Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Names	Region	McDonald BED	combBED	STR	FB38 709663-A	BigY2 709663
20030050-G-T	17918170-G-T		P5_Prx				*	A*
25933641-C-G	23787494-C-G		P1_Y1				*	A*
22473384-C-G	20311498-C-G	BY21254	DYZ19					+
21142444-G-C	18980558-G-C	BY130660		Y	Y		+	+
22293785-G-A	20131899-G-A	BY155255	DYZ19				+	+
22473381-A-G	20311495-A-G	BY222905	DYZ19					+
22473385-T-G	20311499-T-G	FT459438	DYZ19					+
23074212-C-A	20912326-C-A	BY142807		Y	Y		+	+
7177189-A-G	7309148-A-G			Y	Y		*	*
7220727-G-A	7352686-G-A			Y	Y		*	*
7073423-A-G	7205382-A-G			Y	Y		*	*
7190277-A-G	7322236-A-G	FGC1579 F922		Y	Y		*	*
22421299-A-G	20259413-A-G		DYZ19				*
7203486-CTG-C	7335445-CTG-C						*	*
22473443-G-A	20311557-G-A	FT459455	DYZ19				*
22504503-C-A	20342617-C-A		DYZ19				*
20931853-A-ATGTG	18769967-A-ATGTG		P4_Dst			18×TG		*
22473460-T-G	20311574-T-G		DYZ19				*
7053358-A-AAAAG,AAAAGAAAG	7185317-A-AAAAG,AAAAGAAAG					17×AAAG	*
8747696-T-TGA,TGAGA	8879655-T-TGA,TGAGA					18×GA	*
22473415-G-C	20311529-G-C		DYZ19				*	**
20778781-TTG-T,TTGTGTG	18616895-TTG-T,TTGTGTG		P4_Prx			18×TG	*
13452145-CCCCC-ACCCA	11296469-CCCCC-ACCCA						*
13866450-GAACTGAAT-AAACGGAAC	11745744-GAACTGAAT-AAACGGAAC		DYZ17				*
13448613-TTGCTCCA-GTGTTCCG	11292937-TTGCTCCA-GTGTTCCG						*
13449095-TTCCACTCCACTCCAC-CTCCACTCCACTCCTT	11293419-TTCCACTCCACTCCAC-CTCCACTCCACTCCTT						*
13449514-C-T,TTCCAT	11293838-C-T,TTCCAT						*
13449811-TCGAT-CCGAC,TCGAC	11294135-TCGAT-CCGAC,TCGAC						*
13450413-CCATTCCATTCCATTCTATTCCATTCCATTCCATTC-G	11294737-CCATTCCATTCCATTCTATTCCATTCCATTCCATTC-G						*
13450521-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA,CTCCATCC	11294845-CTTCACTCCACTCCATCC-ATCCATCCCATTCCATCA,CTCCATCC						*
13450590-GCTCCATTCCATTCCATTCCATTCC-ACTCCATTCCATTCCATTCT,GCTCCATTCCATTCCATTCC	11294914-GCTCCATTCCATTCCATTCCATTCC-ACTCCATTCCATTCCATTCT,GCTCCATTCCATTCCATTCC						*
13450721-TATTCCG-AATTGCA	11295045-TATTCCG-AATTGCA						*
13451185-CTCCTTT-CTCCATTC,TTC	11295509-CTCCTTT-CTCCATTC,TTC						*
13451485-ATTCTG-ATTCCA,GTTCCA	11295809-ATTCTG-ATTCCA,GTTCCA						*
13489557-TTG-GTT	11333881-TTG-GTT						*
13489619-ACCCCCACCACCACCCA-TCACTCCACACACAAACC	11333943-ACCCCCACCACCACCCA-TCACTCCACACACAAACC						*
13869648-TGGAG-CGGAT	11748942-TGGAG-CGGAT		DYZ17				*
13869679-TGA-CAT,TAT	11748973-TGA-CAT,TAT		DYZ17				*
15305890-G-AT,ATAG	13193992-G-AT,ATAG						*
21971660-G-GA,GAA	19809774-G-GA,GAA					11×A	*
27699959-TAT-CAC,CACATAT	25553812-TAT-CAC,CACATAT		P1_Y2				*
	56826418-TATTCC-CATTCCATTCG,TATTCCATTCA						*
	56826706-CAATTC-ATATTC,CTATTA						*
	56827687-TGATT-CGATT,TGATC						*
	56829589-TCCAT-CACAC,TACAC						*
	56831681-G-C,CATTCC						*
	56831758-ATCATG-ATCACT,GTCACT						*
	56831874-ATTGCATTCCA-ATTACATCCT,TTTACATCCA						*
