Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > BY4086 > FGC17436 > Z17693 > S7897 > A495 > S7898 > S15280 > BY19966 > Y103976

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B81885
18683522-G-GA 16571642-G-GA 10×AA*
24271361-A-G 22125214-A-G P3_b1 A*
9826449-T-G 9988840-T-G BY81240 YY+
17903920-A-G 15792040-A-G BY118267 YY+
7716727-A-C 7848686-A-C BY67088 YY+
19005299-C-T 16893419-C-T A14170 YY+
23779103-C-T 21617217-C-T BY147650 Y+
23811575-T-G 21649689-T-G BY147887 Y+
24417803-A-G 22271656-A-G BY149730 Y+
18208419-G-A 16096539-G-A FGC68057 HU451 YY+
15968701-C-T 13856821-C-T BY105194 YY+
6989225-T-G 7121184-T-G BY38569 YY+
28536007-T-TAC 26389860-T-TAC 12×AC*
16263190-A-C 14151310-A-C **
14614781-A-C 12502979-A-C **
14825951-G-A 12714018-G-A **
14825950-T-C 12714017-T-C **
14753121-A-G 12641190-A-G **
14693423-C-A 12581489-C-A **
14689091-C-A 12577157-C-A **
14680138-CT-C 12568204-CT-C **
14661558-C-A 12549623-C-A **
14627834-C-A 12515902-C-A **
14618840-C-A 12507038-C-A **
14581002-G-T 12469202-G-T **
14846991-A-G 12735057-A-G **
14551621-C-A 12439822-C-A **
14500255-C-A 12388460-C-A **
14491358-C-A 12379555-C-A **
14488596-C-T 12367865-C-T **
14488588-A-G 12367857-A-G **
14488587-C-T 12367856-C-T **
14488582-T-C 12367851-T-C **
14488575-T-G 12367844-T-G **
14328356-C-A 12207650-C-A **
14846990-C-A 12735056-C-A **
14858315-C-A 12746381-C-A **
16053480-G-A 13941600-G-A **
16355072-G-T 14243192-G-T **
16037146-A-G 13925266-A-G **
16270808-G-T 14158928-G-T **
16270854-G-T 14158974-G-T **
15676827-C-A 13564947-C-A **
15620317-C-A 13508437-C-A **
15495460-C-CAA 13383580-C-CAA 16×A**
16275543-C-A 14163663-C-A **
15443436-G-T 13331556-G-T **
15418574-A-T 13306694-A-T **
16701666-T-G 14589786-T-G **
15133337-C-A 13021424-C-A **
15333900-A-T 13222018-A-T **
16704660-G-T 14592780-G-T **
15279452-G-A 13167551-G-A **
15218715-G-A 13106801-G-A **
14270594-A-T 12149888-A-T **
16739425-C-A 14627545-C-A **
16848672-C-A 14736792-C-A **
15171029-T-C 13059115-T-C **
15163423-G-A 13051509-G-A **
14272494-C-A 12151788-C-A **
13909933-C-A 11789227-C-A **
14146198-TA-T 12025492-TA-T 8×A**
11001204-C-A **
11011662-C-T **
11011656-C-A **
11011654-A-C **
11010412-T-C **
11010406-T-C **
11010404-T-A **
11010401-TA-T **
11010375-T-C **
11010370-T-C **
11010366-C-A **
11010365-T-C **
10991849-C-A **
11012279-C-G **
10991456-C-T **
10991125-T-C **
10989872-A-G **
10989394-T-A **
10989369-T-A **
10984906-T-C **
10984905-G-A **
10979582-T-A **
10976969-A-G **
10973642-C-A **
10973108-T-C **
10973097-A-C **
11011666-C-A **
11012280-T-C **
14062043-AAT-A 11941337-AAT-A **
13309740-T-A 11154064-T-A **
16905682-C-A 14793802-C-A **
13860699-G-T 11739993-G-T **
13722278-G-A 11566602-G-A **
