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R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > DF106 > DF104 > DF105 > A259 > Y19870 > ~24931622-G-A > A10525

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B90611
20638238-A-C 18476352-A-C P4_Prx A*
6335208-C-CA 6467167-C-CA IR3_Dst 17×AA*
20040463-T-TCAGGCAAG 17928583-T-TCAGGCAAG P5_Prx A*
5317968-T-C 5449927-T-C +
19360228-C-T 17248348-C-T YY+
24440217-G-A 22294070-G-A Y+
8888461-T-C 9020420-T-C Y+
16968666-G-A 14856786-G-A Y97829 YY+
6739255-C-T 6871214-C-T YY+
14207056-T-G 12086350-T-G YY+
22312581-G-T 20150695-G-T DYZ19 *
22302962-G-C 20141076-G-C DYZ19 *
22255339-G-A 20093453-G-A DYZ19 *
17805523-A-AGT 15693643-A-AGT 11×GT*
15084429-C-CA 12972519-C-CA 13×A**
15400167-C-CAAA 13288287-C-CAAA 14×A**
15392410-G-T 13280530-G-T **
13951435-G-T 11830729-G-T **
15392397-T-A 13280517-T-A **
14036141-C-A 11915435-C-A **
15302605-T-G 13190704-T-G **
15113579-T-G 13001666-T-G **
15092570-A-G 12980659-A-G **
15084554-C-A 12972644-C-A **
15084447-C-A 12972537-C-A **
14992687-C-A 12880772-C-A **
14224277-C-A 12103571-C-A **
14286042-AT-A 12165336-AT-A **
14964994-A-T 12853069-A-T **
14741530-C-A 12629598-C-A Y92078 **
14568077-C-A 12456277-C-A **
15608171-A-G 13496291-A-G **
14530757-T-C 12418958-T-C **
14505331-C-A 12393536-C-A **
14488373-C-A 12367642-C-A **
14448148-A-C 12327421-A-C **
14358192-C-A 12237487-C-A **
14354429-C-A 12233724-C-A **
14328149-T-A 12207443-T-A **
15533083-C-A 13421203-C-A **
15926791-C-A 13814911-C-A **
15745808-C-A 13633928-C-A **
16865304-A-C 14753424-A-C **
16379283-T-A 14267403-T-A **
16424781-C-A 14312901-C-A **
16645610-T-A 14533730-T-A **
16702727-C-A 14590847-C-A **
16705604-T-A 14593724-T-A **
16865299-A-G 14753419-A-G **
16865309-G-A 14753429-G-A **
16279316-C-A 14167436-C-A **
16938227-T-A 14826347-T-A **
16952820-A-C 14840940-A-C **
16952927-C-A 14841047-C-A **
17018718-T-A 14906838-T-A **
17030884-C-T 14919004-C-T **
17188313-A-T 15076433-A-T **
17224337-C-A 15112457-C-A **
16284233-C-A 14172353-C-A **
16265977-C-A 14154097-C-A **
15842795-A-T 13730915-A-T **
16052226-C-A 13940346-C-A **
13928762-T-G 11808056-T-G **
15932169-G-T 13820289-G-T **
16001476-T-A 13889596-T-A **
16008128-T-A 13896248-T-A **
16044250-C-A 13932370-C-A **
16046329-T-G 13934449-T-G **
16060578-G-A 13948698-G-A **
16181306-T-A 14069426-T-A **
16084089-T-C 13972209-T-C **
16091087-C-A 13979207-C-A **
16118570-ATTTT-A 14006690-ATTTT-A P8_Prx 31×T**
16118603-T-G 14006723-T-G P8_Prx **
16148135-A-T 14036255-A-T P8_Dst **
16148173-C-A 14036293-C-A P8_Dst **
16148178-C-A 14036298-C-A P8_Dst **
13936205-G-GAATA 11815499-G-GAATA 14×AAGA**
28597843-C-CT 26451696-C-CT 15×T**
13809566-A-G 11688860-A-G **
10958796-C-A **
