Biggins
BigY2: 629651MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 629651 |
---|---|---|---|---|---|---|---|---|
22304581-C-G | 20142695-C-G | DYZ19 | A* | |||||
18371376-C-T | 16259496-C-T | P6_Prx | A* | |||||
9796976-C-T | 9959367-C-T | ZS3030 | Y | + | ||||
16964927-AT-A | 14853047-AT-A | + | ||||||
23045663-C-G | 20883777-C-G | BY142544 | Y | Y | + | |||
24452388-C-T | 22306241-C-T | BY150029 | Y | + | ||||
23195368-TTGTG-T | 21033482-TTGTG-T | 14×TG | * | |||||
6756935-G-A | 6888894-G-A | ** | ||||||
2668953-C-A | 2800912-C-A | ** | ||||||
14656179-G-A | 12544244-G-A | ** | ||||||
3640987-TTTTCCTTTCC-T | 3772946-TTTTCCTTTCC-T | 11×TTTCC | ** | |||||
14184472-G-A | 12063766-G-A | ** | ||||||
26730282-C-T | 24584135-C-T | FGC81255 | P1_g2 | ** | ||||
6918535-CA-C | 7050494-CA-C | 31×A | ** | |||||
9702913-TA-T | 9865304-TA-T | IR3_Prx | 9×A | ** | ||||
26228692-T-TC | 24082545-T-TC | P1_Y1 | ** | |||||
21067150-G-T | 18905264-G-T | ** | ||||||
14089808-C-A | 11969102-C-A | ** | ||||||
6355747-G-T | 6487706-G-T | ** | ||||||
4703124-C-A | 4835083-C-A | ** | ||||||
10759812-T-C | ** | |||||||
11643725-ATTGG-A | DYZ17 | ** | ||||||
13200488-T-G | 11044812-T-G | ** | ||||||
10940786-C-A | ** | |||||||
21489111-C-A | 19327225-C-A | ** | ||||||
10653461-C-T | ** | |||||||
10652673-C-T | ** | |||||||
14285770-C-A | 12165064-C-A | ** | ||||||
15107529-T-G | 12995616-T-G | ** | ||||||
17703282-G-C | 15591402-G-C | 6×GAAA | ** | |||||
10759817-T-A | ** | |||||||
19732405-T-G | 17620525-T-G | P5_Prx | ** | |||||
3033004-C-A | 3164963-C-A | ** | ||||||
14184484-A-C | 12063778-A-C | ** | ||||||
17703313-T-G | 15591433-T-G | ** | ||||||
10942721-CCT-C | ** | |||||||
19506774-T-A | 17394894-T-A | ** | ||||||
22103776-CAA-C | 19941890-CAA-C | 10×A | ** | |||||
14598856-G-T | 12487056-G-T | ** | ||||||
10683252-C-T | ** | |||||||
2686454-A-T | 2818413-A-T | FT366495 | ** | |||||
2768142-A-T | 2900101-A-T | ** | ||||||
2915172-C-A | 3047131-C-A | ** | ||||||
3108684-C-A | 3240643-C-A | ** | ||||||
3264102-T-A | 3396061-T-A | ** | ||||||
3264179-G-C | 3396138-G-C | ** | ||||||
3286328-G-A | 3418287-G-A | ** | ||||||
3366551-C-A | 3498510-C-A | ** | ||||||
3607139-C-A | 3739098-C-A | ** | ||||||
3621665-T-A | 3753624-T-A | ** | ||||||
3680883-C-A | 3812842-C-A | ** | ||||||
3721334-G-T | 3853293-G-T | ** | ||||||
3728583-G-T | 3860542-G-T | ** | ||||||
3980581-G-T | 4112540-G-T | ** | ||||||
3990402-C-A | 4122361-C-A | ** | ||||||
4080856-C-G | 4212815-C-G | ** | ||||||
4279059-G-T | 4411018-G-T | ** | ||||||
4353800-C-A | 4485759-C-A | ** | ||||||
4447561-C-A | 4579520-C-A | ** | ||||||
4872500-A-T | 5004459-A-T | ** | ||||||
4872549-C-G | 5004508-C-G | ** | ||||||
4872555-A-T | 5004514-A-T | ** | ||||||
4969337-G-T | 5101296-G-T | ** | ||||||
