Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > ZP149 > ZP176

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
336160
22310097-G-C 20148211-G-C DYZ19 A*
13694986-C-G 11539310-C-G A*
25891238-G-C 23745091-G-C P1_Y1 A*
28817876-G-A 26671729-G-A A*
6306317-C-T 6438276-C-T IR3_Dst A*
28817648-G-A 26671501-G-A A*
26079549-A-G 23933402-A-G P1_Y1 A*
7800008-T-C 7931967-T-C BY39865 YY+
22689601-C-G 20527715-C-G BY39874 YY+
19372280-T-C 17260400-T-C BY39873 YY+
22724717-A-G 20562831-A-G BY39875 YY+
13668077-A-G 11512401-A-G BY39868 +
15525204-T-C 13413324-T-C BY39872 YY+
17073228-C-G 14961348-C-G BY156625 YY+
19236258-C-T 17124378-C-T BY127549 YY+
2707817-T-C 2839776-T-C BY39863 YY+
22748750-ATGT-A 20586864-ATGT-A +
22964192-A-C 20802306-A-C BY39876 YY+
2885168-C-G 3017127-C-G BY39864 YY+
14088695-C-T 11967989-C-T BY39869 Y+
7215933-A-G 7347892-A-G BY63962 YY+
6824838-A-G 6956797-A-G BY61541 YY+
8890864-T-A 9022823-T-A BY39867 Y+
18224217-G-A 16112337-G-A BY121008 Y+
13752-G-T +
18391294-G-C 16279414-G-C P6_Gap +
9467116-TC-T 9629507-TC-T +
8744221-C-T 8876180-C-T BY39866 YY+
14438754-T-A 12318027-T-A BY39870 Y+
14503459-G-A 12391664-G-A BY39871 YY+
22280226-G-C 20118340-G-C DYZ19 *
13480300-A-G 11324624-A-G *
13677467-C-CGGAAT 11521791-C-CGGAAT 6×GGAAT*
18913921-A-AGATG 16802041-A-AGATG 4×GATG*
22253875-T-A 20091989-T-A DYZ19 *
15361883-C-A 13250003-C-A **
16084852-AAAACACT-A 13972972-AAAACACT-A **
15340568-G-T 13228687-G-T **
15320657-A-G 13208763-A-G **
15380310-CT-C 13268430-CT-C **
15565515-C-A 13453635-C-A **
15649991-G-A 13538111-G-A **
15401377-G-A 13289497-G-A **
15468421-G-T 13356541-G-T **
15249889-C-A 13137975-C-A **
15679793-G-T 13567913-G-T **
15906035-T-C 13794155-T-C **
16070575-C-A 13958695-C-A **
16828884-C-A 14717004-C-A **
16091220-A-T 13979340-A-T **
17470754-C-A 15358874-C-A **
18355270-T-A 16243390-T-A P6_Prx **
18355268-G-T 16243388-G-T P6_Prx **
18355259-C-A 16243379-C-A P6_Prx **
18192242-C-A 16080362-C-A **
18008701-T-TGA 15896821-T-TGA P7_Dst **
17884222-C-A 15772342-C-A **
17860000-T-A 15748120-T-A **
17826872-T-A 15714992-T-A **
17789581-C-T 15677701-C-T **
17751997-A-G 15640117-A-G **
17569028-G-C 15457148-G-C **
17219202-T-G 15107322-T-G **
16309566-A-G 14197686-A-G BY106850 **
17193160-C-A 15081280-C-A **
17157539-C-A 15045659-C-A **
17151454-A-T 15039574-A-T **
17046809-C-A 14934929-C-A **
17006654-A-G 14894774-A-G **
16828869-C-A 14716989-C-A **
16813993-C-A 14702113-C-A **
16777763-T-A 14665883-T-A **
16536008-C-A 14424128-C-A **
16506600-T-G 14394720-T-G **
16340971-C-A 14229091-C-A **
15169260-G-GCA 13057346-G-GCA 11×CA**
14421891-C-A 12301166-C-A **
14985114-C-A 12873182-C-A **
11034100-T-C **
13698851-T-C 11543175-T-C **
13509089-A-T 11353413-A-T **
13294710-G-T 11139034-G-T **
13268460-C-A 11112784-C-A **
