Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > CTS1751 > Z17966 > Z17969

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N89514
6244456-C-CACACAT 6376415-C-CACACAT IR3_Dst A*
28817370-G-T 26671223-G-T A*
6308050-G-GCACA 6440009-G-GCACA IR3_Dst 9×CAA*
28816581-G-A 26670434-G-A A*
19845702-C-A 17733822-C-A P5_Prx A*
25929213-C-T 23783066-C-T P1_Y1 A*
19819296-A-G 17707416-A-G P5_Prx A*
17458974-G-A 15347094-G-A BY114939 YY+
22788446-T-A 20626560-T-A BY140777 YY+
8498759-T-G 8630718-T-G BY73440 YY+
8405426-C-T 8537385-C-T BY72401 YY+
18777030-G-C 16665150-G-C BY123826 YY+
19113001-G-A 17001121-G-A BY126372 YY+
7589341-G-A 7721300-G-A BY66096 YY+
23156237-G-T 20994351-G-T BY143452 Y+
14336567-C-T 12215862-C-T BY95019 YY+
13706690-A-T 11551014-A-T BY89262 +
22567141-G-A 20405255-G-A BY139103 YY+
22477542-C-T 20315656-C-T DYZ19 +
6702841-G-C 6834800-G-C BY60825 YY+
22229797-C-A 20067911-C-A DYZ19 +
14094249-A-G 11973543-A-G BY92948 YY+
21070383-G-A 18908497-G-A PH4615 YY+
21977150-A-AT 19815264-A-AT +
21923527-C-T 19761641-C-T BY136478 YY+
21844257-C-A 19682371-C-A BY135876 YY+
3060516-T-G 3192475-T-G BY57380 +
24419671-G-A 22273524-G-A BY149753 Y+
18658872-T-C 16546992-T-C Y102338 YY+
16769869-C-T 14657989-C-T BY109972 YY+
16237316-A-T 14125436-A-T BY106227 YY+
14573713-G-A 12461913-G-A BY96534 YY+
16234315-C-G 14122435-C-G BY106189 YY+
14745196-A-AGG 12633265-A-AGG +
22279930-G-T 20118044-G-T BY33175 DYZ19 *
22432425-C-A 20270539-C-A DYZ19 *
22302625-C-T 20140739-C-T DYZ19 *
15739858-G-T 13627978-G-T **
15786471-T-C 13674591-T-C **
15927920-C-A 13816040-C-A **
15944239-T-A 13832359-T-A **
14067331-C-A 11946625-C-A **
14047807-AT-A 11927101-AT-A **
16005125-A-C 13893245-A-C **
15446785-G-T 13334905-G-T **
15221339-C-A 13109425-C-A **
15402094-A-G 13290214-A-G **
14492785-C-A 12380982-C-A **
14187190-G-A 12066484-G-A 10×A**
15173641-C-A 13061727-C-A **
15060530-C-A 12948622-C-A **
14250517-A-T 12129811-A-T **
14293637-C-CA 12172931-C-CA **
15034906-G-T 12922994-G-T **
14693512-G-T 12581578-G-T **
14585658-T-A 12473858-T-A **
14468822-GAAAA-G 12348091-GAAAA-G 14×A**
14575649-C-T 12463849-C-T **
14510891-C-G 12399096-C-G **
14013890-G-T 11893184-G-T **
14021425-C-A 11900719-C-A **
11646505-A-G **
13938605-C-A 11817899-C-A **
11005085-C-A **
11016582-C-T **
11014093-C-A **
11010311-T-G **
11010307-T-A **
11010298-C-G **
11010273-C-A **
11009329-C-A **
11005571-C-G **
11004410-C-G **
11018677-C-T **
11003216-C-CTAT **
11003214-C-CAT **
11003203-C-G **
11003193-C-A **
21482761-TC-T 19320875-TC-T **
11003162-C-T **
11003157-C-G **
