Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > Z18000 > Z36749 > Z36748 > Y31390

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	BigY2 B1417	Manual Edits
18273819-G-A	16161939-G-A			P6_Prx				A*
25919223-C-T	23773076-C-T			P1_Y1				A*
25972345-C-T	23826198-C-T			P1_Y1				A*
8017686-C-A	8149645-C-A		BY69386		Y	Y		+
9460417-G-C	9622808-G-C		BY79556		Y	Y		+
13208543-G-A	11052867-G-A		BY84395					+
19269448-C-T	17157568-C-T	Y13006	Y30843		Y	Y		+
23184014-G-T	21022128-G-T		BY143626		Y			+
22253715-G-C	20091829-G-C			DYZ19				*
22234175-G-T	20072289-G-T			DYZ19				**
16050996-C-T	13939116-C-T						16×TCTT	**
8901038-G-A	9032997-G-A							**
14485918-G-A	12365187-G-A		CTS2790					**
13713447-A-T	11557771-A-T							**
22164538-ACT-A	20002652-ACT-A							**
19429514-C-T	17317634-C-T							**
22241585-C-T	20079699-C-T			DYZ19				**
19189614-AT-A	17077734-AT-A							**
26328670-A-C	24182523-A-C			P1_Y1				**
18687528-A-G	16575648-A-G							**
14785570-G-T	12673640-G-T							**
23128686-C-A	20966800-C-A							**
19189592-C-T	17077712-C-T							**
	11025279-A-C							**
	11025284-A-T							**
2649770-T-C	2781729-T-C							**
2649800-CT-C	2781759-CT-C							**
2699613-G-A	2831572-G-A							**
2718905-G-T	2850864-G-T							**
2729790-G-T	2861749-G-T							**
2758332-C-A	2890291-C-A							**
2885793-C-A	3017752-C-A							**
2888858-G-A	3020817-G-A		Y81736					**
2888867-T-G	3020826-T-G							**
3011403-C-A	3143362-C-A							**
3286634-G-T	3418593-G-T							**
3334378-G-A	3466337-G-A							**
3385142-A-G	3517101-A-G							**
3407326-A-G	3539285-A-G							**
3493009-C-A	3624968-C-A							**
3493071-T-C	3625030-T-C							**
3560251-C-T	3692210-C-T							**
3560284-A-G	3692243-A-G							**
3640815-C-T	3772774-C-T							**
3697069-G-T	3829028-G-T							**
3706744-G-T	3838703-G-T							**
3762840-T-C	3894799-T-C							**
3846855-C-A	3978814-C-A							**
3846872-C-A	3978831-C-A							**
3875978-C-A	4007937-C-A							**
3926970-C-A	4058929-C-A							**
3986857-A-G	4118816-A-G							**
4049173-T-C	4181132-T-C							**
4065873-A-G	4197832-A-G							**
4065955-A-C	4197914-A-C							**
4094470-A-T	4226429-A-T							**
4134133-G-T	4266092-G-T							**
4178912-C-A	4310871-C-A							**
4201094-C-A	4333053-C-A							**
4208988-C-A	4340947-C-A							**
4215545-T-G	4347504-T-G							**
4371006-C-A	4502965-C-A							**
4460097-C-A	4592056-C-A							**
4460109-T-C	4592068-T-C							**
4470532-A-C	4602491-A-C							**
4504764-C-G	4636723-C-G							**
4505214-T-G	4637173-T-G							**
4505238-G-C	4637197-G-C							**
4509372-C-A	4641331-C-A							**
4509381-A-G	4641340-A-G							**
4509442-A-G	4641401-A-G							**
4511683-G-GA	4643642-G-GA						10×A	**
4527382-A-G	4659341-A-G							**
4567010-G-T	4698969-G-T							**
4672223-C-A	4804182-C-A							**
4725145-G-T	4857104-G-T							**
4902080-C-A	5034039-C-A							**
4995445-C-A	5127404-C-A							**
5030961-G-T	5162920-G-T							**
