Branchi

BigY2: B50546
MDKA Birth: Italy

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Z56 > BY3548 > Y131941

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B50546
6214857-C-T 6346816-C-T IR3_Dst A*
6246815-A-T 6378774-A-T IR3_Dst A*
13687033-G-C 11531357-G-C A*
19632207-A-G 17520327-A-G P5_Prx A*
24299747-A-G 22153600-A-G P3_t1 A*
13806920-C-T 11686214-C-T Y65506 +
2721442-T-A 2853401-T-A Y131944 YY+
6778751-G-C 6910710-G-C Y131938 YY+
7153317-T-C 7285276-T-C BY63560 YY+
7841115-C-T 7973074-C-T Y131919 YY+
8482295-G-T 8614254-G-T Y131947 YY+
8714067-G-A 8846026-G-A Y131903 YY+
9447806-C-T 9610197-C-T Y131914 YY+
13230999-G-T 11075323-G-T BY84744 +
13693060-G-A 11537384-G-A BY88748 +
14222873-A-G 12102167-A-G Y131934 YY+
14438516-GA-G 12317789-GA-G +
14638259-AT-A 12526328-AT-A +
14783553-G-A 12671623-G-A Y131925 YY+
14804504-C-A 12692575-C-A BY97671 YY+
14868876-T-C 12756946-T-C Y131940 YY+
14921039-T-C 12809104-T-C Y131949 YY+
15206576-A-C 13094662-A-C Y131945 YY+
16305228-G-A 14193348-G-A Y131915 YY+
17112260-A-G 15000380-A-G BY112381 YY+
17201208-G-A 15089328-G-A Y131942 YY+
19222271-T-C 17110391-T-C Y131943 YY+
19422173-C-T 17310293-C-T Y131904 YY+
19512821-G-A 17400941-G-A Y131924 YY+
21493780-A-T 19331894-A-T Y131902 YY+
22256268-C-A 20094382-C-A BY214364 DYZ19 +
22256269-C-A 20094383-C-A BY214365 DYZ19 +
22422469-C-T 20260583-C-T BY217854 DYZ19 +
22863907-C-T 20702021-C-T Y131922 YY+
23041476-T-C 20879590-T-C Y131950 YY+
23160123-T-C 20998237-T-C Y131933 Y+
23758410-T-G 21596524-T-G BY147467 Y+
23987027-GAA-G 21840880-GAA-G 10×A+
28786874-G-A 26640727-G-A Y113483 +
14755-G-A +
28253534-T-A 26107387-T-A P1_b4 **
23341375-C-T 21179489-C-T FGC77229 **
23773940-G-A 21612054-G-A Y131916 **
19127703-C-A 17015823-C-A **
11665260-GA-G **
6454135-C-A 6586094-C-A **
17211531-C-A 15099651-C-A **
10992292-T-A **
16980155-C-A 14868275-C-A **
13271793-C-A 11116117-C-A **
15532564-C-A 13420684-C-A **
22209102-T-C 20047216-T-C **
10895825-C-A **
16701831-G-T 14589951-G-T **
10792758-C-A **
13898853-G-T 11778147-G-T **
6454485-C-A 6586444-C-A **
10792754-A-C **
10792766-T-G **
10849636-A-G **
28653818-C-A 26507671-C-A **
20101768-C-A 17989888-C-A P5_Dst **
11654005-T-A **
8736887-C-A 8868846-C-A **
26563864-C-A 24417717-C-A P1_g2 **
23465866-G-T 21303980-G-T **
7111121-C-A 7243080-C-A **
10895873-T-TTAAAC **
18779146-C-A 16667266-C-A **
2665603-A-T 2797562-A-T **
2684700-C-A 2816659-C-A **
2759977-C-A 2891936-C-A **
2970892-C-A 3102851-C-A **
3016334-T-C 3148293-T-C **
3033387-C-G 3165346-C-G **
3051365-A-T 3183324-A-T **
3225975-C-A 3357934-C-A **
3252522-T-C 3384481-T-C **
3343284-A-C 3475243-A-C **
3467187-C-A 3599146-C-A **
3479891-G-T 3611850-G-T **
3567424-A-C 3699383-A-C **
3731999-G-T 3863958-G-T **
3849160-C-A 3981119-C-A **
3914454-A-T 4046413-A-T **
3914468-T-G 4046427-T-G **
3950829-T-A 4082788-T-A **
3965750-C-A 4097709-C-A **
4094516-G-T 4226475-G-T **
4215360-C-A 4347319-C-A **
4244622-ATTTTTTT-A 4376581-ATTTTTTT-A 16×T**
