Tree Position

R-U106/S21 > Z2265 > Z381/S263 > S264/Z156 > Z305 > Z307 > S265/Z304 > BY12480 > DF96 > FGC13326

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
237406
19756170-G-A 17644290-G-A P5_Prx A*
19866788-C-T 17754908-C-T P5_Prx A*
20711795-C-T 18549909-C-T P4_Prx A*
20644071-C-T 18482185-C-T P4_Prx A*
20734402-G-A 18572516-G-A P4_Prx A*
22231443-T-G 20069557-T-G DYZ19 A*
26229901-G-C 24083754-G-C P1_Y1 A*
14460683-G-A 12339956-G-A BY95882 YY+
14127832-A-C 12007126-A-C BY93221 YY+
15929591-A-AT 13817711-A-AT +
18904210-C-G 16792330-C-G BY124678 YY+
18973162-G-A 16861282-G-A BY125179 YY+
18985656-A-C 16873776-A-C BY125278 YY+
22005905-T-A 19844019-T-A BY137020 YY+
22088347-G-GT 19926461-G-GT +
21520358-T-C 19358472-T-C BY133574 YY+
14628873-C-A 12516941-C-A BY96858 YY+
17445117-G-T 15333237-G-T BY114863 YY+
22459905-A-C 20298019-A-C BY220429 DYZ19 +
21169274-T-C 19007388-T-C BY130845 YY+
15613781-G-A 13501901-G-A BY102897 YY+
15194942-C-G 13083028-C-G BY100111 YY+
15266052-A-G 13154141-A-G BY100552 YY+
6593789-G-A 6725748-G-A BY60343 +
22459490-G-A 20297604-G-A FGC18129 DYZ19 +
22294370-C-T 20132484-C-T BY216523 DYZ19 +
7740752-G-C 7872711-G-C BY67264 YY+
2650369-T-G 2782328-T-G BY55641 Y+
14360296-G-A 12239591-G-A 9645031-T-CBY21187 FGC68777 YY+
17706961-C-A 15595081-C-A BY116815 YY+
17889118-C-T 15777238-C-T BY118139 YY+
9406211-C-G 9568602-C-G BY79265 YY+
16250931-T-A 14139051-T-A BY106354 YY+
7827996-C-G 7959955-C-G BY68005 YY+
8801457-A-G 8933416-A-G BY76002 YY+
6634402-C-T 6766361-C-T BY60433 YY+
23842056-A-T 21680170-A-T FGC21729 Y+
23275301-G-A 21113415-G-A BY144288 YY+
18820540-T-G 16708660-T-G BY124084 YY+
8545288-G-A 8677247-G-A BY73880 YY+
8438428-C-G 8570387-C-G BY72756 YY+
22233974-T-A 20072088-T-A DYZ19 *
22253929-G-C 20092043-G-C DYZ19 *
16828822-C-A 14716942-C-A **
17426863-C-G 15314983-C-G **
16045261-T-G 13933381-T-G **
17338587-A-C 15226707-A-C **
16841898-C-A 14730018-C-A **
15491925-GT-G 13380045-GT-G **
15566840-G-A 13454960-G-A **
15619228-C-A 13507348-C-A **
16705568-C-A 14593688-C-A **
16678664-T-A 14566784-T-A **
16057079-C-T 13945199-C-T **
15635926-C-A 13524046-C-A **
16312857-C-A 14200977-C-A **
15658065-TATAC-T 13546185-TATAC-T **
15791345-G-A 13679465-G-A **
15860157-C-A 13748277-C-A **
15918578-C-G 13806698-C-G **
15742014-G-T 13630134-G-T **
14788060-G-T 12676131-G-T **
15430553-C-A 13318673-C-A **
11673379-A-T **
11674673-G-T **
11673401-G-A **
11673400-T-C **
11673399-A-T **
11673387-A-T **
11673386-G-C **
11673372-T-G **
13952741-A-C 11832035-A-C **
11673358-T-A **
11673356-G-T **
11673341-T-G **
5426407-TGA-T 5558366-TGA-T **
11673335-C-T **
11673330-A-T **
11674742-T-C **
13958729-C-A 11838023-C-A **
15394832-A-C 13282952-A-C **
14610686-C-T 12498888-C-T **
15184309-T-C 13072395-T-C **
15041027-A-C 12929117-A-C **
14992485-C-A 12880570-C-A **
14766703-C-A 12654772-C-A **
14667784-C-A 12555849-C-A **
14627091-C-A 12515159-C-A **
14408994-T-A 12288292-T-A **
13973042-GATTTTAAC-G 11852336-GATTTTAAC-G **
14377127-T-A 12256423-T-A **
14296923-C-A 12176217-C-A **
14253232-G-A 12132526-G-A **
14245041-A-C 12124335-A-C Y90793 **
14245037-A-C 12124331-A-C **
14232945-C-A 12112239-C-A **
14011206-G-A 11890500-G-A **
17433174-G-A 15321294-G-A **
18737490-T-G 16625610-T-G **
17504139-G-T 15392259-G-T **
