Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > A287

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
133827
19888941-C-T 17777061-C-T P5_Prx A*
22252725-A-T 20090839-A-T DYZ19 A*
22254357-A-T 20092471-A-T DYZ19 A*
28816697-C-T 26670550-C-T A*
28811168-G-C 26665021-G-C A*
19623949-A-G 17512069-A-G P5_Prx A*
22305076-A-T 20143190-A-T DYZ19 A*
22313867-G-A 20151981-G-A BY21014 DYZ19 A*
19830047-C-A 17718167-C-A P5_Prx A*
19849508-G-A 17737628-G-A P5_Prx A*
17566190-A-T 15454310-A-T BY115766 YY+
18662991-G-A 16551111-G-A Y73822 YY+
19067753-A-G 16955873-A-G BY125972 YY+
23486241-A-G 21324355-A-G BY145664 YY+
22903081-C-T 20741195-C-T BY141564 YY+
22861719-A-C 20699833-A-C BY141310 YY+
22474240-T-A 20312354-T-A DYZ19 +
20129497-A-C 18017617-A-C P5_Dst +
22506577-G-T 20344691-G-T BY44065 DYZ19 +
22484575-G-C 20322689-G-C DYZ19 +
18070191-C-A 15958311-C-A Y21747 YY15×T+
22470730-T-A 20308844-T-A DYZ19 +
22458239-T-A 20296353-T-A DYZ19 +
2829926-A-C 2961885-A-C BY56708 YY+
2659770-T-C 2791729-T-C BY55705 YY+
21192935-C-T 19031049-C-T BY131014 YY+
22203212-C-T 20041326-C-T BY138434 YY+
18105485-T-A 15993605-T-A BY120061 YY+
17949873-T-C 15837993-T-C BY118664 YY+
18028915-C-T 15917035-C-T Y+
21876763-A-C 19714877-A-C BY136118 YY+
13670693-C-T 11515017-C-T BY54304 +
14197309-C-T 12076603-C-T BY93749 YY+
14408799-T-G 12288097-T-G BY95550 YY+
7035274-G-T 7167233-G-T BY62945 YY+
6995052-C-T 7127011-C-T BY62794 YY+
15064380-A-G 12952472-A-G BY99519 YY+
15438283-G-GA 13326403-G-GA 8×A+
15817659-T-C 13705779-T-C BY49195 YY+
15822835-G-A 13710955-G-A BY104354 YY+
16223774-G-T 14111894-G-T BY106085 YY+
8999550-C-G 9161941-C-G BY77170 Y+
16459301-G-A 14347421-G-A BY107982 YY+
8187372-T-C 8319331-T-C BY70543 YY+
8081406-A-T 8213365-A-T BY69784 YY+
8051297-G-T 8183256-G-T PR4813 YY+
8050417-C-A 8182376-C-A BY69615 YY+
17090217-G-A 14978337-G-A BY112217 YY+
7777020-C-G 7908979-C-G BY67539 YY+
7681008-C-G 7812967-C-G FGC29661 YY+
28428748-C-T 26282601-C-T P1_gr2 +
7055046-C-T 7187005-C-T BY63070 YY+
26334942-C-G 24188795-C-G BY53468 P1_Y1 +
21876600-G-C 19714714-G-C BY136116 YY+
15021237-T-TTA 12909326-T-TTA *
2802718-C-CA 2934677-C-CA 11×A*
7195501-CTGTG-C 7327460-CTGTG-C 17×TG*
15255769-GGTGTGT-G 13143855-GGTGT-G 24×GT*
20821939-A-AGT 18660053-A-AGT P4_Gap 16×GT*
22302854-G-T 20140968-G-T DYZ19 *
21939522-C-A 19777636-C-A **
11643608-G-T **
13857155-T-A 11736449-T-A **
11677467-CGAATG-C **
11652878-A-T **
11652839-G-T **
11652761-T-A **
13720836-T-A 11565160-T-A **
13720837-G-T 11565161-G-T **
14022942-C-A 11902236-C-A **
13710373-A-T 11554697-A-T **
13691845-C-A 11536169-C-A **
13691843-C-A 11536167-C-A **
13573369-A-T 11417693-A-T **
13472100-G-T 11316424-G-T **
13453741-G-A 11298065-G-A **
13976489-G-A 11855783-G-A **
56850776-G-T **
14040920-C-A 11920214-C-A **
14517308-C-T 12405509-C-T **
28808588-T-G 26662441-T-G **
15392206-T-A 13280326-T-A **
15355066-C-A 13243185-C-A **
28812504-A-C 26666357-A-C **
14570756-ATTTTTTT-A 12458956-ATTTTTTT-A 22×T**
14518342-C-A 12406543-C-A **
14502019-C-A 12390224-C-A **
