O'Keefe
BigY2: 315056MDKA Birth:
IrelandTree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
| Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 315056 |
|---|---|---|---|---|---|---|---|
| hg19:Y:28817244-T-A hg38:Y:26671097-T-A | A* | ||||||
| hg19:Y:6674751-G-A hg38:Y:6806710-G-A | BY60672 | Y | Y | + | |||
| hg19:Y:7802696-C-T hg38:Y:7934655-C-T | BY67786 | Y | Y | + | |||
| hg19:Y:18717690-C-A hg38:Y:16605810-C-A | ** | ||||||
| hg19:Y:13471131-G-A hg38:Y:11315455-G-A | ** | ||||||
| hg19:Y:16427427-G-A hg38:Y:14315547-G-A | ** | ||||||
| hg19:Y:20998300-CAA-C hg38:Y:18836414-CAA-C | P4_Dst | 28×A | ** | ||||
| hg38:Y:11645811-C-A | DYZ17 | ** | |||||
| hg38:Y:10693216-T-C | ** | ||||||
| hg19:Y:5426390-CTTTT-C hg38:Y:5558349-CTTTT-C | 17×T | ** | |||||
| hg38:Y:10869979-T-C | ** | ||||||
| hg19:Y:6858618-G-T hg38:Y:6990577-G-T | ** | ||||||
| hg19:Y:5294483-C-A hg38:Y:5426442-C-A | ** | ||||||
| hg19:Y:14216198-C-A hg38:Y:12095492-C-A | ** | ||||||
| hg19:Y:5190912-C-A hg38:Y:5322871-C-A | ** | ||||||
| hg38:Y:10760244-T-TCGCTC | ** | ||||||
| hg38:Y:56839328-G-T | ** | ||||||
| hg19:Y:27936764-CAAA-C hg38:Y:25790617-CAAA-C | P1_Y2 | 15×A | ** | ||||
| hg38:Y:11010261-A-T | ** | ||||||
| hg38:Y:10992615-T-A | ** | ||||||
| hg19:Y:13705486-G-T hg38:Y:11549810-G-T | DYZ17 | ** | |||||
| hg19:Y:19899572-G-T hg38:Y:17787692-G-T | P5_Prx | ** | |||||
| hg19:Y:28779629-C-A hg38:Y:26633482-C-A | ** | ||||||
| hg19:Y:13865559-C-A hg38:Y:11744853-C-A | DYZ17 | ** | |||||
| hg19:Y:2730110-C-T hg38:Y:2862069-C-T | ** | ||||||
| hg19:Y:2758861-A-T hg38:Y:2890820-A-T | ** | ||||||
| hg19:Y:2813754-T-G hg38:Y:2945713-T-G | ** | ||||||
| hg19:Y:2835693-C-A hg38:Y:2967652-C-A | ** | ||||||
| hg19:Y:2842958-C-A hg38:Y:2974917-C-A | ** | ||||||
| hg19:Y:3079466-G-A hg38:Y:3211425-G-A | ** | ||||||
| hg19:Y:3284610-A-G hg38:Y:3416569-A-G | ** | ||||||
| hg19:Y:3346997-A-G hg38:Y:3478956-A-G | ** | ||||||
| hg19:Y:3359756-G-T hg38:Y:3491715-G-T | ** | ||||||
| hg19:Y:3374218-G-T hg38:Y:3506177-G-T | ** | ||||||
| hg19:Y:3388588-C-A hg38:Y:3520547-C-A | ** | ||||||
| hg19:Y:3550706-C-A hg38:Y:3682665-C-A | ** | ||||||
| hg19:Y:3611162-G-T hg38:Y:3743121-G-T | ** | ||||||
| hg19:Y:3625942-C-A hg38:Y:3757901-C-A | ** | ||||||
| hg19:Y:3649095-C-A hg38:Y:3781054-C-A | FT125603 | FT125603 | ** | ||||
| hg19:Y:3705221-T-A hg38:Y:3837180-T-A | ** | ||||||
| hg19:Y:3705280-C-A hg38:Y:3837239-C-A | ** | ||||||
| hg19:Y:3875989-T-A hg38:Y:4007948-T-A | ** | ||||||
| hg19:Y:4049123-C-A hg38:Y:4181082-C-A | ** | ||||||
| hg19:Y:4123652-C-A hg38:Y:4255611-C-A | ** | ||||||
| hg19:Y:4524038-G-T hg38:Y:4655997-G-T | ** | ||||||
| hg19:Y:4547749-C-T hg38:Y:4679708-C-T | ** | ||||||
| hg19:Y:4703763-C-A hg38:Y:4835722-C-A | ** | ||||||
| hg19:Y:4788512-G-C hg38:Y:4920471-G-C | ** | ||||||