	56831988-CTCTG-CTCTC,GTCTC						*
	56832303-C-T,TCCATT						*
	56832495-CGCACTC-TG,TGCACTC						*
	56833944-CCT-ACT,CCA						*
	56836440-GT-AC,AT						*
	56837147-TC-GA,GC						*
6402333-CGTATT-TTTATA	6534292-CGTATT-TTTATA						*
19949035-ATT-GTC	17837155-ATT-GTC		P5_Prx				*
22360398-CGTCCAGCG-TCTAGCA,TGTCCAGCG	20198512-CGTCCAGCG-TCTAGCA,TGTCCAGCG		DYZ19				*
22367547-GCAT-AGAG,GCAG	20205661-GCAT-AGAG,GCAG		DYZ19				*
22421241-T-C	20259355-T-C		DYZ19				*
22421267-GC-AG	20259381-GC-AG		DYZ19				*
22473342-GATTG-TATTT	20311456-GATTG-TATTT		DYZ19				*
22473381-ACACT-ACAGT,GCAGG	20311495-ACACT-ACAGT,GCAGG		DYZ19				*
22473453-TTG-CTA	20311567-TTG-CTA		DYZ19				*
22473468-TTTCTTCCTTC-ATTGTTGCTTT	20311582-TTTCTTCCTTC-ATTGTTGCTTT		DYZ19				*
24165234-A-T	22019087-A-T		P3_b1				*
25273788-ATT-A,AT	23127641-ATT-A,AT		P2_r1			21×T	*
27809465-T-C	25663318-T-C		P1_Y2				**
22504570-C-A	20342684-C-A		DYZ19				**
22492913-C-G	20331027-C-G		DYZ19				**
22492917-C-A	20331031-C-A		DYZ19				**
22499133-T-A	20337247-T-A		DYZ19				**
20230710-T-G	18068824-T-G		P5_Dst				**
27809437-C-A	25663290-C-A		P1_Y2				**
27773675-C-CT	25627528-C-CT		P1_Y2			9×T	**
25452458-G-GT	23306311-G-GT		P2_r2			13×T	**
22309326-G-A	20147440-G-A		DYZ19				**
19025638-T-G	16913758-T-G	FGC77954					**
22308503-C-A	20146617-C-A		DYZ19				**
22491804-T-G	20329918-T-G		DYZ19				**
58916150-CTCC-TTCA	56674718-GGAG-TGAA						**
22481930-G-T	20320044-G-T		DYZ19				**
25456551-GATAT-G	23310404-GATAT-G		P2_r2			20×AT	**
22329951-T-G	20168065-T-G		DYZ19				**
22329960-A-T	20168074-A-T		DYZ19				**
58914170-C-T	56676701-G-A						**
13461283-G-C	11305607-G-C						**
28160822-CT-C	26014675-CT-C		P1_b4			22×T	**
27809442-T-C	25663295-T-C		P1_Y2				**
27881475-C-CT	25735328-C-CT		P1_Y2			12×T	**
27809490-CAGAC-TAGAT	25663343-CAGAC-TAGAT		P1_Y2				**
22434855-CA-AC	20272969-CA-AC		DYZ19				**
58981637-TCC-CCCCTCCA	56835490-TCC-CCCCTCCA						**
58910388-C-G	56680483-G-C						**
6204749-A-G	6336708-A-G		IR3_Dst				**
27072034-CAA-C	24925887-CAA-C		P1_r4			14×A	**
23121025-G-A	20959139-G-A						**
59026236-TACC-CACT	56880089-TACC-CACT						**
2977208-C-A	3109167-C-A						**	**
3294459-C-A	3426418-C-A						**	**
3478880-C-A	3610839-C-A						**	**
4463073-G-A	4595032-G-A						**
4722399-G-T	4854358-G-T							**
4896649-CAAA-C	5028608-CAAA-C					16×A		**
5135386-A-T	5267345-A-T						**	**
5572338-C-A	5704297-C-A						**	**
5739052-G-T	5871011-G-T							**
7081303-C-A	7213262-C-A						***	**
	9125485-C-A						**	**
9442189-G-T	9604580-G-T						**	**
10003551-G-T	10165942-G-T						***	**
	10666988-C-G							**
	10667021-T-C							**
	10667581-C-A						**	**
	10669682-T-A							**
	10686921-T-C							**
	10693079-C-A							**
	10746670-T-C							**
	10746680-T-A							**