10935961-T-G **
10943343-T-G **
10943862-C-A **
10945458-T-G **
10954572-A-T **
10956198-T-A **
10971657-C-A **
10930654-T-C **
10971974-C-CTAAAA **
10973654-T-C **
10974938-A-C **
10976865-C-A **
10977958-C-A **
10980419-A-T **
10932934-C-CCAAAA **
10926475-A-C **
10990814-A-G **
10892007-A-T **
10887569-CCACTT-C **
10887586-A-T **
2688620-A-T 2820579-A-T **
10887598-G-T **
10888214-C-A **
10889892-T-G **
10900173-C-A **
10913775-C-T **
10903025-T-C **
10903027-T-A **
10903044-CT-C **
10903059-AT-A **
10909366-G-T **
10913750-G-T **
10984007-T-G **
10990844-T-C **
13809549-G-GAAAGT 11688843-G-GAAAGT **
13249493-C-A 11093817-C-A **
13217534-C-A 11061858-C-A **
13223499-AAG-A 11067823-AAG-A **
13223521-G-A 11067845-G-A **
13223534-T-C 11067858-T-C **
13223552-G-A 11067876-G-A **
13223556-G-T 11067880-G-T **
13282224-C-A 11126548-C-A **
11032778-C-A **
13495270-A-G 11339594-A-G **
13498517-C-A 11342841-C-A **
13567780-C-A 11412104-C-A **
17318212-G-A 15206332-G-A **
11650719-C-A **
11669385-G-T **
13200548-C-A 11044872-C-A **
11028182-T-A **
10990847-A-C **
11007617-G-GAT **
10990854-T-G **
10990855-T-A **
10993299-A-T **
10994133-TC-T **
10994137-T-TC **
10997596-C-CCGCTG **
11007629-T-C **
11026299-A-C **
11011369-T-G **
11012488-C-A **
11012497-C-A **
11020355-C-A **
11022269-T-G **
11026082-C-G **
11026292-T-G **
11644150-A-T **
17605076-C-G 15493196-C-G **
17318227-G-T 15206347-G-T **
24210533-G-T 22064386-G-T P3_b1 **
26099740-G-T 23953593-G-T P1_Y1 **
25246425-T-G 23100278-T-G P2_r1 **
25246416-C-A 23100269-C-A P2_r1 **
24878431-T-G 22732284-T-G g1 **
24535555-A-T 22389408-A-T P3_t2 **
24535540-T-G 22389393-T-G P3_t2 **
24485746-T-C 22339599-T-C **
24389932-T-G 22243785-T-G **
24389928-A-T 22243781-A-T **
24389922-A-T 22243775-A-T **
24381442-A-C 22235295-A-C **
24363784-C-A 22217637-C-A **
24281025-C-A 22134878-C-A P3_t1 **
24210550-G-T 22064403-G-T P3_b1 **
24052544-C-A 21906397-C-A P3_b1 **
26124462-A-T 23978315-A-T P1_Y1 **
22782976-C-A 20621090-C-A **
21602793-T-G 19440907-T-G **
21807041-C-A 19645155-C-A **
21836596-T-A 19674710-T-A **
22167224-CAAA-C 20005338-CAAA-C 29×A**
22615305-T-A 20453419-T-A **
22703595-CAAAA-C 20541709-CAAAA-C 30×A**
22949911-T-A 20788025-T-A **
23831315-C-T 21669429-C-T **
22963330-A-C 20801444-A-C **
23065303-A-G 20903417-A-G **
23065304-C-A 20903418-C-A **
23350615-C-A 21188729-C-A **
23609309-C-A 21447423-C-A **
23654830-G-T 21492944-G-T **
26113895-G-T 23967748-G-T P1_Y1 **
26124467-A-T 23978320-A-T P1_Y1 **
21246803-G-T 19084917-G-T **
28774459-C-A 26628312-C-A **
28653191-C-T 26507044-C-T **
28653192-C-G 26507045-C-G **
28653194-C-T 26507047-C-T **
28653203-TA-T 26507056-TA-T **
28700600-T-C 26554453-T-C **
28722255-G-A 26576108-G-A **