| hg19:Y:5170102-C-A hg38:Y:5302061-C-A | ** | ||||||
| hg19:Y:5247151-C-A hg38:Y:5379110-C-A | ** | ||||||
| hg19:Y:5248026-C-A hg38:Y:5379985-C-A | ** | ||||||
| hg19:Y:5275576-G-T hg38:Y:5407535-G-T | ** | ||||||
| hg19:Y:5495343-T-A hg38:Y:5627302-T-A | ** | ||||||
| hg19:Y:5688333-A-T hg38:Y:5820292-A-T | ** | ||||||
| hg19:Y:5688342-A-T hg38:Y:5820301-A-T | ** | ||||||
| hg19:Y:5690163-C-A hg38:Y:5822122-C-A | ** | ||||||
| hg19:Y:5824257-C-A hg38:Y:5956216-C-A | ** | ||||||
| hg19:Y:5933875-C-A hg38:Y:6065834-C-A | ** | ||||||
| hg19:Y:6144599-A-C hg38:Y:6276558-A-C | IR3_Dst | ** | |||||
| hg19:Y:6366629-T-A hg38:Y:6498588-T-A | ** | ||||||
| hg19:Y:6395065-C-A hg38:Y:6527024-C-A | ** | ||||||
| hg19:Y:6401714-T-A hg38:Y:6533673-T-A | ** | ||||||
| hg19:Y:6401734-C-A hg38:Y:6533693-C-A | ** | ||||||
| hg19:Y:6435306-A-T hg38:Y:6567265-A-T | ** | ||||||
| hg19:Y:6492578-T-G hg38:Y:6624537-T-G | FTB54141 | ** | |||||
| hg19:Y:6651324-A-C hg38:Y:6783283-A-C | ** | ||||||
| hg19:Y:6764010-C-A hg38:Y:6895969-C-A | ** | ||||||
| hg19:Y:6765964-T-A hg38:Y:6897923-T-A | ** | ||||||
| hg19:Y:7044904-G-T hg38:Y:7176863-G-T | ** | ||||||
| hg19:Y:7053819-C-A hg38:Y:7185778-C-A | ** | ||||||
| hg19:Y:7078274-C-A hg38:Y:7210233-C-A | ** | ||||||
| hg19:Y:7091377-T-A hg38:Y:7223336-T-A | ** | ||||||
| hg19:Y:7131286-T-G hg38:Y:7263245-T-G | ** | ||||||
| hg19:Y:7131332-A-C hg38:Y:7263291-A-C | ** | ||||||
| hg19:Y:7138392-C-A hg38:Y:7270351-C-A | ** | ||||||
| hg19:Y:7170705-T-A hg38:Y:7302664-T-A | ** | ||||||
| hg19:Y:7217792-C-T hg38:Y:7349751-C-T | ** | ||||||
| hg19:Y:7217793-T-C hg38:Y:7349752-T-C | ** | ||||||
| hg19:Y:7217799-G-A hg38:Y:7349758-G-A | FTB35351 | ** | |||||
| hg19:Y:7263677-C-A hg38:Y:7395636-C-A | ** | ||||||
| hg19:Y:7275135-C-A hg38:Y:7407094-C-A | ** | ||||||
| hg19:Y:7323062-C-A hg38:Y:7455021-C-A | ** | ||||||
| hg19:Y:7572815-C-A hg38:Y:7704774-C-A | ** | ||||||
| hg19:Y:8080700-T-A hg38:Y:8212659-T-A | ** | ||||||
| hg19:Y:8154090-C-G hg38:Y:8286049-C-G | ** | ||||||
| hg19:Y:8184631-T-A hg38:Y:8316590-T-A | ** | ||||||
| hg19:Y:8184633-T-TAC hg38:Y:8316592-T-TAC | ** | ||||||
| hg19:Y:8214441-C-A hg38:Y:8346400-C-A | ** | ||||||
| hg19:Y:8253631-C-A hg38:Y:8385590-C-A | ** | ||||||
| hg19:Y:8253681-C-A hg38:Y:8385640-C-A | ** | ||||||
| hg19:Y:8290199-C-A hg38:Y:8422158-C-A | ** | ||||||
| hg19:Y:8333714-C-A hg38:Y:8465673-C-A | ** | ||||||
| hg19:Y:8376391-C-A hg38:Y:8508350-C-A | ** | ||||||
| hg38:Y:9057382-G-GT | ** | ||||||
| hg19:Y:9094324-C-A hg38:Y:9256715-C-A | ** | ||||||
| hg19:Y:9190317-C-A hg38:Y:9352708-C-A | ** | ||||||
| hg19:Y:9193069-A-G hg38:Y:9355460-A-G | ** | ||||||
| hg19:Y:9461774-G-T hg38:Y:9624165-G-T | ** | ||||||
| hg19:Y:9945299-G-T hg38:Y:10107690-G-T | ** | ||||||
| hg19:Y:9958895-T-G hg38:Y:10121286-T-G | ** | ||||||