5035632-C-A	5167591-C-A							**
5100280-C-A	5232239-C-A							**
5204511-A-G	5336470-A-G							**
5213923-C-T	5345882-C-T							**
5310013-C-A	5441972-C-A							**
5426415-A-C	5558374-A-C							**
5459425-C-A	5591384-C-A							**
5459992-C-A	5591951-C-A							**
5586600-G-T	5718559-G-T							**
5612841-C-A	5744800-C-A							**
5645185-T-G	5777144-T-G							**
5645196-G-T	5777155-G-T							**
5669917-C-A	5801876-C-A							**
5761214-A-C	5893173-A-C							**
5785278-G-A	5917237-G-A							**
5824027-A-T	5955986-A-T							**
5829822-T-C	5961781-T-C							**
5830179-C-A	5962138-C-A							**
5864571-A-C	5996530-A-C							**
5874304-C-A	6006263-C-A							**
5888425-C-A	6020384-C-A							**
6177458-A-G	6309417-A-G			IR3_Dst				**
6177478-C-T	6309437-C-T			IR3_Dst				**
6178864-A-G	6310823-A-G			IR3_Dst				**
6231166-T-A	6363125-T-A			IR3_Dst				**
6238682-C-A	6370641-C-A			IR3_Dst				**
6355559-C-T	6487518-C-T							**
6359669-G-T	6491628-G-T							**
6367958-C-A	6499917-C-A							**
6454755-C-A	6586714-C-A							**
6461059-A-G	6593018-A-G							**
6510610-T-C	6642569-T-C							**
6582220-C-A	6714179-C-A							**
6582354-C-A	6714313-C-A							**
6611520-C-A	6743479-C-A							**
6648655-C-A	6780614-C-A							**
6682175-C-A	6814134-C-A							**
6694896-G-A	6826855-G-A							**
6720478-C-A	6852437-C-A							**
6730282-C-A	6862241-C-A		FTB75348					**
6749097-T-C	6881056-T-C							**
6751561-C-A	6883520-C-A							**
6757322-C-A	6889281-C-A		Y131739					**
6825552-G-T	6957511-G-T							**
6881263-C-A	7013222-C-A							**
6911230-C-A	7043189-C-A							**
6911381-C-A	7043340-C-A							**
6992499-C-A	7124458-C-A							**
6992571-G-T	7124530-G-T							**
6996712-G-TT	7128671-G-TT							**
7081750-A-T	7213709-A-T							**
7099212-A-G	7231171-A-G							**
7115986-G-A	7247945-G-A							**
7116018-A-T	7247977-A-T							**
7135411-G-A	7267370-G-A							**
7165393-C-T	7297352-C-T							**
7211217-C-A	7343176-C-A							**
7225440-C-T	7357399-C-T							**
7235196-C-A	7367155-C-A							**
7259146-C-A	7391105-C-A							**
7269315-C-A	7401274-C-A							**
7269673-A-G	7401632-A-G							**
7322693-C-A	7454652-C-A							**
7335745-G-T	7467704-G-T							**
7335749-C-T	7467708-C-T							**
7360643-T-C	7492602-T-C							**
7364397-CA-C	7496356-CA-C							**
7390172-A-G	7522131-A-G							**
7417554-C-T	7549513-C-T							**
7437523-C-A	7569482-C-A							**
7577715-T-C	7709674-T-C							**
7621759-C-A	7753718-C-A							**
7621904-C-A	7753863-C-A							**
7656891-G-T	7788850-G-T							**
7664618-C-A	7796577-C-A							**
7724653-C-A	7856612-C-A							**
7757237-C-A	7889196-C-A							**
7923665-C-A	8055624-C-A							**
7947900-A-G	8079859-A-G							**
8030026-C-T	8161985-C-T							**
8074010-G-A	8205969-G-A							**
8100683-C-A	8232642-C-A							**
8282385-A-G	8414344-A-G							**
8293815-G-A	8425774-G-A							**
8293846-T-TA	8425805-T-TA						8×A	**
8379400-C-T	8511359-C-T							**