	10749881-C-A						**	**
	10756591-TTC-T						**	**
	10759320-C-G							**
	10781340-A-T							**
	10786163-C-A						***	**
	10801503-A-C							**
	10801504-C-A							**
	10818736-T-A							**
	10818760-C-T							**
	10827080-A-T							**
	10827084-C-A							**
	10827305-C-A						**	**
	10838148-C-A						**	**
	10883597-A-C							**
	10883599-T-C							**
	10912210-A-G							**
	10919878-C-A						**	**
	10922286-T-A							**
	10922290-C-CTATA							**
	10922325-C-A							**
	10922342-T-G							**
	10977132-C-A						**	**
	10982389-T-C						***	**
	10983095-C-A						**	**
	11004062-C-A						***	**
	11010759-A-T						**	**
	11010770-T-C							**
	11020884-C-A						**	**
	11031569-ACCATTCCATTCCATTCCATTCCATTCCATTCCATT-A							**
13505011-C-A	11349335-C-A						***	**
13507803-C-A	11352127-C-A						**
13744039-A-G	11588363-A-G		DYZ17					**
	11650755-C-A		DYZ17				***	**
13912925-G-T	11792219-G-T						**	**
13943605-G-T	11822899-G-T						**	**
13952337-G-T	11831631-G-T						**	**
14075394-C-A	11954688-C-A						**	**
14267130-T-C	12146424-T-C						***	**
14674881-T-C	12562947-T-C						**
14695404-C-A	12583470-C-A						**	**
14720132-G-T	12608200-G-T						**
15160621-C-A	13048707-C-A						***	**
15185948-G-T	13074034-G-T						**	**
15641582-A-T	13529702-A-T						**	**
16055924-C-A	13944044-C-A						**	**
16424921-C-A	14313041-C-A						***	**
16426448-C-T	14314568-C-T	FTB62460					**	**
16574577-G-T	14462697-G-T						**	**
17378333-G-T	15266453-G-T						**	**
18902576-C-A	16790696-C-A						**	**
19412924-C-A	17301044-C-A						***	**
19544401-A-C	17432521-A-C						**
19809869-T-G	17697989-T-G	BY49474	P5_Prx					**
21107861-C-A	18945975-C-A						**	**
21581623-C-A	19419737-C-A						**
22473427-A-T	20311541-A-T		DYZ19					**
22473429-T-C	20311543-T-C		DYZ19					**
23062626-A-G	20900740-A-G						***	**
23123148-C-A	20961262-C-A						***	**
23338938-C-A	21177052-C-A	FTB73070					**	**
23569476-C-A	21407590-C-A						**	**
28550504-G-T	26404357-G-T							**
28684349-G-T	26538202-G-T							**
28798603-C-A	26652456-C-A						***	**
	56838379-G-T						**	**
	56844547-C-A							**
	10565-G-T							**
17713850-C-A	15601970-C-A					23×T	**
	56839768-T-A						**
13716577-G-A	11560901-G-A		DYZ17				**
20107274-G-T	17995394-G-T		P5_Dst				**
13698751-G-T	11543075-G-T		DYZ17				**
27894880-GTA-G	25748733-GTA-G		P1_Y2				**
	10678595-ATCCAC-TTCTAT						**
	10678605-CC-TT						**
13745515-A-T	11589839-A-T		DYZ17				**
18515844-G-T	16403964-G-T		P6_Dst				**
19631269-A-T	17519389-A-T		P5_Prx				**
19680083-G-T	17568203-G-T		P5_Prx				**
20220698-C-A	18058812-C-A		P5_Dst				**
20387667-G-T	18225781-G-T		P5_Dst				**
20474703-G-T	18312817-G-T		P5_Dst				**
20529001-G-T	18367115-G-T		P5_Dst				**
20748768-T-A	18586882-T-A		P4_Prx				**