| hg19:Y:9962810-T-A hg38:Y:10125201-T-A | ** | ||||||
| hg19:Y:9979095-A-T hg38:Y:10141486-A-T | ** | ||||||
| hg19:Y:10029885-A-T hg38:Y:10192276-A-T | ** | ||||||
| hg19:Y:10045407-C-A hg38:Y:10207798-C-A | ** | ||||||
| hg38:Y:10672990-T-A | ** | ||||||
| hg38:Y:10682493-A-T | ** | ||||||
| hg38:Y:10682494-C-G | ** | ||||||
| hg38:Y:10682499-T-TAGAC | ** | ||||||
| hg38:Y:10682515-T-TC | ** | ||||||
| hg38:Y:10693171-C-T | ** | ||||||
| hg38:Y:10693168-CCACTACACTA-C | ** | ||||||
| hg38:Y:10693203-T-C | ** | ||||||
| hg38:Y:10693205-T-A | ** | ||||||
| hg38:Y:10693206-C-T | ** | ||||||
| hg38:Y:10776023-TG-T | ** | ||||||
| hg38:Y:10776026-A-AG | ** | ||||||
| hg38:Y:10808598-T-G | ** | ||||||
| hg38:Y:10825291-A-T | ** | ||||||
| hg38:Y:10825311-A-G | ** | ||||||
| hg38:Y:10834221-C-CACTTT | ** | ||||||
| hg38:Y:10834228-T-C | ** | ||||||
| hg38:Y:10834233-T-C | ** | ||||||
| hg38:Y:10834238-G-C | ** | ||||||
| hg38:Y:10834241-A-C | ** | ||||||
| hg38:Y:10834245-G-C | ** | ||||||
| hg38:Y:10834252-T-A | ** | ||||||
| hg38:Y:10834269-T-TCCATA | ** | ||||||
| hg38:Y:10865283-AT-A | ** | ||||||
| hg38:Y:10869945-T-A | ** | ||||||
| hg38:Y:10869948-A-G | ** | ||||||
| hg38:Y:10869999-T-A | ** | ||||||
| hg38:Y:10911737-A-T | ** | ||||||
| hg38:Y:10911739-A-C | ** | ||||||
| hg38:Y:10946115-G-T | ** | ||||||
| hg38:Y:10969007-AC-A | ** | ||||||
| hg38:Y:10969018-C-T | ** | ||||||
| hg38:Y:10969019-T-A | ** | ||||||
| hg38:Y:10969032-A-C | ** | ||||||
| hg38:Y:10969058-C-G | ** | ||||||
| hg38:Y:10977103-C-G | ** | ||||||
| hg38:Y:10977119-A-T | ** | ||||||
| hg38:Y:10994159-C-A | ** | ||||||
| hg38:Y:10999885-A-C | ** | ||||||
| hg38:Y:11009239-T-A | ** | ||||||
| hg19:Y:13198030-C-A hg38:Y:11042354-C-A | ** | ||||||
| hg19:Y:13228184-C-A hg38:Y:11072508-C-A | ** | ||||||
| hg19:Y:13255187-C-A hg38:Y:11099511-C-A | ** | ||||||
| hg19:Y:13255970-C-A hg38:Y:11100294-C-A | ** | ||||||
| hg19:Y:13271677-C-A hg38:Y:11116001-C-A | ** | ||||||
| hg19:Y:13282362-C-A hg38:Y:11126686-C-A | ** | ||||||
| hg19:Y:13288609-A-C hg38:Y:11132933-A-C | ** | ||||||
| hg19:Y:13296421-T-C hg38:Y:11140745-T-C | ** | ||||||
| hg19:Y:13310669-C-A hg38:Y:11154993-C-A | ** | ||||||
| hg19:Y:13323510-A-AT hg38:Y:11167834-A-AT | ** | ||||||
| hg19:Y:13349954-A-T hg38:Y:11194278-A-T | ** | ||||||
| hg19:Y:13446436-C-A hg38:Y:11290760-C-A | ** | ||||||
| hg19:Y:13453121-T-A hg38:Y:11297445-T-A | ** | ||||||
| hg19:Y:13453124-C-GGGTTG hg38:Y:11297448-C-GGGTTG | ** | ||||||
| hg19:Y:13453207-T-G hg38:Y:11297531-T-G | ** | ||||||
| hg19:Y:13453243-C-T hg38:Y:11297567-C-T | ** | ||||||
| hg19:Y:13456702-C-A hg38:Y:11301026-C-A | ** | ||||||
| hg19:Y:13457532-T-A hg38:Y:11301856-T-A | 6×ATTCC | ** | |||||
| hg19:Y:13457778-CTCGGA-C hg38:Y:11302102-CTCGGA-C | ** | ||||||
| hg19:Y:13475417-G-A hg38:Y:11319741-G-A | ** | ||||||
