Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > Z251/S470 > FGC13899

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B210885
23721327-T-C 21559441-T-C A*
25860332-G-A 23714185-G-A P1_Y1 A*
26221951-G-C 24075804-G-C P1_Y1 A*
20621497-A-G 18459611-A-G P4_Prx A*
19951506-A-G 17839626-A-G P5_Prx A*
6279124-A-G 6411083-A-G IR3_Dst A*
6280078-C-T 6412037-C-T IR3_Dst A*
7906131-G-A 8038090-G-A BY68634 YY+
14622373-A-G 12510571-A-G BY96828 YY+
17800558-T-C 15688678-T-C BY117474 YY+
23280960-C-G 21119074-C-G BY144323 YY+
23236630-T-C 21074744-T-C BY143917 Y+
23195667-G-A 21033781-G-A BY143739 Y+
17512759-C-T 15400879-C-T BY115359 YY+
22299860-G-C 20137974-G-C BY43778 DYZ19 +
22574260-C-A 20412374-C-A BY139187 YY+
22525524-G-A 20363638-G-A BY138740 Y+
2693985-T-C 2825944-T-C YY+
18872909-C-T 16761029-C-T YY+
15660807-T-C 13548927-T-C BY103171 YY+
15666114-C-A 13554234-C-A BY103210 Y+
16340803-T-C 14228923-T-C BY107079 YY+
21612728-G-T 19450842-G-T BY134196 YY+
16335918-C-T 14224038-C-T BY107035 YY+
17808272-A-G 15696392-A-G BY117532 YY+
14242573-G-A 12121867-G-A BY94238 YY+
2656786-C-T 2788745-C-T BY55673 YY+
7137307-A-T 7269266-A-T BY63476 YY8×T+
7555834-A-G 7687793-A-G BY65875 YY+
8286170-A-G 8418129-A-G BY71417 YY+
7104517-TTC-T 7236476-TTC-T +
18868480-T-A 16756600-T-A M2590 YY+
8369429-G-A 8501388-G-A YY+
18786777-A-G 16674897-A-G BY123900 YY+
8770385-G-T 8902344-G-T BY75759 YY+
8967116-TA-T 9129507-TA-T +
28019473-C-T 25873326-C-T P1_Y2 +
6932530-G-C 7064489-G-C SK1489 YY+
6962821-G-A 7094780-G-A BY62558 YY+
20001349-A-G 17889469-A-G P5_Prx *
22257788-A-T 20095902-A-T DYZ19 *
22238249-C-G 20076363-C-G DYZ19 *
17462104-C-A 15350224-C-A **
18794973-C-A 16683093-C-A **
18101514-C-A 15989634-C-A **
16063236-C-A 13951356-C-A **
16341067-C-A 14229187-C-A **
16689731-T-C 14577851-T-C **
18144085-G-T 16032205-G-T **
18310203-T-G 16198323-T-G P6_Prx **
16972263-C-A 14860383-C-A **
18310166-A-C 16198286-A-C P6_Prx **
17270639-G-C 15158759-G-C **
18688456-C-A 16576576-C-A **
16973016-C-A 14861136-C-A **
17155764-C-A 15043884-C-A **
18630972-C-A 16519092-C-A **
18547162-T-G 16435282-T-G **
16271807-GAAAAAAA-G 14159927-GAAAAAAA-G 19×A**
22297878-A-C 20135992-A-C Z29644BY36128 DYZ19 **
16035775-A-C 13923895-A-C **
13857945-G-A 11737239-G-A **
14034954-A-C 11914248-A-C **
14027153-T-A 11906447-T-A **
13963904-C-A 11843198-C-A **
13940084-C-A 11819378-C-A **
13870514-G-T 11749808-G-T **
13859453-A-C 11738747-A-C **
13847174-AAATGG-A 11726468-AAATGG-A 6×AATGG**
