Cristiani

BigY2: 720116
MDKA Birth: Italy > Lombardia

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Z56 > BY3548 > Z43/S366 > Z48/S484 > BY3952 > FGC11881 > ~6254510-C-A > FGC62160 > FGC62167 > FGC62163

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
720116
22252837-G-T 20090951-G-T DYZ19 A*
19586462-C-T 17474582-C-T P5_Prx YA*
25512983-G-A 23366836-G-A P1_gr1 A*
25890442-T-C 23744295-T-C P1_Y1 A*
26015884-C-G 23869737-C-G P1_Y1 A*
8465669-C-T 8597628-C-T F3867 YY+
14588247-TTCTC-T 12476447-TTCTC-T +
2727585-C-G 2859544-C-G BY56055 YY+
8260889-G-A 8392848-G-A S11223 YY+
8778865-A-C 8910824-A-C BY75830 YY+
9796099-G-A 9958490-G-A BY81063 Y+
14275292-C-T 12154586-C-T BY94478 YY+
14803855-G-C 12691926-G-C BY97664 YY+
15730134-G-A 13618254-G-A BY103679 YY+
16268331-A-T 14156451-A-T BY106539 YY+
17039713-A-G 14927833-A-G BY111923 YY+
17472665-T-C 15360785-T-C BY115049 YY+
19484098-T-A 17372218-T-A BY129476 Y+
21218805-G-A 19056919-G-A BY131196 YY+
21635554-G-T 19473668-G-T BY134327 YY+
21859886-A-C 19698000-A-C BY135969 YY+
22436658-A-G 20274772-A-G BY218191 DYZ19 +
22477718-C-T 20315832-C-T BY223871 DYZ19 +
18255-A-G +
22254469-G-T 20092583-G-T DYZ19 *
22257862-C-T 20095976-C-T DYZ19 *
22302880-G-C 20140994-G-C DYZ19 *
13476341-T-C 11320665-T-C **
13941692-GA-G 11820986-GA-G **
13253383-A-T 11097707-A-T **
13200288-C-T 11044612-C-T S13646 **
22258140-C-G 20096254-C-G FT453912 DYZ19 **
10677870-A-T **
11643349-C-A BY89849 DYZ17 **
56832768-C-CCACTA **
56846372-G-T **
4804632-C-A 4936591-C-A **
14517777-C-A 12405978-C-A **
6490778-C-A 6622737-C-A **
21166788-C-A 19004902-C-A **
8983367-G-T 9145758-G-T **
18855432-C-T 16743552-C-T **
18687719-C-CA 16575839-C-CA **
17030606-A-T 14918726-A-T **
16044310-C-A 13932430-C-A **
26153993-G-T 24007846-G-T P1_Y1 **
13941194-C-A 11820488-C-A **
5755181-C-A 5887140-C-A **
26415665-C-A 24269518-C-A P1_Y1 **
13811140-A-G 11690434-A-G DYZ17 **
2686435-C-CAA 2818394-C-CAA 13×A**
2752442-T-G 2884401-T-G **
2843890-G-T 2975849-G-T **
2845916-A-G 2977875-A-G **
3165030-C-T 3296989-C-T **
3284165-C-A 3416124-C-A **
3622202-C-A 3754161-C-A **
3626344-A-T 3758303-A-T **
3640627-C-T 3772586-C-T **
3648378-C-G 3780337-C-G **
3649054-A-C 3781013-A-C **
3759185-C-A 3891144-C-A **
3853842-A-T 3985801-A-T **
3876924-C-G 4008883-C-G **
3876925-C-G 4008884-C-G **
3876956-T-G 4008915-T-G **
4136550-A-T 4268509-A-T **
4178897-C-A 4310856-C-A **
4805071-C-A 4937030-C-A **
4902217-A-G 5034176-A-G **
4920457-G-T 5052416-G-T **
4936957-C-A 5068916-C-A **
4961463-T-A 5093422-T-A **
5022027-G-A 5153986-G-A **
5022032-C-A 5153991-C-A **