| hg19:Y:13603062-T-C hg38:Y:11447386-T-C | ** | ||||||
| hg19:Y:13696253-A-T hg38:Y:11540577-A-T | DYZ17 | ** | |||||
| hg19:Y:13696296-C-A hg38:Y:11540620-C-A | DYZ17 | ** | |||||
| hg19:Y:13698614-A-C hg38:Y:11542938-A-C | DYZ17 | ** | |||||
| hg19:Y:13705521-G-T hg38:Y:11549845-G-T | DYZ17 | ** | |||||
| hg38:Y:11648746-A-C | DYZ17 | ** | |||||
| hg38:Y:11648987-A-C | DYZ17 | ** | |||||
| hg38:Y:11652727-A-G | DYZ17 | ** | |||||
| hg19:Y:13798756-T-G hg38:Y:11678050-T-G | DYZ17 | ** | |||||
| hg19:Y:13833212-C-A hg38:Y:11712506-C-A | DYZ17 | ** | |||||
| hg19:Y:13857806-G-T hg38:Y:11737100-G-T | DYZ17 | ** | |||||
| hg19:Y:13884864-G-GAAA hg38:Y:11764158-G-GAAA | 11×A | ** | |||||
| hg19:Y:14009498-T-C hg38:Y:11888792-T-C | ** | ||||||
| hg19:Y:14011271-G-T hg38:Y:11890565-G-T | ** | ||||||
| hg19:Y:14068457-C-A hg38:Y:11947751-C-A | ** | ||||||
| hg19:Y:14079682-C-A hg38:Y:11958976-C-A | ** | ||||||
| hg19:Y:14158238-C-A hg38:Y:12037532-C-A | ** | ||||||
| hg19:Y:14191962-G-T hg38:Y:12071256-G-T | ** | ||||||
| hg19:Y:14300567-C-A hg38:Y:12179861-C-A | ** | ||||||
| hg19:Y:14366514-C-A hg38:Y:12245809-C-A | ** | ||||||
| hg19:Y:14424215-A-T hg38:Y:12303490-A-T | ** | ||||||
| hg19:Y:14443079-A-C hg38:Y:12322352-A-C | ** | ||||||
| hg19:Y:14471832-C-A hg38:Y:12351101-C-A | ** | ||||||
| hg19:Y:14479713-G-C hg38:Y:12358982-G-C | ** | ||||||
| hg19:Y:14524690-G-T hg38:Y:12412891-G-T | ** | ||||||
| hg19:Y:14546825-G-T hg38:Y:12435026-G-T | ** | ||||||
| hg19:Y:14554353-C-A hg38:Y:12442554-C-A | ** | ||||||
| hg19:Y:14581053-T-G hg38:Y:12469253-T-G | ** | ||||||
| hg19:Y:14581066-A-C hg38:Y:12469266-A-C | ** | ||||||
| hg19:Y:14600520-C-A hg38:Y:12488720-C-A | ** | ||||||
| hg19:Y:14661469-C-A hg38:Y:12549534-C-A | ** | ||||||
| hg19:Y:14675664-T-A hg38:Y:12563730-T-A | ** | ||||||
| hg19:Y:14701021-G-A hg38:Y:12589087-G-A | Y23228 | ** | |||||
| hg19:Y:14723909-T-A hg38:Y:12611977-T-A | ** | ||||||
| hg19:Y:14723932-A-T hg38:Y:12612000-A-T | ** | ||||||
| hg19:Y:14726726-T-A hg38:Y:12614794-T-A | ** | ||||||
| hg19:Y:14735174-C-A hg38:Y:12623242-C-A | ** | ||||||
| hg19:Y:14943506-C-A hg38:Y:12831580-C-A | ** | ||||||
| hg19:Y:14953496-G-T hg38:Y:12841570-G-T | ** | ||||||
| hg19:Y:15060814-A-T hg38:Y:12948906-A-T | ** | ||||||
| hg19:Y:15092286-A-G hg38:Y:12980375-A-G | ** | ||||||
| hg19:Y:15128124-T-G hg38:Y:13016211-T-G | ** | ||||||
| hg19:Y:15157236-C-A hg38:Y:13045323-C-A | ** | ||||||
| hg19:Y:15157374-G-A hg38:Y:13045461-G-A | ** | ||||||
| hg19:Y:15197426-A-G hg38:Y:13085512-A-G | ** | ||||||
| hg19:Y:15279400-A-C hg38:Y:13167499-A-C | ** | ||||||
| hg19:Y:15375948-T-G hg38:Y:13264068-T-G | ** | ||||||
| hg19:Y:15400211-C-A hg38:Y:13288331-C-A | ** | ||||||
| hg19:Y:15626381-T-C hg38:Y:13514501-T-C | ** | ||||||
| hg19:Y:15648655-G-A hg38:Y:13536775-G-A | ** | ||||||