14075155-G-T 11954449-G-T **
11674284-G-T **
11673617-G-T **
11665012-A-T **
11659086-C-A **
11643298-G-A **
13593249-T-G 11437573-T-G **
14052815-G-A 11932109-G-A **
14080110-C-A 11959404-C-A **
16035494-G-T 13923614-G-T **
15083339-G-T 12971429-G-T **
15937251-T-A 13825371-T-A **
15894642-T-C 13782762-T-C **
15747989-G-T 13636109-G-T **
15676948-A-G 13565068-A-G **
15386350-G-A 13274470-G-A **
15368106-C-A 13256226-C-A **
14910955-C-A 12799022-C-A **
14101245-T-C 11980539-T-C **
14845350-C-A 12733416-C-A **
14769083-C-A 12657152-C-A **
14614571-C-A 12502769-C-A **
14539365-C-A 12427566-C-A **
14516848-C-A 12405049-C-A **
14509381-C-A 12397586-C-A FGC40891 Y18680 **
14121948-G-T 12001242-G-T **
15315421-C-A 13203526-C-A **
19535658-C-A 17423778-C-A **
18929005-C-A 16817125-C-A **
24336820-G-T 22190673-G-T P3_t1 **
22170325-T-G 20008439-T-G **
22221190-G-T 20059304-G-T DYZ19 **
22230700-G-T 20068814-G-T DYZ19 **
22240554-G-T 20078668-G-T DYZ19 **
22297898-C-T 20136012-C-T DYZ19 **
22468310-C-T 20306424-C-T DYZ19 **
22644914-C-A 20483028-C-A **
22963362-C-A 20801476-C-A **
22991128-C-A 20829242-C-A **
23062768-C-A 20900882-C-A **
23442659-A-T 21280773-A-T **
24247529-C-CT 22101382-C-CT P3_b1 **
24267329-G-C 22121182-G-C P3_b1 **
24267351-C-A 22121204-C-A P3_b1 **
24582353-T-TTA 22436206-T-TTA P3_t2 **
22170242-C-G 20008356-C-G **
28727775-C-A 26581628-C-A **
56851359-G-T **
56845903-A-C **
56843547-C-A **
56837186-A-G **
56836513-CT-C **
56728118-G-T **
28642852-A-AC 26496705-A-AC **
26248188-C-A 24102041-C-A P1_Y1 **
28642788-CCTCT-C 26496641-CCTCT-C 8×CT**
28635155-A-C 26489008-A-C **
28500232-G-T 26354085-G-T **
27862565-AGAGAGAGAGAGAGACAAAGG-A 25716418-AGAGAGAGAGAGAGACAAAGG-A P1_Y2 **
27840305-A-T 25694158-A-T P1_Y2 **
27357602-G-T 25211455-G-T P1_g3 **
22170285-T-G 20008399-T-G **
21994006-C-CAG 19832120-C-CAG 9×AG**
18948037-CT-C 16836157-CT-C **
20392047-A-T 18230161-A-T P5_Dst **
18966229-C-A 16854349-C-A **
19075271-C-A 16963391-C-A **
19075411-C-G 16963531-C-G **
19304275-C-A 17192395-C-A **
19304664-C-A 17192784-C-A **
19340531-A-T 17228651-A-T **
19377528-A-C 17265648-A-C **
19411774-C-A 17299894-C-A **
13417351-T-A 11261675-T-A **
19600618-G-GTGTA 17488738-G-GTGTA P5_Prx **
19743880-C-A 17632000-C-A P5_Prx **
19770166-C-A 17658286-C-A P5_Prx **
20376597-C-A 18214711-C-A P5_Dst **
20391927-G-T 18230041-G-T P5_Dst **
20392072-G-T 18230186-G-T P5_Dst **
21946945-A-T 19785059-A-T 15×T**
21037350-A-C 18875464-A-C **
21802699-C-A 19640813-C-A **
21651662-C-A 19489776-C-A **
