LeSueur
BigY2: B13518MDKA Birth: Germany
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 B13518 |
---|---|---|---|---|---|---|---|---|
22257120-A-G | 20095234-A-G | DYZ19 | A* | |||||
13489571-G-A | 11333895-G-A | A* | ||||||
6222153-T-G | 6354112-T-G | IR3_Dst | A* | |||||
6267411-C-T | 6399370-C-T | IR3_Dst | A* | |||||
19903297-A-C | 17791417-A-C | P5_Prx | A* | |||||
19906456-C-G | 17794576-C-G | P5_Prx | A* | |||||
24282974-C-T | 22136827-C-T | P3_t1 | A* | |||||
25886562-T-C | 23740415-T-C | P1_Y1 | A* | |||||
9146921-G-C | 9309312-G-C | BY38843 | M9052 | Y | + | |||
22469572-G-T | 20307686-G-T | BY48622 | DYZ19 | + | ||||
6835714-T-C | 6967673-T-C | Y45352 | Y | Y | + | |||
7151269-C-T | 7283228-C-T | Y45698 | Y | Y | + | |||
7314720-C-A | 7446679-C-A | Y45894 | Y | Y | + | |||
8882614-A-G | 9014573-A-G | Y48051 | Y | + | ||||
9414744-G-A | 9577135-G-A | Y48359 | Y | Y | + | |||
13714767-G-T | 11559091-G-T | BY89593 | + | |||||
14174058-A-G | 12053352-A-G | Y49090 | Y | Y | + | |||
14294721-T-A | 12174015-T-A | Y49313 | Y | Y | + | |||
14830278-C-G | 12718345-C-G | Y49943 | Y | Y | + | |||
16199917-G-T | 14088037-G-T | Y51506 | Y | Y | + | |||
16250817-C-T | 14138937-C-T | Y51580 | Y | Y | + | |||
16603934-C-G | 14492054-C-G | Y52110 | Y | Y | + | |||
17524908-T-C | 15413028-T-C | Y53368 | Y | Y | + | |||
17593536-G-T | 15481656-G-T | Y53466 | Y | Y | + | |||
17647815-G-C | 15535935-G-C | Y53525 | Y | Y | + | |||
18772836-G-A | 16660956-G-A | Y54884 | Y | Y | + | |||
21509231-G-A | 19347345-G-A | Y56816 | Y | Y | + | |||
21675866-A-G | 19513980-A-G | BY134669 | Y | Y | + | |||
22303005-T-C | 20141119-T-C | BY216977 | DYZ19 | + | ||||
22474004-G-A | 20312118-G-A | BY53081 | DYZ19 | + | ||||
22512481-G-A | 20350595-G-A | BY225873 | DYZ19 | + | ||||
23047433-A-T | 20885547-A-T | Y58639 | Y | Y | + | |||
23191822-A-G | 21029936-A-G | Y58881 | Y | + | ||||
17805523-A-AGT | 15693643-A-AGT | 11×GT | * | |||||
9852977-GGAAGGAAA-G,GGAAGGAAG | 10015368-GGAAGGAAA-G,GGAAGGAAG | * | ||||||
13447496-T-A | 11291820-T-A | * | ||||||
13647416-G-GGAATT | 11491740-G-GGAATT | * | ||||||
14621674-C-CAG | 12509872-C-CAG | 9×AG | * | |||||
58972167-G-C | 56826020-G-C | ** | ||||||
26834669-A-G | 24688522-A-G | P1_g2 | ** | |||||
15756504-C-A | 13644624-C-A | FGC13113 | FGC13134 Y13788 | ** | ||||
13475435-G-A | 11319759-G-A | Z10462 | ** | |||||
15658067-T-TAC | 13546187-T-TAC | 9×AC | ** | |||||
22549944-C-A | 20388058-C-A | BY22100 | ** | |||||
14080035-G-GAT | 11959329-G-GAT | 29×AT | ** | |||||
6978237-C-A | 7110196-C-A | ** | ||||||
19189466-G-T | 17077586-G-T | ** | ||||||
28656249-C-A | 26510102-C-A | CTS12650 | ** | |||||
23831423-G-A | 21669537-G-A | BY16422 | ** | |||||
24415718-TTATATATA-T | 22269571-TTATATATA-T | 31×TA | ** | |||||
7310555-A-C | 7442514-A-C | ** | ||||||
5937632-CCACA-C | 6069591-CCACA-C | 14×CA | ** | |||||