| hg19:Y:15682291-G-A hg38:Y:13570411-G-A | ** | ||||||
| hg19:Y:15769174-G-T hg38:Y:13657294-G-T | ** | ||||||
| hg19:Y:15832213-C-A hg38:Y:13720333-C-A | ** | ||||||
| hg19:Y:15941487-C-A hg38:Y:13829607-C-A | ** | ||||||
| hg19:Y:16017761-C-A hg38:Y:13905881-C-A | ** | ||||||
| hg19:Y:16017782-C-A hg38:Y:13905902-C-A | ** | ||||||
| hg19:Y:16020776-C-A hg38:Y:13908896-C-A | ** | ||||||
| hg19:Y:16047183-C-A hg38:Y:13935303-C-A | ** | ||||||
| hg19:Y:16070680-T-G hg38:Y:13958800-T-G | ** | ||||||
| hg19:Y:16071904-C-A hg38:Y:13960024-C-A | ** | ||||||
| hg19:Y:16181181-T-G hg38:Y:14069301-T-G | ** | ||||||
| hg19:Y:16278453-C-A hg38:Y:14166573-C-A | ** | ||||||
| hg19:Y:16437372-C-A hg38:Y:14325492-C-A | ** | ||||||
| hg19:Y:16464692-G-T hg38:Y:14352812-G-T | ** | ||||||
| hg19:Y:16539474-C-T hg38:Y:14427594-C-T | ** | ||||||
| hg19:Y:16562738-G-A hg38:Y:14450858-G-A | ** | ||||||
| hg19:Y:16562888-C-G hg38:Y:14451008-C-G | ** | ||||||
| hg19:Y:16746286-G-T hg38:Y:14634406-G-T | ** | ||||||
| hg19:Y:16783365-C-A hg38:Y:14671485-C-A | ** | ||||||
| hg19:Y:16842060-C-A hg38:Y:14730180-C-A | ** | ||||||
| hg19:Y:16860800-G-A hg38:Y:14748920-G-A | ** | ||||||
| hg19:Y:16938577-C-A hg38:Y:14826697-C-A | ** | ||||||
| hg19:Y:16993301-G-T hg38:Y:14881421-G-T | ** | ||||||
| hg19:Y:17028803-C-A hg38:Y:14916923-C-A | ** | ||||||
| hg19:Y:17199533-C-A hg38:Y:15087653-C-A | ** | ||||||
| hg19:Y:17217476-C-A hg38:Y:15105596-C-A | ** | ||||||
| hg19:Y:17318419-C-A hg38:Y:15206539-C-A | ** | ||||||
| hg19:Y:17403733-C-A hg38:Y:15291853-C-A | ** | ||||||
| hg19:Y:17511636-T-A hg38:Y:15399756-T-A | ** | ||||||
| hg19:Y:17517295-C-A hg38:Y:15405415-C-A | ** | ||||||
| hg19:Y:17535599-C-A hg38:Y:15423719-C-A | ** | ||||||
| hg19:Y:17633314-C-A hg38:Y:15521434-C-A | ** | ||||||
| hg19:Y:17693747-C-A hg38:Y:15581867-C-A | ** | ||||||
| hg19:Y:17859762-C-A hg38:Y:15747882-C-A | ** | ||||||
| hg19:Y:17859778-T-C hg38:Y:15747898-T-C | ** | ||||||
| hg19:Y:17865362-C-A hg38:Y:15753482-C-A | ** | ||||||
| hg19:Y:17929730-A-T hg38:Y:15817850-A-T | ** | ||||||
| hg19:Y:17929745-A-T hg38:Y:15817865-A-T | ** | ||||||
| hg19:Y:17981933-C-A hg38:Y:15870053-C-A | ** | ||||||
| hg19:Y:18020885-C-A hg38:Y:15909005-C-A | ** | ||||||
| hg19:Y:18080345-T-G hg38:Y:15968465-T-G | ** | ||||||
| hg19:Y:18158647-C-A hg38:Y:16046767-C-A | ** | ||||||
| hg19:Y:18179579-A-T hg38:Y:16067699-A-T | ** | ||||||
| hg19:Y:18190430-C-T hg38:Y:16078550-C-T | ** | ||||||
| hg19:Y:18247337-G-A hg38:Y:16135457-G-A | ** | ||||||
| hg19:Y:18354156-G-A hg38:Y:16242276-G-A | P6_Prx | ** | |||||
| hg19:Y:18354170-G-A hg38:Y:16242290-G-A | A3873 | P6_Prx | ** | ||||
| hg19:Y:18364942-A-T hg38:Y:16253062-A-T | P6_Prx | ** | |||||
| hg19:Y:18364957-T-G hg38:Y:16253077-T-G | P6_Prx | ** | |||||