20855621-T-A	18693735-T-A		P4_Dst				**
	21771569-G-T						**
24631297-G-T	22485150-G-T		P3_t2				**
25868973-G-T	23722826-G-T		P1_Y1				**
26376230-C-A	24230083-C-A		P1_Y1				**
27853937-C-T	25707790-C-T		P1_Y2				**
28096523-G-T	25950376-G-T		P1_Y2				**
20859789-GA-G	18697903-GA-G		P4_Dst			13×A	**
	10884837-CTTTCCATTCC-T						**
19209891-A-G	17098011-A-G						**
6114527-A-T	6246486-A-T						**
6114544-G-T	6246503-G-T						**
7536050-AAAAAAAAAAAAAAAAAAAAAGC-TTAAAATTAAAT	7668009-AAAAAAAAAAAAAAAAAAAAAGC-TTAAAATTAAAT						**
	9056857-AGAT-GGAC						**
	9056873-CTG-TCTCTC						**
	10663871-CCA-TCC						**
	10678039-CTCCAC-TTCAAT						**
	10747110-CACG-GACA						**
	10770733-C-T						**
	10799447-CCA-TCG						**
	10851011-ATTGCAC-TTTCCAA						**
	10877829-AA-TC						**
	10895807-GTTCCTC-ATTCTAT						**
	10911684-CATC-AATA						**
	10911722-ATGT-CTGA						**
	10911770-CGAGA-AGAGG						**
	10987289-AGCT-GGCA						**
	11010767-TCATTCCGTTC-CCACTCCATTG						**
	11030257-GCTGTTGT-CCTGGACG						**
	11031514-A-T						**
13281897-C-A	11126221-C-A						**
13336653-G-T	11180977-G-T						**
13708216-G-T	11552540-G-T		DYZ17				**
13708757-C-A	11553081-C-A		DYZ17				**
13708805-A-T	11553129-A-T		DYZ17				**
13727560-G-T	11571884-G-T		DYZ17				**
	11647708-NN-AT		DYZ17				**
14718864-T-C	12606932-T-C						**
17520774-G-T	15408894-G-T						**
23110567-G-T	20948681-G-T						**
23747234-TAGTC-ATTA	21585348-TAGTC-ATTA						**
28582762-G-T	26436615-G-T						**
	56680537-T-A						**
	56702723-A-T						**
6403154-GTA-AT	6535113-GTA-AT						**
9221706-TATATATAT-C	9384097-TATATATAT-C						**
9552316-C-A	9714707-C-A		IR3_Prx				**
18013022-TTTTC-T	15901142-TTTTC-T		P7_Dst				**
18283210-C-A	16171330-C-A		P6_Prx				**
18335262-C-A	16223382-C-A		P6_Prx				**
19209881-T-C	17098001-T-C						**
19209886-T-A	17098006-T-A						**
19704231-TGG-T	17592351-TGG-T		P5_Prx			13×G	**
20084667-C-A	17972787-C-A		P5_Dst				**
20233143-A-T	18071257-A-T		P5_Dst				**
20251651-TCCAGGGTTAC-T	18089765-TCCAGGGTTAC-T		P5_Dst				**
20364426-C-A	18202540-C-A		P5_Dst				**
20432033-C-A	18270147-C-A		P5_Dst				**
22322286-A-G	20160400-A-G		DYZ19				**
22322961-A-T	20161075-A-T		DYZ19				**
22352486-AGAGTTTTTTCCTTT-TGAGTTTTTTTCCTTC	20190600-AGAGTTTTTTCCTTT-TGAGTTTTTTTCCTTC		DYZ19				**
22481196-T-C	20319310-T-C		DYZ19				**
22481198-A-T	20319312-A-T		DYZ19				**
22481956-TTGTG-ATGTC	20320070-TTGTG-ATGTC		DYZ19				**
22501610-T-A	20339724-T-A		DYZ19				**
22501611-G-T	20339725-G-T		DYZ19				**
22501662-C-T	20339776-C-T		DYZ19				**
22501690-C-G	20339804-C-G		DYZ19				**
22504544-CCA-ACT	20342658-CCA-ACT		DYZ19				**
22504551-CTTTAGTGTTAA-GGTGTGTGATAC	20342665-CTTTAGTGTTAA-GGTGTGTGATAC		DYZ19				**
	21777804-GA-G						**
24132046-G-A	21985899-G-A		P3_b1				**