23126590-G-C 20964704-G-C **
21708273-A-C 19546387-A-C **
21885954-A-G 19724068-A-G **
21910170-G-T 19748284-G-T **
22008403-C-A 19846517-C-A **
22048593-C-A 19886707-C-A **
22076946-C-A 19915060-C-A **
22122996-A-T 19961110-A-T **
22175893-C-A 20014007-C-A **
22328544-C-A 20166658-C-A DYZ19 **
22600208-C-T 20438322-C-T **
22658264-C-A 20496378-C-A **
22774591-T-G 20612705-T-G **
23013723-G-C 20851837-G-C **
23193155-G-T 21031269-G-T **
21559023-C-T 19397137-C-T **
23896963-G-T 21735077-G-T **
24283328-AG-A 22137181-AG-A P3_t1 **
24302840-A-C 22156693-A-C P3_t1 **
24381214-C-T 22235067-C-T **
24406254-C-T 22260107-C-T **
24960908-T-A 22814761-T-A g1 **
24960919-T-A 22814772-T-A g1 **
27894044-C-A 25747897-C-A P1_Y2 **
28585601-C-A 26439454-C-A **
28607576-G-A 26461429-G-A **
28747795-C-A 26601648-C-A **
28796146-T-C 26649999-T-C **
56698576-T-C **
21665649-C-A 19503763-C-A **
21513993-T-C 19352107-T-C **
17524181-A-G 15412301-A-G **
19379436-A-T 17267556-A-T **
17885141-A-T 15773261-A-T **
17885149-A-T 15773269-A-T **
18094323-T-G 15982443-T-G **
18222390-G-T 16110510-G-T **
18398193-AT-A 16286313-AT-A P6_Gap **
18567832-T-A 16455952-T-A **
18661626-G-C 16549746-G-C **
18687647-C-A 16575767-C-A **
11673317-G-A **
18895745-C-A 16783865-C-A **
18990630-C-A 16878750-C-A **
19259076-C-A 17147196-C-A **
19271495-C-A 17159615-C-A **
19427665-G-C 17315785-G-C **
21468215-C-A 19306329-C-A **
19459234-C-A 17347354-C-A **
19576268-C-A 17464388-C-A P5_Prx **
19762444-T-C 17650564-T-C P5_Prx **
19839643-G-AT 17727763-G-AT P5_Prx **
19949230-C-A 17837350-C-A P5_Prx **
20420774-A-T 18258888-A-T P5_Dst **
20587808-A-AAC 18425922-A-AAC P5_Dst 10×AT**
20746336-G-T 18584450-G-T P4_Prx **
20746372-G-T 18584486-G-T P4_Prx **
20746377-G-T 18584491-G-T P4_Prx **
20746392-C-A 18584506-C-A P4_Prx **
21243925-C-A 19082039-C-A **
21371219-C-A 19209333-C-A **
21381990-C-A 19220104-C-A **
11673329-C-T **
11673336-A-G **
11673310-T-A **
7610384-C-A 7742343-C-A **
6828772-C-A 6960731-C-A **
6903756-A-C 7035715-A-C **
6923047-A-G 7055006-A-G **
7083893-C-A 7215852-C-A **
7093681-C-A 7225640-C-A **
2671002-G-T 2802961-G-T **
7142669-C-T 7274628-C-T **
7154569-G-T 7286528-G-T **
7237064-C-A 7369023-C-A **
7311924-T-A 7443883-T-A **
7363168-A-AAAT 7495127-A-AAAT **
7363183-G-C 7495142-G-C **
7428160-A-C 7560119-A-C **
7610383-G-A 7742342-G-A **
7641019-C-A 7772978-C-A **
6770885-C-A 6902844-C-A **
9040275-G-A 9202666-G-A **
9437376-C-A 9599767-C-A **
9422943-C-A 9585334-C-A **
19531534-C-A 17419654-C-A **
9382544-C-T 9544935-C-T **
7076612-CAAA-C 7208571-CAAA-C 29×A**
9077815-C-A 9240206-C-A **
8987980-G-T 9150371-G-T **
7917134-C-A 8049093-C-A **
2960267-C-A 3092226-C-A **
15739789-A-T 13627909-A-T **
4093463-C-A 4225422-C-A **
8690498-C-A 8822457-C-A **
11658789-C-A **
8001969-A-T 8133928-A-T **
6787038-G-T 6918997-G-T **
6630643-G-T 6762602-G-T **
9928466-G-T 10090857-G-T **
4101020-A-T 4232979-A-T **
4576030-G-A 4707989-G-A **
4550481-G-T 4682440-G-T **
4527130-A-T 4659089-A-T **
4513325-G-T 4645284-G-T **
4426113-C-A 4558072-C-A **
4174896-T-C 4306855-T-C **
2842991-C-A 2974950-C-A **
5070949-G-T 5202908-G-T **
2853433-G-A 2985392-G-A **
3759930-C-A 3891889-C-A **
3452152-G-T 3584111-G-T **
3440215-C-A 3572174-C-A **
3109107-G-T 3241066-G-T **
2854816-A-G 2986775-A-G **