13256131-G-A 11100455-G-A **
13248207-T-G 11092531-T-G **
11034943-T-G **
11034893-C-CA **
11034126-T-C **
11034117-C-T **
11034113-C-T **
11034093-C-T **
11646308-G-A **
11031597-A-G **
11030772-C-G **
11027741-C-T **
11027717-G-T **
11027712-C-A **
11027695-G-A **
11027673-T-G **
11024556-C-T **
11024548-AAT-A **
11014620-ATTCCATTCCATTCCT-A **
11014604-C-G **
13698875-C-A 11543199-C-A **
11646574-A-C **
14981647-G-A 12869723-G-A **
14114913-C-T 11994207-C-T **
14845287-A-G 12733353-A-G **
14787806-GTA-G 12675876-GTA-G 11×TA**
14780947-T-C 12669017-T-C **
14765181-C-A 12653250-C-A **
14724494-C-A 12612562-C-A **
14715450-TG-T 12603517-TG-T **
14527563-C-A 12415764-C-A **
14312227-C-A 12191521-C-A **
14285894-G-T 12165188-G-T **
14165732-T-C 12045026-T-C **
14119518-C-G 11998812-C-G **
14047253-C-A 11926547-C-A **
11646576-T-C **
14011298-G-T 11890592-G-T **
13941063-G-A 11820357-G-A **
13935750-T-C 11815044-T-C **
13926576-T-A 11805870-T-A **
13855736-A-C 11735030-A-C **
13809419-A-G 11688713-A-G **
11662636-C-A **
11648317-C-A **
11646601-G-T **
11646581-C-T **
11646577-G-A **
18355277-G-T 16243397-G-T P6_Prx **
25556058-GTT-G 23409911-GTT-G P1_gr1 16×T**
18614417-C-A 16502537-C-A **
23066283-A-G 20904397-A-G **
23520967-C-T 21359081-C-T **
23488869-AAAC-A 21326983-AAAC-A **
23311272-C-CTT 21149386-C-CTT 15×T**
23066354-A-T 20904468-A-T **
23066342-A-C 20904456-A-C **
23066329-A-T 20904443-A-T **
23066313-C-T 20904427-C-T **
23066311-A-G 20904425-A-G **
23066307-G-T 20904421-G-T **
23066306-T-C 20904420-T-C **
23066274-G-T 20904388-G-T **
23804340-G-A 21642454-G-A **
23066265-T-A 20904379-T-A **
23066262-T-C 20904376-T-C **
23019906-C-A 20858020-C-A **
22965282-G-T 20803396-G-T **
22961965-A-T 20800079-A-T **
22780874-C-T 20618988-C-T **
22729941-C-A 20568055-C-A **
22536965-A-C 20375079-A-C **
22356851-T-C 20194965-T-C DYZ19 **
22124132-C-A 19962246-C-A **
22113187-CAAAAA-C 19951301-CAAAAA-C 23×A**
23598059-C-A 21436173-C-A **
24362223-C-A 22216076-C-A **
22088929-G-A 19927043-G-A **
26059212-C-A 23913065-C-A P1_Y1 **
56822659-T-G **
56707321-ATTCAT-A **
28565755-G-T 26419608-G-T **
28478821-T-A 26332674-T-A **
28469476-G-T 26323329-G-T **
27732458-AT-A 25586311-AT-A P1_Y2 **
26463130-T-C 24316983-T-C P1_Y1 **
26463095-TTC-T 24316948-TTC-T P1_Y1 **
26358778-C-T 24212631-C-T P1_Y1 **
26059213-A-T 23913066-A-T P1_Y1 **
26059200-A-T 23913053-A-T P1_Y1 **
24407878-C-A 22261731-C-A **
25654563-A-T 23508416-A-T P1_b3 **
25556101-G-T 23409954-G-T P1_gr1 **
25556085-A-T 23409938-A-T P1_gr1 **
25356636-G-T 23210489-G-T P2_r2 **
25075766-A-G 22929619-A-G g1 **
24991565-G-T 22845418-G-T g1 **
24637401-T-TTC 22491254-T-TTC P3_t2 **
24611309-G-T 22465162-G-T P3_t2 **
24611280-G-T 22465133-G-T P3_t2 **
24611261-C-A 22465114-C-A P3_t2 **
24432630-A-T 22286483-A-T **