5127658-G-A 5259617-G-A **
5127745-T-C 5259704-T-C **
5216451-C-T 5348410-C-T FT123507 **
5220484-A-G 5352443-A-G **
5310393-A-T 5442352-A-T **
5587031-C-T 5718990-C-T **
5587079-G-T 5719038-G-T **
5755373-C-G 5887332-C-G **
5775069-C-A 5907028-C-A **
5865383-A-C 5997342-A-C **
5882608-T-C 6014567-T-C **
5935376-C-T 6067335-C-T **
6037640-T-C 6169599-T-C **
6037791-T-C 6169750-T-C **
6039814-C-A 6171773-C-A **
6251988-T-A 6383947-T-A IR3_Dst **
6293335-G-GTTT 6425294-G-GTTT IR3_Dst 11×T**
6514388-C-A 6646347-C-A **
6647963-C-A 6779922-C-A **
6847949-C-A 6979908-C-A **
6862198-T-A 6994157-T-A **
6873274-C-A 7005233-C-A **
6996881-T-G 7128840-T-G **
6996917-T-C 7128876-T-C **
7030439-C-A 7162398-C-A **
7030475-C-A 7162434-C-A **
7099296-T-G 7231255-T-G **
7154576-A-G 7286535-A-G **
7158250-A-T 7290209-A-T **
7256149-G-A 7388108-G-A **
7269681-G-T 7401640-G-T **
7316506-G-T 7448465-G-T **
7334126-T-A 7466085-T-A **
7353581-A-C 7485540-A-C **
7358250-C-A 7490209-C-A **
7362572-C-A 7494531-C-A **
7409760-TGTG-T 7541719-TGTG-T **
7413475-A-C 7545434-A-C **
7413478-G-C 7545437-G-C **
7613855-A-C 7745814-A-C **
7629769-A-T 7761728-A-T **
7633200-A-C 7765159-A-C **
7633261-A-C 7765220-A-C **
7633303-C-A 7765262-C-A **
7635958-A-T 7767917-A-T **
7636451-A-T 7768410-A-T **
7649284-C-A 7781243-C-A **
7758139-C-A 7890098-C-A **
7784577-C-A 7916536-C-A **
7874812-C-A 8006771-C-A **
7935723-C-G 8067682-C-G **
8119050-C-A 8251009-C-A **
8230381-T-A 8362340-T-A **
8255801-C-T 8387760-C-T **
8342858-A-C 8474817-A-C **
8350544-C-A 8482503-C-A **
8437581-T-C 8569540-T-C **
8738874-C-A 8870833-C-A **
8748480-C-A 8880439-C-A **
8749041-C-A 8881000-C-A **
9136811-C-A 9299202-C-A **
9166885-G-T 9329276-G-T **
9403520-AG-A 9565911-AG-A **
9424394-C-A 9586785-C-A **
9424545-C-A 9586936-C-A **
9461988-C-A 9624379-C-A **
9727164-A-G 9889555-A-G IR3_Prx **
9734955-G-T 9897346-G-T IR3_Prx **
9805358-C-A 9967749-C-A **
9820472-C-A 9982863-C-A **
9822742-T-A 9985133-T-A **
9865293-T-C 10027684-T-C **
9874302-C-A 10036693-C-A **
9892715-C-A 10055106-C-A **
9945700-C-A 10108091-C-A **
9966179-T-A 10128570-T-A **
9987730-G-T 10150121-G-T **
10004723-A-C 10167114-A-C **
10080313-T-C 10242704-T-C **
10653006-A-G **
10653078-C-A **
10653346-C-T **
10657484-T-C **
10669460-A-ACTACAGTCAATTCTGTTCTT **
10677983-C-A **
10693888-C-A **
10744348-T-TAAC **
10744350-ATGC-A **
10747003-C-T **
10749107-C-A **
10757330-C-A **
10757347-C-CACTCGAA **
10760356-A-T **
10760390-C-A **
10779406-T-C FT430851 **
10796152-C-G **
10873147-C-T **
10873170-T-C **
10873172-G-GAATTC **
10873186-T-TCCACA **
10873197-C-T **