56728073-C-A **
28645160-C-A 26499013-C-A **
56728089-A-G **
56728103-G-A **
56728116-TG-T **
56841977-A-T **
56842225-C-A **
56848727-C-A **
28653178-T-C 26507031-T-C **
28635157-C-A 26489010-C-A **
26225754-T-G 24079607-T-G P1_Y1 **
28004691-C-A 25858544-C-A P1_Y2 **
26740555-T-C 24594408-T-C P1_g2 **
27829093-C-A 25682946-C-A P1_Y2 **
28004649-C-A 25858502-C-A P1_Y2 **
28004662-T-A 25858515-T-A P1_Y2 **
28004675-G-T 25858528-G-T P1_Y2 **
28004688-T-A 25858541-T-A P1_Y2 **
28004692-C-A 25858545-C-A P1_Y2 **
28605225-G-GA 26459078-G-GA 10×A**
28004700-T-A 25858553-T-A P1_Y2 **
28004701-T-A 25858554-T-A P1_Y2 **
28534334-A-T 26388187-A-T **
28534643-G-T 26388496-G-T **
28549273-A-T 26403126-A-T **
28549278-C-A 26403131-C-A **
21491068-A-C 19329182-A-C **
21182439-C-A 19020553-C-A **
17371009-A-C 15259129-A-C **
18930005-C-A 16818125-C-A **
18244540-A-T 16132660-A-T **
18343599-CTG-C 16231719-CTG-C P6_Prx **
18390068-T-A 16278188-T-A P6_Gap **
18792559-T-G 16680679-T-G **
18792688-C-A 16680808-C-A **
18825574-A-T 16713694-A-T **
18930119-A-C 16818239-A-C **
18242842-A-T 16130962-A-T **
19042608-A-T 16930728-A-T **
19073760-G-T 16961880-G-T **
19228810-A-T 17116930-A-T **
19235214-G-C 17123334-G-C **
19246803-T-G 17134923-T-G **
19302334-C-A 17190454-C-A **
18242868-G-T 16130988-G-T **
18242839-A-T 16130959-A-T **
19418352-C-A 17306472-C-A **
17666960-C-A 15555080-C-A **
17372147-C-A 15260267-C-A **
17375719-G-T 15263839-G-T **
17537928-T-A 15426048-T-A **
10884494-ATCCAC-A **
17642762-C-A 15530882-C-A **
17654967-A-C 15543087-A-C **
17722892-C-A 15611012-C-A **
18242832-A-T 16130952-A-T **
17822885-A-T 15711005-A-T **
17923563-C-A 15811683-C-A **
18088306-C-A 15976426-C-A **
18108630-C-A 15996750-C-A **
18127697-C-A 16015817-C-A **
18174609-T-C 16062729-T-C **
19318173-A-T 17206293-A-T **
19464037-G-T 17352157-G-T **
21042123-T-C 18880237-T-C **
20441974-A-T 18280088-A-T P5_Dst **
19935985-G-T 17824105-G-T P5_Prx **
19963812-G-A 17851932-G-A P5_Prx **
20089284-C-A 17977404-C-A P5_Dst **
20089297-T-C 17977417-T-C P5_Dst **
20352387-G-A 18190501-G-A P5_Dst **
20441955-A-T 18280069-A-T P5_Dst **
20441992-A-T 18280106-A-T P5_Dst **
19877389-A-T 17765509-A-T P5_Prx **
20442009-A-T 18280123-A-T P5_Dst **
20459013-G-T 18297127-G-T P5_Dst **
20500868-C-A 18338982-C-A P5_Dst **
20579290-T-TACAC 18417404-T-TACAC P5_Dst **
20579349-C-A 18417463-C-A P5_Dst **
20802957-C-A 18641071-C-A P4_Gap **
19882581-T-C 17770701-T-C P5_Prx **
19795032-C-A 17683152-C-A P5_Prx **
19512015-C-A 17400135-C-A **
19744943-A-T 17633063-A-T P5_Prx **
19622199-C-A 17510319-C-A P5_Prx **
19697889-A-T 17586009-A-T P5_Prx **
19697894-A-T 17586014-A-T P5_Prx **
19697931-A-T 17586051-A-T P5_Prx **
19697934-A-T 17586054-A-T P5_Prx **
