-A-T **
10931396-C-A **
10920904-A-G **
10881087-C-A **
10878631-C-A **
10866041-C-A **
10866011-T-TCTCTG **
10863994-C-A **
10860638-C-A **
10844722-C-T **
10941641-C-A **
10843814-TTTCCATTCCATTCTC-T **
10842326-C-A **
10839649-CTCCAT-C **
10836884-T-G **
10836872-G-T **
10828154-T-A **
8741631-G-A 8873590-G-A **
10822842-A-C **
10801937-A-T **
10797812-C-A **
10941616-C-A **
10949538-C-CAA **
10791965-C-A **
10996612-C-T **
11002082-C-A **
10998760-T-A **
10996693-C-A **
10996689-G-A **
10996665-A-T **
10996655-A-T **
10996653-T-G **
10996629-A-T **
10996628-A-C **
10996623-G-C **
10996605-C-CACTAG **
10949540-C-CCAG **
10996592-C-G **
10996577-C-A **
10993324-T-G **
10988181-A-T **
10988173-G-C **
10984760-G-A **
10968556-T-G **
10965014-T-G **
10963594-G-T **
10956715-AT-A **
10951052-A-C **
10795840-CCAT-C **
10826568-GCATTC-G **
10789861-C-A **
9925311-A-T 10087702-A-T **
10690330-C-A **
10690316-C-G **
10669391-T-A **
10666400-C-A **
10660598-C-A **
10660439-A-T **
10654757-C-A **
10630618-C-T **
10628533-A-T **
9936298-A-C 10098689-A-C **
9932690-A-G 10095081-A-G **
9553989-T-A 9716380-T-A IR3_Prx **
10690353-T-A **
9553988-C-A 9716379-C-A IR3_Prx **
9553954-G-T 9716345-G-T IR3_Prx **
9553936-T-A 9716327-T-A IR3_Prx **
9553931-G-T 9716322-G-T IR3_Prx **
9553925-G-A 9716316-G-A IR3_Prx **
9551441-T-TTC 9713832-T-TTC IR3_Prx **
9531233-T-TGG 9693624-T-TGG IR3_Prx **
9531170-T-G 9693561-T-G IR3_Prx **
9240755-T-A 9403146-T-A **
9240736-T-A 9403127-T-A **
8822658-C-A 8954617-C-A **
10690339-C-A **
10690324-A-C **
10690355-A-G **
10744667-T-C **
10778027-C-A **
10770005-C-A **
10769878-T-G **
10769873-T-G **
10767788-C-A **
10762047-A-T **
10749905-C-A **
10748707-C-A **
10748118-A-C **
10754752-T-A **
10690422-C-T **
10690373-CAGTTA-C **
10690361-G-C **
10690371-T-C **
56873842-C-T **
14826548-GT-G,GTT 12714615-GT-G,GTT 19×T***
16354855-A-G 14242975-A-G ***
14301888-A-G 12181182-A-G ***
22857846-A-G 20695960-A-G ***
2708680-G-C 2840639-G-C ***
15928807-C-A 13816927-C-A ***
56832529-CTCCAGTCCAC-C,CTCCACTCCAA ***
56830068-C-CATTCC,CATTCT ***
23831252-CTTTTTTTTT-C 21669366-CTTTTTTTTT-C 26×T***
10679205-C-A ***
24407163-G-T 22261016-G-T ***
16035738-C-A 13923858-C-A ***
10653743-C-A ***
22508983-C-T 20347097-C-T DYZ19 ***
13457716-G-T 11302040-G-T 12×ATTCC***
16729350-C-A 14617470-C-A ***
15279272-C-A 13167371-C-A ***
18186491-G-T 16074611-G-T ***
15258359-C-A 13146443-C-A ***
10995852-TTC-T ***
19127858-CA-C,CAA 17015978-CA-C,CAA 17×A***
10931674-C-A ***
15076180-CT-C,CTTT 12964270-CT-C,CTTT 16×T***
10801682-C-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N160113987543280029777871417
Used in age calculations987543280029777871417
Counts of SNPs1919
Variant counts last updated 2020-03-15 02:45:08.


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