10873210-T-C **
10900172-C-A **
10942551-C-A **
10958402-T-C **
10964778-A-ACCCCT **
10988123-C-A **
10996483-T-C **
10997871-A-T **
11004451-A-G **
11004464-C-A **
11005016-C-G **
11009350-C-A **
11012264-T-G **
11014333-A-T **
11017647-T-A **
11022269-T-C **
13194251-A-G 11038575-A-G **
13202581-A-C 11046905-A-C **
13209276-T-C 11053600-T-C **
13218814-G-A 11063138-G-A **
13220021-C-A 11064345-C-A **
13222022-G-T 11066346-G-T **
13224577-T-C 11068901-T-C **
13253389-T-G 11097713-T-G **
13309717-C-T 11154041-C-T **
13445360-GACA-G 11289684-GACA-G **
13454462-C-A 11298786-C-A **
13491125-C-A 11335449-C-A **
13505089-C-A 11349413-C-A **
13605683-T-A 11450007-T-A **
13628916-C-T 11473240-C-T **
13643480-C-A 11487804-C-A **
11651773-A-T DYZ17 **
11655424-A-C DYZ17 **
11658243-G-T DYZ17 **
13881190-A-G 11760484-A-G **
13929813-T-C 11809107-T-C **
13941686-A-T 11820980-A-T **
13942575-C-A 11821869-C-A **
13947048-G-C 11826342-G-C **
13974014-C-A 11853308-C-A **
13996070-C-A 11875364-C-A **
14006650-C-A 11885944-C-A **
14054933-C-A 11934227-C-A **
14091471-A-G 11970765-A-G **
14142818-T-A 12022112-T-A **
14151470-C-A 12030764-C-A **
14155249-T-C 12034543-T-C **
14187970-A-T 12067264-A-T **
14187993-A-G 12067287-A-G **
14198342-C-A 12077636-C-A **
14228704-G-A 12107998-G-A **
14278345-C-A 12157639-C-A **
14284959-C-A 12164253-C-A **
14286114-G-A 12165408-G-A **
14294325-C-A 12173619-C-A **
14294329-T-A 12173623-T-A **
14294337-T-A 12173631-T-A **
14328037-A-G 12207331-A-G **
14354567-A-G 12233862-A-G **
14370791-C-T 12250087-C-T **
14377127-T-C 12256423-T-C **
14440626-C-A 12319899-C-A **
14461349-C-CT 12340622-C-CT 8×T**
14508794-G-A 12396999-G-A **
14531463-C-A 12419664-C-A **
14531960-C-A 12420161-C-A **
14532153-C-T 12420354-C-T **
14533521-G-A 12421722-G-A **
14539179-C-A 12427380-C-A **
14552460-T-C 12440661-T-C **
14584607-A-G 12472807-A-G **
14604629-A-T 12492831-A-T **
14614638-T-A 12502836-T-A **
14685896-G-C 12573962-G-C **
14685912-G-T 12573978-G-T **
14884688-G-A 12772754-G-A **
14970373-C-A 12858448-C-A **
14992809-C-T 12880894-C-T **
15084667-T-C 12972757-T-C **
15126762-T-C 13014849-T-C **
15127812-A-G 13015899-A-G **
15138229-C-G 13026316-C-G **
15140850-T-G 13028937-T-G **
15146432-A-G 13034519-A-G **
15171253-A-G 13059339-A-G **
15172675-T-C 13060761-T-C **
15177400-G-GA 13065486-G-GA **
15191273-C-G 13079359-C-G **
15235466-A-T 13123552-A-T **
15305698-T-A 13193797-T-A **
15380257-G-A 13268377-G-A **
15446083-C-A 13334203-C-A **
15468439-G-A 13356559-G-A **
15495439-C-A 13383559-C-A **
15513676-A-G 13401796-A-G **
15593087-C-A 13481207-C-A **