8379402-G-T	8511361-G-T							**
8730943-C-A	8862902-C-A						7×AAT	**
8736929-A-C	8868888-A-C							**
8776577-G-C	8908536-G-C							**
8807124-C-A	8939083-C-A							**
8902032-C-A	9033991-C-A							**
8988244-T-C	9150635-T-C							**
9034537-C-A	9196928-C-A							**
9075301-T-G	9237692-T-G							**
9076280-T-C	9238671-T-C							**
9231563-T-A	9393954-T-A							**
9231569-T-A	9393960-T-A							**
9442177-C-A	9604568-C-A							**
9442354-T-G	9604745-T-G							**
9539235-C-T	9701626-C-T			IR3_Prx				**
9674712-C-A	9837103-C-A			IR3_Prx				**
9732926-C-A	9895317-C-A			IR3_Prx				**
9820628-C-A	9983019-C-A							**
9847437-C-A	10009828-C-A							**
9927338-G-C	10089729-G-C							**
9942861-C-T	10105252-C-T							**
9945017-C-A	10107408-C-A							**
9958941-C-A	10121332-C-A							**
9964258-T-A	10126649-T-A							**
9965158-G-T	10127549-G-T							**
9974376-C-A	10136767-C-A							**
9977496-A-C	10139887-A-C							**
	10652431-C-G							**
	10654960-C-A							**
	10661585-A-C							**
	10666455-T-C							**
	10666489-A-T							**
	10668506-G-A							**
	10677973-G-T							**
	10678062-G-GATTCCATTCC							**
	10683206-G-T							**
	10745681-C-A							**
	10754071-A-C							**
	10759677-C-A							**
	10759686-G-T							**
	10767710-G-C		FT430333					**
	10767718-T-C							**
	10770485-C-T							**
	10777571-G-T							**
	10784157-G-T							**
	10786776-A-C							**
	10790587-A-C							**
	10794553-G-T							**
	10797681-C-T							**
	10797684-C-G							**
	10797994-C-G							**
	10797995-CATA-C							**
	10798000-CAA-C							**
	10798039-T-C							**
	10798042-C-T		FT108563					**
	10798521-C-A							**
	10800547-TTCTAC-T							**
	10800569-A-T							**
	10806976-A-G							**
	10807932-A-G							**
	10808591-C-A							**
	10808602-A-T							**
	10808615-C-A							**
	10808617-A-G							**
	10816702-C-A							**
	10826498-C-A							**
	10826602-T-G							**
	10829030-C-T							**
	10832872-C-G							**
	10843722-A-T							**
	10848700-T-C							**
	10857047-T-A							**
	10857108-CA-C							**
	10866699-T-C							**
	10868376-A-C							**
	10870651-C-G							**
	10875847-A-C							**
	10880438-A-G							**
	10882030-C-CCCTAA							**
	10889523-A-T							**
	10895803-TTCCGTTCCTCTC-T							**
	10924285-T-A							**
	10933609-C-A							**
	10934936-T-G							**
	10940353-C-A							**
	10940367-A-T							**
	10940370-C-T							**
	10940399-T-C							**
	10940542-A-T							**
	10943528-C-G							**
	10943938-T-A							**
	10944291-A-C							**
	10944714-G-C							**
	10944716-T-C							**
	10944717-G-C							**
	10947318-C-T							**
	10947319-A-G							**
	10947320-C-G							**
	10947322-CCACCC-T							**
	10954130-A-C							**
	10954140-G-C							**
	10956828-A-T							**
	10959546-C-A							**
	10969349-G-T							**
	10972443-A-C							**
	10974257-G-C							**
	10974262-G-C							**
	10975168-C-A							**
	10975299-T-C							**
	10975505-T-C							**