11003153-A-T **
11017338-ACGTTCCATT-A **
11025688-C-A **
13934813-C-A 11814107-C-A **
13560963-C-A 11405287-C-A **
11650777-G-C **
11646532-A-C **
11646509-AC-A **
16432736-C-A 14320856-C-A **
11644717-G-T **
11643724-G-CCACGC **
13707072-G-C 11551396-G-C **
13601126-C-A 11445450-C-A **
13502443-C-T 11346767-C-T **
11026590-T-C **
13461251-T-A 11305575-T-A **
13461192-G-T 11305516-G-T **
13461178-A-G 11305502-A-G **
13461104-G-T 11305428-G-T **
13315642-C-A 11159966-C-A **
13245454-C-A 11089778-C-A **
13223647-G-GGA 11067971-G-GGA **
11031833-A-T **
11031615-C-G **
16240795-C-A 14128915-C-A **
5047690-G-T 5179649-G-T **
16490725-C-A 14378845-C-A **
23507807-C-A 21345921-C-A **
25954194-C-A 23808047-C-A P1_Y1 **
24513311-G-T 22367164-G-T **
24070651-C-A 21924504-C-A P3_b1 **
23997233-G-T 21851086-G-T **
21783836-T-A **
23786352-C-A 21624466-C-A **
23465757-G-A 21303871-G-A **
26454925-A-T 24308778-A-T P1_Y1 **
23152648-T-A 20990762-T-A **
22951229-C-A 20789343-C-A **
22797840-G-T 20635954-G-T **
22484008-G-T 20322122-G-T DYZ19 **
22468383-G-T 20306497-G-T DYZ19 **
22315954-T-C 20154068-T-C DYZ19 **
22300571-C-G 20138685-C-G DYZ19 **
26366585-C-A 24220438-C-A P1_Y1 **
27714429-C-A 25568282-C-A P1_Y2 **
22205046-G-T 20043160-G-T **
28812568-C-G 26666421-C-G **
56839812-C-T **
28815070-A-G 26668923-A-G **
28812615-T-G 26666468-T-G **
28812613-G-GC 26666466-G-GC **
28812612-G-T 26666465-G-T **
28812607-A-G 26666460-A-G **
28812586-T-A 26666439-T-A **
28812567-C-A 26666420-C-A **
27861590-G-A 25715443-G-A P1_Y2 **
28812538-G-GAATGGAGTTC 26666391-G-GAATGGAGTTC **
28812533-A-C 26666386-A-C **
28812522-A-G 26666375-A-G **
28792977-GAAT-G 26646830-GAAT-G **
28740525-C-A 26594378-C-A **
28644981-G-T 26498834-G-T **
28517317-C-A 26371170-C-A **
22257963-T-G 20096077-T-G DYZ19 **
22056106-A-T 19894220-A-T **
16505012-C-A 14393132-C-A **
17130412-T-TC 15018532-T-TC **
17663118-CAAAA-C 15551238-CAAAA-C 26×A**
17605025-G-T 15493145-G-T **
17480031-TG-T 15368151-TG-T **
11003138-C-A **
17318255-C-A 15206375-C-A **
17279230-C-A 15167350-C-A **
17032630-C-G 14920750-C-G **
17916238-G-T 15804358-G-T **
16993306-G-T 14881426-G-T **
16931857-G-T 14819977-G-T **
16866102-A-C 14754222-A-C **
16729986-C-A 14618106-C-A **
16720439-T-C 14608559-T-C **
16623860-G-T 14511980-G-T **
16515925-T-A 14404045-T-A **
17794120-T-C 15682240-T-C **
18354214-G-T 16242334-G-T P6_Prx **
22011777-C-A 19849891-C-A **
21084508-G-T 18922622-G-T **
21974821-C-A 19812935-C-A **
21819510-G-C 19657624-G-C **
21813892-C-A 19652006-C-A **
21791754-C-T 19629868-C-T **
