Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z367/S255 > Z34/S368 > Z33/S212 > b38:24139911C>G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
179798
20671287-C-T 18509401-C-T P4_Prx A*
19877794-A-G 17765914-A-G P5_Prx A*
18353122-A-G 16241242-A-G P6_Prx A*
18312780-A-G 16200900-A-G P6_Prx A*
9045369-CT-C 9207760-CT-C +
8469694-C-T 8601653-C-T BY73095 YY+
18872972-T-C 16761092-T-C BY124431 YY+
19010275-G-A 16898395-G-A BY125520 YY+
8555672-T-G 8687631-T-G BY73988 YY+
8152700-T-C 8284659-T-C BY70342 YY+
8335537-C-T 8467496-C-T BY71773 YY+
18701068-AT-A 16589188-AT-A 9×T+
8104150-A-T 8236109-A-T BY69973 YY+
19087854-T-A 16975974-T-A BY126131 YY+
7638620-T-A 7770579-T-A BY66437 YY+
6650151-G-C 6782110-G-C BY60512 YY+
21440549-G-C 19278663-G-C BY132935 YY+
9045301-T-A 9207692-T-A BY77648 Y+
9448508-G-A 9610899-G-A BY79468 YY+
9101264-GTGTC-G 9263655-GTGTC-G +
23369595-A-G 21207709-A-G BY144855 YY+
9494800-C-T 9657191-C-T BY79906 +
9500437-T-C 9662828-T-C BY79959 +
17756403-T-C 15644523-T-C BY117176 YY+
17551491-T-C 15439611-T-C BY115649 YY+
17418421-T-C 15306541-T-C BY114638 YY+
17283078-A-G 15171198-A-G BY113464 YY+
17043843-T-C 14931963-T-C BY111958 YY+
16604419-G-C 14492539-G-C BY108937 YY+
15939132-C-T 13827252-C-T BY105011 YY+
14849433-G-C 12737499-G-C BY97983 YY+
14838944-T-C 12727011-T-C BY97913 YY+
14028628-C-T 11907922-C-T BY92442 YY+
14008933-G-A 11888227-G-A BY92301 YY+
22470328-C-T 20308442-C-T DYZ19 +
9045314-T-G 9207705-T-G BY77649 Y+
9045383-G-A 9207774-G-A Y64760 Y+
22550954-G-A 20389068-G-A PH5124 YY+
28555736-C-T 26409589-C-T BY150675 +
28653649-A-C 26507502-A-C BY150843 +
22318164-C-T 20156278-C-T DYZ19 *
22432409-T-C 20270523-T-C DYZ19 *
22302292-G-C 20140406-G-C DYZ19 *
23820646-C-A 21658760-C-A Y*
14743726-C-A 12631795-C-A **
15626565-T-C 13514685-T-C **
15995575-C-A 13883695-C-A **
56823340-G-T **
15763969-G-A 13652089-G-A **
15698765-C-A 13586885-C-A **
15682787-T-G 13570907-T-G **
15653484-T-C 13541604-T-C **
14620939-T-G 12509137-T-G **
15497972-A-ATT 13386092-A-ATT 26×T**
56850332-C-T **
14682313-G-T 12570379-G-T **
15475154-C-A 13363274-C-A **
16041323-T-C 13929443-T-C BZ444 **
15380529-C-A 13268649-C-A **
14698486-AAC-A 12586552-AAC-A **
15286687-G-T 13174786-G-T **
15276483-C-A 13164572-C-A **
15218823-G-T 13106909-G-T **
15395241-CT-C 13283361-CT-C **
16277789-C-A 14165909-C-A **
16091057-A-G 13979177-A-G **
16998040-T-A 14886160-T-A **
17376796-C-G 15264916-C-G **
17376737-G-T 15264857-G-T **
17374253-G-T 15262373-G-T **
17372365-A-C 15260485-A-C **
28798232-G-T 26652085-G-T **
17231239-C-A 15119359-C-A **