22103787-G-GT 19941901-G-GT 8×T**
22088922-T-C 19927036-T-C **
18636612-C-CTT 16524732-C-CTT 17×T**
19206741-TAAAAAA-T 17094861-TAAAAAA-T 29×A**
19790688-G-T 17678808-G-T P5_Prx **
19675622-GC-G 17563742-GC-G P5_Prx **
19594340-T-G 17482460-T-G P5_Prx **
19480034-C-A 17368154-C-A **
19407588-G-T 17295708-G-T **
19399854-C-A 17287974-C-A **
19301759-T-G 17189879-T-G **
19299150-T-G 17187270-T-G **
19274783-C-A 17162903-C-A **
19218248-T-G 17106368-T-G **
19112536-T-G 17000656-T-G **
19792662-T-G 17680782-T-G P5_Prx **
19086143-C-T 16974263-C-T **
11013331-C-A **
18989795-A-C 16877915-A-C **
18966024-T-A 16854144-T-A **
18965976-A-T 16854096-A-T **
18943054-C-A 16831174-C-A **
18923850-G-T 16811970-G-T **
18904981-C-A 16793101-C-A **
18869786-T-C 16757906-T-C **
18855554-C-A 16743674-C-A **
18650588-C-A 16538708-C-A **
19790713-A-T 17678833-A-T P5_Prx **
19792673-T-TC 17680793-T-TC P5_Prx **
22088914-A-G 19927028-A-G **
21306616-AAGAAAG-A 19144730-AAGAAAG-A **
22088909-A-G 19927023-A-G **
22088907-G-C 19927021-G-C **
22088897-T-C 19927011-T-C **
21912170-C-A 19750284-C-A **
21587732-C-A 19425846-C-A **
21585469-C-A 19423583-C-A **
21582551-G-T 19420665-G-T **
21552130-C-A 19390244-C-A **
21500146-T-G 19338260-T-G **
21371693-A-AAG 19209807-A-AAG **
21371671-A-C 19209785-A-C **
21118509-C-A 18956623-C-A **
20569367-G-T 18407481-G-T P5_Dst **
21046275-AT-A 18884389-AT-A 8×T**
20840208-C-A 18678322-C-A P4_Gap **
20730036-A-T 18568150-A-T P4_Prx **
20730031-A-T 18568145-A-T P4_Prx **
20730016-G-T 18568130-G-T P4_Prx **
20729999-T-G 18568113-T-G P4_Prx **
20729995-A-T 18568109-A-T P4_Prx **
20729802-A-C 18567916-A-C P4_Prx **
20671882-T-A 18509996-T-A P4_Prx **
20671867-C-A 18509981-C-A P4_Prx **
20603885-G-C 18441999-G-C P5_Dst **
11014602-C-A **
11024566-T-A **
11013242-C-T **
7087963-G-A 7219922-G-A **
7349103-T-G 7481062-T-G **
7341565-G-A 7473524-G-A **
7335743-T-G 7467702-T-G **
7311755-A-T 7443714-A-T **
7308368-C-A 7440327-C-A **
7264897-C-T 7396856-C-T **
7255030-C-A 7386989-C-A **
7235204-G-T 7367163-G-T **
7152923-C-T 7284882-C-T **
7095081-A-C 7227040-A-C **
7060995-G-A 7192954-G-A **
7469897-T-G 7601856-T-G IR1_L **
7028410-T-A 7160369-T-A **
6922603-T-A 7054562-T-A **
6874547-C-A 7006506-C-A **
6831941-T-G 6963900-T-G **
6755975-C-A 6887934-C-A **
6699537-C-A 6831496-C-A **
6646980-C-A 6778939-C-A **
6458234-C-T 6590193-C-T **
6146700-A-C 6278659-A-C IR3_Dst **
6028909-C-A 6160868-C-A **
5926904-A-G 6058863-A-G **
7383549-C-A 7515508-C-A **
7756405-T-G 7888364-T-G **
5782303-A-C 5914262-A-C **
9884978-A-C 10047369-A-C **
9991883-T-G 10154274-T-G **
9991875-A-G 10154266-A-G **
9991870-G-C 10154261-G-C **
9991869-G-A 10154260-G-A **
9962429-A-T 10124820-A-T **
9952509-T-G 10114900-T-G **
9944737-C-A 10107128-C-A **
9930618-T-G 10093009-T-G **
