Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > FGC3216 > FGC3197 > FGC3198

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFB38
709663-A
BigY2
709663
Manual
Edits
20030050-G-T 17918170-G-T P5_Prx *A*
25933641-C-G 23787494-C-G P1_Y1 *A*
22473384-C-G 20311498-C-G BY21254 DYZ19 +
21142444-G-C 18980558-G-C BY130660 YY++
22293785-G-A 20131899-G-A BY155255 DYZ19 ++
22473381-A-G 20311495-A-G BY222905 DYZ19 +
22473385-T-G 20311499-T-G FT459438 DYZ19 +
23074212-C-A 20912326-C-A BY142807 YY++
7177189-A-G 7309148-A-G YY**
7220727-G-A 7352686-G-A YY**
7073423-A-G 7205382-A-G YY**
7190277-A-G 7322236-A-G FGC1579 F922 YY**
22421299-A-G 20259413-A-G DYZ19 *
7203486-CTG-C 7335445-CTG-C **
22473443-G-A 20311557-G-A FT459455 DYZ19 *
22504503-C-A 20342617-C-A DYZ19 *
20931853-A-ATGTG 18769967-A-ATGTG P4_Dst 18×TG*
22473460-T-G 20311574-T-G DYZ19 *
7053358-A-AAAAG,AAAAGAAAG 7185317-A-AAAAG,AAAAGAAAG 17×AAAG*
8747696-T-TGA,TGAGA 8879655-T-TGA,TGAGA 18×GA*
22473415-G-C 20311529-G-C DYZ19 ***
20778781-TTG-T,TTGTGTG 18616895-TTG-T,TTGTGTG P4_Prx 18×TG*
13452145-CCCCC-ACCCA 11296469-CCCCC-ACCCA *
13866450-GAACTGAAT-AAACGGAAC 11745744-GAACTGAAT-AAACGGAAC DYZ17 *
13448613-TTGCTCCA-GTGTTCCG 11292937-TTGCTCCA-GTGTTCCG *
13449095-TTCCACTCCACTCCAC-CTCCACTCCACTCCTT 11293419-TTCCACTCCACTCCAC-CTCCACTCCACTCCTT *
13449514-C-T,TTCCAT 11293838-C-T,TTCCAT *
13449811-TCGAT-CCGAC,TCGAC 11294135-TCGAT-CCGAC,TCGAC *
13450413-CCATTCCATTCCATTCTATTCCATTCCATTCCATTC-G 11294737-CCATTCCATTCCATTCTATTCCATTCCATTCCATTC-G *
13450521-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA,CTCCATCC 11294845-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA,CTCCATCC *
13450590-GCTCCATTCCATTCCATTCCATTCC-ACTCCATTCCATTCCATTCT,GCTCCATTCCATTCCATTCC 11294914-GCTCCATTCCATTCCATTCCATTCC-ACTCCATTCCATTCCATTCT,GCTCCATTCCATTCCATTCC *
13450721-TATTCCG-AATTGCA 11295045-TATTCCG-AATTGCA *
13451185-CTCCTTT-CTCCATTC,TTC 11295509-CTCCTTT-CTCCATTC,TTC *
13451485-ATTCTG-ATTCCA,GTTCCA 11295809-ATTCTG-ATTCCA,GTTCCA *
13489557-TTG-GTT 11333881-TTG-GTT *
13489619-ACCCCCACCACCACCCA-TCACTCCACACACAAACC 11333943-ACCCCCACCACCACCCA-TCACTCCACACACAAACC *
13869648-TGGAG-CGGAT 11748942-TGGAG-CGGAT DYZ17 *
13869679-TGA-CAT,TAT 11748973-TGA-CAT,TAT DYZ17 *
15305890-G-AT,ATAG 13193992-G-AT,ATAG *
21971660-G-GA,GAA 19809774-G-GA,GAA 11×A*
27699959-TAT-CAC,CACATAT 25553812-TAT-CAC,CACATAT P1_Y2 *
56826418-TATTCC-CATTCCATTCG,TATTCCATTCA *
56826706-CAATTC-ATATTC,CTATTA *
56827687-TGATT-CGATT,TGATC *
56829589-TCCAT-CACAC,TACAC *
56831681-G-C,CATTCC *