4293037-C-A 4424996-C-A **
4302439-C-A 4434398-C-A **
4357406-C-A 4489365-C-A **
4444193-C-G 4576152-C-G **
4444218-A-C 4576177-A-C **
4509311-A-T 4641270-A-T **
4539977-A-C 4671936-A-C **
4560271-C-A 4692230-C-A **
4665839-A-T 4797798-A-T **
4874311-T-A 5006270-T-A **
4961494-G-T 5093453-G-T **
5190830-T-A 5322789-T-A **
5191228-CTTTTTT-C 5323187-CTTTTTT-C 27×T**
5214475-T-A 5346434-T-A **
5216458-A-T 5348417-A-T **
5228454-G-T 5360413-G-T **
5292343-T-A 5424302-T-A **
5458588-G-T 5590547-G-T **
5534781-C-A 5666740-C-A **
5592320-G-T 5724279-G-T **
5668994-T-A 5800953-T-A **
5776619-A-C 5908578-A-C **
5858494-C-A 5990453-C-A **
5895146-T-A 6027105-T-A **
5905477-A-T 6037436-A-T **
5957557-G-T 6089516-G-T **
5990356-C-A 6122315-C-A **
5999419-C-A 6131378-C-A **
6025304-T-C 6157263-T-C **
6040322-A-T 6172281-A-T **
6305279-T-G 6437238-T-G IR3_Dst **
6305284-T-G 6437243-T-G IR3_Dst **
6328800-C-A 6460759-C-A IR3_Dst **
6359186-T-C 6491145-T-C **
6375524-G-A 6507483-G-A **
6375536-G-A 6507495-G-A **
6375547-G-C 6507506-G-C **
6375551-C-A 6507510-C-A **
6375560-G-A 6507519-G-A **
6536265-A-G 6668224-A-G **
6580671-C-A 6712630-C-A **
6795290-A-T 6927249-A-T **
6882394-T-G 7014353-T-G **
6882414-A-T 7014373-A-T **
6891998-T-G 7023957-T-G **
6901835-A-G 7033794-A-G **
6903693-C-A 7035652-C-A **
7011592-C-G 7143551-C-G FTA29992 **
7110658-C-A 7242617-C-A **
7111818-T-A 7243777-T-A **
7167010-T-A 7298969-T-A **
7167053-C-A 7299012-C-A **
7229117-C-A 7361076-C-A **
7231523-C-A 7363482-C-A **
7237208-C-A 7369167-C-A **
7285708-A-T 7417667-A-T **
7301573-T-A 7433532-T-A **
7437397-A-G 7569356-A-G **
7613828-CATCAGA-C 7745787-CATCAGA-C **
7615307-G-T 7747266-G-T FTA30188 **
7990742-G-T 8122701-G-T **
7991320-T-A 8123279-T-A **
8288883-T-A 8420842-T-A **
8350215-C-A 8482174-C-A **
8351756-A-G 8483715-A-G **
8389746-T-A 8521705-T-A **
8398989-G-T 8530948-G-T **
8736817-C-A 8868776-C-A **
8852031-G-T 8983990-G-T **
9123284-T-A **
9019041-T-A 9181432-T-A **
9046994-G-T 9209385-G-T **
9416833-T-A 9579224-T-A **
9440432-T-A 9602823-T-A **
9482323-C-A 9644714-C-A **
9498716-C-A 9661107-C-A **
9936417-C-A 10098808-C-A **
9977491-A-T 10139882-A-T **
9977492-T-A 10139883-T-A **
10004805-C-A 10167196-C-A **
10023843-C-A 10186234-C-A **
10024282-C-A 10186673-C-A **
10067119-G-T 10229510-G-T **
10653207-G-C **
10654193-C-G **
10656195-C-A **
10668219-T-A **
10683661-A-ACACCC **
10685502-T-C **
10685513-A-G **
10685517-A-T **
10685527-C-T FT91560 **
10685536-C-A **
10685548-G-C **
10686661-C-A **
10693800-T-C **
10746058-C-A **
10759902-T-C **
10759910-C-T **
10772497-A-C **
10776041-A-C **
10804790-C-CTTTGTA **
10804792-T-TCGAGTTGAA **
10804799-C-G **
10804804-C-T **
10822046-C-A **
10837782-A-G **
10841386-G-T **
10849694-A-C **
10866084-C-CT **
10873130-T-G **
10884012-TATTCC-T **
10884066-C-A **
10893982-A-T **
10895852-A-G **
10918471-C-A **
10918550-G-T **
10928197-C-A **
10932343-C-A **
10947140-C-A **
10965322-T-C **