5127101-T-A | 5259060-T-A | ** | ||||||
5154240-G-T | 5286199-G-T | ** | ||||||
5212114-GA-G | 5344073-GA-G | ** | ||||||
6112791-T-A | 6244750-T-A | ** | ||||||
6112797-T-A | 6244756-T-A | ** | ||||||
6112808-T-A | 6244767-T-A | ** | ||||||
6112818-G-C | 6244777-G-C | ** | ||||||
6112830-T-A | 6244789-T-A | ** | ||||||
6112840-T-A | 6244799-T-A | ** | ||||||
6194457-A-G | 6326416-A-G | IR3_Dst | ** | |||||
6224857-C-T | 6356816-C-T | IR3_Dst | ** | |||||
6291079-G-T | 6423038-G-T | IR3_Dst | ** | |||||
6291086-C-A | 6423045-C-A | IR3_Dst | ** | |||||
6291088-T-A | 6423047-T-A | IR3_Dst | ** | |||||
6291093-C-A | 6423052-C-A | IR3_Dst | ** | |||||
6291100-T-A | 6423059-T-A | IR3_Dst | ** | |||||
6291101-T-A | 6423060-T-A | IR3_Dst | ** | |||||
6291106-T-A | 6423065-T-A | IR3_Dst | ** | |||||
6339276-C-A | 6471235-C-A | IR3_Dst | ** | |||||
6339295-G-T | 6471254-G-T | IR3_Dst | ** | |||||
6339296-G-T | 6471255-G-T | IR3_Dst | ** | |||||
6339301-C-A | 6471260-C-A | IR3_Dst | ** | |||||
6339305-G-T | 6471264-G-T | IR3_Dst | ** | |||||
6339335-C-A | 6471294-C-A | IR3_Dst | ** | |||||
6536731-T-A | 6668690-T-A | ** | ||||||
6596284-C-A | 6728243-C-A | ** | ||||||
6666389-G-T | 6798348-G-T | ** | ||||||
6780570-C-A | 6912529-C-A | FT18751 | ** | |||||
6808000-C-A | 6939959-C-A | ** | ||||||
6979717-C-A | 7111676-C-A | ** | ||||||
7020778-A-C | 7152737-A-C | ** | ||||||
7033320-A-C | 7165279-A-C | ** | ||||||
7181732-T-G | 7313691-T-G | ** | ||||||
7214524-C-A | 7346483-C-A | ** | ||||||
7222285-TGCTAATTATAGTCACCCTACAGGGCTATA-T | 7354244-TGCTAATTATAGTCACCCTACAGGGCTATA-T | ** | ||||||
7235851-T-TA | 7367810-T-TA | ** | ||||||
7237210-C-A | 7369169-C-A | ** | ||||||
7241137-A-T | 7373096-A-T | ** | ||||||
7313688-C-A | 7445647-C-A | FT178975 | ** | |||||
7335616-A-T | 7467575-A-T | ** | ||||||
7362639-C-A | 7494598-C-A | ** | ||||||
7375026-G-T | 7506985-G-T | ** | ||||||
7436824-A-T | 7568783-A-T | ** | ||||||
7775804-A-C | 7907763-A-C | ** | ||||||
7925828-G-T | 8057787-G-T | ** | ||||||
8019099-C-A | 8151058-C-A | ** | ||||||
8052616-C-A | 8184575-C-A | ** | ||||||
8136308-A-C | 8268267-A-C | ** | ||||||
8136317-A-C | 8268276-A-C | ** | ||||||
8155854-C-A | 8287813-C-A | ** | ||||||
8283862-A-G | 8415821-A-G | ** | ||||||
8290092-C-A | 8422051-C-A | ** | ||||||
8342945-A-T | 8474904-A-T | ** | ||||||
8379414-G-C | 8511373-G-C | ** | ||||||
8428943-GCA-G | 8560902-GCA-G | ** | ||||||
8691873-A-C | 8823832-A-C | ** | ||||||
8848468-C-A | 8980427-C-A | ** | ||||||
8850224-A-C | 8982183-A-C | ** | ||||||
9120166-C-A | ** | |||||||
8988098-A-C | 9150489-A-C | ** | ||||||
9058662-C-A | 9221053-C-A | ** | ||||||
9058709-A-T | 9221100-A-T | ** | ||||||
9058719-C-G | 9221110-C-G | ** | ||||||
9131168-A-T | 9293559-A-T | ** | ||||||