| hg19:Y:18364964-A-T hg38:Y:16253084-A-T | P6_Prx | ** | |||||
| hg19:Y:18364975-A-C hg38:Y:16253095-A-C | P6_Prx | ** | |||||
| hg19:Y:18364990-G-T hg38:Y:16253110-G-T | P6_Prx | ** | |||||
| hg19:Y:18388290-T-A hg38:Y:16276410-T-A | P6_Gap | ** | |||||
| hg19:Y:18645850-C-A hg38:Y:16533970-C-A | ** | ||||||
| hg19:Y:18738263-C-A hg38:Y:16626383-C-A | FTB76768 | ** | |||||
| hg19:Y:18752053-GCCC-G hg38:Y:16640173-GCCC-G | ** | ||||||
| hg19:Y:18836899-C-A hg38:Y:16725019-C-A | ** | ||||||
| hg19:Y:18855616-G-T hg38:Y:16743736-G-T | ** | ||||||
| hg19:Y:18966933-C-A hg38:Y:16855053-C-A | ** | ||||||
| hg19:Y:19270582-C-A hg38:Y:17158702-C-A | ** | ||||||
| hg19:Y:19297945-C-A hg38:Y:17186065-C-A | ** | ||||||
| hg19:Y:19298033-C-A hg38:Y:17186153-C-A | FTA41001 | ** | |||||
| hg19:Y:19356369-G-T hg38:Y:17244489-G-T | ** | ||||||
| hg19:Y:19415394-A-G hg38:Y:17303514-A-G | ** | ||||||
| hg19:Y:19663400-T-A hg38:Y:17551520-T-A | P5_Prx | ** | |||||
| hg19:Y:19842157-G-T hg38:Y:17730277-G-T | P5_Prx | ** | |||||
| hg19:Y:19877214-G-T hg38:Y:17765334-G-T | P5_Prx | ** | |||||
| hg19:Y:19877215-G-T hg38:Y:17765335-G-T | P5_Prx | ** | |||||
| hg19:Y:19877223-G-T hg38:Y:17765343-G-T | P5_Prx | ** | |||||
| hg19:Y:20248613-C-A hg38:Y:18086727-C-A | P5_Dst | ** | |||||
| hg19:Y:20248620-C-G hg38:Y:18086734-C-G | P5_Dst | ** | |||||
| hg19:Y:20248636-A-T hg38:Y:18086750-A-T | P5_Dst | ** | |||||
| hg19:Y:20248640-G-T hg38:Y:18086754-G-T | P5_Dst | ** | |||||
| hg19:Y:20248656-A-T hg38:Y:18086770-A-T | P5_Dst | ** | |||||
| hg19:Y:20416353-A-C hg38:Y:18254467-A-C | P5_Dst | ** | |||||
| hg19:Y:20416398-T-TA hg38:Y:18254512-T-TA | P5_Dst | ** | |||||
| hg19:Y:20620483-C-A hg38:Y:18458597-C-A | P4_Prx | ** | |||||
| hg19:Y:20707295-A-T hg38:Y:18545409-A-T | P4_Prx | ** | |||||
| hg19:Y:20771823-A-C hg38:Y:18609937-A-C | P4_Prx | ** | |||||
| hg19:Y:20778610-C-A hg38:Y:18616724-C-A | P4_Prx | ** | |||||
| hg19:Y:21125709-G-T hg38:Y:18963823-G-T | ** | ||||||
| hg19:Y:21166815-A-T hg38:Y:19004929-A-T | ** | ||||||
| hg19:Y:21222109-C-A hg38:Y:19060223-C-A | ** | ||||||
| hg19:Y:21235115-C-A hg38:Y:19073229-C-A | ** | ||||||
| hg19:Y:21242981-G-T hg38:Y:19081095-G-T | ** | ||||||
| hg19:Y:21846548-C-A hg38:Y:19684662-C-A | ** | ||||||
| hg19:Y:21923986-C-A hg38:Y:19762100-C-A | ** | ||||||
| hg19:Y:21948933-C-G hg38:Y:19787047-C-G | FT106060 | ** | |||||
| hg19:Y:21948952-A-T hg38:Y:19787066-A-T | ** | ||||||
| hg19:Y:21949736-G-T hg38:Y:19787850-G-T | ** | ||||||
| hg19:Y:21954379-C-A hg38:Y:19792493-C-A | ** | ||||||
| hg19:Y:21993879-G-T hg38:Y:19831993-G-T | ** | ||||||
| hg19:Y:22064714-G-T hg38:Y:19902828-G-T | ** | ||||||
| hg19:Y:22075810-C-A hg38:Y:19913924-C-A | ** | ||||||
| hg19:Y:22125711-T-A hg38:Y:19963825-T-A | ** | ||||||
| hg19:Y:22133925-C-A hg38:Y:19972039-C-A | ** | ||||||