	10981121-A-G							**
	10981758-C-A							**
	10986700-C-A							**
	10987021-G-T							**
	10990675-C-A							**
	10992255-C-G							**
	10992267-A-C							**
	10992280-C-A							**
	10992283-C-G							**
	10993932-C-A							**
	10994002-C-G							**
	10995311-T-C							**
	10997516-C-A							**
	11001930-T-A							**
	11001937-C-T							**
	11001942-ATATTCGCCTCTATTTCACTCCACTC-A							**
	11001991-T-C							**
	11004671-G-T							**
	11008298-G-A		FT393507					**
	11015800-T-C							**
	11015805-G-A							**
	11015806-G-A							**
	11021239-G-C							**
	11022483-C-A							**
	11022645-C-A							**
	11028269-A-C							**
	11030690-T-A							**
	11030721-C-G							**
	11030739-C-T		FT440186					**
	11030753-A-C							**
	11031256-C-A							**
13234551-A-G	11078875-A-G							**
13236703-C-T	11081027-C-T							**
13256172-C-A	11100496-C-A							**
13461603-C-A	11305927-C-A							**
13494007-C-A	11338331-C-A							**
13558297-C-A	11402621-C-A							**
13565456-T-C	11409780-T-C							**
13578655-C-A	11422979-C-A							**
13597346-G-T	11441670-G-T							**
13734464-A-C	11578788-A-C							**
	11646843-G-T		FGC80217					**
	11647757-A-C							**
	11647807-A-G							**
	11650006-G-A							**
	11653603-A-G							**
	11663262-G-T							**
	11674587-T-G							**
13846943-T-A	11726237-T-A							**
13855649-A-G	11734943-A-G							**
13857016-C-A	11736310-C-A		FT224069					**
13859717-A-G	11739011-A-G							**
13885780-C-A	11765074-C-A							**
13920871-C-A	11800165-C-A							**
13927432-C-G	11806726-C-G							**
13928136-C-A	11807430-C-A							**
13928145-A-G	11807439-A-G							**
13932965-C-A	11812259-C-A							**
13958800-C-A	11838094-C-A							**
13974134-G-T	11853428-G-T							**
13981823-T-C	11861117-T-C							**
14011463-C-T	11890757-C-T							**
14073398-G-A	11952692-G-A							**
14100311-C-A	11979605-C-A							**
14107084-C-A	11986378-C-A							**
14159785-G-T	12039079-G-T							**
14176365-G-C	12055659-G-C							**
14178023-C-A	12057317-C-A							**
14247519-C-A	12126813-C-A							**
14283905-C-A	12163199-C-A							**
14299901-C-A	12179195-C-A							**
14324536-C-A	12203830-C-A							**
14331157-GC-T	12210451-GC-T							**
14380089-A-T	12259385-A-T							**
14387757-C-A	12267053-C-A		FT384698					**
14405824-C-A	12285121-C-A							**
14431386-T-G	12310659-T-G							**
14432137-C-A	12311410-C-A							**
14450426-C-A	12329699-C-A							**
14461165-AGGTTT-A	12340438-AGGTTT-A							**
14464186-G-T	12343459-G-T							**
14470285-C-A	12349554-C-A							**
14472852-C-A	12352121-C-A							**
14472860-C-A	12352129-C-A							**
14485710-G-T	12364979-G-T							**
14485915-C-T	12365184-C-T							**
14485924-T-C	12365193-T-C							**
14485925-G-A	12365194-G-A							**
14485928-C-T	12365197-C-T							**
14485935-T-A	12365204-T-A							**
14501988-C-A	12390193-C-A							**
14515131-A-G	12403336-A-G							**
14515661-C-A	12403862-C-A							**
14539431-C-G	12427632-C-G							**