13696401-T-A 11540725-T-A **
13696373-T-A 11540697-T-A **
13696369-G-C 11540693-G-C **
13526289-A-G 11370613-A-G **
13475489-T-C 11319813-T-C **
13466266-C-A 11310590-C-A **
13461729-TCACAAAGC-T 11306053-TCACAAAGC-T **
13328685-G-T 11173009-G-T **
13309738-A-C 11154062-A-C **
11012285-T-C **
13253218-CT-C 11097542-CT-C **
13224580-A-C 11068904-A-C **
11026053-C-CATTTT **
11025906-T-A **
11025878-T-A **
11025851-T-A **
11016876-G-T **
11016525-C-A **
11015468-T-G **
11013559-A-T **
11012313-C-T **
11012294-A-G **
16888713-G-A 14776833-G-A **
17369376-C-A 15257496-C-A **
16967442-T-A 14855562-T-A **
22729497-C-A 20567611-C-A **
23412218-G-A 21250332-G-A **
23412010-C-A 21250124-C-A **
23368173-A-G 21206287-A-G **
23126777-C-A 20964891-C-A **
23062316-C-A 20900430-C-A **
23011051-A-C 20849165-A-C **
23011044-T-G 20849158-T-G **
23002801-C-A 20840915-C-A **
22979441-A-C 20817555-A-C **
22775110-C-A 20613224-C-A **
22661015-C-A 20499129-C-A **
23625569-C-A 21463683-C-A **
22268069-G-T 20106183-G-T DYZ19 **
22055344-G-A 19893458-G-A **
22055320-C-A 19893434-C-A **
21691020-C-A 19529134-C-A **
21673055-C-A 19511169-C-A **
21627075-C-A 19465189-C-A **
21402179-C-A 19240293-C-A **
21382105-C-A 19220219-C-A **
21361864-C-G 19199978-C-G **
21355539-C-A 19193653-C-A **
21320503-A-G 19158617-A-G **
23475487-G-A 21313601-G-A **
23792403-G-T 21630517-G-T **
21285097-C-A 19123211-C-A **
28608730-C-A 26462583-C-A **
56851464-T-C **
56845465-AG-A **
56838313-C-T **
56756871-A-C **
28818154-C-A 26672007-C-A **
28806386-G-C 26660239-G-C **
28803679-T-A 26657532-T-A **
28782264-C-A 26636117-C-A **
28754972-T-A 26608825-T-A **
28734328-C-A 26588181-C-A **
28699847-G-A 26553700-G-A **
28549253-G-T 26403106-G-T **
23802046-G-A 21640160-G-A **
28531978-C-A 26385831-C-A **
28510974-C-A 26364827-C-A **
28506226-A-C 26360079-A-C **
28506220-T-A 26360073-T-A **
28484365-A-C 26338218-A-C **
27447462-G-GTT 25301315-G-GTT P1_Y2 **
26248851-G-T 24102704-G-T P1_Y1 **
26204687-G-T 24058540-G-T P1_Y1 **
24910811-A-T 22764664-A-T g1 **
23837149-G-T 21675263-G-T **
23802105-AAG-A 21640219-AAG-A **
21306618-G-T 19144732-G-T **
21276783-T-A 19114897-T-A **
17063880-G-A 14952000-G-A CTS6700 **
18184802-G-T 16072922-G-T **
19183814-CTTTTT-C 17071934-CTTTTT-C 28×T**
18969330-C-G 16857450-C-G **
18963736-C-CT 16851856-C-CT **
18901247-C-A 16789367-C-A **
18730349-C-A 16618469-C-A **
18723250-C-A 16611370-C-A **
18712837-G-T 16600957-G-T **
18427767-A-C 16315887-A-C P6_Dst **
18382651-A-T 16270771-A-T P6_Gap **
18346587-C-A 16234707-C-A P6_Prx **
18184787-G-T 16072907-G-T **
19271287-C-A 17159407-C-A **
18173200-T-C 16061320-T-C **
17885755-A-G 15773875-A-G **
17714999-C-A 15603119-C-A **
17714919-A-G 15603039-A-G **
17627970-C-A 15516090-C-A **