56831758-ATCATG-ATCACT,GTCACT *
56831874-ATTGCATTCCA-ATTACATCCT,TTTACATCCA *
56831988-CTCTG-CTCTC,GTCTC *
56832303-C-T,TCCATT *
56832495-CGCACTC-TG,TGCACTC *
56833944-CCT-ACT,CCA *
56836440-GT-AC,AT *
56837147-TC-GA,GC *
6402333-CGTATT-TTTATA 6534292-CGTATT-TTTATA *
19949035-ATT-GTC 17837155-ATT-GTC P5_Prx *
22360398-CGTCCAGCG-TCTAGCA,TGTCCAGCG 20198512-CGTCCAGCG-TCTAGCA,TGTCCAGCG DYZ19 *
22367547-GCAT-AGAG,GCAG 20205661-GCAT-AGAG,GCAG DYZ19 *
22421241-T-C 20259355-T-C DYZ19 *
22421267-GC-AG 20259381-GC-AG DYZ19 *
22473342-GATTG-TATTT 20311456-GATTG-TATTT DYZ19 *
22473381-ACACT-ACAGT,GCAGG 20311495-ACACT-ACAGT,GCAGG DYZ19 *
22473453-TTG-CTA 20311567-TTG-CTA DYZ19 *
22473468-TTTCTTCCTTC-ATTGTTGCTTT 20311582-TTTCTTCCTTC-ATTGTTGCTTT DYZ19 *
24165234-A-T 22019087-A-T P3_b1 *
25273788-ATT-A,AT 23127641-ATT-A,AT P2_r1 21×T*
27809465-T-C 25663318-T-C P1_Y2 **
22504570-C-A 20342684-C-A DYZ19 **
22492913-C-G 20331027-C-G DYZ19 **
22492917-C-A 20331031-C-A DYZ19 **
22499133-T-A 20337247-T-A DYZ19 **
20230710-T-G 18068824-T-G P5_Dst **
27809437-C-A 25663290-C-A P1_Y2 **
27773675-C-CT 25627528-C-CT P1_Y2 9×T**
25452458-G-GT 23306311-G-GT P2_r2 13×T**
22309326-G-A 20147440-G-A DYZ19 **
19025638-T-G 16913758-T-G FGC77954 **
22308503-C-A 20146617-C-A DYZ19 **
22491804-T-G 20329918-T-G DYZ19 **
58916150-CTCC-TTCA 56674718-GGAG-TGAA **
22481930-G-T 20320044-G-T DYZ19 **
25456551-GATAT-G 23310404-GATAT-G P2_r2 20×AT**
22329951-T-G 20168065-T-G DYZ19 **
22329960-A-T 20168074-A-T DYZ19 **
58914170-C-T 56676701-G-A **
13461283-G-C 11305607-G-C **
28160822-CT-C 26014675-CT-C P1_b4 22×T**
27809442-T-C 25663295-T-C P1_Y2 **
27881475-C-CT 25735328-C-CT P1_Y2 12×T**
27809490-CAGAC-TAGAT 25663343-CAGAC-TAGAT P1_Y2 **
22434855-CA-AC 20272969-CA-AC DYZ19 **
58981637-TCC-CCCCTCCA 56835490-TCC-CCCCTCCA **
58910388-C-G 56680483-G-C **
6204749-A-G 6336708-A-G IR3_Dst **
27072034-CAA-C 24925887-CAA-C P1_r4 14×A**
23121025-G-A 20959139-G-A **
59026236-TACC-CACT 56880089-TACC-CACT **
2977208-C-A 3109167-C-A ****
3294459-C-A 3426418-C-A ****
3478880-C-A 3610839-C-A ****
4463073-G-A 4595032-G-A **
4722399-G-T 4854358-G-T **
4896649-CAAA-C 5028608-CAAA-C 16×A**
5135386-A-T 5267345-A-T ****
5572338-C-A 5704297-C-A ****
5739052-G-T 5871011-G-T **
7081303-C-A 7213262-C-A *****
9125485-C-A ****
9442189-G-T 9604580-G-T ****
10003551-G-T 10165942-G-T *****
10666988-C-G **
10667021-T-C **
10667581-C-A ****
10669682-T-A **
10686921-T-C **
10693079-C-A **
10746670-T-C **
10746680-T-A **
10749881-C-A ****