26991316-T-C | 24845169-T-C | P1_r4 | ** | |||||
58972149-T-A | 56826002-T-A | ** | ||||||
13206784-CA-C | 11051108-CA-C | 14×A | ** | |||||
19318178-C-T | 17206298-C-T | 28×T | ** | |||||
17038319-CTT-C | 14926439-CTT-C | 13×T | ** | |||||
21383258-C-A | 19221372-C-A | ** | ||||||
10828826-ACCATT-A | ** | |||||||
17071190-CGAAA-C | 14959310-CGAAA-C | 6×GAAA | ** | |||||
16489969-C-A | 14378089-C-A | ** | ||||||
14236026-CAAAAA-C | 12115320-CAAAAA-C | 16×A | ** | |||||
28497107-C-A | 26350960-C-A | ** | ||||||
10935499-T-A | ** | |||||||
10990100-C-G | ** | |||||||
15475042-T-A | 13363162-T-A | ** | ||||||
10934771-A-T | ** | |||||||
19293763-T-C | 17181883-T-C | ** | ||||||
18779345-C-A | 16667465-C-A | ** | ||||||
2772319-C-T | 2904278-C-T | ** | ||||||
2943926-G-T | 3075885-G-T | ** | ||||||
2978898-C-A | 3110857-C-A | ** | ||||||
3011358-C-A | 3143317-C-A | ** | ||||||
3032384-C-A | 3164343-C-A | ** | ||||||
3051220-A-C | 3183179-A-C | ** | ||||||
3142318-C-A | 3274277-C-A | ** | ||||||
3146590-A-G | 3278549-A-G | ** | ||||||
3189298-C-A | 3321257-C-A | ** | ||||||
3205614-C-A | 3337573-C-A | ** | ||||||
3275468-G-T | 3407427-G-T | ** | ||||||
3308506-C-A | 3440465-C-A | ** | ||||||
3382849-G-T | 3514808-G-T | ** | ||||||
3389154-T-A | 3521113-T-A | ** | ||||||
3525308-C-A | 3657267-C-A | ** | ||||||
3596217-G-A | 3728176-G-A | FT100096 | ** | |||||
3804795-A-T | 3936754-A-T | ** | ||||||
3834638-G-T | 3966597-G-T | ** | ||||||
3836171-A-G | 3968130-A-G | ** | ||||||
3877143-T-C | 4009102-T-C | ** | ||||||
3931125-C-A | 4063084-C-A | ** | ||||||
3956795-G-T | 4088754-G-T | ** | ||||||
3987902-C-CTT | 4119861-C-CTT | 10×T | ** | |||||
4065331-T-C | 4197290-T-C | ** | ||||||
4138441-G-T | 4270400-G-T | ** | ||||||
4212608-G-T | 4344567-G-T | ** | ||||||
4244474-C-A | 4376433-C-A | ** | ||||||
4272578-A-G | 4404537-A-G | ** | ||||||
4286265-C-A | 4418224-C-A | ** | ||||||
4300374-C-A | 4432333-C-A | ** | ||||||
4357517-C-A | 4489476-C-A | ** | ||||||
4370505-G-T | 4502464-G-T | ** | ||||||
4408248-T-G | 4540207-T-G | ** | ||||||
4412464-C-A | 4544423-C-A | ** | ||||||
4447649-C-A | 4579608-C-A | ** | ||||||
4509317-A-G | 4641276-A-G | ** | ||||||
4553221-T-C | 4685180-T-C | ** | ||||||
4616415-T-G | 4748374-T-G | ** | ||||||
4634558-CA-C | 4766517-CA-C | 28×A | ** | |||||
4703774-A-T | 4835733-A-T | ** | ||||||
4847431-TA-T | 4979390-TA-T | 9×A | ** | |||||
4909107-CTT-C | 5041066-CTT-C | 12×T | ** | |||||
4958624-G-T | 5090583-G-T | ** | ||||||
4960062-C-A | 5092021-C-A | ** | ||||||
5185392-T-C | 5317351-T-C | ** | ||||||
5228256-G-T | 5360215-G-T | ** | ||||||
5246663-C-A | 5378622-C-A | ** | ||||||
5316933-C-A | 5448892-C-A | ** | ||||||
5335913-T-C | 5467872-T-C | ** | ||||||
5534684-C-A | 5666643-C-A | ** | ||||||
5695256-C-A | 5827215-C-A | ** | ||||||
5700056-C-A | 5832015-C-A | ** | ||||||
5763407-CT-C | 5895366-CT-C | ** | ||||||