9327822-T-A | 9490213-T-A | ** | ||||||
9327837-T-A | 9490228-T-A | ** | ||||||
9327854-T-A | 9490245-T-A | ** | ||||||
9327889-T-A | 9490280-T-A | ** | ||||||
9371523-C-A | 9533914-C-A | ** | ||||||
9420358-A-G | 9582749-A-G | ** | ||||||
9442717-C-A | 9605108-C-A | ** | ||||||
9461805-C-A | 9624196-C-A | ** | ||||||
9610289-G-T | 9772680-G-T | IR3_Prx | ** | |||||
9654262-T-G | 9816653-T-G | IR3_Prx | ** | |||||
9944104-A-G | 10106495-A-G | ** | ||||||
9963361-C-A | 10125752-C-A | ** | ||||||
10017917-T-A | 10180308-T-A | ** | ||||||
10018245-T-G | 10180636-T-G | ** | ||||||
10025244-A-T | 10187635-A-T | ** | ||||||
10025360-A-T | 10187751-A-T | ** | ||||||
10032446-G-T | 10194837-G-T | ** | ||||||
10624313-A-T | ** | |||||||
10633207-A-C | ** | |||||||
10651884-C-A | ** | |||||||
10652667-C-G | ** | |||||||
10653981-T-G | ** | |||||||
10654068-C-A | ** | |||||||
10657087-T-G | ** | |||||||
10662895-C-A | ** | |||||||
10663784-G-C | ** | |||||||
10663787-A-G | ** | |||||||
10663799-T-C | ** | |||||||
10663800-T-G | ** | |||||||
10663815-C-A | ** | |||||||
10663826-C-A | ** | |||||||
10670870-C-A | ** | |||||||
10670919-T-A | ** | |||||||
10687982-C-A | ** | |||||||
10744389-T-G | ** | |||||||
10747874-C-T | ** | |||||||
10759802-C-A | ** | |||||||
10759824-C-T | ** | |||||||
10767688-CTCCAT-C | ** | |||||||
10767716-C-G | ** | |||||||
10767719-T-A | ** | |||||||
10781895-A-T | ** | |||||||
10789512-C-A | ** | |||||||
10793979-T-C | ** | |||||||
10802877-T-A | ** | |||||||
10802881-T-A | ** | |||||||
10802887-A-T | ** | |||||||
10802894-G-T | ** | |||||||
10802900-A-C | ** | |||||||
10802901-C-A | ** | |||||||
10802903-C-T | ** | |||||||
10802906-AAGTTC-A | ** | |||||||
10804523-C-A | ** | |||||||
10805122-G-T | ** | |||||||
10805165-TATTCC-T | ** | |||||||
10814886-C-G | ** | |||||||
10816517-A-C | ** | |||||||
10816518-G-A | ** | |||||||
10818664-T-G | ** | |||||||
10818677-A-C | ** | |||||||
10824975-C-T | ** | |||||||
10831466-C-A | ** | |||||||
10840990-T-A | ** | |||||||
10849768-C-A | ** | |||||||
10869577-C-T | ** | |||||||
10870852-T-A | ** | |||||||
10870857-C-A | ** | |||||||
10876006-C-A | ** | |||||||
10890412-A-G | ** | |||||||
10896318-C-CGAAAG | ** | |||||||
10916377-C-A | ** | |||||||
10919199-G-T | ** | |||||||
10921546-C-A | ** | |||||||
10925363-T-A | ** | |||||||
10935549-CTCCAT-C | ** | |||||||
10939013-C-A | ** | |||||||
10939044-T-C | ** | |||||||
10939060-C-T | ** | |||||||
10939063-C-G | ** | |||||||
10950655-T-C | ** | |||||||
10954669-T-C | ** | |||||||
10959193-T-A | ** | |||||||
10960671-G-T | ** | |||||||
10963229-A-ACTCTG | ** | |||||||
10969183-C-A | ** | |||||||
10969976-T-G | ** | |||||||
10987498-T-A | ** | |||||||
10997988-C-T | ** | |||||||
11001556-C-T | ** | |||||||