4772577-G-A 4904536-G-A **
5170349-G-A 5302308-G-A **
6516666-C-A 6648625-C-A **
5635207-A-C 5767166-A-C **
6328725-C-A 6460684-C-A IR3_Dst **
6310215-A-G 6442174-A-G IR3_Dst **
6102398-C-A 6234357-C-A **
5964215-T-A 6096174-T-A **
5922113-C-A 6054072-C-A **
5871861-C-A 6003820-C-A **
5605638-C-A 5737597-C-A **
5249690-C-T 5381649-C-T **
2671053-G-T 2803012-G-T **
5577295-A-G 5709254-A-G **
5569926-C-A 5701885-C-A **
5550486-G-T 5682445-G-T **
5524651-T-G 5656610-T-G **
5426406-T-G 5558365-T-G **
2927438-C-A 3059397-C-A **
4470065-C-A 4602024-C-A **
10028483-C-A 10190874-C-A **
13309717-C-G 11154041-C-G **
10652165-T-A **
10952732-C-A **
10964652-C-T **
10986093-C-A **
10988566-A-G **
10988569-C-G **
11006434-C-A **
11010508-C-A **
11013106-C-A **
11018931-C-A **
11020214-G-T **
11029318-C-A **
13235574-C-A 11079898-C-A **
3334384-G-T 3466343-G-T **
27829317-C-A 25683170-C-A P1_Y2 **
10929597-CT-C **
11650471-G-C **
11656362-A-T **
11656359-C-G **
11654319-G-T **
11650500-C-T **
11650495-A-T **
11650476-A-G **
13698666-T-G 11542990-T-G **
26400765-A-AT 24254618-A-AT P1_Y1 11×T**
13613612-T-A 11457936-T-A **
13550843-T-C 11395167-T-C **
13476876-A-G 11321200-A-G **
13458075-GCATTCCATTCCATTCCATTCCATTCCATTC-G 11302399-GCATTCCATTCCATTCCATTCCATTCCATTC-G 9×CATTC**
13456363-C-A 11300687-C-A **
13453715-C-A 11298039-C-A **
10929627-C-A **
10948000-C-A **
10914254-G-T **
10763146-C-A **
10821851-C-A **
10821317-C-A **
10811697-G-T **
10809019-ATTGCATTCCG-A **
7019174-A-C 7151133-A-C **
10776511-C-T **
10755532-C-A **
10827682-C-A **
10751610-G-T **
10744257-CAT-C **
10744256-C-CT **
7093223-C-A 7225182-C-A **
10658430-C-T **
10652167-T-C **
10900603-T-C **
10823660-T-A **
10836496-C-T **
15174674-C-A 13062760-C-A 9×A**
10900599-T-A **
10900569-C-T **
10889771-A-T **
10870772-C-A **
10869863-A-C **
10869818-G-T **
10855670-T-G **
10842321-C-G **
10838561-T-G **
10840792-C-A **
10836519-C-A **
10836511-C-CCCCTT **
3092718-C-A 3224677-C-A **
56832487-C-A ***
28776909-C-A 26630762-C-A ***
24070736-C-A 21924589-C-A P3_b1 ***
2706841-GAAAA-G 2838800-GAAAA-G 16×A***
23293667-C-A 21131781-C-A ***
6144737-G-GA,GAA 6276696-G-GA,GAA IR3_Dst 12×A***
23522449-C-A 21360563-C-A ***
18737402-C-A 16625522-C-A ***
22902108-C-CAA 20740222-C-CAA 17×A***
9414915-G-GT,GTT 9577306-G-GT,GTT 12×T***
13507154-A-G 11351478-A-G ***
13838796-GA-G 11718090-GA-G ***
13848303-CA-C 11727597-CA-C ***
13257554-C-A 11101878-C-A ***
13257546-C-G 11101870-C-G ***
14472015-C-A 12351284-C-A ***
10848382-C-A ***
16278910-C-A 14167030-C-A ***
10669558-C-A ***
17865956-C-A 15754076-C-A ***
18162897-C-CT,CTT 16051017-C-CT,CTT 13×T***
22601756-C-T 20439870-C-T ***
18634709-C-A 16522829-C-A ***
18635286-CAT-C 16523406-CAT-C ***
8967097-TATA-T 9129488-TATA-T ***
19129053-CTTTTTT-C 17017173-CTTTTTT-C 16×T***
19469877-ACCC-A,ACC 17357997-ACCC-A,ACC 12×C***
5586971-G-T 5718930-G-T ***
5021965-C-A 5153924-C-A ***
22056105-C-A 19894219-C-A ***
22067499-C-A 19905613-C-A ***
3804678-T-C 3936637-T-C ***
22319059-A-G 20157173-A-G DYZ19 ***
29610-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 237406943213877527517674521
Used in age calculations943213877527517674521
Counts of SNPs2727
Variant counts last updated 2019-09-27 03:21:19.



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