17064815-C-T 14952935-C-T FGC9171 **
28818093-A-T 26671946-A-T **
16678581-A-C 14566701-A-C **
16102034-T-G 13990154-T-G P8_Prx **
16624671-T-C 14512791-T-C **
16624006-C-G 14512126-C-G **
16515923-T-A 14404043-T-A **
16490490-C-A 14378610-C-A **
16470311-G-T 14358431-G-T **
16464914-G-T 14353034-G-T **
16428302-C-A 14316422-C-A **
16354903-G-T 14243023-G-T **
14531350-T-A 12419551-T-A **
14560603-T-C 12448804-T-C **
14511871-A-T 12400076-A-T **
14518632-C-A 12406833-C-A **
13255380-C-A 11099704-C-A **
13698833-G-A 11543157-G-A **
13698810-A-T 11543134-A-T **
13698782-CG-C 11543106-CG-C **
13578573-C-A 11422897-C-A **
13372626-C-A 11216950-C-A **
13372604-C-A 11216928-C-A **
13371693-C-A 11216017-C-A **
13360806-C-A 11205130-C-A **
13294181-C-A 11138505-C-A **
13222006-G-GA 11066330-G-GA **
11648954-C-A **
13222001-GC-G 11066325-GC-G **
11036170-C-G **
11034454-C-A **
11032940-C-A **
11025952-G-T **
11025919-A-C **
11023222-A-T **
11023218-C-T **
11023203-CTCCAG-C **
11646942-A-T **
11654181-A-G **
28793803-G-A 26647656-G-A **
14114356-T-A 11993650-T-A **
14456063-G-A 12335336-G-A **
14420366-A-C 12299641-A-C **
14373640-C-A 12252936-C-A **
14328166-A-G 12207460-A-G **
14297028-C-A 12176322-C-A **
14183268-C-A 12062562-C-A **
14154530-G-T 12033824-G-T **
14136093-A-T 12015387-A-T **
14135918-G-A 12015212-G-A **
56850333-T-G **
11663864-G-T **
14017472-A-T 11896766-A-T **
56873073-C-T **
13934064-C-A 11813358-C-A **
13932293-T-A 11811587-T-A **
13921677-C-A 11800971-C-A **
13874079-A-C 11753373-A-C **
13860698-CG-C 11739992-CG-C **
13857383-A-G 11736677-A-G **
13856542-T-A 11735836-T-A **
13809348-G-C 11688642-G-C **
17377596-G-T 15265716-G-T **
24241225-A-T 22095078-A-T P3_b1 **
17501834-C-A 15389954-C-A **
20694569-T-A 18532683-T-A P4_Prx **
21949027-A-G 19787141-A-G **
21920605-C-A 19758719-C-A **
21464420-C-A 19302534-C-A **
21455875-C-T 19293989-C-T **
25872053-G-T 23725906-G-T P1_Y1 **
21427521-C-A 19265635-C-A **
21000922-T-C 18839036-T-C P4_Dst **
21000917-A-AT 18839031-A-AT P4_Dst **
20801525-A-T 18639639-A-T P4_Prx **
20694551-T-A 18532665-T-A P4_Prx **
22311175-C-T 20149289-C-T DYZ19 **
20694500-T-A 18532614-T-A P4_Prx **
25937260-T-C 23791113-T-C P1_Y1 **
20432859-G-T 18270973-G-T P5_Dst **
20432851-C-A 18270965-C-A P5_Dst **
20432804-G-T 18270918-G-T P5_Dst **
20392094-G-A 18230208-G-A P5_Dst **
19903988-A-C 17792108-A-C P5_Prx **
19903942-T-G 17792062-T-G P5_Prx **
19903937-A-C 17792057-A-C P5_Prx **
22240976-C-A 20079090-C-A DYZ19 **
22311194-C-A 20149308-C-A DYZ19 **
19892883-T-TA 17781003-T-TA P5_Prx **
22884945-A-AT 20723059-A-AT 9×T**