9929564-A-C 10091955-A-C **
9929470-A-C 10091861-A-C **
9852811-A-C 10015202-A-C **
8079489-AGGATAG-A 8211448-AGGATAG-A **
9830804-A-C 9993195-A-C **
9426781-A-C 9589172-A-C **
11006626-C-A **
9402488-A-G 9564879-A-G **
9172701-A-T 9335092-A-T **
9055415-C-A 9217806-C-A **
9013049-G-A 9175440-G-A **
9013048-A-C 9175439-A-C **
8156086-C-A 8288045-C-A **
8109852-C-A 8241811-C-A **
8102459-G-T 8234418-G-T **
5864520-C-A 5996479-C-A **
5755263-C-A 5887222-C-A **
10012847-T-A 10175238-T-A **
10797722-C-T **
19733314-A-C 17621434-A-C P5_Prx **
17264843-CTTATTATTA-C 15152963-CTTATTATTA-C 15×TTA**
10984515-A-T **
10984492-C-T **
15277054-C-A 13165143-C-A **
4898381-C-A 5030340-C-A **
10778309-T-C **
11027728-G-A **
11027720-T-A **
11027714-A-G **
10797683-ACTCCT-A **
2687075-C-A 2819034-C-A **
10987086-T-C **
11024536-T-G **
23579261-C-A 21417375-C-A **
16177221-C-A 14065341-C-A **
23355331-G-T 21193445-G-T **
10895750-G-C **
17628747-G-T 15516867-G-T **
22297846-A-T 20135960-A-T DYZ19 **
15420131-TC-T 13308251-TC-T **
15941317-C-T 13829437-C-T Y20890 **
21700552-C-A 19538666-C-A **
10024447-T-A 10186838-T-A **
2813009-A-G 2944968-A-G **
5667957-C-A 5799916-C-A **
3876187-G-T 4008146-G-T **
5667693-C-A 5799652-C-A **
5606615-T-A 5738574-T-A **
5264410-G-T 5396369-G-T **
5065383-C-A 5197342-C-A **
4996104-A-C 5128063-A-C **
4960987-C-A 5092946-C-A **
4887612-CAAAA-C 5019571-CAAAA-C 29×A**
4626905-A-C 4758864-A-C **
4620731-C-T 4752690-C-T **
4537955-C-A 4669914-C-A **
3876537-C-A 4008496-C-A **
3804722-A-G 3936681-A-G **
2859201-T-A 2991160-T-A **
3603300-C-A 3735259-C-A **
3405601-C-A 3537560-C-A **
3287134-C-A 3419093-C-A **
3267405-C-A 3399364-C-A **
3222827-G-T 3354786-G-T **
3218531-C-T 3350490-C-T **
3158976-A-AAAT 3290935-A-AAAT 6×AAT**
3151736-G-T 3283695-G-T **
3060452-A-T 3192411-A-T **
3012168-T-G 3144127-T-G **
2859605-C-A 2991564-C-A **
9991886-T-C 10154277-T-C **
9414573-C-A 9576964-C-A **
10624960-C-A **
10648096-C-CTGTT **
10888987-G-A **
10883903-A-G **
10873179-C-CA **
10873171-TG-T **
10873162-C-G **
10873147-C-A **
10873144-A-T **
10845753-C-G **
10842546-A-T **
10841682-T-A **
10841161-G-T **
10924442-C-A **
10834580-C-A **
10825445-C-A **
10800312-C-A **
10800301-A-ACTACG **
10800287-G-T **
10800275-CCCTAA-C **
10800267-T-C **
10800262-T-G **
10800246-ATTTT-A **
10800242-TT-C **
10906233-G-C **
10933477-C-T **
10798286-T-C **
10955281-C-G **
11000388-C-T **
10997713-C-G **
10995485-C-A **
10989866-C-CATTTA **
10989528-C-T **
10989519-C-A **
10984539-C-G **
10979542-C-A **
10963731-A-T **
10955305-C-A **
10955264-T-A **
10933482-C-T **
10955251-C-T **
10947482-C-A **
10947319-A-T **
10943449-TCCA-T **
10940528-C-A **
10940019-C-A **
10933540-C-A **
10933538-A-T **
10933525-C-A **
10933506-A-T **
10933498-A-T **
10799534-C-G **