14579405-C-A	12467605-C-A							**
14581072-C-A	12469272-C-A							**
14598806-C-A	12487006-C-A							**
14610602-C-A	12498804-C-A							**
14685860-C-A	12573926-C-A							**
14703483-C-A	12591549-C-A							**
14743500-C-A	12631569-C-A							**
14815398-C-A	12703469-C-A							**
14981776-T-A	12869852-T-A							**
14986108-C-A	12874176-C-A							**
15060603-C-A	12948695-C-A							**
15176445-C-A	13064531-C-A							**
15193549-C-A	13081635-C-A							**
15218834-G-T	13106920-G-T							**
15251917-C-A	13140003-C-A							**
15280877-T-G	13168976-T-G							**
15305755-G-T	13193854-G-T							**
15305763-T-G	13193862-T-G							**
15305799-T-G	13193898-T-G							**
15363930-G-C	13252050-G-C							**
15363931-G-T	13252051-G-T							**
15363956-A-G	13252076-A-G							**
15365327-C-A	13253447-C-A							**
15366010-C-A	13254130-C-A							**
15374516-C-A	13262636-C-A							**
15394817-G-T	13282937-G-T							**
15396781-C-A	13284901-C-A							**
15397786-TA-T	13285906-TA-T							**
15438974-G-A	13327094-G-A							**
15477290-TCAAAAA-T	13365410-TCAAAAA-T							**
15605596-C-A	13493716-C-A							**
15618962-G-A	13507082-G-A							**
15686850-C-T	13574970-C-T							**
15701007-C-A	13589127-C-A							**
15743117-G-C	13631237-G-C							**
15792962-C-A	13681082-C-A							**
15843008-T-C	13731128-T-C							**
15870671-C-A	13758791-C-A							**
15873489-C-A	13761609-C-A							**
15893831-G-T	13781951-G-T							**
15904041-T-C	13792161-T-C							**
15912135-C-G	13800255-C-G							**
15915113-G-C	13803233-G-C							**
15923887-C-A	13812007-C-A							**
15928688-G-A	13816808-G-A		FGC81704					**
16018261-C-A	13906381-C-A							**
16052153-T-G	13940273-T-G							**
16063410-C-A	13951530-C-A							**
16084319-T-G	13972439-T-G							**
16089779-C-A	13977899-C-A							**
16228030-T-A	14116150-T-A							**
16240835-C-A	14128955-C-A							**
16279214-G-T	14167334-G-T							**
16344442-C-T	14232562-C-T							**
16412420-C-A	14300540-C-A							**
16424679-TG-T	14312799-TG-T							**
16437487-C-A	14325607-C-A							**
16437512-C-A	14325632-C-A							**
16467596-C-A	14355716-C-A							**
16515869-C-A	14403989-C-A							**
16550880-C-A	14439000-C-A							**
16575112-C-A	14463232-C-A							**
16590873-C-A	14478993-C-A						17×A	**
16648146-A-T	14536266-A-T							**
16648150-G-T	14536270-G-T							**
16702213-C-T	14590333-C-T							**
16705680-C-A	14593800-C-A							**
16706910-G-A	14595030-G-A							**
16729365-T-C	14617485-T-C							**
16842019-G-A	14730139-G-A							**
16842024-T-G	14730144-T-G							**
16886914-C-A	14775034-C-A							**
17013169-T-G	14901289-T-G							**
17033785-TA-T	14921905-TA-T							**
17100501-A-G	14988621-A-G							**
17130461-G-T	15018581-G-T							**
17136964-C-A	15025084-C-A							**
17251680-C-A	15139800-C-A							**
17371158-C-A	15259278-C-A		FT301614					**
17372328-T-G	15260448-T-G							**
17380744-C-A	15268864-C-A							**
17434126-C-A	15322246-C-A							**