23742319-C-G 21580433-C-G **
23425381-AAAC-A 21263495-AAAC-A **
24406289-G-T 22260142-G-T **
23305925-C-A 21144039-C-A **
23111690-T-G 20949804-T-G **
23065588-C-A 20903702-C-A **
23039299-C-A 20877413-C-A **
23029573-G-T 20867687-G-T **
22963527-C-A 20801641-C-A **
22873075-C-A 20711189-C-A **
22311233-T-G 20149347-T-G DYZ19 **
22872903-T-G 20711017-T-G **
22855981-A-G 20694095-A-G **
22816363-TCTCAAAA-T 20654477-TCTCAAAA-T **
22787117-C-A 20625231-C-A **
22779919-C-A 20618033-C-A **
22506372-C-A 20344486-C-A DYZ19 **
22490511-C-A 20328625-C-A DYZ19 **
24485750-A-AT 22339603-A-AT **
22447710-T-C 20285824-T-C DYZ19 **
19892886-T-TA 17781006-T-TA P5_Prx **
25937277-G-T 23791130-G-T P1_Y1 **
17505566-A-T 15393686-A-T **
18328904-A-T 16217024-A-T P6_Prx **
18728738-C-CAG 16616858-C-CAG 10×AG**
28531256-C-A 26385109-C-A **
11022268-T-C **
28532710-T-G 26386563-T-G **
18565908-C-A 16454028-C-A **
28597319-C-T 26451172-C-T **
28597357-A-T 26451210-A-T **
28641139-A-C 26494992-A-C **
28642788-C-CCT 26496641-C-CCT 8×CT**
18263856-C-CAA 16151976-C-CAA 26×A**
18873996-A-T 16762116-A-T **
18192117-G-T 16080237-G-T **
17997467-C-A 15885587-C-A P7_Gap **
17944912-C-A 15833032-C-A **
17929244-G-T 15817364-G-T **
28760156-C-A 26614009-C-A **
17724389-A-C 15612509-A-C **
17722519-C-A 15610639-C-A **
23997415-G-T 21851268-G-T **
28762010-C-A 26615863-C-A **
28531247-T-TGAGGC 26385100-T-TGAGGC **
18990289-C-T 16878409-C-T **
26161186-C-A 24015039-C-A P1_Y1 **
19310908-T-G 17199028-T-G **
19775404-C-A 17663524-C-A P5_Prx **
19768573-T-A 17656693-T-A P5_Prx **
19768548-G-T 17656668-G-T P5_Prx **
19768493-T-A 17656613-T-A P5_Prx **
19732386-C-A 17620506-C-A P5_Prx **
19438446-G-GAAGAAAGAAAGAAAGAAAGA 17326566-G-GAAGAAAGAAAGAAAGAAAGA 15×AAGA**
19424259-A-T 17312379-A-T **
19423942-G-T 17312062-G-T **
19418454-G-C 17306574-G-C **
19297404-T-G 17185524-T-G **
28460811-C-A 26314664-C-A **
26454648-T-A 24308501-T-A P1_Y1 **
19088537-G-A 16976657-G-A **
26454664-T-A 24308517-T-A P1_Y1 **
26454667-T-A 24308520-T-A P1_Y1 **
27966861-A-ATTG 25820714-A-ATTG P1_Y2 **
19043410-A-T 16931530-A-T **
19043400-A-T 16931520-A-T **
28016475-C-A 25870328-C-A P1_Y2 **
28245730-G-T 26099583-G-T P1_b4 **
28245733-A-T 26099586-A-T P1_b4 **
17618790-G-T 15506910-G-T **
11010978-G-A **
11019903-C-A **
5442126-G-T 5574085-G-T **
6404976-A-G 6536935-A-G **
6374245-C-G 6506204-C-G **
6311980-C-A 6443939-C-A IR3_Dst **
5980889-C-A 6112848-C-A **
5953620-G-T 6085579-G-T **
5865441-T-G 5997400-T-G **
5693720-T-G 5825679-T-G **
5609671-CA-C 5741630-CA-C **
5576724-C-G 5708683-C-G **