10756591-TTC-T ****
10759320-C-G **
10781340-A-T **
10786163-C-A *****
10801503-A-C **
10801504-C-A **
10818736-T-A **
10818760-C-T **
10827080-A-T **
10827084-C-A **
10827305-C-A ****
10838148-C-A ****
10883597-A-C **
10883599-T-C **
10912210-A-G **
10919878-C-A ****
10922286-T-A **
10922290-C-CTATA **
10922325-C-A **
10922342-T-G **
10977132-C-A ****
10982389-T-C *****
10983095-C-A ****
11004062-C-A *****
11010759-A-T ****
11010770-T-C **
11020884-C-A ****
11031569-ACCATTCCATTCCATTCCATTCCATTCCATTCCATT-A **
13505011-C-A 11349335-C-A *****
13507803-C-A 11352127-C-A **
13744039-A-G 11588363-A-G DYZ17 **
11650755-C-A DYZ17 *****
13912925-G-T 11792219-G-T ****
13943605-G-T 11822899-G-T ****
13952337-G-T 11831631-G-T ****
14075394-C-A 11954688-C-A ****
14267130-T-C 12146424-T-C *****
14674881-T-C 12562947-T-C **
14695404-C-A 12583470-C-A ****
14720132-G-T 12608200-G-T **
15160621-C-A 13048707-C-A *****
15185948-G-T 13074034-G-T ****
15641582-A-T 13529702-A-T ****
16055924-C-A 13944044-C-A ****
16424921-C-A 14313041-C-A *****
16426448-C-T 14314568-C-T FTB62460 ****
16574577-G-T 14462697-G-T ****
17378333-G-T 15266453-G-T ****
18902576-C-A 16790696-C-A ****
19412924-C-A 17301044-C-A *****
19544401-A-C 17432521-A-C **
19809869-T-G 17697989-T-G BY49474 P5_Prx **
21107861-C-A 18945975-C-A ****
21581623-C-A 19419737-C-A **
22473427-A-T 20311541-A-T DYZ19 **
22473429-T-C 20311543-T-C DYZ19 **
23062626-A-G 20900740-A-G *****
23123148-C-A 20961262-C-A *****
23338938-C-A 21177052-C-A FTB73070 ****
23569476-C-A 21407590-C-A ****
28550504-G-T 26404357-G-T **
28684349-G-T 26538202-G-T **
28798603-C-A 26652456-C-A *****
56838379-G-T ****
56844547-C-A **
10565-G-T **
17713850-C-A 15601970-C-A 23×T**
56839768-T-A **
13716577-G-A 11560901-G-A DYZ17 **
20107274-G-T 17995394-G-T P5_Dst **
13698751-G-T 11543075-G-T DYZ17 **
27894880-GTA-G 25748733-GTA-G P1_Y2 **
10678595-ATCCAC-TTCTAT **
10678605-CC-TT **
13745515-A-T 11589839-A-T DYZ17 **
18515844-G-T 16403964-G-T P6_Dst **
19631269-A-T 17519389-A-T P5_Prx **
19680083-G-T 17568203-G-T P5_Prx **
20220698-C-A 18058812-C-A P5_Dst **
20387667-G-T 18225781-G-T P5_Dst **
20474703-G-T 18312817-G-T P5_Dst **
20529001-G-T 18367115-G-T P5_Dst **
20748768-T-A 18586882-T-A P4_Prx **
20855621-T-A 18693735-T-A P4_Dst **
21771569-G-T **
24631297-G-T 22485150-G-T P3_t2 **
25868973-G-T 23722826-G-T P1_Y1 **
26376230-C-A 24230083-C-A P1_Y1 **
27853937-C-T 25707790-C-T P1_Y2 **
28096523-G-T 25950376-G-T P1_Y2 **
20859789-GA-G 18697903-GA-G P4_Dst 13×A**
