Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > ZZ77 > Z216 > S452 > ZZ82 > Z697 > Z214 > Z279 > Z20821 > CTS7927

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B189437
13804427-C-T 11683721-C-T BY43245 +
17910572-C-G 15798692-C-G BY118358 YY+
8834072-T-A 8966031-T-A BY76196 YY+
9904064-T-G 10066455-T-G BY81940 Y+
8594631-G-C 8726590-G-C BY74373 YY+
21948586-G-A 19786700-G-A BY136626 YY+
8430242-GC-G 8562201-GC-G +
2695286-G-A 2827245-G-A BY55840 YY+
22289160-T-G 20127274-T-G BY216295 DYZ19 +
22462990-T-G 20301104-T-G BY221025 DYZ19 +
22886818-C-T 20724932-C-T BY44429 YY+
18548471-T-G 16436591-T-G BY122080 Y+
23505810-T-C 21343924-T-C BY145829 YY+
23971745-G-C 21825598-G-C BY148896 Y+
15159420-T-C 13047506-T-C BY99974 YY+
18044810-A-T 15932930-A-T BY119419 YY+
14790740-C-G 12678811-C-G BY97615 YY+
15942760-GTAGA-G 13830880-GTAGA-G 7×TAGA+
28781778-G-A 26635631-G-A BY151189 +
15716062-G-A 13604182-G-A BY103544 YY+
16819968-CAA-C 14708088-CAA-C +
22304211-G-T 20142325-G-T BY200506 DYZ19 *
22255295-A-G,T 20093409-A-G,T DYZ19 *
8540124-T-TTG 8672083-T-TTG 10×TG*
15556685-C-A 13444805-C-A **
14280850-A-T 12160144-A-T **
14146635-C-A 12025929-C-A **
14124087-C-A 12003381-C-A **
15844812-T-G 13732932-T-G **
15774906-G-T 13663026-G-T **
15909754-CATATATATATATATATATAT-C 13797874-CATATATATATATATATATAT-C 18×AT**
14108825-C-A 11988119-C-A **
15995245-C-A 13883365-C-A Y95306 **
13941528-C-A 11820822-C-A **
13898734-G-T 11778028-G-T **
11677192-G-T **
15995271-C-A 13883391-C-A **
13722401-G-T 11566725-G-T **
14296865-C-A 12176159-C-A **
14518607-G-T 12406808-G-T **
14382472-A-T 12261768-A-T **
15070367-A-G 12958458-A-G **
15452378-C-A 13340498-C-A **
15393121-A-C 13281241-A-C **
15325006-TTAAATAAA-T 13213124-TTAAATAAA-T 7×TAAA**
15556712-T-C 13444832-T-C **
15193564-A-C 13081650-A-C **
15183014-C-A 13071100-C-A **
15645647-G-T 13533767-G-T **
14981908-C-G 12869976-C-G **
12370765-A-T **
15731078-T-A 13619198-T-A **
13604418-C-A 11448742-C-A **
15731144-C-G 13619264-C-G **
14742278-G-T 12630346-G-T **
14730679-C-A 12618747-C-A **
14678749-T-A 12566815-T-A **
14557994-C-A 12446195-C-A **
15533047-C-A 13421167-C-A **
13698857-G-T 11543181-G-T **
13233491-C-A 11077815-C-A **
13566739-A-T 11411063-A-T **
10918491-C-A **
10940791-A-C **
10938366-C-A **
10921517-A-T **
10919609-G-A **
10919598-G-A **
10919596-C-T **
10919595-T-A **
10919589-C-A **
10918507-T-C **
10918484-C-CA **
10940805-C-G **
10918483-T-G **
10918462-T-A **
10918461-T-C **
10918445-C-A **
10918439-G-A **
10900709-C-A **
10895825-C-T **
10883781-A-C **
10870094-T-G **
10940803-C-T **
10940823-T-A **
13454452-C-A 11298776-C-A **
11014498-A-C **
13294009-C-A 11138333-C-A **
13273804-C-A 11118128-C-A **
13235641-C-A 11079965-C-A **
13235589-C-T 11079913-C-T **
16047600-C-A 13935720-C-A **
11037140-T-G **
11025550-A-C **
11014511-C-CCCCTA **
11014502-T-A **
10994633-C-A **
10940834-A-T **
10989108-ACACCAC-A **
10980725-A-T **
10973912-C-T **
10973897-C-A **