5763478-T-C | 5895437-T-C | ** | ||||||
5775545-C-A | 5907504-C-A | ** | ||||||
5845275-G-T | 5977234-G-T | ** | ||||||
5858489-A-G | 5990448-A-G | ** | ||||||
5887247-G-AA | 6019206-G-AA | ** | ||||||
5889951-C-A | 6021910-C-A | ** | ||||||
5927201-G-C | 6059160-G-C | ** | ||||||
5927211-A-C | 6059170-A-C | ** | ||||||
6025181-C-A | 6157140-C-A | ** | ||||||
6135617-G-C | 6267576-G-C | ** | ||||||
6160902-G-T | 6292861-G-T | IR3_Dst | ** | |||||
6277760-G-C | 6409719-G-C | IR3_Dst | ** | |||||
6293412-G-A | 6425371-G-A | IR3_Dst | ** | |||||
6402795-C-A | 6534754-C-A | ** | ||||||
6434532-C-A | 6566491-C-A | ** | ||||||
6465845-C-A | 6597804-C-A | ** | ||||||
6506088-C-A | 6638047-C-A | ** | ||||||
6534453-G-A | 6666412-G-A | ** | ||||||
6580532-C-A | 6712491-C-A | ** | ||||||
6664438-T-C | 6796397-T-C | ** | ||||||
6698882-T-C | 6830841-T-C | ** | ||||||
6774138-C-A | 6906097-C-A | ** | ||||||
6798913-C-A | 6930872-C-A | ** | ||||||
6816713-CAAAAAAA-C | 6948672-CAAAAAAA-C | 19×A | ** | |||||
6911333-C-G | 7043292-C-G | ** | ||||||
6911441-T-A | 7043400-T-A | ** | ||||||
6922608-C-A | 7054567-C-A | ** | ||||||
7039592-C-A | 7171551-C-A | ** | ||||||
7043418-G-T | 7175377-G-T | ** | ||||||
7061782-A-T | 7193741-A-T | ** | ||||||
7085407-C-A | 7217366-C-A | ** | ||||||
7095185-C-A | 7227144-C-A | ** | ||||||
7138898-C-A | 7270857-C-A | ** | ||||||
7150651-C-A | 7282610-C-A | ** | ||||||
7185526-T-C | 7317485-T-C | ** | ||||||
7211175-T-G | 7343134-T-G | ** | ||||||
7217406-C-A | 7349365-C-A | ** | ||||||
7217407-A-G | 7349366-A-G | ** | ||||||
7217409-C-A | 7349368-C-A | ** | ||||||
7217412-A-T | 7349371-A-T | ** | ||||||
7217429-G-A | 7349388-G-A | ** | ||||||
7217433-T-G | 7349392-T-G | ** | ||||||
7217440-A-G | 7349399-A-G | ** | ||||||
7217449-T-C | 7349408-T-C | ** | ||||||
7235863-G-A | 7367822-G-A | ** | ||||||
7235867-T-G | 7367826-T-G | ** | ||||||
7257859-C-A | 7389818-C-A | ** | ||||||
7286937-C-A | 7418896-C-A | ** | ||||||
7322928-C-A | 7454887-C-A | ** | ||||||
7345685-T-C | 7477644-T-C | ** | ||||||
7384644-T-C | 7516603-T-C | ** | ||||||
7433551-A-T | 7565510-A-T | ** | ||||||
7475103-C-A | 7607062-C-A | IR1_L | ** | |||||
7524702-G-A | 7656661-G-A | ** | ||||||
7621159-A-T | 7753118-A-T | ** | ||||||
8166694-A-G | 8298653-A-G | ** | ||||||
8238295-G-T | 8370254-G-T | ** | ||||||
8399019-C-T | 8530978-C-T | ** | ||||||
8690470-C-A | 8822429-C-A | ** | ||||||
8738898-C-A | 8870857-C-A | ** | ||||||
8811243-C-A | 8943202-C-A | ** | ||||||
8822568-A-G | 8954527-A-G | ** | ||||||
8849961-C-A | 8981920-C-A | ** | ||||||
9125478-G-T | ** | |||||||
8980538-G-C | 9142929-G-C | ** | ||||||
9025248-G-T | 9187639-G-T | ** | ||||||
9048042-C-A | 9210433-C-A | ** | ||||||
9444771-C-A | 9607162-C-A | ** | ||||||
9577170-A-T | 9739561-A-T | IR3_Prx | ** | |||||
9577179-T-A | 9739570-T-A | IR3_Prx | ** | |||||
9735643-C-A | 9898034-C-A | IR3_Prx | ** | |||||