10974773-C-G **
10974776-T-A **
10974820-C-A **
10974825-C-A **
10994072-C-A **
10995184-C-A **
11012267-C-A **
11014511-C-T **
11018200-C-T FT393826 **
11018212-C-A **
11030409-C-A **
11033858-T-A **
11033866-C-CACTCA **
13198662-C-A 11042986-C-A **
13213466-C-T 11057790-C-T **
13213978-G-T 11058302-G-T **
13228221-C-A 11072545-C-A **
13234986-C-A 11079310-C-A **
13245414-C-A 11089738-C-A **
13255498-C-T 11099822-C-T **
13255499-C-G 11099823-C-G **
13255510-A-T 11099834-A-T **
13255600-C-A 11099924-C-A **
13273891-T-A 11118215-T-A **
13298546-G-A 11142870-G-A **
13446008-C-T 11290332-C-T **
13454635-T-C 11298959-T-C **
13461056-C-G 11305380-C-G **
13526015-G-T 11370339-G-T **
13571090-T-G 11415414-T-G **
13586051-T-G 11430375-T-G **
13586089-A-T 11430413-A-T **
13588282-A-G 11432606-A-G **
13592513-C-A 11436837-C-A FT446069 **
13592547-C-A 11436871-C-A **
13597123-C-A 11441447-C-A **
13627295-G-T 11471619-G-T **
13642221-A-T 11486545-A-T **
13644242-C-A 11488566-C-A **
13696687-T-G 11541011-T-G **
13696708-G-A 11541032-G-A **
13696716-A-C 11541040-A-C **
13696723-G-C 11541047-G-C **
13708155-T-A 11552479-T-A **
13708157-T-A 11552481-T-A **
13708166-G-T 11552490-G-T **
13708170-T-A 11552494-T-A **
13708176-T-A 11552500-T-A **
13708181-G-T 11552505-G-T **
13708182-G-C 11552506-G-C **
13710158-C-A 11554482-C-A **
13720484-G-T 11564808-G-T **
13728768-C-A 11573092-C-A **
13728790-G-T 11573114-G-T **
13728792-C-A 11573116-C-A **
13728803-T-A 11573127-T-A **
13728809-G-T 11573133-G-T **
11643743-G-GGTACAGAATA **
11643788-G-C **
11646012-G-T **
11656433-G-T **
11667337-A-C **
11667646-A-T **
13874709-T-G 11754003-T-G **
13880208-A-C 11759502-A-C **
13880255-T-G 11759549-T-G **
13880768-C-A 11760062-C-A **
13989022-C-G 11868316-C-G **
14000116-A-G 11879410-A-G **
14007573-C-A 11886867-C-A **
14007656-T-A 11886950-T-A **
14008776-A-C 11888070-A-C **
14032094-A-C 11911388-A-C **
14099854-T-A 11979148-T-A **
14114479-G-T 11993773-G-T **
14146752-T-A 12026046-T-A **
14180795-A-T 12060089-A-T **
14187326-C-A 12066620-C-A **
14213218-G-T 12092512-G-T **
14213574-A-C 12092868-A-C **
14220946-A-C 12100240-A-C **
14352830-A-G 12232125-A-G **
14356292-C-A 12235587-C-A **
14358337-C-A 12237632-C-A **
14451074-CT-C 12330347-CT-C **
14474676-A-C 12353945-A-C **
14483225-C-A 12362494-C-A **
14502482-C-A 12390687-C-A **
14507729-A-T 12395934-A-T **
14526568-G-A 12414769-G-A **
14532716-G-T 12420917-G-T **
14539443-A-C 12427644-A-C FT380606 **
14554663-G-C 12442864-G-C **
14562324-T-A 12450524-T-A **
14563177-G-T 12451377-G-T **
14609623-T-C 12497825-T-C **
14609643-A-C 12497845-A-C **
14609645-T-A 12497847-T-A **
14609645-TG-T 12497847-TG-T **
14609650-G-T 12497852-G-T **
14609679-G-C 12497881-G-C **
14609702-A-G 12497904-A-G **
14609708-G-C 12497910-G-C **
14609724-C-T 12497926-C-T **
14792764-C-A 12680835-C-A **
14798593-C-A 12686664-C-A **
14992690-A-C 12880775-A-C **
15011554-A-C 12899642-A-C **
15156989-A-T 13045076-A-T **
15157667-A-T 13045754-A-T **