13301317-C-A 11145641-C-A **
14421694-C-A 12300969-C-A **
56734794-T-C **
14398239-GATA-G 12277535-GATA-G **
14281132-C-A 12160426-C-A **
14272794-C-A 12152088-C-A **
14239315-C-A 12118609-C-A **
14239303-C-A 12118597-C-A **
13330276-C-A 11174600-C-A **
13226402-A-T 11070726-A-T **
13226408-C-A 11070732-C-A **
10958278-A-C **
10995751-A-T **
10989158-A-C **
10987769-T-A **
10978779-ATTCCT-A **
10974122-C-A **
10973562-G-T **
10973552-AATTTC-A **
10958263-A-C **
10997209-G-T **
10958262-A-C **
10958260-A-T **
10953633-A-G **
10953626-C-T **
10953617-C-T **
10953604-A-T **
10943740-T-C **
10995962-G-T **
11001386-GCATTC-G **
28808577-C-T 26662430-C-T **
11026170-A-T **
13198013-G-T 11042337-G-T FGC69524 **
11033209-T-A **
11033173-C-CAATAA **
11033173-C-G **
11033163-C-T **
11033154-A-ATTCGGGTCCT **
11028027-TTCCAC-T **
11025588-G-T **
11001401-C-A **
11020156-C-G **
11018391-G-T **
11017529-C-A **
11013198-TATTCCATTCC-T **
11011622-CTATT-C **
11011610-C-T **
11011609-A-G **
11004715-G-A **
15608146-C-A 13496266-C-A **
15864082-C-A 13752202-C-A **
28698551-A-C 26552404-A-C **
19223122-G-C 17111242-G-C **
23438972-C-A 21277086-C-A **
19552149-C-A 17440269-C-A **
19510326-G-T 17398446-G-T **
19504174-G-T 17392294-G-T **
19449286-G-T 17337406-G-T **
19272166-C-A 17160286-C-A **
19223128-G-C 17111248-G-C **
19129499-C-A 17017619-C-A **
22587978-C-A 20426092-C-A **
19122076-C-A 17010196-C-A **
23521027-G-T 21359141-G-T **
19052339-C-A 16940459-C-A **
18951317-T-G 16839437-T-G **
18902757-T-C 16790877-T-C **
18902379-A-C 16790499-A-C **
18867339-CTTTTTTTTTT-C 16755459-CTTTTTTTTTT-C 24×T**
23007055-T-A 20845169-T-A **
22587955-A-T 20426069-A-T **
18530997-C-T 16419117-C-T P6_Dst **
21422190-C-A 19260304-C-A **
22199444-A-G 20037558-A-G **
21578479-G-T 19416593-G-T **
21477008-C-A 19315122-C-A **
21473739-A-T 19311853-A-T **
21457260-A-T 19295374-A-T **
21427741-C-A 19265855-C-A **
21427345-C-A 19265459-C-A **
22297871-T-C 20135985-T-C DYZ19 **
19949626-G-T 17837746-G-T P5_Prx **
20774832-C-T 18612946-C-T P4_Prx **
20700666-T-A 18538780-T-A P4_Prx **
20700664-C-A 18538778-C-A P4_Prx **
20376642-T-C 18214756-T-C P5_Dst **
22303591-G-A 20141705-G-A DYZ19 **
22537136-A-T 20375250-A-T **
20101757-C-A 17989877-C-A P5_Dst **
23952699-T-A 21806552-T-A **
18343602-C-T 16231722-C-T P6_Prx 25×T**
22048522-A-G 19886636-A-G **
16279204-A-G 14167324-A-G **
28549264-G-T 26403117-G-T **
28633058-C-A 26486911-C-A **
28633233-C-A 26487086-C-A **
28644318-T-A 26498171-T-A **
16305793-C-T 14193913-C-T **
16305771-A-AAAAC 14193891-A-AAAAC **
16305753-G-A 14193873-G-A **
28660675-C-A 26514528-C-A **
16588338-C-A 14476458-C-A **
16245452-A-C 14133572-A-C **
28688326-C-A 26542179-C-A **
16176618-T-A 14064738-T-A **
16049004-C-A 13937124-C-A **
16027785-G-A 13915905-G-A **
16017192-C-A 13905312-C-A **
15975244-G-T 13863364-G-T **
16577677-C-A 14465797-C-A **
28515417-TC-T 26369270-TC-T **
24406247-C-T 22260100-C-T **
17618342-G-T 15506462-G-T **
25990617-TC-G 23844470-TC-G P1_Y1 **
25995056-C-A 23848909-C-A P1_Y1 **
26099745-C-A 23953598-C-A P1_Y1 **