9885119-C-A | 10047510-C-A | ** | ||||||
9939831-C-T | 10102222-C-T | ** | ||||||
9940096-T-C | 10102487-T-C | ** | ||||||
9996099-C-A | 10158490-C-A | ** | ||||||
9996319-C-A | 10158710-C-A | ** | ||||||
10022090-C-A | 10184481-C-A | ** | ||||||
10023767-C-T | 10186158-C-T | ** | ||||||
10045284-A-C | 10207675-A-C | ** | ||||||
10079613-C-A | 10242004-C-A | ** | ||||||
10651565-C-A | ** | |||||||
10661266-C-G | ** | |||||||
10661521-C-A | ** | |||||||
10663638-A-G | ** | |||||||
10672926-C-A | ** | |||||||
10685609-C-A | ** | |||||||
10685726-C-A | ** | |||||||
10689109-A-T | ** | |||||||
10689119-A-C | ** | |||||||
10752139-G-T | ** | |||||||
10755388-ACTCAT-A | ** | |||||||
10776622-C-G | ** | |||||||
10776631-C-G | ** | |||||||
10779683-C-T | ** | |||||||
10781124-C-A | ** | |||||||
10781500-G-T | FTA22541 | ** | ||||||
10783716-C-A | ** | |||||||
10789024-C-G | ** | |||||||
10792656-T-C | ** | |||||||
10792867-C-A | ** | |||||||
10796831-C-A | ** | |||||||
10803915-C-A | ** | |||||||
10814705-A-G | ** | |||||||
10826583-C-CTATTG | ** | |||||||
10833257-C-T | ** | |||||||
10836604-C-A | ** | |||||||
10876963-C-A | ** | |||||||
10885127-C-G | ** | |||||||
10889458-C-A | ** | |||||||
10907435-T-A | ** | |||||||
10907525-G-T | ** | |||||||
10909901-T-A | ** | |||||||
10919774-C-A | ** | |||||||
10930183-C-A | ** | |||||||
10933602-T-C | ** | |||||||
10937469-C-A | ** | |||||||
10953677-C-A | ** | |||||||
10956078-T-C | ** | |||||||
10969530-C-A | ** | |||||||
10983172-A-G | FT439146 | ** | ||||||
10983281-C-A | ** | |||||||
10987171-C-A | ** | |||||||
10987740-A-C | ** | |||||||
10990086-T-C | FT92183 | ** | ||||||
10990132-A-C | ** | |||||||
10990133-T-TTCCAC | ** | |||||||
10994174-C-A | ** | |||||||
10998411-G-GATGGA | ** | |||||||
11004202-C-A | ** | |||||||
11007408-C-A | ** | |||||||
11020749-C-A | ** | |||||||
11023034-C-T | ** | |||||||
11025436-TTCCACTCCAC-T | ** | |||||||
11034744-C-A | ** | |||||||
11034749-C-A | ** | |||||||
13196509-C-A | 11040833-C-A | ** | ||||||
13255568-C-A | 11099892-C-A | ** | ||||||
13255841-C-A | 11100165-C-A | ** | ||||||
13276719-G-A | 11121043-G-A | ** | ||||||
13279056-C-A | 11123380-C-A | ** | ||||||
13302377-G-A | 11146701-G-A | ** | ||||||
13411876-C-A | 11256200-C-A | ** | ||||||
13461169-T-A | 11305493-T-A | ** | ||||||
13461215-A-G | 11305539-A-G | ** | ||||||
13487038-G-A | 11331362-G-A | ** | ||||||
13493181-C-A | 11337505-C-A | ** | ||||||
13502699-C-A | 11347023-C-A | ** | ||||||
13511649-C-T | 11355973-C-T | ** | ||||||
13525684-C-A | 11370008-C-A | ** | ||||||
13593891-C-A | 11438215-C-A | ** | ||||||
13643965-G-A | 11488289-G-A | ** | ||||||
11647076-G-A | ** | |||||||
11656992-C-A | ** | |||||||
11666142-G-A | FT220668 | ** | ||||||
11666165-A-G | ** | |||||||
13855010-T-C | 11734304-T-C | ** | ||||||
13870634-T-G | 11749928-T-G | ** | ||||||
13873792-T-C | 11753086-T-C | ** | ||||||