21635049-G-T 19473163-G-T **
21386302-C-G 19224416-C-G **
21381408-A-G 19219522-A-G **
20793456-AT-A 18631570-AT-A P4_Prx **
18427786-A-C 16315906-A-C P6_Dst **
19926949-A-T 17815069-A-T P5_Prx **
19817559-A-G 17705679-A-G P5_Prx **
19272183-G-T 17160303-G-T **
19252672-C-A 17140792-C-A **
19129615-T-A 17017735-T-A **
19044392-A-T 16932512-A-T **
18754952-G-A 16643072-G-A **
11003141-C-G **
11003177-A-T **
11003118-G-A **
6602695-G-T 6734654-G-T **
7670865-C-A 7802824-C-A **
7669244-G-T 7801203-G-T **
7304570-C-A 7436529-C-A **
7299148-C-A 7431107-C-A **
7074998-A-C 7206957-A-C **
6977109-C-A 7109068-C-A **
6697117-A-T 6829076-A-T **
6697106-C-A 6829065-C-A **
6475291-A-C 6607250-A-C **
8720162-C-A 8852121-C-A **
6457468-G-T 6589427-G-T **
6424266-C-A 6556225-C-A **
6042007-T-TAA 6173966-T-TAA 18×A**
5887224-C-A 6019183-C-A **
5871762-G-T 6003721-G-T **
5824255-C-A 5956214-C-A **
5803078-A-G 5935037-A-G **
5684508-G-T 5816467-G-T **
8658386-G-T 8790345-G-T **
8751258-C-A 8883217-C-A **
5523095-C-A 5655054-C-A **
11003107-C-A **
10752356-T-G **
10752339-AACTCC-A **
10745000-C-T **
10744487-TC-T **
10744470-A-ACCACAC **
10667927-T-A **
10667811-T-A **
10664444-C-A **
10661081-C-A **
9109446-G-T **
10656620-A-T **
10656284-C-A **
10655363-C-A **
10003403-G-C 10165794-G-C **
9942207-C-A 10104598-C-A **
9925274-A-G 10087665-A-G **
9773471-T-G 9935862-T-G **
9773469-A-C 9935860-A-C **
5570143-G-T 5702102-G-T **
5366985-C-A 5498944-C-A **
10752369-TG-T **
11004416-A-T **
2948754-C-A 3080713-C-A **
6694098-C-A 6826057-C-A **
14992494-C-A 12880579-C-A **
13267431-C-CAA 11111755-C-CAA 16×A**
10999976-A-C **
6916351-C-A 7048310-C-A **
28716369-C-A 26570222-C-A **
27810334-AAGGG-A 25664187-AAGGG-A P1_Y2 **
16438012-C-A 14326132-C-A **
3514522-C-CTTT 3646481-C-CTTT 16×T**
13987212-C-A 11866506-C-A **
19031354-C-A 16919474-C-A **
15776308-C-A 13664428-C-A **
13461074-T-G 11305398-T-G **
28802734-G-A 26656587-G-A **
28802733-G-C 26656586-G-C **
21905316-T-A 19743430-T-A **
14143442-C-A 12022736-C-A **
3252866-C-A 3384825-C-A **
3723958-G-C 3855917-G-C **
5303035-G-T 5434994-G-T **
4902082-T-C 5034041-T-C **
5294495-C-A 5426454-C-A **
5274302-C-A 5406261-C-A **
5242748-C-A 5374707-C-A **
5199663-C-A 5331622-C-A **
5171498-C-A 5303457-C-A **
5102257-A-T 5234216-A-T **
4999161-A-C 5131120-A-C **
4968259-C-A 5100218-C-A **
4694583-C-A 4826542-C-A **
3759245-C-A 3891204-C-A **
4567149-G-T 4699108-G-T **
4438449-A-G 4570408-A-G **
4438398-G-A 4570357-G-A **
4107847-C-A 4239806-C-A **
3848564-C-A 3980523-C-A **
3828973-C-A 3960932-C-A **
3787598-A-G 3919557-A-G **