17440819-C-A	15328939-C-A							**
17502713-C-A	15390833-C-A							**
17502897-T-C	15391017-T-C							**
17545041-T-C	15433161-T-C							**
17568143-C-A	15456263-C-A							**
17597854-G-A	15485974-G-A							**
17616839-A-G	15504959-A-G							**
17633807-C-A	15521927-C-A							**
17703287-G-A	15591407-G-A							**
17716792-T-C	15604912-T-C							**
17728460-C-G	15616580-C-G							**
17728540-T-A	15616660-T-A							**
17782510-G-T	15670630-G-T							**
17825211-C-A	15713331-C-A							**
17946969-C-T	15835089-C-T							**
18053735-C-A	15941855-C-A							**
18058231-G-A	15946351-G-A							**
18088348-A-T	15976468-A-T							**
18128092-C-A	16016212-C-A							**
18186006-T-G	16074126-T-G							**
18186066-C-G	16074186-C-G							**
18186067-T-G	16074187-T-G							**
18186285-T-G	16074405-T-G							**
18186303-C-T	16074423-C-T							**
18191450-C-A	16079570-C-A							**
18191942-G-A	16080062-G-A							**
18201030-T-A	16089150-T-A							**
18226218-A-G	16114338-A-G							**
18271014-C-A	16159134-C-A							**
18271018-G-T	16159138-G-T						17×T	**
18321421-C-A	16209541-C-A			P6_Prx				**
18321445-A-AAT	16209565-A-AAT			P6_Prx				**
18321474-A-T	16209594-A-T			P6_Prx				**
18346592-T-C	16234712-T-C			P6_Prx				**
18463113-TA-T	16351233-TA-T			P6_Dst				**
18524431-C-T	16412551-C-T			P6_Dst				**
18630633-G-C	16518753-G-C							**
18659680-C-A	16547800-C-A							**
18754800-A-G	16642920-A-G							**
18825708-C-A	16713828-C-A							**
18831659-A-G	16719779-A-G							**
18850440-C-T	16738560-C-T							**
19109973-C-A	16998093-C-A							**
19189510-C-T	17077630-C-T							**
19189517-G-C	17077637-G-C							**
19189534-G-A	17077654-G-A							**
19189561-C-T	17077681-C-T							**
19189569-T-C	17077689-T-C							**
19189583-G-A	17077703-G-A							**
19189608-C-T	17077728-C-T							**
19189613-A-G	17077733-A-G							**
19202906-A-T	17091026-A-T							**
19202911-A-G	17091031-A-G							**
19202917-G-C	17091037-G-C							**
19202918-T-C	17091038-T-C							**
19202924-T-TC	17091044-T-TC							**
19202926-C-G	17091046-C-G							**
19216382-C-A	17104502-C-A							**
19310932-T-C	17199052-T-C							**
19331751-C-A	17219871-C-A							**
19410161-T-C	17298281-T-C							**
19469880-C-A	17358000-C-A		BY156872					**
19505492-A-G	17393612-A-G							**
19529227-C-T	17417347-C-T							**
19537838-G-C	17425958-G-C							**
19544431-C-A	17432551-C-A							**
19558378-C-A	17446498-C-A							**
19936148-G-T	17824268-G-T			P5_Prx				**
19936152-A-G	17824272-A-G			P5_Prx				**
20326039-A-AT	18164153-A-AT			P5_Dst				**
20438791-A-T	18276905-A-T			P5_Dst				**
20637691-C-T	18475805-C-T			P4_Prx				**
21068380-C-A	18906494-C-A							**
21068399-C-A	18906513-C-A							**
21177021-C-A	19015135-C-A							**
21211346-G-A	19049460-G-A							**
21237225-T-A	19075339-T-A							**
21241753-A-T	19079867-A-T							**
21276520-G-T	19114634-G-T							**
21325870-C-A	19163984-C-A							**