13878775-T-A | 11758069-T-A | ** | ||||||
13881251-C-A | 11760545-C-A | ** | ||||||
13881413-C-A | 11760707-C-A | ** | ||||||
13885913-C-A | 11765207-C-A | ** | ||||||
13895840-C-A | 11775134-C-A | ** | ||||||
13898665-GA-G | 11777959-GA-G | ** | ||||||
13919171-T-A | 11798465-T-A | ** | ||||||
14017356-C-A | 11896650-C-A | ** | ||||||
14032312-C-A | 11911606-C-A | ** | ||||||
14041229-C-A | 11920523-C-A | ** | ||||||
14052902-T-C | 11932196-T-C | ** | ||||||
14053179-C-A | 11932473-C-A | ** | ||||||
14056652-A-T | 11935946-A-T | ** | ||||||
14069033-C-A | 11948327-C-A | ** | ||||||
14088991-C-A | 11968285-C-A | ** | ||||||
14097945-ATTTTT-A | 11977239-ATTTTT-A | 23×T | ** | |||||
14158119-G-T | 12037413-G-T | ** | ||||||
14159635-C-A | 12038929-C-A | ** | ||||||
14160383-G-T | 12039677-G-T | ** | ||||||
14198434-C-A | 12077728-C-A | Y90586 | ** | |||||
14219671-C-A | 12098965-C-A | ** | ||||||
14314274-C-A | 12193568-C-A | ** | ||||||
14352579-C-CTT | 12231874-C-CTT | 14×T | ** | |||||
14352752-C-A | 12232047-C-A | ** | ||||||
14358206-C-T | 12237501-C-T | ** | ||||||
14373624-C-A | 12252920-C-A | ** | ||||||
14459953-C-T | 12339226-C-T | ** | ||||||
14462583-G-T | 12341856-G-T | ** | ||||||
14499962-C-A | 12388167-C-A | ** | ||||||
14518424-C-A | 12406625-C-A | ** | ||||||
14527026-C-A | 12415227-C-A | ** | ||||||
14566677-C-A | 12454877-C-A | ** | ||||||
14574526-C-A | 12462726-C-A | ** | ||||||
14620270-G-A | 12508468-G-A | ** | ||||||
14661424-C-A | 12549489-C-A | ** | ||||||
14776970-C-A | 12665039-C-A | ** | ||||||
14802794-C-A | 12690865-C-A | ** | ||||||
14858776-T-C | 12746842-T-C | ** | ||||||
14888141-A-G | 12776207-A-G | ** | ||||||
14926460-C-T | 12814525-C-T | ** | ||||||
14992546-C-A | 12880631-C-A | ** | ||||||
15011629-C-A | 12899717-C-A | ** | ||||||
15115370-C-A | 13003457-C-A | ** | ||||||
15131686-C-A | 13019773-C-A | ** | ||||||
15177843-C-A | 13065929-C-A | ** | ||||||
15183888-C-A | 13071974-C-A | ** | ||||||
15276385-A-T | 13164474-A-T | ** | ||||||
15285972-C-A | 13174071-C-A | ** | ||||||
15287217-C-T | 13175316-C-T | ** | ||||||
15333534-G-T | 13221652-G-T | ** | ||||||
15475028-C-T | 13363148-C-T | M7293 | ** | |||||
15475041-C-G | 13363161-C-G | ** | ||||||
15541690-C-A | 13429810-C-A | ** | ||||||
15541726-C-A | 13429846-C-A | ** | ||||||
15619317-T-A | 13507437-T-A | ** | ||||||
15684652-C-A | 13572772-C-A | ** | ||||||
15763204-G-T | 13651324-G-T | ** | ||||||
15894502-C-A | 13782622-C-A | ** | ||||||
15931820-T-A | 13819940-T-A | ** | ||||||
15931840-G-T | 13819960-G-T | ** | ||||||
15944249-C-A | 13832369-C-A | ** | ||||||
15946597-C-A | 13834717-C-A | ** | ||||||
15995408-C-A | 13883528-C-A | ** | ||||||
16033461-C-A | 13921581-C-A | ** | ||||||
16033648-C-A | 13921768-C-A | ** | ||||||
16060468-C-T | 13948588-C-T | ** | ||||||
16060477-C-G | 13948597-C-G | ** | ||||||
16147479-A-AC | 14035599-A-AC | P8_Dst | ** | |||||