11001564-C-A | ** | |||||||
11001566-C-T | ** | |||||||
11001571-C-A | ** | |||||||
11001576-T-A | ** | |||||||
11014619-C-T | ** | |||||||
11016462-C-A | ** | |||||||
11017612-T-C | ** | |||||||
11020061-C-A | ** | |||||||
11027460-G-T | ** | |||||||
11031660-C-A | ** | |||||||
11033560-T-G | ** | |||||||
13216530-T-A | 11060854-T-A | ** | ||||||
13234847-T-A | 11079171-T-A | ** | ||||||
13234949-C-A | 11079273-C-A | ** | ||||||
13299364-G-A | 11143688-G-A | ** | ||||||
13404587-TC-T | 11248911-TC-T | ** | ||||||
13468933-C-A | 11313257-C-A | ** | ||||||
13489396-C-G | 11333720-C-G | ** | ||||||
13522373-G-GA | 11366697-G-GA | ** | ||||||
13641210-C-A | 11485534-C-A | ** | ||||||
13697328-G-C | 11541652-G-C | DYZ17 | ** | |||||
13726023-C-A | 11570347-C-A | DYZ17 | ** | |||||
13726026-G-T | 11570350-G-T | DYZ17 | ** | |||||
13726414-G-T | 11570738-G-T | DYZ17 | ** | |||||
11652887-A-C | DYZ17 | ** | ||||||
11652895-A-G | DYZ17 | ** | ||||||
11652914-A-G | DYZ17 | ** | ||||||
11653832-G-A | DYZ17 | ** | ||||||
11653834-C-G | DYZ17 | ** | ||||||
11653836-C-G | DYZ17 | ** | ||||||
11655584-C-A | DYZ17 | ** | ||||||
11656966-C-A | DYZ17 | ** | ||||||
11673302-G-T | DYZ17 | ** | ||||||
13856834-A-C | 11736128-A-C | DYZ17 | ** | |||||
13856837-G-C | 11736131-G-C | DYZ17 | ** | |||||
13857024-A-G | 11736318-A-G | FTB50971 | DYZ17 | ** | ||||
13857048-T-A | 11736342-T-A | DYZ17 | ** | |||||
13857076-T-A | 11736370-T-A | DYZ17 | ** | |||||
13858060-G-A | 11737354-G-A | DYZ17 | ** | |||||
13882104-A-G | 11761398-A-G | ** | ||||||
13908471-T-A | 11787765-T-A | ** | ||||||
13953220-C-A | 11832514-C-A | ** | ||||||
13974057-T-C | 11853351-T-C | ** | ||||||
13999224-G-T | 11878518-G-T | ** | ||||||
14076842-C-A | 11956136-C-A | ** | ||||||
14146087-A-G | 12025381-A-G | ** | ||||||
14204922-C-A | 12084216-C-A | ** | ||||||
14273039-T-G | 12152333-T-G | ** | ||||||
14355032-C-A | 12234327-C-A | ** | ||||||
14366360-C-A | 12245655-C-A | ** | ||||||
14383750-A-T | 12263046-A-T | ** | ||||||
14397460-C-A | 12276756-C-A | ** | ||||||
14462594-C-A | 12341867-C-A | ** | ||||||
14467708-A-G | 12346977-A-G | ** | ||||||
14467822-C-A | 12347091-C-A | ** | ||||||
14488359-C-A | 12367628-C-A | ** | ||||||
14531435-T-A | 12419636-T-A | ** | ||||||
14532014-C-A | 12420215-C-A | ** | ||||||
14582141-A-T | 12470341-A-T | FT67775 | ** | |||||
14607729-G-T | 12495931-G-T | ** | ||||||
14688679-C-A | 12576745-C-A | ** | ||||||
14696042-G-T | 12584108-G-T | ** | ||||||
14785595-G-T | 12673665-G-T | ** | ||||||
14807415-C-A | 12695486-C-A | ** | ||||||
14981811-T-G | 12869887-T-G | ** | ||||||
15041084-A-G | 12929174-A-G | ** | ||||||
15091710-T-G | 12979799-T-G | ** | ||||||
15091761-A-C | 12979850-A-C | ** | ||||||
15107520-A-ACCC | 12995607-A-ACCC | ** | ||||||