24144837-A-T	21998690-A-T		P3_b1				**
24558958-ACCCCTT-A	22412811-ACCCCTT-A		P3_t2				**
24638498-C-A	22492351-C-A		P3_t2				**
24639494-T-A	22493347-T-A		P3_t2				**
24658501-C-A	22512354-C-A		P3_b2				**
24670251-A-G	22524104-A-G		P3_b2				**
24716385-G-T	22570238-G-T		P3_b2				**
24864145-G-T	22717998-G-T		IR1_R				**
25004871-G-T	22858724-G-T		g1				**
25224804-C-A	23078657-C-A		P2_r1				**
25230840-A-G	23084693-A-G		P2_r1				**
25422190-CTT-C	23276043-CTT-C		P2_r2			16×T	**
25631770-A-T	23485623-A-T		P1_b3				**
25655310-G-T	23509163-G-T		P1_b3				**
25658880-G-T	23512733-G-T		P1_b3				**
25658918-C-A	23512771-C-A		P1_b3				**
25878440-T-A	23732293-T-A		P1_Y1				**
26730201-A-T	24584054-A-T		P1_g2			18×AAAG	**
26994345-A-G	24848198-A-G		P1_r4				**
27304482-G-T	25158335-G-T		P1_g3				**
27348740-G-T	25202593-G-T		P1_g3				**
27377330-G-T	25231183-G-T		P1_g3				**
27428779-A-T	25282632-A-T		P1_g3				**
27563934-C-A	25417787-C-A		P1_Y2				**
27761289-G-T	25615142-G-T		P1_Y2				**
27809502-TCCC-ATCT	25663355-TCCC-ATCT		P1_Y2				**
27940913-GA-G	25794766-GA-G		P1_Y2				**
28010971-GC-G	25864824-GC-G		P1_Y2				**
28261883-TCAAA-T	26115736-TCAAA-T		P1_b4			5×CAAA	**
20796094-AAC-A	18634208-AAC-A		P4_Prx			8×AC	***
25142318-G-T	22996171-G-T		g1			19×T	***
25500842-C-CA	23354695-C-CA		P2_r2			10×A	***
22503111-G-C	20341225-G-C		DYZ19				***
20230760-C-A	18068874-C-A		P5_Dst				***
25727946-G-GAT	23581799-G-GAT		P1_b3			14×AT	***
20230740-AAT-GAC	18068854-AAT-GAC		P5_Dst				***
27033095-C-CT	24886948-C-CT		P1_r4			17×T	***
22335808-C-T	20173922-C-T		DYZ19				***
20881862-CA-C	18719976-CA-C		P4_Dst			16×A	***
27062987-TGTA-T	24916840-TGTA-T		P1_r4			5×GTA	***
20771714-GAA-G	18609828-GAA-G		P4_Prx			25×A	***
18439255-G-GT	16327375-G-GT		P6_Dst			25×T	***
14356890-CTTTT-C	12236185-CTTTT-C					17×T		***
9372603-C-CT	9534994-C-CT					13×T	***
20207102-C-CA	18045216-C-CA		P5_Dst			10×A	***
22501988-G-C	20340102-G-C		DYZ19				***
22352717-G-C	20190831-G-C		DYZ19				***
25247640-C-CA	23101493-C-CA		P2_r1			15×A	***
27793173-G-C	25647026-G-C		P1_Y2				***
22311536-A-G	20149650-A-G		DYZ19				***
22352624-G-T	20190738-G-T		DYZ19				***
25717179-C-CA	23571032-C-CA		P1_b3			15×A	***
9370162-C-T	9532553-C-T						***
22360196-CT-AG	20198310-CT-AG		DYZ19				***
22473391-G-T	20311505-G-T	FT459442	DYZ19				***
13481425-GGTGATC-CGAGATA	11325749-GGTGATC-CGAGATA						***
21023249-GT-G,GTT	18861363-GT-G,GTT		P4_Dst			14×T	***
22504309-T-A	20342423-T-A		DYZ19				***
27791108-G-T	25644961-G-T		P1_Y2				***
5200373-G-A	5332332-G-A							***
6010204-C-A	6142163-C-A							***
6759230-C-A	6891189-C-A							***
7042962-G-T	7174921-G-T						***	***
7098765-C-A	7230724-C-A						***	***
8785587-C-T	8917546-C-T							***
10023405-C-A	10185796-C-A						***	***