15605486-C-A 13493606-C-A **
15605717-G-A 13493837-G-A **
15683690-T-G 13571810-T-G **
15740471-G-A 13628591-G-A **
15786475-G-C 13674595-G-C **
15871598-C-G 13759718-C-G **
15917545-T-C 13805665-T-C **
15946840-A-G 13834960-A-G **
15946849-A-G 13834969-A-G **
15987316-C-A 13875436-C-A **
16052779-G-A 13940899-G-A **
16060061-T-C 13948181-T-C **
16146487-G-GAAAA 14034607-G-GAAAA P8_Dst **
16175244-C-A 14063364-C-A **
16246169-T-C 14134289-T-C FT243113 **
16261580-C-A 14149700-C-A **
16275538-A-T 14163658-A-T **
16276089-A-C 14164209-A-C **
16284087-C-T 14172207-C-T **
16290886-T-C 14179006-T-C **
16295762-A-C 14183882-A-C **
16295798-A-T 14183918-A-T **
16333620-A-T 14221740-A-T **
16342195-C-A 14230315-C-A **
16342694-C-A 14230814-C-A **
16428277-A-C 14316397-A-C **
16430122-T-A 14318242-T-A **
16437560-A-G 14325680-A-G **
16445586-G-C 14333706-G-C **
16463387-T-A 14351507-T-A **
16589255-C-A 14477375-C-A **
16607951-C-A 14496071-C-A **
16612638-T-TTA 14500758-T-TTA **
16625854-G-A 14513974-G-A **
16702325-C-A 14590445-C-A **
16764981-C-A 14653101-C-A **
16836679-C-A 14724799-C-A **
16897640-TC-T 14785760-TC-T **
16929659-T-G 14817779-T-G **
17032537-A-T 14920657-A-T **
17246829-C-A 15134949-C-A **
17250857-T-A 15138977-T-A **
17250893-G-A 15139013-G-A **
17333944-G-C 15222064-G-C **
17347562-C-A 15235682-C-A **
17367825-C-A 15255945-C-A **
17371155-G-A 15259275-G-A **
17374715-A-C 15262835-A-C **
17382468-C-A 15270588-C-A FT42631 **
17492338-A-G 15380458-A-G **
17497069-C-A 15385189-C-A FT309446 **
17513294-C-A 15401414-C-A **
17547706-T-C 15435826-T-C **
17552131-C-A 15440251-C-A **
17575131-T-A 15463251-T-A **
17576210-C-A 15464330-C-A **
17581759-C-A 15469879-C-A **
17591446-C-A 15479566-C-A **
17668347-C-A 15556467-C-A **
17722417-A-G 15610537-A-G **
17760404-C-A 15648524-C-A **
18007490-C-A 15895610-C-A P7_Gap **
18094331-C-A 15982451-C-A **
18146384-C-A 16034504-C-A **
18183092-C-A 16071212-C-A **
18200997-C-A 16089117-C-A **
18206532-T-G 16094652-T-G **
18243911-A-G 16132031-A-G **
18337318-T-G 16225438-T-G P6_Prx **
18381986-C-A 16270106-C-A P6_Gap **
18511587-T-A 16399707-T-A P6_Dst **
18566149-A-G 16454269-A-G **
18583986-C-T 16472106-C-T **
18586779-T-C 16474899-T-C **
18596395-T-C 16484515-T-C **
18687890-G-A 16576010-G-A **
18738149-C-T 16626269-C-T **
18744185-A-T 16632305-A-T **
18901303-T-G 16789423-T-G **
18901934-C-A 16790054-C-A FT343845 **
18946955-C-A 16835075-C-A **
18989798-C-T 16877918-C-T **
18989821-T-C 16877941-T-C **
19022385-G-T 16910505-G-T **
19103009-T-C 16991129-T-C **
19111373-C-A 16999493-C-A **
19138845-C-A 17026965-C-A **