21394370-C-A	19232484-C-A							**
21438773-C-A	19276887-C-A							**
21448108-G-A	19286222-G-A							**
21462671-A-G	19300785-A-G							**
21555442-C-A	19393556-C-A							**
21558743-C-A	19396857-C-A							**
21584029-C-A	19422143-C-A							**
21589402-C-A	19427516-C-A							**
21617757-T-A	19455871-T-A							**
21714589-A-G	19552703-A-G							**
21748201-T-C	19586315-T-C							**
21890999-TGA-T	19729113-TGA-T							**
21959013-C-A	19797127-C-A							**
21963860-C-A	19801974-C-A							**
21972287-A-G	19810401-A-G							**
22023234-C-T	19861348-C-T		MF5512					**
22124331-C-A	19962445-C-A							**
22124445-C-A	19962559-C-A							**
22132513-C-A	19970627-C-A							**
22146346-A-G	19984460-A-G							**
22241624-CCATGAACCTGCCAGAAGGAAGAAA-C	20079738-CCATGAACCTGCCAGAAGGAAGAAA-C			DYZ19				**
22768177-G-C	20606291-G-C							**
22782017-C-A	20620131-C-A							**
22833813-C-A	20671927-C-A							**
22868912-C-A	20707026-C-A							**
22868979-C-A	20707093-C-A							**
22882117-T-A	20720231-T-A							**
22914570-T-G	20752684-T-G							**
22980718-C-G	20818832-C-G							**
22988365-C-A	20826479-C-A							**
23007144-G-T	20845258-G-T							**
23029779-T-C	20867893-T-C							**
23036490-C-A	20874604-C-A							**
23039361-C-A	20877475-C-A							**
23055256-G-T	20893370-G-T							**
23055338-T-C	20893452-T-C							**
23091581-C-A	20929695-C-A							**
23186181-C-A	21024295-C-A							**
23433600-C-A	21271714-C-A							**
23438906-G-A	21277020-G-A							**
23555929-C-T	21394043-C-T							**
23623408-C-G	21461522-C-G							**
23790357-C-A	21628471-C-A							**
23818085-G-T	21656199-G-T							**
23953059-G-T	21806912-G-T							**
24016623-A-C	21870476-A-C							**
24016754-C-T	21870607-C-T							**
24223203-C-T	22077056-C-T			P3_b1				**
24244628-G-T	22098481-G-T			P3_b1				**
24274002-A-AG	22127855-A-AG			P3_b1				**
24381399-AAAAT-A	22235252-AAAAT-A						4×AAAT	**
24408321-C-A	22262174-C-A							**
24884190-A-T	22738043-A-T			g1				**
24884191-G-GT	22738044-G-GT			g1				**
24904722-A-T	22758575-A-T			g1				**
25953993-C-A	23807846-C-A		FGC80343	P1_Y1				**
26018398-T-C	23872251-T-C			P1_Y1				**
26059255-A-T	23913108-A-T			P1_Y1				**
26059305-A-T	23913158-A-T			P1_Y1				**
26100882-G-T	23954735-G-T			P1_Y1				**
26148362-G-A	24002215-G-A			P1_Y1				**
26170653-C-G	24024506-C-G			P1_Y1				**
26206369-G-T	24060222-G-T			P1_Y1				**
26328594-C-T	24182447-C-T			P1_Y1				**
26328647-A-C	24182500-A-C			P1_Y1				**
26415731-C-T	24269584-C-T			P1_Y1				**
26415740-C-T	24269593-C-T			P1_Y1				**
26415742-A-T	24269595-A-T			P1_Y1				**
26415748-A-T	24269601-A-T			P1_Y1				**
27585942-A-T	25439795-A-T			P1_Y2				**
27856444-G-T	25710297-G-T			P1_Y2				**
27987732-G-A	25841585-G-A			P1_Y2				**
28229316-T-A	26083169-T-A			P1_b4				**
28462246-T-G	26316099-T-G							**
28463958-C-A	26317811-C-A							**
28465116-T-A	26318969-T-A							**
28465827-T-G	26319680-T-G							**
28484874-C-CA	26338727-C-CA							**