16171552-C-A | 14059672-C-A | ** | ||||||
16179699-C-A | 14067819-C-A | ** | ||||||
16220705-C-A | 14108825-C-A | ** | ||||||
16297439-G-A | 14185559-G-A | ** | ||||||
16413559-C-A | 14301679-C-A | ** | ||||||
16465536-C-A | 14353656-C-A | ** | ||||||
16490884-C-A | 14379004-C-A | ** | ||||||
16491479-C-A | 14379599-C-A | FT1939 | ** | |||||
16515915-T-C | 14404035-T-C | ** | ||||||
16522360-A-T | 14410480-A-T | ** | ||||||
16522544-C-A | 14410664-C-A | ** | ||||||
16619105-C-A | 14507225-C-A | ** | ||||||
16624588-T-A | 14512708-T-A | ** | ||||||
16707460-G-C | 14595580-G-C | ** | ||||||
16785956-C-A | 14674076-C-A | ** | ||||||
16968150-C-CA | 14856270-C-CA | 26×A | ** | |||||
17030852-T-C | 14918972-T-C | ** | ||||||
17083215-C-A | 14971335-C-A | ** | ||||||
17095575-G-T | 14983695-G-T | ** | ||||||
17270561-C-A | 15158681-C-A | ** | ||||||
17512579-C-A | 15400699-C-A | ** | ||||||
17552002-T-A | 15440122-T-A | ** | ||||||
17561739-AAGC-A | 15449859-AAGC-A | 5×AGC | ** | |||||
17567320-C-T | 15455440-C-T | ** | ||||||
17568445-C-A | 15456565-C-A | ** | ||||||
17597901-C-A | 15486021-C-A | ** | ||||||
17598007-G-A | 15486127-G-A | ** | ||||||
17667045-T-C | 15555165-T-C | ** | ||||||
17676463-T-TAA | 15564583-T-TAA | 11×A | ** | |||||
17722978-G-T | 15611098-G-T | ** | ||||||
17737662-C-A | 15625782-C-A | ** | ||||||
17775066-C-A | 15663186-C-A | ** | ||||||
17794206-CTCTT-C | 15682326-CTCTT-C | ** | ||||||
17826205-CA-C | 15714325-CA-C | ** | ||||||
17829097-T-A | 15717217-T-A | ** | ||||||
17838797-T-C | 15726917-T-C | ** | ||||||
17916589-C-A | 15804709-C-A | FT102443 | ** | |||||
18086114-A-G | 15974234-A-G | ** | ||||||
18138276-C-A | 16026396-C-A | FTB82611 | ** | |||||
18370848-T-TC | 16258968-T-TC | P6_Prx | ** | |||||
18381830-C-A | 16269950-C-A | P6_Gap | ** | |||||
18403215-C-A | 16291335-C-A | P6_Gap | ** | |||||
18454872-T-G | 16342992-T-G | P6_Dst | ** | |||||
18454947-CTT-C | 16343067-CTT-C | P6_Dst | ** | |||||
19012485-C-A | 16900605-C-A | ** | ||||||
19019853-C-A | 16907973-C-A | ** | ||||||
19052096-C-A | 16940216-C-A | ** | ||||||
19083020-G-T | 16971140-G-T | ** | ||||||
19129070-C-T | 17017190-C-T | ** | ||||||
19377169-GGAAA-G | 17265289-GGAAA-G | 4×GAAA | ** | |||||
19459382-C-T | 17347502-C-T | ** | ||||||
19465735-C-A | 17353855-C-A | ** | ||||||
19539673-C-A | 17427793-C-A | ** | ||||||
19557374-A-T | 17445494-A-T | ** | ||||||
19692991-T-TA | 17581111-T-TA | P5_Prx | ** | |||||
19763365-A-AG | 17651485-A-AG | P5_Prx | ** | |||||
20019186-T-TC | 17907306-T-TC | P5_Prx | ** | |||||
20110581-A-G | 17998701-A-G | P5_Dst | ** | |||||
20110732-G-T | 17998852-G-T | P5_Dst | ** | |||||
20362565-T-TC | 18200679-T-TC | P5_Dst | ** | |||||
20433630-A-G | 18271744-A-G | P5_Dst | ** | |||||
21054666-T-A | 18892780-T-A | ** | ||||||
21118661-C-A | 18956775-C-A | ** | ||||||
21386387-C-A | 19224501-C-A | ** | ||||||