15107524-GATT-C | 12995611-GATT-C | ** | ||||||
15111547-C-A | 12999634-C-A | ** | ||||||
15114170-C-A | 13002257-C-A | ** | ||||||
15171609-T-A | 13059695-T-A | ** | ||||||
15232172-A-C | 13120258-A-C | ** | ||||||
15238977-T-C | 13127063-T-C | ** | ||||||
15400415-A-C | 13288535-A-C | ** | ||||||
15410849-C-A | 13298969-C-A | ** | ||||||
15450267-T-C | 13338387-T-C | ** | ||||||
15542694-T-A | 13430814-T-A | ** | ||||||
15604743-TATAAATAAATAATTTTTTAAATTACAAA-T | 13492863-TATAAATAAATAATTTTTTAAATTACAAA-T | ** | ||||||
15620434-C-A | 13508554-C-A | ** | ||||||
15662378-C-A | 13550498-C-A | ** | ||||||
15688479-A-C | 13576599-A-C | ** | ||||||
15762129-A-G | 13650249-A-G | ** | ||||||
15762182-T-A | 13650302-T-A | ** | ||||||
15774886-C-A | 13663006-C-A | ** | ||||||
15873446-C-A | 13761566-C-A | ** | ||||||
15921585-C-A | 13809705-C-A | ** | ||||||
16045265-C-A | 13933385-C-A | ** | ||||||
16048950-C-A | 13937070-C-A | ** | ||||||
16050064-A-C | 13938184-A-C | ** | ||||||
16092891-C-A | 13981011-C-A | ** | ||||||
16093879-C-A | 13981999-C-A | ** | ||||||
16192670-C-A | 14080790-C-A | ** | ||||||
16250624-GTTTTT-G | 14138744-GTTTTT-G | 28×T | ** | |||||
16270761-G-T | 14158881-G-T | ** | ||||||
16291976-A-C | 14180096-A-C | ** | ||||||
16309215-C-A | 14197335-C-A | ** | ||||||
16508679-C-A | 14396799-C-A | ** | ||||||
16520764-C-T | 14408884-C-T | ** | ||||||
16572769-A-T | 14460889-A-T | ** | ||||||
16598938-C-A | 14487058-C-A | ** | ||||||
16598950-C-A | 14487070-C-A | ** | ||||||
16598973-C-A | 14487093-C-A | ** | ||||||
16599119-A-T | 14487239-A-T | ** | ||||||
16654855-T-G | 14542975-T-G | ** | ||||||
16667031-T-G | 14555151-T-G | ** | ||||||
16707280-C-A | 14595400-C-A | ** | ||||||
16766308-C-A | 14654428-C-A | ** | ||||||
16813861-TTTTA-T | 14701981-TTTTA-T | 6×TTTA | ** | |||||
16860863-C-A | 14748983-C-A | ** | ||||||
17090783-C-A | 14978903-C-A | ** | ||||||
17095926-G-T | 14984046-G-T | ** | ||||||
17118392-C-A | 15006512-C-A | ** | ||||||
17136931-CTTTT-C | 15025051-CTTTT-C | 18×T | ** | |||||
17196710-A-C | 15084830-A-C | ** | ||||||
17213281-C-T | 15101401-C-T | ** | ||||||
17215118-G-T | 15103238-G-T | ** | ||||||
17297386-T-A | 15185506-T-A | ** | ||||||
17342923-T-G | 15231043-T-G | ** | ||||||
17597689-C-A | 15485809-C-A | ** | ||||||
17867447-G-A | 15755567-G-A | ** | ||||||
18054447-G-A | 15942567-G-A | ** | ||||||
18090151-C-A | 15978271-C-A | FT42930 | ** | |||||
18093895-A-G | 15982015-A-G | ** | ||||||
18119489-T-G | 16007609-T-G | ** | ||||||
18190346-A-T | 16078466-A-T | ** | ||||||
18346557-G-T | 16234677-G-T | P6_Prx | ** | |||||
18443620-G-T | 16331740-G-T | P6_Dst | ** | |||||
18454745-C-A | 16342865-C-A | P6_Dst | ** | |||||
18534197-C-CAT | 16422317-C-CAT | P6_Dst | ** | |||||