10950898-C-G **
10950893-T-C **
10940901-C-T **
10940870-A-T **
10940845-G-C **
10940844-T-A **
16029202-C-A 13917322-C-A **
17065997-G-T 14954117-G-T **
16394777-C-T 14282897-C-T **
22335244-G-T 20173358-G-T DYZ19 **
23306076-C-A 21144190-C-A **
23144357-C-A 20982471-C-A **
23041137-G-T 20879251-G-T **
22880869-C-A 20718983-C-A **
22713059-C-A 20551173-C-A **
22666071-T-C 20504185-T-C **
22592271-T-G 20430385-T-G **
22529878-AG-A 20367992-AG-A 9×G**
22335236-A-C 20173350-A-C DYZ19 **
24376418-A-C 22230271-A-C **
22335180-C-G 20173294-C-G DYZ19 **
22159669-C-A 19997783-C-A **
22114413-G-T 19952527-G-T **
21985196-A-C 19823310-A-C **
21926515-A-G 19764629-A-G **
21926051-A-G 19764165-A-G **
21863829-C-A 19701943-C-A **
21853676-T-C 19691790-T-C **
21766533-AATATATATATAT-A 19604647-AATATATATATAT-A 19×AT**
23808107-A-T 21646221-A-T **
24672654-G-T 22526507-G-T P3_b2 **
21489006-C-A 19327120-C-A **
28623388-G-A 26477241-G-A **
56834941-G-T **
56828154-C-A **
56827621-T-C **
56730407-G-T **
28818895-G-A 26672748-G-A **
28768636-C-A 26622489-C-A **
28764187-C-A 26618040-C-A **
28699824-C-A 26553677-C-A **
28640476-C-A 26494329-C-A **
28551641-T-C 26405494-T-C **
24870063-A-C 22723916-A-C P3_b2 **
28551637-C-T 26405490-C-T **
28549864-GAA-G 26403717-GAA-G **
28534320-C-A 26388173-C-A FT2339 **
28465821-T-C 26319674-T-C **
27847756-G-GTA 25701609-G-GTA P1_Y2 **
27826526-C-A 25680379-C-A P1_Y2 **
27636239-C-A 25490092-C-A P1_Y2 **
27618189-T-G 25472042-T-G P1_Y2 **
24931636-C-A 22785489-C-A g1 **
21735287-C-A 19573401-C-A **
21389733-A-C 19227847-A-C **
16410190-A-T 14298310-A-T **
17653974-C-A 15542094-C-A **
18215714-C-A 16103834-C-A **
18138167-A-C 16026287-A-C **
18022348-C-A 15910468-C-A **
17997351-G-A 15885471-G-A P7_Gap **
17885713-C-A 15773833-C-A **
17864793-GT-G 15752913-GT-G 9×T**
17831024-A-T 15719144-A-T **
17801976-C-G 15690096-C-G **
17633740-C-A 15521860-C-A **
18423857-A-T 16311977-A-T P6_Gap **
17584300-G-A 15472420-G-A **
17535579-C-A 15423699-C-A **
17479150-C-A 15367270-C-A **
10866013-A-ATTCCG **
16942096-C-A 14830216-C-A **
16789591-C-T 14677711-C-T **
16743153-G-T 14631273-G-T **
16464942-G-T 14353062-G-T **
16424869-T-A 14312989-T-A **
18422639-C-A 16310759-C-A P6_Gap **
18762097-C-A 16650217-C-A **
21373541-T-G 19211655-T-G **
19727408-T-A 17615528-T-A P5_Prx **
21346265-C-A 19184379-C-A **
21185095-C-A 19023209-C-A **
21154529-G-T 18992643-G-T **
21153922-C-A 18992036-C-A **
21056423-G-T 18894537-G-T **
20778697-C-A 18616811-C-A P4_Prx **
19925907-C-A 17814027-C-A P5_Prx **
19794880-A-T 17683000-A-T P5_Prx **
19791402-T-A 17679522-T-A P5_Prx **
19499045-A-T 17387165-A-T **
18792767-C-A 16680887-C-A **
19413286-T-A 17301406-T-A **
19297089-C-A 17185209-C-A **
19107083-A-T 16995203-A-T **
19049603-C-A 16937723-C-A **
19040704-C-A 16928824-C-A **
19009253-C-A 16897373-C-A **
18965975-AAGCCTTCCTTCC-A 16854095-AAGCCTTCCTTCC-A **
18963850-C-A 16851970-C-A **
18959212-C-A 16847332-C-A **
10866027-C-A **
10911786-ACC-A **