19697952-G-T 17586072-G-T P5_Prx **
19746879-G-T 17634999-G-T P5_Prx **
19793688-TTTTTTCCTGG-T 17681808-TTTTTTCCTGG-T P5_Prx **
19746885-G-T 17635005-G-T P5_Prx **
19788345-A-T 17676465-A-T P5_Prx **
19788347-C-A 17676467-C-A P5_Prx **
19788356-C-G 17676476-C-G P5_Prx **
19788373-C-A 17676493-C-A P5_Prx **
19788391-G-T 17676511-G-T P5_Prx **
10887564-C-G **
10887593-T-G **
10881967-CTCTGG-C **
2806229-TTTAG-T 2938188-TTTAG-T **
3814485-C-A 3946444-C-A **
3791128-T-G 3923087-T-G **
3759403-G-T 3891362-G-T **
3625952-G-A 3757911-G-A **
3625905-C-A 3757864-C-A **
3550598-A-AAAC 3682557-A-AAAC **
3286713-C-A 3418672-C-A **
3273047-A-G 3405006-A-G **
3260214-G-T 3392173-G-T **
3191074-T-C 3323033-T-C **
3075016-T-A 3206975-T-A **
2921239-T-G 3053198-T-G **
2845231-A-AC 2977190-A-AC **
2839896-G-T 2971855-G-T **
2792944-A-G 2924903-A-G **
3882230-C-A 4014189-C-A **
26421480-GT-G 24275333-GT-G P1_Y1 **
19318170-A-T 17206290-A-T **
7081776-C-A 7213735-C-A **
10927022-T-A **
11011463-C-A **
22587978-C-A 20426092-C-A **
10787153-T-G **
15986617-CTT-C 13874737-CTT-C 12×T**
9231746-T-A 9394137-T-A **
10924290-T-A **
11663077-G-T **
11011400-G-T **
10656835-A-AT **
4527927-C-A 4659886-C-A **
3814602-C-A 3946561-C-A **
3947125-C-A 4079084-C-A **
10820801-C-T **
4875365-A-G 5007324-A-G **
5605405-G-T 5737364-G-T **
5420531-C-A 5552490-C-A **
5367734-T-C 5499693-T-C **
5318286-A-C 5450245-A-C **
5185268-C-A 5317227-C-A **
5171324-C-A 5303283-C-A **
5108275-G-T 5240234-G-T **
5075590-G-T 5207549-G-T **
5073366-A-T 5205325-A-T **
4958423-A-C 5090382-A-C **
4937009-A-C 5068968-A-C **
10876719-T-A **
4919331-G-T 5051290-G-T **
4888494-A-G 5020453-A-G **
4711575-A-C 4843534-A-C **
3950834-C-A 4082793-C-A **
4695341-T-A 4827300-T-A **
4554498-A-C 4686457-A-C **
4540607-TTGTTACTCAAATTGGTTTTTAAA-T 4672566-TTGTTACTCAAATTGGTTTTTAAA-T **
4473704-A-C 4605663-A-C **
4439303-C-A 4571262-C-A **
4437826-A-T 4569785-A-T **
4389450-G-A 4521409-G-A **
4378826-G-T 4510785-G-T **
4374870-C-A 4506829-C-A **
4286355-C-A 4418314-C-A **
4275372-A-C 4407331-A-C **
4168812-G-T 4300771-G-T **
4083132-T-C 4215091-T-C **
4080837-A-C 4212796-A-C **
10820835-T-A **
10804840-CTTTAA-C **
5858405-C-A 5990364-C-A **
2986153-C-T 3118112-C-T **
10868388-C-T **
10868374-AAATGC-A **
10868361-G-C **
10868353-G-C **
10868349-C-T **
10868346-T-C **
10787128-T-G **
22189234-CAAA-C 20027348-CAAA-C 17×A**
10926483-T-C **
10887370-T-C **
10887361-T-A **
10887360-T-C **
28530679-GA-G 26384532-GA-G 10×A**
25246421-T-A 23100274-T-A P2_r1 **
27963547-ACT-A 25817400-ACT-A P1_Y2 8×CT**
28818157-T-C 26672010-T-C **
21880884-G-A 19718998-G-A **
7093634-C-A 7225593-C-A **
13223538-A-G 11067862-A-G **
13223497-A-G 11067821-A-G **