15421340-A-T 13309460-A-T FTA31230 **
15452467-C-A 13340587-C-A **
15532527-A-T 13420647-A-T **
15532540-C-A 13420660-C-A **
15576910-G-A 13465030-G-A **
15616715-C-A 13504835-C-A **
15746477-C-A 13634597-C-A **
15832235-T-C 13720355-T-C **
15888525-A-G 13776645-A-G **
15916333-A-T 13804453-A-T **
15987998-C-T 13876118-C-T **
16034305-C-A 13922425-C-A **
16037236-C-A 13925356-C-A **
16037300-CA-C 13925420-CA-C **
16054962-C-A 13943082-C-A **
16056070-G-A 13944190-G-A **
16063201-T-G 13951321-T-G **
16063213-T-G 13951333-T-G **
16429746-G-T 14317866-G-T **
16624073-T-G 14512193-T-G **
16688210-A-T 14576330-A-T **
16710307-G-A 14598427-G-A **
16777670-C-A 14665790-C-A **
16828970-A-C 14717090-A-C **
16830957-C-A 14719077-C-A **
16941737-C-A 14829857-C-A **
16998600-C-A 14886720-C-A **
17014426-C-A 14902546-C-A **
17030740-C-A 14918860-C-A **
17244365-A-T 15132485-A-T **
17324321-G-T 15212441-G-T **
17343749-C-A 15231869-C-A **
17343872-C-A 15231992-C-A **
17363177-C-A 15251297-C-A **
17433934-C-A 15322054-C-A **
17433949-C-A 15322069-C-A **
17446766-C-A 15334886-C-A **
17486309-C-A 15374429-C-A FTB23056 **
17490266-C-A 15378386-C-A **
17549380-T-G 15437500-T-G **
17591875-T-A 15479995-T-A **
17636296-C-A 15524416-C-A **
17648338-T-A 15536458-T-A **
17648575-C-A 15536695-C-A **
17802222-A-C 15690342-A-C **
18089053-A-T 15977173-A-T **
18090157-C-A 15978277-C-A **
18143872-A-G 16031992-A-G **
18151764-T-C 16039884-T-C **
18151892-G-T 16040012-G-T **
18154701-C-A 16042821-C-A Y131946 **
18185376-C-A 16073496-C-A **
18189438-G-T 16077558-G-T **
18288579-C-A 16176699-C-A FT79684 P6_Prx **
18422805-G-C 16310925-G-C P6_Gap **
18635267-A-T 16523387-A-T **
18646008-C-A 16534128-C-A **
18847346-T-A 16735466-T-A **
18867339-CTTTTTTTTT-C 16755459-CTTTTTTTTT-C 24×T**
18904945-T-A 16793065-T-A **
18948221-C-A 16836341-C-A **
18989254-G-T 16877374-G-T **
18989264-A-C 16877384-A-C **
19081311-C-A 16969431-C-A **
19088252-T-A 16976372-T-A **
19122130-G-C 17010250-G-C **
19324158-C-A 17212278-C-A **
19464091-G-T 17352211-G-T **
19510279-T-TA 17398399-T-TA **
19524609-C-T 17412729-C-T **
19529279-A-C 17417399-A-C **
19529284-T-G 17417404-T-G **
19612065-A-T 17500185-A-T P5_Prx **
19612112-C-A 17500232-C-A P5_Prx **
19924691-G-T 17812811-G-T P5_Prx **
19924703-G-T 17812823-G-T P5_Prx **
19950520-A-T 17838640-A-T P5_Prx **
20033672-A-AC 17921792-A-AC P5_Prx **
20235173-G-C 18073287-G-C P5_Dst **
20235179-T-A 18073293-T-A P5_Dst **
20404527-G-T 18242641-G-T P5_Dst **
20500655-G-T 18338769-G-T P5_Dst **
20500662-A-T 18338776-A-T P5_Dst **
20500664-C-G 18338778-C-G P5_Dst **
20500671-A-T 18338785-A-T P5_Dst **
20500681-G-C 18338795-G-C P5_Dst **
20614937-C-A 18453051-C-A P4_Prx **
21139518-C-A 18977632-C-A **
21221000-T-G 19059114-T-G **
21315129-C-A 19153243-C-A **
21382659-A-C 19220773-A-C **
21464934-G-C 19303048-G-C FT452959 **
21476018-G-T 19314132-G-T **
21477099-C-G 19315213-C-G **
21604130-C-A 19442244-C-A **
21700441-T-G 19538555-T-G **