10845379-G-T **
21238605-A-C 19076719-A-C **
3555902-G-T 3687861-G-T **
3550689-C-A 3682648-C-A **
3271154-T-C 3403113-T-C **
3002969-C-A 3134928-C-A **
2903365-C-A 3035324-C-A **
2773791-A-G 2905750-A-G **
2744733-A-T 2876692-A-T **
2729885-C-A 2861844-C-A **
2649571-G-T 2781530-G-T **
10818701-C-A **
3599044-C-A 3731003-C-A **
3606102-C-A 3738061-C-A **
28794203-G-T 26648056-G-T **
10747090-A-T **
19979866-T-TG 17867986-T-TG P5_Prx **
10682547-C-A BY83692 **
13710036-C-A 11554360-C-A **
14589367-C-A 12477567-C-A **
3961392-TA-T 4093351-TA-T 8×A**
21476983-C-A 19315097-C-A **
3559871-A-C 3691830-A-C **
3627903-C-A 3759862-C-A **
4388591-C-A 4520550-C-A **
5172179-A-T 5304138-A-T **
5989005-C-A 6120964-C-A **
5714847-A-G 5846806-A-G **
5657876-C-A 5789835-C-A **
5576719-C-A 5708678-C-A **
5494622-G-C 5626581-G-C **
5449500-G-T 5581459-G-T **
5449317-A-T 5581276-A-T **
5242690-C-A 5374649-C-A **
10841968-CC-T **
5003711-G-T 5135670-G-T **
3656576-G-T 3788535-G-T **
4999579-C-A 5131538-C-A **
4993659-T-A 5125618-T-A **
4969988-G-T 5101947-G-T **
4647769-G-A 4779728-G-A **
4607415-C-A 4739374-C-A **
4293020-C-A 4424979-C-A **
4138929-G-T 4270888-G-T **
4047355-C-A 4179314-C-A **
4016994-C-G 4148953-C-G **
11658222-C-A **
10980734-C-A **
6233729-C-CAT 6365688-C-CAT IR3_Dst **
10691344-C-CTCCAT **
16990223-CAAAAAAAAA-C 14878343-CAAAAAAAAA-C 24×A**
18130624-C-A 16018744-C-A **
10989501-T-C **
28794225-T-A 26648078-T-A **
28633545-C-A 26487398-C-A **
18847947-C-A 16736067-C-A **
7165306-GTTTT-G 7297265-GTTTT-G 20×T**
15392455-C-A 13280575-C-A **
13488703-G-T 11333027-G-T **
13488118-T-G 11332442-T-G **
10658570-T-G **
10821941-C-G **
10946764-C-A **
24235417-G-TTT 22089270-G-TTT P3_b1 **
9444689-CAA-C 9607080-CAA-C 14×A**
24278329-AG-A 22132182-AG-A P3_b1 **
28804452-C-T 26658305-C-T **
13196452-C-T 11040776-C-T **
17264843-CTTATTA-C 15152963-CTTATTA-C 15×TTA**
22147834-C-A 19985948-C-A **
10744229-T-C **
10671016-C-T **
18966157-A-T 16854277-A-T **
4293449-C-A 4425408-C-A **
10769711-TTTCCA-T **
10934798-G-C **
10934785-A-T **
7152629-C-A 7284588-C-A **
10841166-C-A **
10754921-C-G **
8100637-CAAAAA-C 8232596-CAAAAA-C 37×A**
13932623-C-A 11811917-C-A **
10821855-T-A **
10873055-C-T **
10671017-A-ATTTTC **
10999892-T-A **
10821912-C-A **
11025556-C-T **
19393098-C-CT 17281218-C-CT 30×T**
16676675-C-A 14564795-C-A **
10663437-C-T **
10759801-A-T **
17306573-C-A 15194693-C-A **
10965518-T-G **
10671037-A-ATTTTC **
6010167-C-A 6142126-C-A **
5221043-C-CTT 5353002-C-CTT 14×T**
9442300-C-A 9604691-C-A **
10821662-C-A **
9942319-A-C 10104710-A-C **
9937800-T-G 10100191-T-G **
10772465-C-A **
9540980-G-T 9703371-G-T IR3_Prx **
9504402-G-T 9666793-G-T **
9444873-G-T 9607264-G-T **
6277594-T-A 6409553-T-A IR3_Dst **
9382365-G-A 9544756-G-A **
8901328-T-A 9033287-T-A **
10772459-T-A **
8856846-C-A 8988805-C-A **
10821881-C-G **
10821887-C-T **
8856839-C-G 8988798-C-G **
8850077-C-A 8982036-C-A **
8827418-C-A 8959377-C-A **
10821932-C-A **