17622749-C-A 15510869-C-A **
17605540-C-A 15493660-C-A **
17548105-C-A 15436225-C-A **
10973082-T-C **
17353618-G-T 15241738-G-T **
17177247-C-A 15065367-C-A **
19246161-C-A 17134281-C-A **
19299097-C-A 17187217-C-A **
21238730-G-T 19076844-G-T **
20506388-T-A 18344502-T-A P5_Dst **
21238720-G-T 19076834-G-T **
21238718-T-G 19076832-T-G **
21225027-G-T 19063141-G-T **
21202530-C-A 19040644-C-A **
21125690-T-A 18963804-T-A **
21076973-G-T 18915087-G-T **
20778638-G-A 18616752-G-A P4_Prx **
20620873-A-C 18458987-A-C P4_Prx **
20620871-T-G 18458985-T-G P4_Prx **
20620867-C-A 18458981-C-A P4_Prx **
20620855-G-T 18458969-G-T P4_Prx **
20506385-G-T 18344499-G-T P5_Dst **
19337633-CTTTTTT-C 17225753-CTTTTTT-C 22×T**
19963798-GTGT-G 17851918-GTGT-G P5_Prx **
19701522-A-G 17589642-A-G P5_Prx **
19600462-G-T 17488582-G-T P5_Prx **
19558406-A-T 17446526-A-T **
19542241-T-A 17430361-T-A **
19482277-C-A 17370397-C-A **
19466893-C-A 17355013-C-A **
19412787-C-A 17300907-C-A **
19404384-C-A 17292504-C-A **
19394059-CTTTTTTTTTTTTTTTTTTTTT-C 17282179-CTTTTTTTTTTTTTTTTTTTTT-C 37×T**
19377621-C-A 17265741-C-A **
10973095-C-T **
11010359-C-CA **
10973077-C-G **
4563279-A-G 4695238-A-G **
5630121-G-T 5762080-G-T **
5598406-C-CTT 5730365-C-CTT 10×T**
5401316-G-T 5533275-G-T **
5379391-G-T 5511350-G-T **
5278134-C-A 5410093-C-A **
5218594-A-T 5350553-A-T **
5060219-C-A 5192178-C-A **
4957684-C-A 5089643-C-A **
4957198-C-A 5089157-C-A **
4770442-G-T 4902401-G-T **
4540521-T-A 4672480-T-A **
5858414-C-A 5990373-C-A **
4540503-A-T 4672462-A-T **
4338402-G-T 4470361-G-T **
4257544-C-A 4389503-C-A **
4244800-ATTT-A 4376759-ATTT-A 10×T**
4116014-C-A 4247973-C-A **
4115925-C-A 4247884-C-A **
4080871-T-A 4212830-T-A **
4065407-C-A 4197366-C-A **
3854053-G-C 3986012-G-C **
3725767-C-A 3857726-C-A **
3688950-C-A 3820909-C-A **
5742798-C-A 5874757-C-A **
6310466-T-A 6442425-T-A IR3_Dst **
3347573-C-A 3479532-C-A **
7322652-C-A 7454611-C-A **
8981024-G-T 9143415-G-T **
8865830-T-C 8997789-T-C **
8807018-T-A 8938977-T-A **
8671373-G-T 8803332-G-T **
8379651-A-T 8511610-A-T **
8154134-CTTTTTT-C 8286093-CTTTTTT-C 16×T**
8076136-G-T 8208095-G-T **
8074280-G-T 8206239-G-T **
7964735-A-C 8096694-A-C **
7782849-C-A 7914808-C-A **
7753126-C-A 7885085-C-A **
7216584-A-T 7348543-A-T **
6310518-G-T 6442477-G-T IR3_Dst **
10973053-C-T **
7134033-C-A 7265992-C-A **
7123625-C-A 7255584-C-A **
7106447-A-G 7238406-A-G **
7086696-A-T 7218655-A-T **
6791661-A-G 6923620-A-G **
6699574-C-A 6831533-C-A **
6694200-C-A 6826159-C-A **
6583098-G-T 6715057-G-T **
6401002-G-C 6532961-G-C **
6328305-GCACA-G 6460264-GCACA-G IR3_Dst **
3592976-G-T 3724935-G-T **
3123011-A-T 3254970-A-T **
9371498-ATATG-A 9533889-ATATG-A **