21597010-C-A 19435124-C-A **
21580715-G-T 19418829-G-T **
21306618-G-GA 19144732-G-GA **
21154115-C-A 18992229-C-A **
20850649-G-A 18688763-G-A P4_Dst **
20424797-G-T 18262911-G-T P5_Dst **
20762311-T-A 18600425-T-A P4_Prx **
20747604-C-A 18585718-C-A P4_Prx **
20668387-T-A 18506501-T-A P4_Prx **
20596666-T-A 18434780-T-A P5_Dst **
20596631-T-A 18434745-T-A P5_Dst **
20424847-A-C 18262961-A-C P5_Dst **
13461570-T-C 11305894-T-C **
13394856-C-A 11239180-C-A **
5302581-TTC-T 5434540-TTC-T 8×TC**
5869415-G-T 6001374-G-T **
6173224-C-T 6305183-C-T IR3_Dst **
6094883-G-T 6226842-G-T **
5923783-A-C 6055742-A-C **
5923745-G-T 6055704-G-T **
5923729-T-G 6055688-T-G **
5900180-C-A 6032139-C-A **
5789565-G-T 5921524-G-T **
6173290-A-T 6305249-A-T IR3_Dst **
5785454-C-A 5917413-C-A **
5669039-G-T 5800998-G-T **
5576838-C-A 5708797-C-A **
5420625-C-A 5552584-C-A **
5214358-C-G 5346317-C-G **
4979544-G-T 5111503-G-T **
6173288-A-C 6305247-A-C IR3_Dst **
6227877-T-A 6359836-T-A IR3_Dst **
4653275-C-A 4785234-C-A **
7110436-C-A 7242395-C-A **
7437545-G-C 7569504-G-C **
7383768-A-G 7515727-A-G **
7231058-C-A 7363017-C-A **
7221638-C-A 7353597-C-A **
7135140-C-A 7267099-C-A **
7116104-A-C 7248063-A-C **
6922990-A-C 7054949-A-C **
6305925-AAAG-A 6437884-AAAG-A IR3_Dst **
6822599-C-A 6954558-C-A **
6651330-A-T 6783289-A-T **
6461015-T-A 6592974-T-A **
6434071-C-A 6566030-C-A **
6418802-C-A 6550761-C-A **
6347516-C-T 6479475-C-T **
4915087-G-T 5047046-G-T **
4470779-A-T 4602738-A-T **
7541277-G-T 7673236-G-T **
7713432-C-A 7845391-C-A **
13726405-G-A 11570729-G-A **
20579333-A-ATT 18417447-A-ATT P5_Dst **
14614595-C-A 12502793-C-A **
10037785-C-A 10200176-C-A **
7579792-C-A 7711751-C-A **
10759970-C-T **
11020252-C-A **
5458566-C-A 5590525-C-A **
15556737-C-A 13444857-C-A **
28485818-C-A 26339671-C-A **
6978237-C-A 7110196-C-A **
5753522-CT-C 5885481-CT-C 10×T**
19071777-G-A 16959897-G-A Y55312 **
14093486-C-A 11972780-C-A **
5084384-C-A 5216343-C-A **
10754958-A-T **
4422036-T-C 4553995-T-C **
3645608-C-A 3777567-C-A **
4346565-ATTTTTT-A 4478524-ATTTTTT-A 22×T**
4316324-A-T 4448283-A-T **
4178050-C-A 4310009-C-A **
4101040-C-A 4232999-C-A **
4070162-C-A 4202121-C-A **
4056797-C-A 4188756-C-A **
3437077-G-T 3569036-G-T **
2795579-T-A 2927538-T-A **
3363300-C-A 3495259-C-A **
3116062-C-A 3248021-C-A **
3029990-C-A 3161949-C-A **
3012797-CAT-C 3144756-CAT-C **
2975514-C-A 3107473-C-A **
2970438-C-A 3102397-C-A **
2926380-C-A 3058339-C-A **
7443393-C-A 7575352-C-A **
7166106-G-T 7298065-G-T **