18549419-A-C | 16437539-A-C | ** | ||||||
18654742-C-A | 16542862-C-A | ** | ||||||
18703111-C-A | 16591231-C-A | ** | ||||||
18707397-T-A | 16595517-T-A | ** | ||||||
18723087-T-A | 16611207-T-A | ** | ||||||
18736521-C-A | 16624641-C-A | ** | ||||||
18758965-A-C | 16647085-A-C | ** | ||||||
18764496-G-T | 16652616-G-T | ** | ||||||
18772491-C-A | 16660611-C-A | ** | ||||||
18933341-T-C | 16821461-T-C | ** | ||||||
18940700-C-A | 16828820-C-A | ** | ||||||
19007880-T-A | 16896000-T-A | ** | ||||||
19059889-G-A | 16948009-G-A | ** | ||||||
19065278-G-T | 16953398-G-T | ** | ||||||
19135370-T-G | 17023490-T-G | ** | ||||||
19246712-A-C | 17134832-A-C | ** | ||||||
19272074-C-A | 17160194-C-A | ** | ||||||
19379500-C-A | 17267620-C-A | ** | ||||||
19413335-GGA-G | 17301455-GGA-G | ** | ||||||
19557474-A-C | 17445594-A-C | ** | ||||||
19573971-A-T | 17462091-A-T | P5_Prx | ** | |||||
19758801-T-TG | 17646921-T-TG | P5_Prx | ** | |||||
19799967-T-A | 17688087-T-A | P5_Prx | ** | |||||
19817591-C-A | 17705711-C-A | P5_Prx | ** | |||||
19817599-A-T | 17705719-A-T | P5_Prx | ** | |||||
19974625-T-A | 17862745-T-A | P5_Prx | ** | |||||
19974687-T-A | 17862807-T-A | P5_Prx | ** | |||||
20469342-A-T | 18307456-A-T | P5_Dst | ** | |||||
20469350-G-T | 18307464-G-T | P5_Dst | ** | |||||
20469359-A-T | 18307473-A-T | P5_Dst | ** | |||||
20469368-A-T | 18307482-A-T | P5_Dst | ** | |||||
20469370-G-T | 18307484-G-T | P5_Dst | ** | |||||
20469378-A-T | 18307492-A-T | P5_Dst | ** | |||||
20469385-C-A | 18307499-C-A | P5_Dst | ** | |||||
20598216-G-T | 18436330-G-T | P5_Dst | ** | |||||
20598224-A-T | 18436338-A-T | P5_Dst | ** | |||||
20598229-A-T | 18436343-A-T | P5_Dst | ** | |||||
20598237-G-T | 18436351-G-T | P5_Dst | ** | |||||
20598244-A-T | 18436358-A-T | P5_Dst | ** | |||||
20598250-A-T | 18436364-A-T | P5_Dst | ** | |||||
20598266-A-T | 18436380-A-T | P5_Dst | ** | |||||
20977552-A-T | 18815666-A-T | P4_Dst | ** | |||||
21091055-A-C | 18929169-A-C | ** | ||||||
21149594-T-TA | 18987708-T-TA | ** | ||||||
21156831-GTTTTTT-G | 18994945-GTTTTTT-G | 19×T | ** | |||||
21184478-A-T | 19022592-A-T | ** | ||||||
21266740-C-A | 19104854-C-A | ** | ||||||
21308845-C-A | 19146959-C-A | ** | ||||||
21362048-G-A | 19200162-G-A | ** | ||||||
21426988-T-G | 19265102-T-G | ** | ||||||
21476962-T-A | 19315076-T-A | ** | ||||||
21519050-T-A | 19357164-T-A | ** | ||||||
21672183-A-C | 19510297-A-C | ** | ||||||
21677474-G-A | 19515588-G-A | ** | ||||||
22040764-GA-G | 19878878-GA-G | 9×A | ** | |||||
22171342-A-C | 20009456-A-C | ** | ||||||
22313344-A-T | 20151458-A-T | DYZ19 | ** | |||||
22313391-C-A | 20151505-C-A | DYZ19 | ** | |||||
22313392-A-T | 20151506-A-T | DYZ19 | ** | |||||
22366272-A-T | 20204386-A-T | DYZ19 | ** | |||||