14719578-TAAAAA-T 12607646-TAAAAA-T 19×A**
5260410-C-CA 5392369-C-CA 20×A**
20089276-A-C 17977396-A-C P5_Dst **
13579531-C-CAA 11423855-C-CAA 23×A**
6093042-T-C 6225001-T-C ZS7959 **
5991071-T-C 6123030-T-C **
13223520-A-G 11067844-A-G **
13223494-G-A 11067818-G-A **
13223545-A-G 11067869-A-G **
7235831-GT-G 7367790-GT-G 29×T**
10868400-A-ACTCAATTCCT **
10927045-G-C **
16860771-AAAG-A 14748891-AAAG-A **
10804837-T-C **
10796679-T-G **
10796654-T-A **
26379150-C-A 24233003-C-A P1_Y1 **
28818131-A-T 26671984-A-T **
10826819-C-A **
10841999-C-A **
14097941-A-C 11977235-A-C **
7430568-C-A 7562527-C-A **
3093790-G-C 3225749-G-C **
10832403-T-C **
10832392-T-A **
10832391-C-G **
10832368-C-G **
28818130-C-T 26671983-C-T **
10804832-T-C **
10927050-C-CTCTTTTCAAG **
20352409-G-T 18190523-G-T P5_Dst **
28698695-C-A 26552548-C-A **
7109458-C-A 7241417-C-A **
10794278-CCACTT-C **
25395751-G-T 23249604-G-T P2_r2 **
10796663-A-G **
3800092-A-AAC 3932051-A-AAC 17×AC**
16048328-C-A 13936448-C-A **
10804810-C-CA **
10673443-T-A **
3229154-CAAA-C 3361113-CAAA-C 20×A**
9511393-G-T 9673784-G-T **
10981574-G-T **
18758972-C-A 16647092-C-A **
16868746-CATATATAT-C 14756866-CATATATAT-C 22×AT**
5828794-C-A 5960753-C-A **
4930574-GA-G 5062533-GA-G **
6105973-T-A 6237932-T-A **
10770137-A-T **
10792915-C-G **
10792535-C-A **
10792429-T-G **
10789706-C-A **
10787141-T-C **
10784783-T-C **
10781991-T-G **
10779018-C-A **
10779005-C-A **
10778995-C-G **
10778993-C-T **
10777452-T-C **
10774332-T-G **
10769005-T-A **
10794301-T-G **
10759196-C-A **
10759190-C-A **
10759188-C-CCAT **
6289427-C-CATTCATCT 6421386-C-CATTCATCT IR3_Dst **
10759182-ATTT-A **
10757062-T-G **
10750851-C-A **
10689175-A-T **
10682716-T-C **
10673454-C-T **
10673452-G-C **
10673444-T-C **
10673437-A-C **
10673425-C-T **
10793671-C-A **
10796656-C-A **
10659147-C-A **
10839764-TTCCAC-T **
10876586-C-A **
10867253-A-T **
10867248-A-T **
10866441-C-A **
10863051-C-A **
10860011-A-T **
10850193-C-A **
10849713-T-C **
10846184-T-C **
10845374-C-A **
10841991-T-G **
10841978-C-G **
10841963-C-G **
10836620-T-A **
10805450-T-G **
10835305-G-A **
10833160-C-T **
10829231-T-A **
10827210-A-C **
10827061-CTCCTT-C **
10825267-T-A **
10821290-C-A **
10820806-G-T **
10820797-T-C **
10819985-C-A **
10819978-T-C **
10817457-T-A **
10805485-G-A **
10805453-C-T **
10673424-T-C **
27573-G-T **
10659146-A-C **
7217459-A-T 7349418-A-T **
9514801-T-C 9677192-T-C **
7100716-T-G 7232675-T-G **
9493031-T-A 9655422-T-A **
7197399-CTTT-C 7329358-CTTT-C 12×T**
9141871-A-C 9304262-A-C **
9070072-C-T 9232463-C-T **
9118226-C-A **
8690382-G-A 8822341-G-A **
7211265-C-A 7343224-C-A **
8379474-C-A 8511433-C-A **
8342879-C-A 8474838-C-A **
7214390-T-A 7346349-T-A **