10023813-C-A	10186204-C-A							***
	10678087-C-A							***
	10880695-T-C							***
	10954612-A-C							***
	11030807-A-C,G							***
	11031723-C-A							***
13454568-A-G	11298892-A-G							***
13468310-T-C	11312634-T-C							***
	11677303-GA-G		DYZ17					***
13804320-G-T	11683614-G-T		DYZ17					***
14065911-CA-C	11945205-CA-C						***	***
15984499-C-A	13872619-C-A							***
16001436-G-T	13889556-G-T						***	***
16292054-C-A	14180174-C-A						***	***
17103887-G-T	14992007-G-T						***	***
17301276-G-T	15189396-G-T							***
17883677-C-A	15771797-C-A							***
18397900-GTA-G	16286020-GTA-G		P6_Gap				***	***
18838704-TA-T	16726824-TA-T							***
19258424-C-A	17146544-C-A						***	***
19422948-TCTC-T	17311068-TCTC-T					5×CTC		***
21397544-C-A	19235658-C-A						***	***
22164592-C-A	20002706-C-A							***
22300719-C-A	20138833-C-A		DYZ19					***
23352367-T-C	21190481-T-C						***	***
23803411-C-A	21641525-C-A						***	***
23876560-G-T	21714674-G-T							***
24422457-C-A	22276310-C-A							***
24475079-C-A	22328932-C-A							***
24517704-C-A	22371557-C-A							***
	56763537-G-T							***
	56763543-A-T							***
20872427-A-T	18710541-A-T		P4_Dst				***
13256130-C-A	11100454-C-A						***
18463148-G-T	16351268-G-T		P6_Dst				***
22722338-CT-C,CTT	20560452-CT-C,CTT					24×T	***
15904149-CAA-C,CA	13792269-CAA-C,CA					20×A	***
22311531-T-A	20149645-T-A		DYZ19				***
8854353-T-C	8986312-T-C						***
20479175-A-AT	18317289-A-AT		P5_Dst			8×T	***
19639332-C-A	17527452-C-A		P5_Prx				***
20573243-G-T	18411357-G-T		P5_Dst				***
24632587-G-T	22486440-G-T		P3_t2				***
25918151-G-T	23772004-G-T		P1_Y1				***
27782214-G-T	25636067-G-T		P1_Y2				***
28045739-C-A	25899592-C-A		P1_Y2				***
6308050-GCA-G	6440009-GCA-G		IR3_Dst			9×CA	***
13723432-G-C	11567756-G-C		DYZ17				***
9320681-C-T	9483072-C-T						***
19647566-C-A	17535686-C-A		P5_Prx				***
20867012-G-T	18705126-G-T		P4_Dst				***
20894638-A-T	18732752-A-T		P4_Dst				***
21002338-C-T	18840452-C-T		P4_Dst				***
20751042-GA-G	18589156-GA-G		P4_Prx			13×A	***
	10807293-TTCAA-GTCAT						***
	10845703-TTCCC-CTCCA						***
	10911787-CC-A						***
	10949134-A-ATTACT						***
	10949148-TACA-ATCT						***
	10949165-TTCT-CTCC						***
13253393-TCGG-CCAGTT	11097717-TCGG-CCAGTT						***
13323494-CAA-C,CAAA	11167818-CAA-C,CAAA					24×A	***
13461897-AAACC-CAACT	11306221-AAACC-CAACT						***
13481313-AT-CA	11325637-AT-CA						***
13481403-TAGAAAAG-AAGGCAAC	11325727-TAGAAAAG-AAGGCAAC						***
13489069-AAGGCGCTT-TAGGCACTC	11333393-AAGGCGCTT-TAGGCACTC						***
13489695-CCGT-ACGG	11334019-CCGT-ACGG						***
13722069-GGAATA-G,GGAATG	11566393-GGAATA-G,GGAATG		DYZ17				***
13722084-C-A,GGAATA	11566408-C-A,GGAATA		DYZ17				***
13724402-C-A	11568726-C-A		DYZ17				***
17919855-GA-AA,G	15807975-GA-AA,G					25×A	***