10828766-C-T **
9956426-A-G 10118817-A-G **
10032190-C-G 10194581-C-G **
8712855-C-A 8844814-C-A **
10690809-T-G **
10747058-A-T **
10744464-C-T **
10747059-C-T **
10744241-C-CTACTCCATCA **
10690858-T-C **
10690854-T-G **
10747096-G-A **
10690830-G-A **
10682505-T-C **
10658339-A-ATAGCATTCCG **
10665479-C-A **
10760017-T-TACATC **
10763135-C-T **
10664747-CTCCAT-C **
10664714-C-A **
10663417-C-T **
10662631-T-C **
10772455-C-T **
10828771-A-C **
8689388-C-G 8821347-C-G **
10747056-T-G **
6755426-A-G 6887385-A-G **
10836565-A-C **
6998005-C-A 7129964-C-A **
6955255-C-A 7087214-C-A **
6862037-C-A 6993996-C-A **
10841941-T-A **
6827614-G-T 6959573-G-T **
6772386-G-T 6904345-G-T **
6694177-C-A 6826136-C-A **
8080272-G-T 8212231-G-T **
6654848-G-C 6786807-G-C **
6542213-T-A 6674172-T-A **
10841947-TC-T **
6454769-C-A 6586728-C-A **
6428581-C-A 6560540-C-A **
6403895-A-T 6535854-A-T **
6403850-A-T 6535809-A-T **
6403744-G-T 6535703-G-T **
7093718-T-A 7225677-T-A **
7107102-A-T 7239061-A-T **
10836538-C-G **
7613833-GAAAAAAA-G 7745792-GAAAAAAA-G 31×A**
8079151-G-T 8211110-G-T **
8008955-A-G 8140914-A-G **
7939330-C-A 8071289-C-A **
7917005-C-A 8048964-C-A **
10831210-C-A **
7885419-A-C 8017378-A-C **
7641106-C-A 7773065-C-A **
10832853-C-A **
7309203-C-A 7441162-C-A **
7240235-GC-G 7372194-GC-G **
7182031-C-A 7313990-C-A **
7156728-C-A 7288687-C-A **
7152637-A-C 7284596-A-C **
7149102-C-T 7281061-C-T **
10746644-T-C **
17322828-AAG-A 15210948-AAG-A ***
8369376-TTTA-T 8501335-TTTA-T 8×TTA***
23127414-CAAAAA-C 20965528-CAAAAA-C 24×A***
56831001-G-A ***
56833308-TGC-GTC,T ***
27877568-T-C 25731421-T-C P1_Y2 ***
18596061-AACAC-A 16484181-AACAC-A 16×AC***
16340165-AAAAAC-A,AAAAAAC 14228285-AAAAAC-A,AAAAAAC ***
23997004-C-A 21850857-C-A ***
20379934-G-T 18218048-G-T P5_Dst ***
6458241-C-A 6590200-C-A ***
15733879-CAAAAAA-C 13621999-CAAAAAA-C 25×A***
17170472-G-A 15058592-G-A ***
6816486-G-A 6948445-G-A ***
4757361-C-A 4889320-C-A ***
15313371-CTT-C 13201476-CTT-C 11×T***
3965429-C-A 4097388-C-A ***
3831358-C-A 3963317-C-A ***
7166813-C-A 7298772-C-A ***
2907203-C-A 3039162-C-A ***
19057876-C-CAA 16945996-C-CAA 13×A***
19125694-CAA-C,CA 17013814-CAA-C,CA 24×A***
8819284-T-C 8951243-T-C ***
23543299-G-T 21381413-G-T ***
13857494-T-C 11736788-T-C ***
21189668-CAA-C,CAAA 19027782-CAA-C,CAAA 23×A***
21196056-C-A 19034170-C-A ***
13463469-C-A 11307793-C-A ***
13308153-C-A 11152477-C-A ***
9891617-C-A 10054008-C-A Y89483 ***
18923361-G-T 16811481-G-T ***
10658537-C-T ***
15669964-CAAA-C,CAA 13558084-CAAA-C,CAA 18×A***
22617251-C-A 20455365-C-A ***
22920605-CTTTTTTTTTTTT-C,CTTTTTTTTTTT 20758719-CTTTTTTTTTTTT-C,CTTTTTTTTTTT 25×T***
23482906-AAAA-A,AAAAAAG 21321020-AAAA-A,AAAAAAG ***
56843711-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B189437944825977662167679196
Used in age calculations944825977662167679196
Counts of SNPs1312
Variant counts last updated 2019-07-19 21:29:48.



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