8140273-A-T 8272232-A-T **
10859392-G-A **
10912812-C-A **
10875781-C-T **
10870904-C-A **
10870666-C-A **
10859926-C-A **
10859497-A-T **
10858964-C-A **
10932730-C-CAGTAG **
10856110-G-T **
10849936-G-T **
10834860-C-G **
10826255-C-A **
10809105-T-G **
10809055-C-G **
10912922-G-T **
10943046-C-A **
10786296-G-T **
10989193-A-T **
13394811-A-T 11239135-A-T **
13394802-C-A 11239126-C-A **
13290884-C-A 11135208-C-A **
11014509-T-G **
11005776-C-A **
10992976-T-A **
10988818-T-G **
10946902-C-A **
10985367-T-A **
10973992-C-T **
10971117-GTC-A **
10971110-CATT-C **
10964076-C-A **
10963592-G-T **
10946909-C-A **
10787760-AT-A **
10834863-G-A **
10783345-G-T **
10034074-C-A 10196465-C-A **
8501464-G-C 8633423-G-C **
8692784-C-A 8824743-C-A **
8856899-C-A 8988858-C-A **
9030085-G-T 9192476-G-T **
9040826-T-C 9203217-T-C **
9186068-C-A 9348459-C-A **
9465177-T-A 9627568-T-A **
9507931-C-A 9670322-C-A **
9507980-C-A 9670371-C-A **
10775220-C-A **
9735603-CTGTTTT-C 9897994-CTGTTTT-C IR3_Prx **
9922269-C-G 10084660-C-G **
10006001-C-A 10168392-C-A **
9699753-A-T 9862144-A-T IR3_Prx **
56858078-G-T **
10759791-A-AATCCT **
10754944-T-G **
10769232-C-G **
10760234-C-A **
10761196-G-T **
10754970-T-C **
18547256-C-A 16435376-C-A ***
13456179-C-A 11300503-C-A ***
7166732-C-A 7298691-C-A ***
13478261-G-T 11322585-G-T ***
21394585-C-A 19232699-C-A ***
7237354-A-G 7369313-A-G ***
13441805-C-A 11286129-C-A ***
28800450-G-A 26654303-G-A ***
28800456-A-G 26654309-A-G ***
13642437-C-A 11486761-C-A ***
22127975-CTTTTTT-C,CTTTTT 19966089-CTTTTTT-C,CTTTTT 20×T***
13478244-C-T 11322568-C-T ***
28800468-A-G 26654321-A-G CTS36 ***
7195227-CAAAAA-C,CAAAAAA 7327186-CAAAAA-C,CAAAAAA 17×A***
16530676-C-A 14418796-C-A ***
19469877-ACCC-A,AC 17357997-ACCC-A,AC 12×C***
17375785-G-T 15263905-G-T ***
10023423-C-A 10185814-C-A ***
10866238-C-CTTCCA ***
22972994-C-A 20811108-C-A ***
4236005-T-C 4367964-T-C ***
4302086-CA-C 4434045-CA-C ***
14969046-C-CTT 12857121-C-CTT 11×T***
6395689-C-A 6527648-C-A ***
9034655-C-CAA 9197046-C-CAA 12×A***
23421043-ATT-A,ATTT 21259157-ATT-A,ATTT 22×T***
8163098-C-A 8295057-C-A ***
22229298-C-A 20067412-C-A DYZ19 ***
9462074-A-G 9624465-A-G ***
9117179-G-T 9279570-G-T ***
4862644-C-A 4994603-C-A ***
10971929-T-A,C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B210885960662178652967764177
Used in age calculations960662178652967764177
Counts of SNPs2824
Variant counts last updated 2018-06-18 20:54:45.



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