8080773-A-C 8212732-A-C **
7040319-C-A 7172278-C-A **
10659107-T-A **
7239617-T-A 7371576-T-A **
7897694-G-T 8029653-G-T **
7257190-C-A 7389149-C-A **
7322835-C-A 7454794-C-A **
7774875-G-C 7906834-G-C **
7428165-A-C 7560124-A-C **
7428162-A-C 7560121-A-C **
7424295-A-G 7556254-A-G **
7385390-T-A 7517349-T-A **
7381818-A-T 7513777-A-T **
7349194-C-A 7481153-C-A **
9610036-TTGTG-T 9772427-TTGTG-T IR3_Prx **
7048184-T-C 7180143-T-C **
9674287-C-A 9836678-C-A IR3_Prx **
6384466-TG-T 6516425-TG-T **
10630008-C-A **
6289460-AATGC-A 6421419-AATGC-A IR3_Dst **
6369023-G-T 6500982-G-T **
10630020-A-ACTCTG **
6375664-A-T 6507623-A-T **
10629966-C-G **
9731568-C-A 9893959-C-A IR3_Prx **
10080165-C-A 10242556-C-A **
10024269-TC-T 10186660-TC-T **
10024267-T-TG 10186658-T-TG **
10629994-C-A **
6505995-G-T 6637954-G-T **
10023212-G-T 10185603-G-T **
10019637-C-A 10182028-C-A **
6289446-ACCAACAAG-A 6421405-ACCAACAAG-A IR3_Dst **
9975206-C-A 10137597-C-A **
6602685-G-T 6734644-G-T **
9804544-C-A 9966935-C-A **
6602768-G-T 6734727-G-T **
6289439-G-C 6421398-G-C IR3_Dst **
10630003-C-A **
56827523-TTTCCTTTCCTTTCCATTCCA-T,TTTCCTTTCCTTTCCTTTCCT ***
17319971-GAGAAAGAA-G 15208091-GAGAAAGAA-G 13×AGAA***
10833874-T-C ***
10944494-C-A ***
10895801-C-T ***
20213174-T-TCTTCTC 18051288-T-TCTTCTC P5_Dst 6×CTTCTC***
10865998-T-A,G ***
13962042-CTTTTT-C 11841336-CTTTTT-C 28×T***
14926462-CAA-C 12814527-CAA-C 26×A***
6922793-T-C 7054752-T-C ***
10821894-C-G ***
10822673-T-G ***
10956586-T-G ***
27618114-C-A 25471967-C-A P1_Y2 ***
22598280-C-A 20436394-C-A ***
22698929-C-CTT 20537043-C-CTT 13×T***
16823952-TAA-T,TA 14712072-TAA-T,TA 17×A***
13940101-C-A 11819395-C-A ***
11654016-C-A ***
4447511-C-A 4579470-C-A ***
2790303-C-CTTT 2922262-C-CTTT 15×T***
19508177-CT-C,CTT 17396297-CT-C,CTT 19×T***
10693204-C-A ***
2790432-A-G 2922391-A-G ***
21482747-C-A 19320861-C-A ***
21482757-C-A 19320871-C-A ***
9965559-C-T 10127950-C-T ***
22172819-C-A 20010933-C-A ***
19449428-GAAAA-G 17337548-GAAAA-G 23×A***
10763412-A-AG,G ***
10964244-T-G ***
10956572-T-A ***
10967554-A-C ***
10821850-T-C ***
18923342-G-GTT 16811462-G-GTT 18×T***
16860792-G-T 14748912-G-T ***
10983762-C-A ***
10808962-C-A ***
18769942-C-A 16658062-C-A ***
22885139-AT-A 20723253-AT-A ***
8217736-C-A 8349695-C-A ***
10794667-G-A ***
3991964-ACACA-A,ACACT 4123923-ACACA-A,ACACT ***
23824952-A-G 21663066-A-G ***
19202928-CAA-C 17091048-CAA-C 25×A***
9421409-C-A 9583800-C-A ***
21104453-AAAAA-A,AAAAC 18942567-AAAAA-A,AAAAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B90611985433580002857873669
Used in age calculations985433580002857873669
Counts of SNPs46
Variant counts last updated 2018-05-15 23:17:01.



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