21388653-CT-C | 19226767-CT-C | ** | ||||||
21388655-CT-C | 19226769-CT-C | ** | ||||||
21409082-C-T | 19247196-C-T | FT213404 | ** | |||||
21544745-T-A | 19382859-T-A | ** | ||||||
21553245-G-T | 19391359-G-T | ** | ||||||
21677023-G-A | 19515137-G-A | ** | ||||||
21956074-T-A | 19794188-T-A | ** | ||||||
21967867-G-T | 19805981-G-T | ** | ||||||
22240970-C-A | 20079084-C-A | DYZ19 | ** | |||||
22240975-G-T | 20079089-G-T | DYZ19 | ** | |||||
22300569-G-T | 20138683-G-T | BY11100 | DYZ19 | ** | ||||
22461040-C-T | 20299154-C-T | DYZ19 | ** | |||||
22483961-C-G | 20322075-C-G | DYZ19 | ** | |||||
22487872-C-A | 20325986-C-A | DYZ19 | ** | |||||
22487878-T-G | 20325992-T-G | DYZ19 | ** | |||||
22547185-T-C | 20385299-T-C | ** | ||||||
22765688-G-GA | 20603802-G-GA | 9×A | ** | |||||
22775377-C-A | 20613491-C-A | ** | ||||||
23005509-G-C | 20843623-G-C | ** | ||||||
23009143-C-A | 20847257-C-A | ** | ||||||
23128602-A-G | 20966716-A-G | ** | ||||||
23176952-C-A | 21015066-C-A | ** | ||||||
23252654-C-A | 21090768-C-A | ** | ||||||
23285423-T-C | 21123537-T-C | ** | ||||||
23291220-C-A | 21129334-C-A | ** | ||||||
23311261-C-T | 21149375-C-T | ** | ||||||
23316070-G-A | 21154184-G-A | ** | ||||||
23341840-T-A | 21179954-T-A | ** | ||||||
23372219-CTTT-C | 21210333-CTTT-C | 13×T | ** | |||||
23516567-A-T | 21354681-A-T | ** | ||||||
23633397-T-G | 21471511-T-G | ** | ||||||
23831433-A-G | 21669547-A-G | ** | ||||||
23831446-T-G | 21669560-T-G | ** | ||||||
21755291-G-T | ** | |||||||
23952970-G-A | 21806823-G-A | ** | ||||||
23952972-A-C | 21806825-A-C | ** | ||||||
24421095-A-G | 22274948-A-G | ** | ||||||
24472421-GTTTTTT-G | 22326274-GTTTTTT-G | 25×T | ** | |||||
24512811-C-A | 22366664-C-A | ** | ||||||
25099903-C-A | 22953756-C-A | g1 | ** | |||||
25939832-G-T | 23793685-G-T | P1_Y1 | ** | |||||
26328861-C-A | 24182714-C-A | P1_Y1 | ** | |||||
26699226-A-C | 24553079-A-C | P1_g2 | ** | |||||
26899391-A-T | 24753244-A-T | P1_r3 | ** | |||||
26899397-A-T | 24753250-A-T | P1_r3 | ** | |||||
26899410-A-G | 24753263-A-G | P1_r3 | ** | |||||
26899419-G-A | 24753272-G-A | P1_r3 | ** | |||||
26899436-T-A | 24753289-T-A | P1_r3 | ** | |||||
26899442-T-A | 24753295-T-A | P1_r3 | ** | |||||
26899454-T-A | 24753307-T-A | P1_r3 | ** | |||||
27216729-C-A | 25070582-C-A | P1_g3 | ** | |||||
27535295-G-A | 25389148-G-A | P1_Y2 | ** | |||||
27570857-C-A | 25424710-C-A | P1_Y2 | ** | |||||
27583151-G-T | 25437004-G-T | P1_Y2 | ** | |||||
27647584-C-A | 25501437-C-A | P1_Y2 | ** | |||||
27737605-AT-A | 25591458-AT-A | P1_Y2 | ** | |||||
27762782-C-CAA | 25616635-C-CAA | P1_Y2 | ** | |||||
28496934-C-A | 26350787-C-A | ** | ||||||
28500719-C-A | 26354572-C-A | ** | ||||||
28506261-C-A | 26360114-C-A | ** | ||||||
28506327-T-C | 26360180-T-C | ** | ||||||
28507454-T-A | 26361307-T-A | ** | ||||||
28601607-C-A | 26455460-C-A | ** | ||||||