3782528-G-T 3914487-G-T **
10752365-A-ACTCAAC **
10663352-C-A **
10752374-T-C **
10878643-C-A **
10940487-G-T **
10935677-A-G **
10927634-T-G **
10924369-C-A **
10920473-G-T **
10916596-AC-A **
10902020-A-T **
10887901-T-A **
10878591-T-G **
10942700-T-G **
10877785-C-A **
10877710-C-A **
10877703-C-A **
10877696-C-A **
10752385-A-T **
10877683-C-A **
10874765-C-A **
10869886-C-A **
10940781-C-A **
10946010-C-A **
10851035-C-A **
10993730-G-T **
11000024-C-A **
10999981-C-G **
10999980-A-T **
10993802-C-G **
10993783-T-C **
10993776-TATA-T **
10993767-T-A **
10993763-T-C **
10993724-G-A **
10951736-A-T **
10993720-C-G **
10993715-T-C **
10989834-G-A **
10989819-A-ACCAGT **
10979785-T-C **
10978718-C-A **
10973623-G-C **
10961603-A-G **
10958171-C-A **
10855734-T-G **
10877685-T-A **
56844669-T-C **
10842954-C-T **
10789830-C-T **
10789805-C-T **
10782516-C-A **
10768880-C-T **
10806867-A-G **
10768873-C-T **
10808957-C-T **
10768855-T-C **
10765279-C-A **
10820634-C-T **
10761894-C-A **
10822564-G-T **
10836506-T-A **
10836508-C-A **
10836503-C-G **
10752395-T-C **
10752394-C-T **
10842962-C-T **
10752390-A-G **
10842971-A-T **
10844727-C-A **
10845799-T-C **
10847413-C-A **
10756631-C-G **
10842959-C-G **
10848052-C-A **
10847547-C-G **
28549944-G-T 26403797-G-T ***
56833180-CCA-C ***
56830565-C-A,T ***
15864139-C-A 13752259-C-A ***
28798709-G-T 26652562-G-T ***
58977470-G-C 56831323-G-C ***
15430419-C-A 13318539-C-A ***
10654591-T-TACAAC ***
8479399-CTTTTT-C 8611358-CTTTTT-C 18×T***
14977296-CTTT-C,CTTTT 12865371-CTTT-C,CTTTT 15×T***
27863659-A-G 25717512-A-G P1_Y2 ***
21554952-C-A 19393066-C-A ***
14914672-CTTTT-C,CTTTTT 12802739-CTTTT-C,CTTTTT 17×T***
8159775-T-C 8291734-T-C ***
11656424-GA-G ***
21445303-C-A 19283417-C-A ***
5603547-T-C 5735506-T-C ***
21285150-C-A 19123264-C-A ***
5420758-C-A 5552717-C-A ***
21133579-AG-A 18971693-AG-A ***
13493909-C-A 11338233-C-A ***
13456342-C-A 11300666-C-A ***
14485115-C-G 12364384-C-G ***
23387661-C-A 21225775-C-A 8×A***
16768501-C-CAA 14656621-C-CAA 14×A***
3831204-TA-T 3963163-TA-T ***
11031316-C-G ***
18607365-C-CAT,CATAT 16495485-C-CAT,CATAT 10×AT***
13922394-C-A 11801688-C-A ***
10801705-T-A ***
24455146-T-C 22308999-T-C ***
10801661-C-A ***
14694440-C-A 12582506-C-A ***
10801660-T-G ***
7897456-G-T 8029415-G-T ***
8792809-C-A 8924768-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N89514957347678293647734029
Used in age calculations957347678293647734029
Counts of SNPs2020
Variant counts last updated 2018-06-18 20:54:37.



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