5519905-TAA-T 5651864-TAA-T 13×A**
5317635-G-T 5449594-G-T **
6663364-G-A 6795323-G-A **
5266988-C-A 5398947-C-A **
5260014-C-A 5391973-C-A **
5243573-A-T 5375532-A-T **
5159543-C-A 5291502-C-A **
5130921-G-T 5262880-G-T **
5127075-C-A 5259034-C-A **
5013382-G-T 5145341-G-T **
4958275-T-A 5090234-T-A **
4947815-C-A 5079774-C-A **
4837110-G-T 4969069-G-T **
4756501-C-A 4888460-C-A **
6405033-C-A 6536992-C-A **
6926669-C-T 7058628-C-T **
4558637-T-A 4690596-T-A **
8273824-C-A 8405783-C-A **
9991384-T-G 10153775-T-G **
9973514-G-A 10135905-G-A **
9927343-A-C 10089734-A-C **
11009071-C-G **
9513364-C-A 9675755-C-A **
9376648-G-A 9539039-G-A **
9075982-A-T 9238373-A-T **
9109401-G-T **
8850477-C-A 8982436-C-A **
8733038-A-C 8864997-A-C **
8720507-C-A 8852466-C-A **
8217732-C-A 8349691-C-A **
7028022-C-A 7159981-C-A **
7991353-C-A 8123312-C-A **
7645286-T-C 7777245-T-C **
7501416-A-G 7633375-A-G IR1_L **
7379046-G-A 7511005-G-A **
7224085-C-A 7356044-C-A **
7183942-C-A 7315901-C-A **
7160883-C-A 7292842-C-A **
7148259-C-A 7280218-C-A **
7123581-C-A 7255540-C-A **
7107397-G-T 7239356-G-T **
7041697-C-T 7173656-C-T **
4661947-C-A 4793906-C-A **
4509482-A-C 4641441-A-C **
10655084-C-G **
7081063-C-A 7213022-C-A **
10936224-C-T **
10936198-GTTCCATTCCT-G **
28815158-G-A 26669011-G-A **
16428241-C-A 14316361-C-A **
10929391-G-T **
27936779-AG-A 25790632-AG-A P1_Y2 **
17222673-C-A 15110793-C-A **
3550568-ACAACT-A 3682527-ACAACT-A **
11649376-T-A **
10831641-C-A **
13705510-G-T 11549834-G-T **
2684568-T-G 2816527-T-G **
4932071-G-T 5064030-G-T **
6634259-GTTTT-G 6766218-GTTTT-G 15×T**
10653916-TTCAAC-T **
6648655-C-A 6780614-C-A **
16938213-C-A 14826333-C-A **
10687705-C-A **
13267431-CAAAA-C 11111755-CAAAA-C 16×A**
22311184-G-T 20149298-G-T DYZ19 **
28432598-G-T 26286451-G-T P1_gr2 **
4162955-C-A 4294914-C-A Z26245 **
25964895-G-GTTTT 23818748-G-GTTTT P1_Y1 23×T**
13486650-G-A 11330974-G-A **
2758643-T-A 2890602-T-A **
4459297-G-T 4591256-G-T **
3876138-G-T 4008097-G-T **
4446496-G-A 4578455-G-A **
4387826-C-A 4519785-C-A **
4342865-G-T 4474824-G-T **
4311387-C-A 4443346-C-A **
4208329-C-A 4340288-C-A **
4080794-A-C 4212753-A-C **
4080793-A-C 4212752-A-C **
4071820-C-A 4203779-C-A **
4056911-T-C 4188870-T-C **
4026731-G-T 4158690-G-T **
4002366-C-A 4134325-C-A **
3815273-G-T 3947232-G-T **
2929678-C-A 3061637-C-A **
3804472-C-A 3936431-C-A **
3703600-G-T 3835559-G-T **
3630900-T-A 3762859-T-A **
3611678-G-T 3743637-G-T **
3340656-C-A 3472615-C-A **
3323858-C-A 3455817-C-A **
3268134-C-A 3400093-C-A **
3206989-C-A 3338948-C-A **
3171227-CATT-C 3303186-CATT-C **