10884837-CTTTCCATTCC-T **
19209891-A-G 17098011-A-G **
6114527-A-T 6246486-A-T **
6114544-G-T 6246503-G-T **
7536050-AAAAAAAAAAAAAAAAAAAAAGC-TTAAAATTAAAT 7668009-AAAAAAAAAAAAAAAAAAAAAGC-TTAAAATTAAAT **
9056857-AGAT-GGAC **
9056873-CTG-TCTCTC **
10663871-CCA-TCC **
10678039-CTCCAC-TTCAAT **
10747110-CACG-GACA **
10770733-C-T **
10799447-CCA-TCG **
10851011-ATTGCAC-TTTCCAA **
10877829-AA-TC **
10895807-GTTCCTC-ATTCTAT **
10911684-CATC-AATA **
10911722-ATGT-CTGA **
10911770-CGAGA-AGAGG **
10987289-AGCT-GGCA **
11010767-TCATTCCGTTC-CCACTCCATTG **
11030257-GCTGTTGT-CCTGGACG **
11031514-A-T **
13281897-C-A 11126221-C-A **
13336653-G-T 11180977-G-T **
13708216-G-T 11552540-G-T DYZ17 **
13708757-C-A 11553081-C-A DYZ17 **
13708805-A-T 11553129-A-T DYZ17 **
13727560-G-T 11571884-G-T DYZ17 **
11647708-NN-AT DYZ17 **
14718864-T-C 12606932-T-C **
17520774-G-T 15408894-G-T **
23110567-G-T 20948681-G-T **
23747234-TAGTC-ATTA 21585348-TAGTC-ATTA **
28582762-G-T 26436615-G-T **
56680537-T-A **
56702723-A-T **
6403154-GTA-AT 6535113-GTA-AT **
9221706-TATATATAT-C 9384097-TATATATAT-C **
9552316-C-A 9714707-C-A IR3_Prx **
18013022-TTTTC-T 15901142-TTTTC-T P7_Dst **
18283210-C-A 16171330-C-A P6_Prx **
18335262-C-A 16223382-C-A P6_Prx **
19209881-T-C 17098001-T-C **
19209886-T-A 17098006-T-A **
19704231-TGG-T 17592351-TGG-T P5_Prx 13×G**
20084667-C-A 17972787-C-A P5_Dst **
20233143-A-T 18071257-A-T P5_Dst **
20251651-TCCAGGGTTAC-T 18089765-TCCAGGGTTAC-T P5_Dst **
20364426-C-A 18202540-C-A P5_Dst **
20432033-C-A 18270147-C-A P5_Dst **
22322286-A-G 20160400-A-G DYZ19 **
22322961-A-T 20161075-A-T DYZ19 **
22352486-AGAGTTTTTTCCTTT-TGAGTTTTTTTCCTTC 20190600-AGAGTTTTTTCCTTT-TGAGTTTTTTTCCTTC DYZ19 **
22481196-T-C 20319310-T-C DYZ19 **
22481198-A-T 20319312-A-T DYZ19 **
22481956-TTGTG-ATGTC 20320070-TTGTG-ATGTC DYZ19 **
22501610-T-A 20339724-T-A DYZ19 **
22501611-G-T 20339725-G-T DYZ19 **
22501662-C-T 20339776-C-T DYZ19 **
22501690-C-G 20339804-C-G DYZ19 **
22504544-CCA-ACT 20342658-CCA-ACT DYZ19 **
22504551-CTTTAGTGTTAA-GGTGTGTGATAC 20342665-CTTTAGTGTTAA-GGTGTGTGATAC DYZ19 **
21777804-GA-G **
24132046-G-A 21985899-G-A P3_b1 **
24144837-A-T 21998690-A-T P3_b1 **
24558958-ACCCCTT-A 22412811-ACCCCTT-A P3_t2 **
24638498-C-A 22492351-C-A P3_t2 **
24639494-T-A 22493347-T-A P3_t2 **
24658501-C-A 22512354-C-A P3_b2 **
24670251-A-G 22524104-A-G P3_b2 **
24716385-G-T 22570238-G-T P3_b2 **
24864145-G-T 22717998-G-T IR1_R **
25004871-G-T 22858724-G-T g1 **
25224804-C-A 23078657-C-A P2_r1 **