19216214-G-T 17104334-G-T **
19262776-G-C 17150896-G-C **
19280831-C-A 17168951-C-A **
19398119-T-G 17286239-T-G **
19407608-T-C 17295728-T-C **
19416443-A-T 17304563-A-T **
19418524-T-A 17306644-T-A 12×A**
19433305-C-T 17321425-C-T **
19465018-A-T 17353138-A-T **
19482327-T-A 17370447-T-A **
20647515-T-C 18485629-T-C P4_Prx **
20690179-T-TC 18528293-T-TC P4_Prx **
20802712-T-C 18640826-T-C P4_Gap **
20865473-G-T 18703587-G-T P4_Dst **
21057007-T-C 18895121-T-C **
21091024-C-A 18929138-C-A **
21136834-T-C 18974948-T-C **
21152902-A-G 18991016-A-G **
21262745-T-C 19100859-T-C **
21297450-G-T 19135564-G-T **
21360317-T-G 19198431-T-G **
21384870-A-G 19222984-A-G **
21388667-CTTTT-C 19226781-CTTTT-C 14×T**
21500233-T-C 19338347-T-C **
21560539-C-A 19398653-C-A **
21722260-G-T 19560374-G-T **
21785972-T-C 19624086-T-C **
21875880-T-G 19713994-T-G **
21875991-C-A 19714105-C-A **
21921866-A-G 19759980-A-G **
21946888-G-A 19785002-G-A **
21979929-G-A 19818043-G-A **
22022850-C-A 19860964-C-A Y108164 **
22028321-G-A 19866435-G-A **
22068712-C-A 19906826-C-A **
22077372-T-A 19915486-T-A **
22077375-C-CA 19915489-C-CA **
22102569-T-A 19940683-T-A **
22128009-G-T 19966123-G-T **
22161618-T-C 19999732-T-C **
22198955-TA-T 20037069-TA-T 8×A**
22209040-A-T 20047154-A-T **
22319067-T-G 20157181-T-G DYZ19 **
22485786-A-C 20323900-A-C DYZ19 **
22526233-A-C 20364347-A-C **
22562845-C-A 20400959-C-A **
22619273-C-A 20457387-C-A **
22625034-A-G 20463148-A-G **
22649401-C-A 20487515-C-A **
22653310-C-A 20491424-C-A **
22723313-A-T 20561427-A-T **
22797776-C-T 20635890-C-T **
22808801-C-T 20646915-C-T **
22885077-A-G 20723191-A-G **
22914561-C-A 20752675-C-A **
23126673-C-G 20964787-C-G **
23126690-A-G 20964804-A-G **
23126748-G-A 20964862-G-A **
23126760-C-G 20964874-C-G **
23193291-A-T 21031405-A-T **
23205080-C-A 21043194-C-A **
23277307-C-A 21115421-C-A **
23350592-C-A 21188706-C-A **
23374461-A-T 21212575-A-T **
23387554-T-G 21225668-T-G **
23391562-G-T 21229676-G-T **
23425143-C-A 21263257-C-A **
23440250-C-A 21278364-C-A **
23505030-A-G 21343144-A-G **
23578781-C-A 21416895-C-A **
23789349-C-A 21627463-C-A **
23848425-G-A 21686539-G-A **
23983323-A-T 21837176-A-T **
24872827-A-T 22726680-A-T IR1_R **
24931842-C-A 22785695-C-A g1 **
25524733-T-C 23378586-T-C P1_gr1 **
25997415-A-T 23851268-A-T P1_Y1 **
26047332-C-T 23901185-C-T P1_Y1 **
26098018-A-AAAAG 23951871-A-AAAAG P1_Y1 **
26133352-G-A 23987205-G-A P1_Y1 **
26170539-A-G 24024392-A-G BY30322 P1_Y1 **
26170552-G-GAAC 24024405-G-GAAC P1_Y1 **
26325112-C-G 24178965-C-G P1_Y1 **
26379150-C-A 24233003-C-A P1_Y1 **
26421471-TG-T 24275324-TG-T P1_Y1 **