10841421-G-T **
36590-T-A **
10756932-C-A **
10778389-C-A **
10778277-A-AACCCT **
10755306-C-CCAATA **
10778274-T-G **
10767807-A-T **
10772681-C-T **
10755244-T-G **
10772658-T-A **
10666518-C-T **
10683591-A-T **
10772678-T-C **
10683605-G-C **
10683756-C-A **
10751583-C-A **
10783839-C-A **
10772663-T-A **
10761903-T-TC **
10661503-C-A **
10648097-C-CT **
10648116-C-G **
10756905-T-A **
10792766-T-G **
10761000-C-T **
10761898-T-G **
10791097-C-A **
10756892-T-A **
10789904-T-C **
10784501-C-G **
10784367-A-ACTCAT **
10655640-A-G **
13212740-A-G 11057064-A-G ***
2694435-GCACA-G 2826394-GCACA-G 10×CA***
10947345-C-T ***
23590764-CAAA-C 21428878-CAAA-C 15×A***
2830969-A-T 2962928-A-T 10×T***
18614179-C-A 16502299-C-A ***
24013847-CTATATATATATATATATATATATATA-C,CTA 21867700-CTATATATATATATATATATATATATA-C,CTA 21×TA***
15303249-C-A 13191348-C-A ***
10955046-C-A ***
22812629-CTTTTTT-C 20650743-CTTTTTT-C 28×T***
16051847-TA-T 13939967-TA-T 10×A***
17170167-CTTTTTTT-C 15058287-CTTTTTTT-C 21×T***
11018773-T-A ***
28776110-C-A 26629963-C-A ***
11018779-C-G ***
11018781-C-T ***
15842525-A-ATTTC 13730645-A-ATTTC 8×TTTC***
10892524-A-T ***
18218895-A-G 16107015-A-G ***
3334646-G-T 3466605-G-T ***
18219223-CA-C 16107343-CA-C 8×A***
10663656-C-A ***
18244710-C-A 16132830-C-A ***
10973579-T-G ***
23435121-C-A 21273235-C-A ***
6989294-A-G 7121253-A-G ***
23188787-G-A 21026901-G-A ***
21653953-C-A 19492067-C-A ***
5219357-G-C 5351316-G-C ***
22108850-T-C 19946964-T-C ***
15578898-G-T 13467018-G-T ***
15532910-A-G 13421030-A-G ***
15399501-C-A 13287621-C-A ***
21797027-T-A 19635141-T-A ***
21691695-C-A 19529809-C-A ***
21555169-A-G 19393283-A-G ***
10849788-C-A ***
6631254-C-A 6763213-C-A ***
6674465-AT-A,ATT 6806424-AT-A,ATT 16×T***
6693797-C-A 6825756-C-A ***
15250834-C-A 13138920-C-A ***
7075240-CAA-C,CAAA 7207199-CAA-C,CAAA 17×A***
10794261-A-C,T ***
6915796-ATT-A,ATTT 7047755-ATT-A,ATTT 22×T***
10796677-CATT-C ***
10849577-C-A ***
7861366-C-A 7993325-C-A ***
13453733-C-T 11298057-C-T ***
10915923-C-T ***
2861534-C-CA 2993493-C-CA 25×A***
2960020-C-A 3091979-C-A ***
16410033-C-A 14298153-C-A ***
18913306-C-A 16801426-C-A ***
16199747-C-A 14087867-C-A ***
6983780-T-G 7115739-T-G ***
3272737-C-A 3404696-C-A FGC62744 ***
10894594-T-A ***
7866201-T-C 7998160-T-C ***
3804712-G-A 3936671-G-A ***
10892560-T-A ***
8213868-T-G 8345827-T-G ***
4129325-A-G 4261284-A-G ***
22658501-C-A 20496615-C-A ***
15685024-C-A 13573144-C-A ***
22525781-C-A 20363895-C-A ***
22427368-GG-C 20265482-GG-C DYZ19 ***
9047959-G-T 9210350-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 336160937220676352377533542
Used in age calculations937220676352377533542
Counts of SNPs1616
Variant counts last updated 2019-05-11 10:42:04.



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