25230840-A-G 23084693-A-G P2_r1 **
25422190-CTT-C 23276043-CTT-C P2_r2 16×T**
25631770-A-T 23485623-A-T P1_b3 **
25655310-G-T 23509163-G-T P1_b3 **
25658880-G-T 23512733-G-T P1_b3 **
25658918-C-A 23512771-C-A P1_b3 **
25878440-T-A 23732293-T-A P1_Y1 **
26730201-A-T 24584054-A-T P1_g2 18×AAAG**
26994345-A-G 24848198-A-G P1_r4 **
27304482-G-T 25158335-G-T P1_g3 **
27348740-G-T 25202593-G-T P1_g3 **
27377330-G-T 25231183-G-T P1_g3 **
27428779-A-T 25282632-A-T P1_g3 **
27563934-C-A 25417787-C-A P1_Y2 **
27761289-G-T 25615142-G-T P1_Y2 **
27809502-TCCC-ATCT 25663355-TCCC-ATCT P1_Y2 **
27940913-GA-G 25794766-GA-G P1_Y2 **
28010971-GC-G 25864824-GC-G P1_Y2 **
28261883-TCAAA-T 26115736-TCAAA-T P1_b4 5×CAAA**
20796094-AAC-A 18634208-AAC-A P4_Prx 8×AC***
25142318-G-T 22996171-G-T g1 19×T***
25500842-C-CA 23354695-C-CA P2_r2 10×A***
22503111-G-C 20341225-G-C DYZ19 ***
20230760-C-A 18068874-C-A P5_Dst ***
25727946-G-GAT 23581799-G-GAT P1_b3 14×AT***
20230740-AAT-GAC 18068854-AAT-GAC P5_Dst ***
27033095-C-CT 24886948-C-CT P1_r4 17×T***
22335808-C-T 20173922-C-T DYZ19 ***
20881862-CA-C 18719976-CA-C P4_Dst 16×A***
27062987-TGTA-T 24916840-TGTA-T P1_r4 5×GTA***
20771714-GAA-G 18609828-GAA-G P4_Prx 25×A***
18439255-G-GT 16327375-G-GT P6_Dst 25×T***
14356890-CTTTT-C 12236185-CTTTT-C 17×T***
9372603-C-CT 9534994-C-CT 13×T***
20207102-C-CA 18045216-C-CA P5_Dst 10×A***
22501988-G-C 20340102-G-C DYZ19 ***
22352717-G-C 20190831-G-C DYZ19 ***
25247640-C-CA 23101493-C-CA P2_r1 15×A***
27793173-G-C 25647026-G-C P1_Y2 ***
22311536-A-G 20149650-A-G DYZ19 ***
22352624-G-T 20190738-G-T DYZ19 ***
25717179-C-CA 23571032-C-CA P1_b3 15×A***
9370162-C-T 9532553-C-T ***
22360196-CT-AG 20198310-CT-AG DYZ19 ***
22473391-G-T 20311505-G-T FT459442 DYZ19 ***
13481425-GGTGATC-CGAGATA 11325749-GGTGATC-CGAGATA ***
21023249-GT-G,GTT 18861363-GT-G,GTT P4_Dst 14×T***
22504309-T-A 20342423-T-A DYZ19 ***
27791108-G-T 25644961-G-T P1_Y2 ***
5200373-G-A 5332332-G-A ***
6010204-C-A 6142163-C-A ***
6759230-C-A 6891189-C-A ***
7042962-G-T 7174921-G-T ******
7098765-C-A 7230724-C-A ******
8785587-C-T 8917546-C-T ***
10023405-C-A 10185796-C-A ******
10023813-C-A 10186204-C-A ***
10678087-C-A ***
10880695-T-C ***
10954612-A-C ***
11030807-A-C,G ***
11031723-C-A ***
13454568-A-G 11298892-A-G ***
13468310-T-C 11312634-T-C ***
11677303-GA-G DYZ17 ***
13804320-G-T 11683614-G-T DYZ17 ***
14065911-CA-C 11945205-CA-C ******
15984499-C-A 13872619-C-A ***
16001436-G-T 13889556-G-T ******
16292054-C-A 14180174-C-A ******