17934036-G-T 15822156-G-T **
17926534-CAAAA-C 15814654-CAAAA-C 25×A**
17813545-G-A 15701665-G-A **
17644116-G-T 15532236-G-T FGC64225 **
26730206-AAAG-A 24584059-AAAG-A P1_g2 **
28491976-G-T 26345829-G-T **
10939075-C-T **
17500899-A-T 15389019-A-T **
17464801-G-T 15352921-G-T **
17440621-C-G 15328741-C-G **
17385472-C-A 15273592-C-A **
17362744-C-A 15250864-C-A **
28485844-G-C 26339697-G-C **
10939171-T-G **
10943739-T-G **
10937927-C-A **
4507077-C-A 4639036-C-A **
5678533-G-T 5810492-G-T **
5249156-C-A 5381115-C-A **
5084312-G-T 5216271-G-T **
4995983-GTC-G 5127942-GTC-G **
4993562-G-T 5125521-G-T **
4868289-G-T 5000248-G-T **
4868231-C-T 5000190-C-T **
4630883-G-T 4762842-G-T **
4624214-G-A 4756173-G-A **
4366153-G-GTC 4498112-G-GTC **
5814501-A-G 5946460-A-G **
4326419-G-A 4458378-G-A **
4256925-C-A 4388884-C-A **
4096476-C-A 4228435-C-A **
3883321-A-G 4015280-A-G **
3831390-T-C 3963349-T-C **
3591241-C-A 3723200-C-A **
3523404-C-A 3655363-C-A **
3158892-C-A 3290851-C-A **
2699702-AAAAGAG-A 2831661-AAAAGAG-A **
5690003-C-A 5821962-C-A **
5829763-C-A 5961722-C-A **
10880308-A-ACTCT **
7109453-C-A 7241412-C-A **
8678621-A-G 8810580-A-G **
8344221-G-T 8476180-G-T **
8273781-ATTATT-A 8405740-ATTATT-A **
7783494-A-C 7915453-A-C **
7783403-C-A 7915362-C-A **
7348664-G-A 7480623-G-A **
7156802-G-A 7288761-G-A **
10937669-CA-C **
7135441-A-G 7267400-A-G **
7050266-T-G 7182225-T-G **
5851942-C-G 5983901-C-G **
6934820-G-A 7066779-G-A **
6826663-A-T 6958622-A-T **
6786878-C-CT 6918837-C-CT 8×T**
6765991-A-C 6897950-A-C **
6699534-C-A 6831493-C-A **
6535358-C-A 6667317-C-A **
6513547-T-C 6645506-T-C **
6487751-G-T 6619710-G-T **
6459757-T-C 6591716-T-C **
6056576-G-T 6188535-G-T **
10936244-C-T **
19979865-T-C 17867985-T-C P5_Prx **
9125505-G-T **
4222745-C-CA 4354704-C-CA 9×A**
10958267-G-T **
10887970-T-TGTA **
10953615-G-T **
28556382-T-G 26410235-T-G **
27499310-C-CA 25353163-C-CA P1_Y2 30×A**
6403579-C-A 6535538-C-A **
10023819-T-C 10186210-T-C **
4539205-CA-C 4671164-CA-C 11×A**
14409003-CTT-C 12288301-CT-C 20×T**
13484692-C-G 11329016-C-G **
13717918-T-A 11562242-T-A **
13976485-C-T 11855779-C-T **
19126436-C-CAAAAAA 17014556-C-CAAAAAA 25×A**
13859380-A-T 11738674-A-T **
25990620-T-G 23844473-T-G P1_Y1 **
13484687-G-T 11329011-G-T **
13484675-C-A 11328999-C-A **
28721499-C-CA 26575352-C-CA 18×A**
13559307-C-T 11403631-C-T **
58833950-C-T 56756921-G-A **
11033179-A-T **
13256635-GTT-G 11100959-GTT-G 16×T**
10656835-A-AT **
10824186-C-G **
10656834-T-C **
11014318-G-T **
10872972-C-A **
10932639-G-T **
6816711-G-T 6948670-G-T **
24290819-C-A 22144672-C-A P3_t1 **
13484702-A-T 11329026-A-T **
13484683-C-G 11329007-C-G **
13484651-C-T 11328975-C-T **
10937682-T-C **
14181588-G-T 12060882-G-T **
10937667-C-CA **
28545694-TAC-T 26399547-TAC-T **
10764511-T-C **
28797853-G-A 26651706-G-A **
27733780-C-A 25587633-C-A P1_Y2 **
10888034-T-C **
10825256-G-T **
18329043-CTTTT-C 16217163-CTTTT-C P6_Prx 17×T**
10989136-C-G **
16305824-C-T 14193944-C-T **
8911585-G-T 9043544-G-T **
31647-C-A **
9172699-G-A 9335090-G-A **