21714706-G-A 19552820-G-A **
21824547-A-C 19662661-A-C **
21824585-A-T 19662699-A-T **
21969680-T-C 19807794-T-C Y131905 **
21983961-C-A 19822075-C-A **
22113746-T-G 19951860-T-G **
22133002-C-A 19971116-C-A **
22171584-G-T 20009698-G-T **
22215174-G-T 20053288-G-T **
22276950-A-T 20115064-A-T DYZ19 **
22345725-A-C 20183839-A-C DYZ19 **
22463425-G-T 20301539-G-T DYZ19 **
22483957-T-C 20322071-T-C DYZ19 **
22520639-A-C 20358753-A-C **
22529531-C-A 20367645-C-A **
22600311-TAA-T 20438425-TAA-T **
22615401-C-A 20453515-C-A **
22651182-C-A 20489296-C-A **
22690138-A-C 20528252-A-C **
22774927-A-C 20613041-A-C **
22810878-T-G 20648992-T-G **
22836786-C-A 20674900-C-A **
22874560-A-T 20712674-A-T **
22916963-A-G 20755077-A-G **
22974311-G-C 20812425-G-C Y131911 **
23315947-C-A 21154061-C-A **
24013846-ACT-A 21867699-ACT-A **
24300833-T-A 22154686-T-A P3_t1 **
24601761-T-TA 22455614-T-TA P3_t2 **
25354508-T-G 23208361-T-G **
25980269-T-A 23834122-T-A P1_Y1 **
25995121-G-T 23848974-G-T P1_Y1 **
26054082-A-C 23907935-A-C P1_Y1 **
26080922-A-T 23934775-A-T P1_Y1 **
26286061-G-T 24139914-G-T P1_Y1 **
26391576-C-A 24245429-C-A P1_Y1 **
26563841-C-T 24417694-C-T P1_g2 **
26563849-C-G 24417702-C-G P1_g2 **
26563875-T-A 24417728-T-A P1_g2 **
27466757-T-G 25320610-T-G P1_Y2 **
27909147-AAAAAA-CCCACC 25763000-AAAAAA-CCCACC P1_Y2 **
28253528-TG-T 26107381-TG-T P1_b4 **
28253537-G-T 26107390-G-T P1_b4 **
28545726-C-A 26399579-C-A **
28609442-A-T 26463295-A-T **
28609445-T-G 26463298-T-G **
28630627-T-A 26484480-T-A **
28636165-C-A 26490018-C-A **
28742435-A-T 26596288-A-T **
28755769-G-T 26609622-G-T **
28761427-C-A 26615280-C-A **
28779041-G-T 26632894-G-T **
28780246-C-A 26634099-C-A **
28818081-G-T 26671934-G-T **
56827941-T-C **
56843483-C-A **
56847519-C-A **
56858042-A-C **
56858908-A-T **
15394196-G-C 13282316-G-C ***
15982168-GA-G,GAAA 13870288-GA-G,GAAA 15×A***
3271721-C-A 3403680-C-A ***
6773431-C-A 6905390-C-A ***
6886854-G-C 7018813-G-C ***
7776593-G-T 7908552-G-T ***
8217896-G-T 8349855-G-T ***
10648111-C-A ***
10679252-C-G ***
10748011-C-A ***
10748021-C-A,T ***
13565992-C-A 11410316-C-A ***
11652768-C-A ***
14384389-G-T 12263685-G-T ***
14394468-TAA-T,TAAA 12273764-TAA-T,TAAA 16×A***
14995471-C-A 12883556-C-A ***
15127799-C-A 13015886-C-A ***
15248764-GAA-G 13136850-GAA-G 12×A***
15279101-T-C 13167200-T-C ***
15623241-T-C 13511361-T-C ***
15993745-C-A 13881865-C-A ***
16344401-C-CTTCTTG 14232521-C-CTTCTTG ***
17264843-CTTATTATTA-C,CTTA 15152963-CTTATTATTA-C,CTTA 15×TTA***
18589694-T-C 16477814-T-C ***
18819738-C-A 16707858-C-A ***
18892165-A-G 16780285-A-G ***
21091365-C-A 18929479-C-A S22554 ***
21362073-C-A 19200187-C-A ***
21425339-CTTTTTT-C,CTTTTT 19263453-CTTTTTT-C,CTTTTT 24×T***
22577951-GAAAA-G,GAAA 20416065-GAAAA-G,GAAA 24×A***
22998856-C-A 20836970-C-A ***
23575879-C-A 21413993-C-A ***
23575880-T-C 21413994-T-C ***
28492352-C-A 26346205-C-A ***
56833014-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.