17103887-G-T 14992007-G-T ******
17301276-G-T 15189396-G-T ***
17883677-C-A 15771797-C-A ***
18397900-GTA-G 16286020-GTA-G P6_Gap ******
18838704-TA-T 16726824-TA-T ***
19258424-C-A 17146544-C-A ******
19422948-TCTC-T 17311068-TCTC-T 5×CTC***
21397544-C-A 19235658-C-A ******
22164592-C-A 20002706-C-A ***
22300719-C-A 20138833-C-A DYZ19 ***
23352367-T-C 21190481-T-C ******
23803411-C-A 21641525-C-A ******
23876560-G-T 21714674-G-T ***
24422457-C-A 22276310-C-A ***
24475079-C-A 22328932-C-A ***
24517704-C-A 22371557-C-A ***
56763537-G-T ***
56763543-A-T ***
20872427-A-T 18710541-A-T P4_Dst ***
13256130-C-A 11100454-C-A ***
18463148-G-T 16351268-G-T P6_Dst ***
22722338-CT-C,CTT 20560452-CT-C,CTT 24×T***
15904149-CAA-C,CA 13792269-CAA-C,CA 20×A***
22311531-T-A 20149645-T-A DYZ19 ***
8854353-T-C 8986312-T-C ***
20479175-A-AT 18317289-A-AT P5_Dst 8×T***
19639332-C-A 17527452-C-A P5_Prx ***
20573243-G-T 18411357-G-T P5_Dst ***
24632587-G-T 22486440-G-T P3_t2 ***
25918151-G-T 23772004-G-T P1_Y1 ***
27782214-G-T 25636067-G-T P1_Y2 ***
28045739-C-A 25899592-C-A P1_Y2 ***
6308050-GCA-G 6440009-GCA-G IR3_Dst 9×CA***
13723432-G-C 11567756-G-C DYZ17 ***
9320681-C-T 9483072-C-T ***
19647566-C-A 17535686-C-A P5_Prx ***
20867012-G-T 18705126-G-T P4_Dst ***
20894638-A-T 18732752-A-T P4_Dst ***
21002338-C-T 18840452-C-T P4_Dst ***
20751042-GA-G 18589156-GA-G P4_Prx 13×A***
10807293-TTCAA-GTCAT ***
10845703-TTCCC-CTCCA ***
10911787-CC-A ***
10949134-A-ATTACT ***
10949148-TACA-ATCT ***
10949165-TTCT-CTCC ***
13253393-TCGG-CCAGTT 11097717-TCGG-CCAGTT ***
13323494-CAA-C,CAAA 11167818-CAA-C,CAAA 24×A***
13461897-AAACC-CAACT 11306221-AAACC-CAACT ***
13481313-AT-CA 11325637-AT-CA ***
13481403-TAGAAAAG-AAGGCAAC 11325727-TAGAAAAG-AAGGCAAC ***
13489069-AAGGCGCTT-TAGGCACTC 11333393-AAGGCGCTT-TAGGCACTC ***
13489695-CCGT-ACGG 11334019-CCGT-ACGG ***
13722069-GGAATA-G,GGAATG 11566393-GGAATA-G,GGAATG DYZ17 ***
13722084-C-A,GGAATA 11566408-C-A,GGAATA DYZ17 ***
13724402-C-A 11568726-C-A DYZ17 ***
17919855-GA-AA,G 15807975-GA-AA,G 25×A***
56826628-CATCCCGTTT-TGTCCCGTTC ***
56827478-GTTCCATTCG-ATTCCATTCA,GTTCCATTCA ***
56828824-CATTGCATTCAATTCCATTC-AATTCCATTCCATTCCATTT ***
56830481-ATCT-GTCC ***
56830529-CCATTGCATTCTGCTGAATTCCATTGCATTCC-TCATTGCATTCCATTGAATTCCATTGCATTCT ***
56831390-ATTC-TTTCCACTTCATTT ***
56831409-TGTTCCATTC-CGTTTCATTCCATTG,CTTTTCATTCCATTC ***
56834455-TTCCATTCCCTTCCATTA-CTCCATTCCATTCCCTTCCCTTC ***
56834897-CAGG-CAGC,TAGT ***
56834966-C-A ***
56835426-CT-CA,TT ***
56835708-CAT-TAC ***