22426934-C-A | 20265048-C-A | DYZ19 | ** | |||||
22615419-C-G | 20453533-C-G | ** | ||||||
22787273-T-A | 20625387-T-A | ** | ||||||
22841651-G-T | 20679765-G-T | 9×A | ** | |||||
22963451-C-A | 20801565-C-A | ** | ||||||
23009798-T-A | 20847912-T-A | ** | ||||||
23059649-C-A | 20897763-C-A | ** | ||||||
23065824-G-T | 20903938-G-T | ** | ||||||
23097960-C-G | 20936074-C-G | ** | ||||||
23184246-G-A | 21022360-G-A | ** | ||||||
23306519-A-T | 21144633-A-T | ** | ||||||
23332183-C-G | 21170297-C-G | ** | ||||||
23337198-T-C | 21175312-T-C | ** | ||||||
23380908-C-A | 21219022-C-A | ** | ||||||
23416770-C-A | 21254884-C-A | ** | ||||||
23464879-G-T | 21302993-G-T | ** | ||||||
23468546-T-A | 21306660-T-A | ** | ||||||
23580752-GTATTTTCTTTTC-G | 21418866-GTATTTTCTTTTC-G | ** | ||||||
23597368-T-C | 21435482-T-C | ** | ||||||
23802359-C-T | 21640473-C-T | ** | ||||||
24343173-A-T | 22197026-A-T | P3_t1 | ** | |||||
24343180-G-T | 22197033-G-T | P3_t1 | ** | |||||
24353631-T-A | 22207484-T-A | P3_t1 | ** | |||||
24614207-C-A | 22468060-C-A | P3_t2 | ** | |||||
24614228-C-A | 22468081-C-A | P3_t2 | ** | |||||
24877193-T-G | 22731046-T-G | g1 | ** | |||||
25938186-G-T | 23792039-G-T | P1_Y1 | ** | |||||
25985246-A-T | 23839099-A-T | P1_Y1 | ** | |||||
25985265-A-T | 23839118-A-T | P1_Y1 | ** | |||||
25985307-C-A | 23839160-C-A | P1_Y1 | ** | |||||
26073719-A-T | 23927572-A-T | P1_Y1 | ** | |||||
26073727-A-T | 23927580-A-T | P1_Y1 | ** | |||||
26073743-A-T | 23927596-A-T | P1_Y1 | ** | |||||
26073747-G-T | 23927600-G-T | P1_Y1 | ** | |||||
26073749-A-T | 23927602-A-T | P1_Y1 | ** | |||||
26073755-A-T | 23927608-A-T | P1_Y1 | ** | |||||
26124385-T-A | 23978238-T-A | P1_Y1 | ** | |||||
26124391-C-A | 23978244-C-A | P1_Y1 | ** | |||||
26273270-T-A | 24127123-T-A | P1_Y1 | ** | |||||
27540902-G-T | 25394755-G-T | P1_Y2 | ** | |||||
27584596-C-A | 25438449-C-A | P1_Y2 | ** | |||||
27620731-C-T | 25474584-C-T | P1_Y2 | ** | |||||
27620734-C-T | 25474587-C-T | P1_Y2 | ** | |||||
27620748-C-T | 25474601-C-T | P1_Y2 | ** | |||||
27620753-A-T | 25474606-A-T | P1_Y2 | ** | |||||
27620761-G-T | 25474614-G-T | P1_Y2 | ** | |||||
27971754-CA-C | 25825607-CA-C | P1_Y2 | ** | |||||
28503032-G-T | 26356885-G-T | ** | ||||||
28521746-A-T | 26375599-A-T | ** | ||||||
28536188-A-T | 26390041-A-T | ** | ||||||
28536250-C-A | 26390103-C-A | ** | ||||||
28541478-G-C | 26395331-G-C | ** | ||||||
28558945-C-A | 26412798-C-A | ** | ||||||
28612356-G-T | 26466209-G-T | ** | ||||||
28720900-A-C | 26574753-A-C | ** | ||||||
28773864-T-A | 26627717-T-A | ** | ||||||
28794215-A-G | 26648068-A-G | ** | ||||||
28818389-T-A | 26672242-T-A | ** | ||||||
28818397-A-G | 26672250-A-G | ** | ||||||
56830152-C-A | ** | |||||||
56838799-G-T | ** | |||||||
56841690-A-C | ** | |||||||