26421474-C-CTTT 24275327-C-CTTT P1_Y1 24×TG**
28006837-A-C 25860690-A-C P1_Y2 **
28008171-T-C 25862024-T-C P1_Y2 **
28101535-TTTTTGTT-CCCCCCCC 25955388-TTTTTGTT-CCCCCCCC P1_Y2 **
28229262-C-A 26083115-C-A P1_b4 **
28234432-A-C 26088285-A-C P1_b4 **
28465749-C-A 26319602-C-A **
28479203-C-T 26333056-C-T **
28521206-C-A 26375059-C-A **
28532142-T-C 26385995-T-C **
28607941-A-G 26461794-A-G FTA20993 **
28645808-A-G 26499661-A-G **
28657339-C-T 26511192-C-T **
28764892-G-T 26618745-G-T **
28793782-T-C 26647635-T-C **
56707163-C-A **
56829878-C-T **
56839621-G-T **
56842889-G-T **
20685195-G-A 18523309-G-A P4_Prx ***
8321435-C-T 8453394-C-T 15×T***
8705690-G-T 8837649-G-T ***
9361297-C-A 9523688-C-A ***
2708000-G-T 2839959-G-T ***
9859192-CAAA-C,CA 10021583-CAAA-C,CA 17×A***
2761924-A-G 2893883-A-G ***
3334500-G-C 3466459-G-C ***
5957043-C-T 6089002-C-T ***
6889163-C-A 7021122-C-A ***
7028517-T-C 7160476-T-C ***
8025155-CAA-C,CAAA 8157114-CAA-C,CAAA 14×A***
8035928-G-A 8167887-G-A FGC19120 ***
8069064-C-A 8201023-C-A ***
8562865-CAAA-C,CAA 8694824-CAAA-C,CAA 17×A***
9525011-T-C 9687402-T-C ***
10694011-C-A ***
10816472-C-A ***
10816514-T-C ***
13402526-C-A 11246850-C-A ***
13462971-C-G 11307295-C-G ***
13462975-C-A 11307299-C-A ***
13470997-C-A 11315321-C-A ***
13542868-T-C 11387192-T-C ***
11643719-GAATTGAT-G DYZ17 ***
11643779-G-C DYZ17 ***
14079462-G-A 11958756-G-A ***
14147768-C-T 12027062-C-T ***
14263200-T-A 12142494-T-A ***
14408744-C-A 12288042-C-A ***
14593447-CTTTT-C 12481647-CTTTT-C 15×T***
14848819-C-A 12736885-C-A ***
15182919-A-T 13071005-A-T ***
15512642-TAA-T,TAAA 13400762-TAA-T,TAAA 13×A***
15689215-C-A 13577335-C-A ***
15745103-C-A 13633223-C-A ***
15842581-C-T 13730701-C-T ***
15864223-C-A 13752343-C-A ***
15909787-A-ATT 13797907-A-ATT ***
16345116-A-T 14233236-A-T ***
16467537-C-A 14355657-C-A ***
16681783-C-A 14569903-C-A ***
17598118-T-C 15486238-T-C ***
17942151-C-A 15830271-C-A ***
18929061-C-A 16817181-C-A ***
19053077-C-A 16941197-C-A ***
21095173-T-C 18933287-T-C ***
21105359-CTATT-C 18943473-CTATT-C 4×TATT***
21443934-C-A 19282048-C-A ***
21469239-A-T 19307353-A-T ***
21714048-C-A 19552162-C-A ***
22159553-C-A 19997667-C-A ***
22529431-C-A 20367545-C-A ***
22865160-C-A 20703274-C-A ***
23006814-C-T 20844928-C-T ***
23042276-T-C 20880390-T-C ***
23437941-T-C 21276055-T-C ***
23440832-G-A 21278946-G-A ***
23526169-AAAAT-A 21364283-AAAAT-A 4×AAAT***
23532855-A-T 21370969-A-T ***
24363572-C-A 22217425-C-A ***
28591038-C-A 26444891-C-A ***
28817694-GAA-G 26671547-GAA-G ***
56839391-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.