28511032-C-A	26364885-C-A							**
28517407-T-A	26371260-T-A							**
28530668-T-C	26384521-T-C							**
28555026-C-A	26408879-C-A							**
28561810-G-T	26415663-G-T							**
28609169-G-T	26463022-G-T							**
28609178-G-T	26463031-G-T							**
28612208-T-C	26466061-T-C							**
28624603-C-A	26478456-C-A							**
28656709-A-C	26510562-A-C							**
28656791-A-C	26510644-A-C							**
28657523-C-A	26511376-C-A							**
28700884-T-C	26554737-T-C							**
28777691-C-A	26631544-C-A							**
	56838547-C-A							**
	56839090-G-T							**
	56843282-A-T							**
	56846256-C-A							**
	56846856-G-T							**
	56850319-T-C							**
	56850325-C-T							**
	56850446-A-G							**
	56850447-G-C							**
	56851465-G-T							**
	56876137-A-ACCCGT							**
	56884296-T-G							**
	35838-C-A							**
8842966-G-A	8974925-G-A							***
4244818-C-A	4376777-C-A							***
2840099-C-A	2972058-C-A						20×A	***
2855296-A-T	2987255-A-T							***
3609882-C-A	3741841-C-A							***
4049988-G-T	4181947-G-T							***
4050010-ATAATT-A	4181969-ATAATT-A							***
5828984-C-A	5960943-C-A							***
7304602-C-A	7436561-C-A							***
7311410-A-C	7443369-A-C							***
7704897-T-A	7836856-T-A							***
8160290-C-A	8292249-C-A							***
8217792-C-A	8349751-C-A							***
8281779-CAA-C,CA	8413738-CAA-C,CA						15×A	***
8470536-T-A	8602495-T-A							***
8776503-C-T	8908462-C-T							***
8835351-CT-C	8967310-CT-C						8×T	***
8974951-T-C	9137342-T-C							***
9022244-CTTT-C	9184635-CTTT-C						14×T	***
9073972-C-A	9236363-C-A							***
9702932-G-A	9865323-G-A			IR3_Prx				***
9702947-G-A	9865338-G-A			IR3_Prx				***
	10776520-TCCATTC-T,TCCATTG							***
	10824150-T-G							***
	10861136-C-A							***
	10889676-G-T							***
	10971117-G-A,T							***
	10971948-A-G							***
13489001-C-A	11333325-C-A							***
13642460-C-A	11486784-C-A							***
13692561-C-A	11536885-C-A							***
	11666460-A-G							***
14522295-C-A	12410496-C-A							***
14526995-C-A	12415196-C-A							***
14717597-G-T	12605665-G-T							***
14766829-C-A	12654898-C-A							***
14821877-CAA-C	12709944-CAA-C						11×A	***
14925791-C-A	12813856-C-A							***
15107043-C-A	12995130-C-A							***
15369005-C-A	13257125-C-A							***
15412945-C-A	13301065-C-A							***
18738693-C-A	16626813-C-A							***
19111060-T-C	16999180-T-C							***
19202929-A-T	17091049-A-T							***
19415626-T-C	17303746-T-C							***
21651786-C-G	19489900-C-G							***
21797224-CTT-C	19635338-CTT-C						11×T	***
21905373-T-C	19743487-T-C							***
21969713-C-A	19807827-C-A							***
23818124-A-T	21656238-A-T							***
	21754327-T-C							***
23952841-C-A	21806694-C-A							***
24406841-A-G	22260694-A-G							***
24459215-C-A	22313068-C-A							***
	56837974-A-G							***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit	POSITION-REF-ALT (hg19)	POSITION-REF-ALT (hg38)	Note
Manual	9147218-A-G	9309609-A-G	12G
Manual	9147259-C-T	9309650-C-T	28T 2C