| hg19:Y:22264989-T-G hg38:Y:20103103-T-G | DYZ19 | ** | |||||
| hg19:Y:22335165-T-A hg38:Y:20173279-T-A | DYZ19 | ** | |||||
| hg19:Y:22587747-T-A hg38:Y:20425861-T-A | ** | ||||||
| hg19:Y:22649455-C-A hg38:Y:20487569-C-A | ** | ||||||
| hg19:Y:22715168-G-T hg38:Y:20553282-G-T | ** | ||||||
| hg19:Y:22881321-C-A hg38:Y:20719435-C-A | ** | ||||||
| hg19:Y:23036830-C-A hg38:Y:20874944-C-A | ** | ||||||
| hg19:Y:23058570-C-A hg38:Y:20896684-C-A | ** | ||||||
| hg19:Y:23058656-C-A hg38:Y:20896770-C-A | ** | ||||||
| hg19:Y:23204894-C-A hg38:Y:21043008-C-A | ** | ||||||
| hg19:Y:23255289-C-A hg38:Y:21093403-C-A | ** | ||||||
| hg19:Y:23274736-A-T hg38:Y:21112850-A-T | ** | ||||||
| hg19:Y:23276537-C-A hg38:Y:21114651-C-A | ** | ||||||
| hg19:Y:23397041-C-A hg38:Y:21235155-C-A | ** | ||||||
| hg19:Y:23446982-T-A hg38:Y:21285096-T-A | ** | ||||||
| hg19:Y:23579427-C-A hg38:Y:21417541-C-A | ** | ||||||
| hg19:Y:23813877-G-T hg38:Y:21651991-G-T | ** | ||||||
| hg19:Y:23818341-T-A hg38:Y:21656455-T-A | ** | ||||||
| hg19:Y:23848389-G-T hg38:Y:21686503-G-T | ** | ||||||
| hg19:Y:24295335-T-A hg38:Y:22149188-T-A | P3_t1 | ** | |||||
| hg19:Y:24618824-G-T hg38:Y:22472677-G-T | P3_t2 | ** | |||||
| hg19:Y:24618894-C-A hg38:Y:22472747-C-A | P3_t2 | ** | |||||
| hg19:Y:24751210-G-T hg38:Y:22605063-G-T | P3_b2 | ** | |||||
| hg19:Y:24928665-T-A hg38:Y:22782518-T-A | g1 | ** | |||||
| hg19:Y:24928670-T-C hg38:Y:22782523-T-C | g1 | ** | |||||
| hg19:Y:25709424-G-T hg38:Y:23563277-G-T | P1_b3 | ** | |||||
| hg19:Y:25785857-T-A hg38:Y:23639710-T-A | P1_b3 | ** | |||||
| hg19:Y:25785868-T-C hg38:Y:23639721-T-C | P1_b3 | ** | |||||
| hg19:Y:25785879-G-C hg38:Y:23639732-G-C | P1_b3 | ** | |||||
| hg19:Y:25785880-G-C hg38:Y:23639733-G-C | P1_b3 | ** | |||||
| hg19:Y:25849902-C-A hg38:Y:23703755-C-A | P1_Y1 | ** | |||||
| hg19:Y:25849919-C-A hg38:Y:23703772-C-A | P1_Y1 | ** | |||||
| hg19:Y:25849928-G-T hg38:Y:23703781-G-T | P1_Y1 | ** | |||||
| hg19:Y:25849945-C-A hg38:Y:23703798-C-A | P1_Y1 | ** | |||||
| hg19:Y:26071923-A-T hg38:Y:23925776-A-T | BY28195 | P1_Y1 | ** | ||||
| hg19:Y:26730168-C-A hg38:Y:24584021-C-A | P1_g2 | ** | |||||
| hg19:Y:27584569-G-T hg38:Y:25438422-G-T | P1_Y2 | ** | |||||
| hg19:Y:27637299-C-A hg38:Y:25491152-C-A | P1_Y2 | ** | |||||
| hg19:Y:27952130-C-A hg38:Y:25805983-C-A | P1_Y2 | ** | |||||
| hg19:Y:27966896-TATAC-T hg38:Y:25820749-TATAC-T | P1_Y2 | ** | |||||
| hg19:Y:28087315-G-T hg38:Y:25941168-G-T | P1_Y2 | ** | |||||
| hg19:Y:28438171-C-T hg38:Y:26292024-C-T | P1_gr2 | ** | |||||
| hg19:Y:28561898-T-G hg38:Y:26415751-T-G | ** | ||||||
| hg19:Y:28591736-G-T hg38:Y:26445589-G-T | ** | ||||||
| hg19:Y:28640574-A-T hg38:Y:26494427-A-T | ** | ||||||
| hg19:Y:28698003-G-T hg38:Y:26551856-G-T | ** | ||||||
| hg19:Y:28729973-T-TA hg38:Y:26583826-T-TA | ** | ||||||