10824173-A-G **
10869511-T-A **
10869507-T-C **
10858880-C-A **
10851953-C-A **
10851949-A-T **
10831770-T-A **
10824201-C-T **
10824197-C-A **
10824178-A-T **
10814978-C-A **
10869842-C-A **
10799561-ATTCTATTTCATTCCT-A **
10799530-TTCA-T **
9601586-C-T 9763977-C-T IR3_Prx 16×T**
10799518-C-TA **
10799515-T-A **
10799492-A-G **
10797422-A-T **
10795305-C-A **
10792813-C-T **
10869514-G-A **
10872979-T-A **
10787307-T-C **
10936198-GTTCCATTCCT-G **
10937661-A-T **
10936721-C-T **
10936713-C-A **
10936677-TG-T **
10936674-C-CT **
10936668-A-C **
10936664-A-T **
10936247-C-CACTCA **
10936224-C-T **
10935631-C-T **
10878043-A-T **
10935554-TTCCAG-T **
10932974-A-C **
10929750-T-G **
10895876-C-G **
10895862-A-C **
10895859-T-A **
10885193-A-T **
10885156-CT-C **
10884292-C-A **
10791311-C-A **
10799520-CA-C **
10780834-C-A **
10656845-T-C **
10744659-C-A **
10689021-TC-T **
10687020-T-C **
10683235-C-T **
10679146-C-A **
10678553-C-A **
10671680-C-A **
10773846-G-T **
10656831-T-C **
10757342-CT-C **
10656829-T-A **
10648113-A-T **
10648102-C-T **
10648098-A-G **
10648083-A-G **
10023805-G-GTC 10186196-G-GTC **
10023805-G-C 10186196-G-C **
10018009-T-C 10180400-T-C **
9887052-C-T 10049443-C-T **
10755047-C-T **
10663659-C-CTCCAA **
10764540-AT-A **
10760284-G-C **
10760290-CGAATG-T **
10760302-C-T **
10760304-A-T **
10764514-C-T **
10772285-C-A **
10764544-C-CGGGTTT **
10764530-A-T **
10764543-C-T **
13484653-G-C 11328977-G-C ***
7203398-C-A 7335357-C-A ***
19479759-C-A 17367879-C-A ***
23389531-CTTTTT-C 21227645-CTTTTT-C 18×T***
13809203-GGAATA-G 11688497-GGAATA-G ***
23343498-C-CT 21181612-C-CT 10×T***
7270276-CTTTTTT-C 7402235-CTTTTTT-C 25×T***
3990664-CAA-C 4122623-CAA-C 18×A***
23471038-C-CA 21309152-C-CA 19×A***
10954533-A-C ***
17375948-G-T 15264068-G-T ***
13809202-A-T 11688496-A-T ***
58977844-A-C 56831697-A-C ***
18964149-CTG-C 16852269-CTG-C 10×TG***
13809189-A-G 11688483-A-G ***
2862892-CAAAA-C 2994851-CAAAA-C 18×A***
8008793-C-A 8140752-C-A ***
13719134-T-A 11563458-T-A ***
17662167-GTAGATAGATAGATAGA-G 15550287-GTAGATAGATAGATAGA-G 16×TAGA***
15619797-C-A 13507917-C-A ***
13719490-TA-T 11563814-TA-T ***
17597154-CTTTT-C 15485274-CTTTT-C 20×T***
22669027-G-T 20507141-G-T ***
21990529-C-A 19828643-C-A ***
22314440-T-C 20152554-T-C DYZ19 ***
22339870-T-C 20177984-T-C DYZ19 ***
10682476-C-G ***
21558700-A-ATT 19396814-A-ATT 10×T***
14686074-C-A 12574140-C-A ***
13719487-A-AT 11563811-A-AT ***
15151502-CAAAAAAAAA-C 13039589-CAAAAAAAAA-C 23×A***
9702867-AACACAC-A 9865258-AACACAC-A IR3_Prx 19×AC***
10895836-C-G ***
10658542-C-T ***
13719485-G-T 11563809-G-T ***
10895840-C-G ***
23277771-T-A 21115885-T-A ***
23395638-C-A 21233752-C-A ***
10895845-C-A ***
10895850-C-T ***
10657329-C-T ***
18978793-C-T 16866913-C-T ***
24406062-T-G 22259915-T-G ***
17465029-C-A 15353149-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 133827964329878895517785930
Used in age calculations964329878895517785930
Counts of SNPs3333
Variant counts last updated 2018-06-18 21:16:29.



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