56841997-C-G | ** | |||||||
56841998-C-G | ** | |||||||
56842001-C-T | ** | |||||||
56842002-A-G | ** | |||||||
56842831-A-T | ** | |||||||
56843556-T-A | ** | |||||||
56843566-G-A | ** | |||||||
56843569-A-T | ** | |||||||
56843601-G-A | ** | |||||||
56843607-T-A | ** | |||||||
56843608-A-T | ** | |||||||
56843622-C-T | ** | |||||||
56847341-C-T | ** | |||||||
56851447-T-G | ** | |||||||
56851691-C-A | ** | |||||||
56862176-G-T | ** | |||||||
23471038-CAAAAAAA-C | 21309152-CAAAAAAA-C | 19×A | *** | |||||
58980693-ACCATTCCATTCCACT-A | 56834546-ACCATTCCATTCCACT-A | *** | ||||||
58979087-C-T | 56832940-C-T | *** | ||||||
10658331-ACCATT-A | *** | |||||||
23068248-C-A | 20906362-C-A | *** | ||||||
8344081-G-T | 8476040-G-T | *** | ||||||
21202569-C-A | 19040683-C-A | *** | ||||||
18052568-ATTTT-A | 15940688-ATTTT-A | 16×T | *** | |||||
18686030-GA-G | 16574150-GA-G | 10×A | *** | |||||
2695618-C-A | 2827577-C-A | *** | ||||||
2879312-C-A | 3011271-C-A | *** | ||||||
4585679-C-A | 4717638-C-A | *** | ||||||
7233361-C-A | 7365320-C-A | *** | ||||||
7504925-A-G | 7636884-A-G | IR1_L | *** | |||||
7975995-C-A | 8107954-C-A | *** | ||||||
8171045-C-A | 8303004-C-A | *** | ||||||
9867206-C-A | 10029597-C-A | *** | ||||||
10662201-C-A | *** | |||||||
10667123-C-A | *** | |||||||
10763108-T-C | *** | |||||||
11656551-A-G | DYZ17 | *** | ||||||
14389284-C-A | 12268580-C-A | *** | ||||||
14557551-G-T | 12445752-G-T | *** | ||||||
15480282-C-A | 13368402-C-A | *** | ||||||
15642687-C-A | 13530807-C-A | *** | ||||||
15657068-C-A | 13545188-C-A | *** | ||||||
15770485-G-T | 13658605-G-T | Y94730 | *** | |||||
16079004-C-A | 13967124-C-A | *** | ||||||
16581432-G-T | 14469552-G-T | *** | ||||||
16648102-C-A | 14536222-C-A | *** | ||||||
16888629-C-A | 14776749-C-A | *** | ||||||
18738114-CTT-C,CT | 16626234-CTT-C,CT | 19×T | *** | |||||
18907745-T-A | 16795865-T-A | *** | ||||||
19061222-C-A | 16949342-C-A | *** | ||||||
20816924-CA-C,CAA | 18655038-CA-C,CAA | P4_Gap | 22×A | *** | ||||
21067143-C-A | 18905257-C-A | *** | ||||||
21149555-T-C | 18987669-T-C | *** | ||||||
21208944-A-C | 19047058-A-C | *** | ||||||
21603900-C-A | 19442014-C-A | *** | ||||||
21891274-C-A | 19729388-C-A | *** | ||||||
22658388-C-A | 20496502-C-A | *** | ||||||
22662560-C-A | 20500674-C-A | *** | ||||||
22932519-T-TA | 20770633-T-TA | 9×A | *** | |||||
22999053-C-A | 20837167-C-A | *** | ||||||
23419317-C-A | 21257431-C-A | *** | ||||||
23435682-CTTTTTT-C,CTTTT | 21273796-CTTTTTT-C,CTTTT | 21×T | *** | |||||
23823597-CA-C | 21661711-CA-C | *** | ||||||
23827759-C-A | 21665873-C-A | *** | ||||||
27883604-C-A | 25737457-C-A | P1_Y2 | *** | |||||
56828978-C-A | *** | |||||||
56829942-C-CAATTG | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.