10889536-G-T **
13858618-C-A 11737912-C-A **
19610393-C-A 17498513-C-A P5_Prx **
11650410-C-A **
10751126-CTATCCTCCAT-C **
6757623-C-A 6889582-C-A **
10889503-A-C **
10859097-CTTCTT-C **
11028234-C-A **
19376239-C-A 17264359-C-A **
10783881-C-T **
11028252-C-A **
10766276-G-C **
10889563-A-C **
10889494-A-G **
10889482-C-A **
10889478-T-C **
13722297-AGGAATGGAAT-A 11566621-AGGAATGGAAT-A 7×GGAAT**
16598984-C-CA 14487104-C-CA 25×A**
28567993-C-A 26421846-C-A **
59003562-C-T 56857415-C-T **
13607417-G-T 11451741-G-T Z5374 **
9240714-C-T 9403105-C-T **
3482590-C-CA 3614549-C-CA 22×A**
15061661-C-A 12949753-C-A **
10790509-C-CA **
2948834-A-T 3080793-A-T **
10824161-C-G **
2818247-C-T 2950206-C-T **
2700147-C-A 2832106-C-A **
16913422-CAAAAA-C 14801542-CAAAAA-C 21×A**
10746908-A-G **
8119489-GTTT-G 8251448-GTTT-G 14×T**
15047979-C-A 12936070-C-A **
10967550-T-A **
28234432-A-C 26088285-A-C P1_b4 **
21468607-C-CT 19306721-C-CT 10×T**
8428972-T-A 8560931-T-A **
14096618-T-TAA 11975912-T-TAA 17×A**
17056463-C-A 14944583-C-A **
10993195-CT-C **
20506394-G-C 18344508-G-C P5_Dst **
20506371-T-G 18344485-T-G P5_Dst **
56851468-G-A **
10868763-C-T **
19509702-C-A 17397822-C-A **
10950549-T-C **
10824119-A-C **
10973592-C-T **
15401870-TA-T 13289990-TA-T 9×A**
10993234-A-G **
10993204-A-T **
9169590-G-A 9331981-G-A **
7196273-C-A 7328232-C-A **
9399866-C-G 9562257-C-G **
10781306-T-C **
10824152-C-A **
10824145-TCC-T **
10824143-A-AAT **
10809313-A-C **
10804905-C-T **
10804831-A-T **
10799232-C-A **
10792320-G-T **
10792317-C-T **
10787327-C-T **
10786795-G-T **
10777793-T-TTCTGC **
10841117-C-A **
10775039-T-A **
10770100-G-A FT73138 **
10767451-C-A **
10767103-C-A **
10766288-ATTT-A **
10764549-TCAC-T **
10764547-T-TTG **
10764518-C-CCCTTG **
10764510-A-AG **
10764504-C-T **
10759929-A-T **
10837277-T-G **
10859093-A-C **
10753322-C-A **
10945490-C-G **
10969986-T-G **
10968591-C-A **
10955575-C-T **
10955021-C-A **
10953896-C-A **
10945507-T-A **
10945505-T-C **
10945503-T-G **
10945498-C-T **
10945492-C-A **
10945491-T-C **
10945486-C-A **
10868215-T-A **
10942798-T-C **
10929607-C-A **
10926765-T-G **
10912604-A-C **
10899014-C-A **
10892049-C-A **
10889572-C-A **
10889481-G-T **
10888446-C-A **
10881992-C-A **
10881944-C-A **
10868231-T-A **
10757263-C-A **
10777433-G-A **
56857352-C-T **
10653332-T-G **
9672332-G-T 9834723-G-T IR3_Prx **
9553695-G-T 9716086-G-T IR3_Prx **
10653466-C-T **
9553688-A-T 9716079-A-T IR3_Prx **
10653469-A-C **
9769395-C-A 9931786-C-A **
10655090-A-ACTCTGTTCCT **
10655103-C-A **
10664450-A-C **
9553678-A-T 9716069-A-T IR3_Prx **
9891200-C-A 10053591-C-A **
9956408-C-A 10118799-C-A **
10653351-T-G **
9553676-C-A 9716067-C-A IR3_Prx **
10010634-G-T 10173025-G-T **