3076005-G-T 3207964-G-T **
2975577-C-A 3107536-C-A **
10003485-C-A 10165876-C-A **
9765888-T-A 9928279-T-A **
10655381-G-T **
10900609-C-A **
10918013-A-G **
10917047-GT-G **
10917045-A-G **
10917027-C-G **
10917020-A-T **
10916481-T-A **
10914713-G-T **
10914678-A-G **
10906141-G-A **
10902281-C-A **
10900519-C-A **
10924335-T-TTCA **
10898374-T-ACTCCA **
10895956-C-A **
10893395-T-G **
10890121-C-A **
10657251-A-C **
10877860-T-A **
10868017-T-A **
10863171-C-T **
10860589-T-C **
10852624-C-A **
10924302-C-T **
10924342-T-TCC **
10842959-CTA-C **
10983985-C-T **
11008601-C-A **
11007425-C-A **
11006053-G-A **
11006043-G-A **
11006037-G-C **
11006031-A-C **
11006011-C-G **
10994157-C-T **
10987604-T-A **
10983995-C-T **
10980517-T-A **
10927259-A-T **
10978167-C-A **
10971246-A-T **
10963881-A-G **
10963150-C-G **
10956639-A-T **
10944761-C-A **
10936252-C-A **
10935614-T-G **
10935244-C-A **
10931403-C-A **
10930608-ATCCAC-A **
10842986-A-G **
10889029-A-T **
10842934-CTACTCCTCTG-C **
10689109-A-G **
10759678-C-A **
10757429-G-T **
10756918-T-C **
10755129-G-T **
10842930-C-A **
10745951-G-T **
10745812-G-T **
10690498-T-A **
10689457-T-C **
10688276-C-T **
10769817-C-A **
10688234-C-G **
10687476-T-C **
10683527-C-A **
10668468-C-A **
10666412-C-A **
10666315-C-A **
10664374-T-G **
10664173-T-A **
10660103-C-A **
10658395-C-A **
10761639-A-T **
10753265-C-T **
10770198-C-A **
10802696-T-A **
10842909-CA-C **
10842905-C-CA **
10840564-C-A **
10832215-C-A **
10824168-A-AC **
10807002-GC-G **
10806996-C-T **
10806981-A-C **
10803086-C-G **
10802701-G-A **
7819-A-C **
10786200-T-A **
10794248-C-A **
10787758-C-G **
10789850-C-CCCATT **
10794227-T-A **
18838723-T-C 16726843-T-C ***
13974693-CTT-C,CT 11853987-CTT-C,CT 17×T***
10661716-T-C ***
56685625-G-T ***
9519810-CTTTT-C 9682201-CTTTT-C ***
15477291-C-CAAAA 13365411-C-CAAAA 18×A***
10987835-A-G ***
8987994-G-T 9150385-G-T ***
18733539-A-G 16621659-A-G ***
13803925-C-G 11683219-C-G ***
13803923-A-G 11683217-A-G ***
10924373-A-T ***
10912430-C-A ***
4473173-G-T 4605132-G-T ***
14195174-C-A 12074468-C-A ***
13810872-TAGATT-C 11690166-TAGATT-C ***
3965648-C-A 4097607-C-A ***
10938007-C-T ***
19073873-C-T 16961993-C-T ***
11649395-G-A ***
6346161-C-A 6478120-C-A ***
10999906-T-C ***
13803921-G-T 11683215-G-T ***
18857575-CT-C,CTT 16745695-CT-C,CTT 15×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 179798997084581161677981261
Used in age calculations997084581161677981261
Counts of SNPs2529
Variant counts last updated 2018-06-06 21:24:07.



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