| hg19:Y:28773545-C-A hg38:Y:26627398-C-A | ** | ||||||
| hg38:Y:56847938-C-A | ** | ||||||
| hg38:Y:56858350-AAGAAAGAAAG-A | ** | ||||||
| hg38:Y2:29693-C-T | ** | ||||||
| hg19:Y:28784476-C-A,G hg38:Y:26638329-C-A,G | *** | ||||||
| hg19:Y:15059682-C-A hg38:Y:12947774-C-A | FT413526 | *** | |||||
| hg19:Y:15740554-C-A hg38:Y:13628674-C-A | *** | ||||||
| hg19:Y:23787056-C-A hg38:Y:21625170-C-A | *** | ||||||
| hg38:Y:11643763-G-T | DYZ17 | *** | |||||
| hg19:Y:8563740-A-T hg38:Y:8695699-A-T | *** | ||||||
| hg19:Y:21084353-G-A hg38:Y:18922467-G-A | F23866 | *** | |||||
| hg19:Y:3992043-C-A hg38:Y:4124002-C-A | *** | ||||||
| hg19:Y:7256093-GA-G,GAAAA hg38:Y:7388052-GA-G,GAAAA | 18×A | *** | |||||
| hg19:Y:7569539-C-A hg38:Y:7701498-C-A | *** | ||||||
| hg19:Y:8102537-C-A hg38:Y:8234496-C-A | *** | ||||||
| hg19:Y:8658950-C-A hg38:Y:8790909-C-A | *** | ||||||
| hg38:Y:9124942-G-T | *** | ||||||
| hg38:Y:10789334-C-T | *** | ||||||
| hg38:Y:10789359-C-CTGGTT | *** | ||||||
| hg38:Y:10789361-A-G | *** | ||||||
| hg38:Y:10789429-C-T | *** | ||||||
| hg38:Y:10992691-C-A | *** | ||||||
| hg19:Y:13196157-C-A hg38:Y:11040481-C-A | *** | ||||||
| hg19:Y:13254346-G-A hg38:Y:11098670-G-A | *** | ||||||
| hg19:Y:13452073-C-A hg38:Y:11296397-C-A | *** | ||||||
| hg19:Y:13453458-C-G hg38:Y:11297782-C-G | *** | ||||||
| hg19:Y:13463600-C-A hg38:Y:11307924-C-A | *** | ||||||
| hg19:Y:13463771-CG-C hg38:Y:11308095-CG-C | *** | ||||||
| hg19:Y:13470862-G-T hg38:Y:11315186-G-T | *** | ||||||
| hg19:Y:13470905-A-T hg38:Y:11315229-A-T | *** | ||||||
| hg19:Y:13489880-C-G hg38:Y:11334204-C-G | *** | ||||||
| hg19:Y:13798833-G-T hg38:Y:11678127-G-T | DYZ17 | *** | |||||
| hg19:Y:13842712-CGAGTG-C hg38:Y:11722006-CGAGTG-C | DYZ17 | *** | |||||
| hg19:Y:14073075-C-T hg38:Y:11952369-C-T | *** | ||||||
| hg19:Y:14453727-AG-A hg38:Y:12333000-AG-A | *** | ||||||
| hg19:Y:16791081-AT-A hg38:Y:14679201-AT-A | *** | ||||||
| hg19:Y:16818677-AATATATATATATATATAT-A hg38:Y:14706797-AATATATATATATATATAT-A | 12×AT | *** | |||||
| hg19:Y:17037388-C-A hg38:Y:14925508-C-A | *** | ||||||
| hg19:Y:18274966-G-T hg38:Y:16163086-G-T | P6_Prx | *** | |||||
| hg19:Y:18565016-C-A hg38:Y:16453136-C-A | *** | ||||||
| hg19:Y:21238789-C-A hg38:Y:19076903-C-A | *** | ||||||
| hg19:Y:22592806-C-A hg38:Y:20430920-C-A | *** | ||||||
| hg19:Y:25995054-T-TAC hg38:Y:23848907-T-TAC | P1_Y1 | *** | |||||
| hg19:Y:27714997-A-G hg38:Y:25568850-A-G | P1_Y2 | *** | |||||
| hg19:Y:28784690-G-C hg38:Y:26638543-G-C | *** | ||||||
| hg19:Y:28784704-G-T hg38:Y:26638557-G-T | *** | ||||||
| hg38:Y:56828829-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
| All | McDonald | YFull | |
| Kit: 315056 | 9348897 | 7677387 | 7599432 |
| Used in age calculations | 9348897 | 7677387 | 7599432 |
| Counts of SNPs | 2 | 2 |
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