28644425-C-A | 26498278-C-A | ** | ||||||
28706155-T-C | 26560008-T-C | ** | ||||||
28708179-G-GT | 26562032-G-GT | 9×T | ** | |||||
28781514-C-A | 26635367-C-A | ** | ||||||
56825991-A-T | ** | |||||||
56826008-T-C | ** | |||||||
56826016-A-C | ** | |||||||
56826029-C-T | ** | |||||||
56835915-A-AGTCCACTCGT | ** | |||||||
56840911-A-T | ** | |||||||
56843102-T-C | ** | |||||||
56848080-C-G | ** | |||||||
22634820-C-T | 20472934-C-T | 14×T | *** | |||||
22005300-CTT-C | 19843414-CTT-C | 13×T | *** | |||||
58982491-C-A,T | 56836344-C-A,T | *** | ||||||
18636612-CTTTTT-C | 16524732-CTTTTT-C | 17×T | *** | |||||
16581436-TAA-T | 14469556-TAA-T | 15×A | *** | |||||
14992925-A-G | 12881010-A-G | *** | ||||||
16409013-CTTTT-C | 14297133-CTTTT-C | 18×T | *** | |||||
58979255-C-A | 56833108-C-A | *** | ||||||
14657601-G-GA | 12545666-G-GA | 10×A | *** | |||||
10921519-T-G | *** | |||||||
10921531-CATTCT-C | *** | |||||||
10921542-A-T | *** | |||||||
10980757-T-C | *** | |||||||
14245211-AGAAGGAAGGAAGGAAG-A | 12124505-AGAAGGAAGGAAGGAAG-A | 13×GAAG | *** | |||||
13856660-TTGGAA-T | 11735954-TTGGAA-T | 5×TGGAA | *** | |||||
10821847-C-G | *** | |||||||
2885618-G-T | 3017577-G-T | *** | ||||||
5011280-C-A | 5143239-C-A | *** | ||||||
6368815-G-T | 6500774-G-T | FT198103 | *** | |||||
6768762-G-GAA | 6900721-G-GAA | 17×A | *** | |||||
7142488-C-A | 7274447-C-A | *** | ||||||
7142495-G-A | 7274454-G-A | *** | ||||||
7142741-C-T | 7274700-C-T | *** | ||||||
8398840-CAA-C,CAAA | 8530799-CAA-C,CAAA | 17×A | *** | |||||
8428933-A-C | 8560892-A-C | *** | ||||||
8901177-C-A | 9033136-C-A | A15654 | *** | |||||
9978955-C-A | 10141346-C-A | *** | ||||||
10746965-TTCAAC-T,TTCCAC | *** | |||||||
10807363-TCCAC-T | *** | |||||||
10921505-C-A | *** | |||||||
10971928-A-T | *** | |||||||
10973994-C-A | *** | |||||||
10980657-C-A | *** | |||||||
13453379-C-A | 11297703-C-A | *** | ||||||
13489492-G-T | 11333816-G-T | *** | ||||||
13611072-G-A | 11455396-G-A | *** | ||||||
14485221-GT-G | 12364490-GT-G | *** | ||||||
14866157-G-A | 12754227-G-A | *** | ||||||
14866159-G-A | 12754229-G-A | *** | ||||||
15157878-AAAAG-A | 13045964-AAAAG-A | *** | ||||||
13228501-CTT-C,CT | 19×T | *** | ||||||
15557008-C-A | 13445128-C-A | *** | ||||||
15999765-G-T | 13887885-G-T | *** | ||||||
16095430-T-C | 13983550-T-C | *** | ||||||
17180153-AACACAC-A | 15068273-AACACAC-A | 23×AC | *** | |||||
17997316-C-T | 15885436-C-T | FT154495 | P7_Gap | *** | ||||
18659940-G-T | 16548060-G-T | *** | ||||||
19272231-T-C | 17160351-T-C | FT331244 | *** | |||||
19415891-C-A | 17304011-C-A | *** | ||||||
20640328-G-T | 18478442-G-T | P4_Prx | *** | |||||
22441863-C-T | 20279977-C-T | DYZ19 | *** | |||||
23439837-G-T | 21277951-G-T | *** | ||||||
28805794-A-G | 26659647-A-G | *** | ||||||
56830007-C-A | *** | |||||||
56833119-TCCACTCCATC-T,TCCATTCCATT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.