56836683-TG-CA ***
56846825-GAGAA-GAGAT,TAGAT ***
56850715-GA-CG,GG ***
7490533-G-T 7622492-G-T IR1_L ***
9543845-T-A 9706236-T-A IR3_Prx ***
9545908-A-AC 9708299-A-AC IR3_Prx ***
9564790-G-T 9727181-G-T IR3_Prx ***
19829299-C-AT 17717419-C-AT P5_Prx 27×T***
19979864-CTTTT-C,CTTT 17867984-CTTTT-C,CTTT P5_Prx 28×T***
20084748-C-A 17972868-C-A P5_Dst ***
20098149-G-T 17986269-G-T P5_Dst ***
20108290-C-A 17996410-C-A P5_Dst ***
20142236-C-A 18030356-C-A P5_Dst ***
20211455-T-C 18049569-T-C P5_Dst ***
20346436-GTGTAGTAAAAGT-G 18184550-GTGTAGTAAAAGT-G P5_Dst ***
20506047-GCACT-TCACC 18344161-GCACT-TCACC P5_Dst ***
20858382-AT-A 18696496-AT-A P4_Dst ***
20883133-C-A 18721247-C-A P4_Dst ***
20884980-G-T 18723094-G-T P4_Dst ***
20897829-C-A 18735943-C-A P4_Dst ***
20909697-AT-A 18747811-AT-A P4_Dst ***
22296006-G-A 20134120-G-A DYZ19 ***
22311521-CCTC-ACTG 20149635-CCTC-ACTG DYZ19 ***
22360090-ACC-ACT,CCT 20198204-ACC-ACT,CCT DYZ19 ***
22492650-AT-CA 20330764-AT-CA DYZ19 ***
22494237-GTGTT-CTGTC 20332351-GTGTT-CTGTC DYZ19 ***
22494389-T-G 20332503-T-G DYZ19 ***
22499842-GATC-CTTT,GTTC 20337956-GATC-CTTT,GTTC DYZ19 ***
22500317-C-A 20338431-C-A DYZ19 ***
22504481-G-A 20342595-G-A DYZ19 ***
23678682-GT-G 21516796-GT-G 14×T***
24018449-C-A 21872302-C-A ***
24035213-CTCAAACATA-ACTCAAACATA,CTCAAACAT 21889066-CTCAAACATA-ACTCAAACATA,CTCAAACAT ***
24548125-C-A 22401978-C-A P3_t2 ***
24586008-G-T 22439861-G-T P3_t2 ***
24616369-G-T 22470222-G-T P3_t2 ***
24631744-GGGGT-G 22485597-GGGGT-G P3_t2 ***
24632278-G-T 22486131-G-T P3_t2 ***
24713450-T-A 22567303-T-A P3_b2 ***
24757525-G-T 22611378-G-T P3_b2 ***
25124690-C-A 22978543-C-A g1 ***
25185199-G-T 23039052-G-T g1 ***
25280367-CTTT-C,CT 23134220-CTTT-C,CT P2_r1 26×T***
25650092-G-T 23503945-G-T P1_b3 ***
25901082-C-A 23754935-C-A P1_Y1 ***
26946204-CTTA-ATT,CTT 24800057-CTTA-ATT,CTT P1_r3 ***
27125789-GA-G 24979642-GA-G P1_g3 8×A***
27193815-G-T 25047668-G-T P1_g3 ***
27198886-CAA-C 25052739-CAA-C P1_g3 11×A***
27207208-G-T 25061061-G-T P1_g3 ***
27361331-G-T 25215184-G-T P1_g3 ***
27381821-A-G 25235674-A-G P1_g3 ***
27541275-G-T 25395128-G-T P1_Y2 ***
27579077-C-CA 25432930-C-CA P1_Y2 16×A***
27709182-G-T 25563035-G-T P1_Y2 ***
27792631-A-T 25646484-A-T P1_Y2 ***
27805876-C-A 25659729-C-A P1_Y2 ***
27859756-C-A 25713609-C-A P1_Y2 ***
27936764-CA-C,CAA 25790617-CA-C,CAA P1_Y2 15×A***
28245703-C-A 26099556-C-A P1_b4 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual20007955-A-G17896075-A-G2A 1G
Manual6274770-G-A6406729-G-A1A