9553675-C-G 9716066-C-G IR3_Prx **
10746851-TG-T **
9553652-A-T 9716043-A-T IR3_Prx **
10672250-A-C **
10684758-A-G **
10685760-T-C **
10685771-C-T **
10746880-T-G **
10746198-C-A **
9553660-G-T 9716051-G-T IR3_Prx **
10746482-C-A **
10653329-T-G **
24439664-C-A 22293517-C-A ***
15056955-T-TTA 12945047-T-TTA ***
17050084-CTT-C 14938204-CTT-C 14×T***
15209530-ATT-A,AT 13097616-ATT-A,AT 16×T***
23544846-CTTTT-C 21382960-CTTTT-C 15×T***
23555963-C-A 21394077-C-A ***
17189373-AAG-A 15077493-AAG-A ***
17256854-CTTTT-C 15144974-CTTTT-C 14×T***
7625267-C-A 7757226-C-A ***
58979390-CTCCTT-C 56833243-CTCCTT-C ***
8157563-T-C 8289522-T-C ***
11003215-TCTCCA-T ***
3716212-G-A 3848171-G-A ***
15987074-A-T 13875194-A-T A848FGC19437 ***
10971924-T-A,C ***
17312504-GA-G 15200624-GA-G 10×A***
56830269-ATTCCT-A,ATTACT ***
15583702-C-CA,CAA 13471822-C-CA,CAA 13×A***
28763027-C-A 26616880-C-A ***
21487036-T-TA 19325150-T-TA 8×A***
15254662-C-A 13142748-C-A ***
10985093-C-G ***
28549876-C-A 26403729-C-A ***
10986921-A-C,G ***
17678622-T-C 15566742-T-C ***
16841894-C-A 14730014-C-A ***
16878346-C-A 14766466-C-A ***
12786501-CTTTTT-C,CTTTT 16×T***
10748194-T-C ***
23382494-C-A 21220608-C-A ***
18907673-G-T 16795793-G-T ***
13471983-G-A 11316307-G-A ***
2766088-C-A 2898047-C-A ***
2805529-CAAAAAAA-C 2937488-CAAAAAAA-C 22×A***
10655973-A-C ***
21235227-CAAAA-C,CAAA 19073341-CAAAA-C,CAAA 19×A***
9211368-C-G 9373759-C-G ***
6117610-C-T 6249569-C-T ***
10668943-G-T ***
22430145-C-A 20268259-C-A DYZ19 ***
11643699-G-GC ***
11648714-C-T ***
11649290-G-T ***
13823219-AATGGGATGGG-A 11702513-AATGGGATGGG-A 9×ATGGG***
19308322-TAA-T,TA 17196442-TAA-T,TA 12×A***
5274456-C-A 5406415-C-A ***
19491258-C-A 17379378-C-A ***
4925654-C-A 5057613-C-A ***
10790344-C-T ***
21508589-C-A 19346703-C-A ***
17678621-CTTTTTT-C,CTTTTT 15566741-CTTTTTT-C,CTTTTT 26×T***
6792628-CAAAAA-C,CAAAA 6924587-CAAAAA-C,CAAAA 18×A***
23310417-C-A 21148531-C-A ***
23148746-CAA-C,CA 20986860-CAA-C,CA 14×A***
23142036-G-T 20980150-G-T ***
23142018-G-T 20980132-G-T ***
19411041-C-A 17299161-C-A ***
6890291-G-GTT 7022250-G-GTT 13×T***
6815697-A-T 6947656-A-T ***
18070191-CT-C,CTT 15958311-CT-C,CTT 15×T***
10819334-C-T ***
14836436-C-A 12724503-C-A ***
22710641-TA-T,TAA 20548755-TA-T,TAA 10×A***
10819333-T-C ***
22659782-T-G 20497896-T-G ***
22559137-C-A 20397251-C-A ***
10815896-ATTCCT-A ***
10807264-A-ATTCCT ***
6767907-G-T 6899866-G-T ***
6734472-C-A 6866431-C-A ***
2836350-CT-C,CTT 2968309-CT-C,CTT 19×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B81885921356775359057451300
Used in age calculations921356775359057451300
Counts of SNPs710
Variant counts last updated 2019-08-26 22:58:18.



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