	56826628-CATCCCGTTT-TGTCCCGTTC						***
	56827478-GTTCCATTCG-ATTCCATTCA,GTTCCATTCA						***
	56828824-CATTGCATTCAATTCCATTC-AATTCCATTCCATTCCATTT						***
	56830481-ATCT-GTCC						***
	56830529-CCATTGCATTCTGCTGAATTCCATTGCATTCC-TCATTGCATTCCATTGAATTCCATTGCATTCT						***
	56831390-ATTC-TTTCCACTTCATTT						***
	56831409-TGTTCCATTC-CGTTTCATTCCATTG,CTTTTCATTCCATTC						***
	56834455-TTCCATTCCCTTCCATTA-CTCCATTCCATTCCCTTCCCTTC						***
	56834897-CAGG-CAGC,TAGT						***
	56834966-C-A						***
	56835426-CT-CA,TT						***
	56835708-CAT-TAC						***
	56836683-TG-CA						***
	56846825-GAGAA-GAGAT,TAGAT						***
	56850715-GA-CG,GG						***
7490533-G-T	7622492-G-T		IR1_L				***
9543845-T-A	9706236-T-A		IR3_Prx				***
9545908-A-AC	9708299-A-AC		IR3_Prx				***
9564790-G-T	9727181-G-T		IR3_Prx				***
19829299-C-AT	17717419-C-AT		P5_Prx			27×T	***
19979864-CTTTT-C,CTTT	17867984-CTTTT-C,CTTT		P5_Prx			28×T	***
20084748-C-A	17972868-C-A		P5_Dst				***
20098149-G-T	17986269-G-T		P5_Dst				***
20108290-C-A	17996410-C-A		P5_Dst				***
20142236-C-A	18030356-C-A		P5_Dst				***
20211455-T-C	18049569-T-C		P5_Dst				***
20346436-GTGTAGTAAAAGT-G	18184550-GTGTAGTAAAAGT-G		P5_Dst				***
20506047-GCACT-TCACC	18344161-GCACT-TCACC		P5_Dst				***
20858382-AT-A	18696496-AT-A		P4_Dst				***
20883133-C-A	18721247-C-A		P4_Dst				***
20884980-G-T	18723094-G-T		P4_Dst				***
20897829-C-A	18735943-C-A		P4_Dst				***
20909697-AT-A	18747811-AT-A		P4_Dst				***
22296006-G-A	20134120-G-A		DYZ19				***
22311521-CCTC-ACTG	20149635-CCTC-ACTG		DYZ19				***
22360090-ACC-ACT,CCT	20198204-ACC-ACT,CCT		DYZ19				***
22492650-AT-CA	20330764-AT-CA		DYZ19				***
22494237-GTGTT-CTGTC	20332351-GTGTT-CTGTC		DYZ19				***
22494389-T-G	20332503-T-G		DYZ19				***
22499842-GATC-CTTT,GTTC	20337956-GATC-CTTT,GTTC		DYZ19				***
22500317-C-A	20338431-C-A		DYZ19				***
22504481-G-A	20342595-G-A		DYZ19				***
23678682-GT-G	21516796-GT-G					14×T	***
24018449-C-A	21872302-C-A						***
24035213-CTCAAACATA-ACTCAAACATA,CTCAAACAT	21889066-CTCAAACATA-ACTCAAACATA,CTCAAACAT						***
24548125-C-A	22401978-C-A		P3_t2				***
24586008-G-T	22439861-G-T		P3_t2				***
24616369-G-T	22470222-G-T		P3_t2				***
24631744-GGGGT-G	22485597-GGGGT-G		P3_t2				***
24632278-G-T	22486131-G-T		P3_t2				***
24713450-T-A	22567303-T-A		P3_b2				***
24757525-G-T	22611378-G-T		P3_b2				***
25124690-C-A	22978543-C-A		g1				***
25185199-G-T	23039052-G-T		g1				***
25280367-CTTT-C,CT	23134220-CTTT-C,CT		P2_r1			26×T	***
25650092-G-T	23503945-G-T		P1_b3				***
25901082-C-A	23754935-C-A		P1_Y1				***
26946204-CTTA-ATT,CTT	24800057-CTTA-ATT,CTT		P1_r3				***
27125789-GA-G	24979642-GA-G		P1_g3			8×A	***
27193815-G-T	25047668-G-T		P1_g3				***
27198886-CAA-C	25052739-CAA-C		P1_g3			11×A	***
27207208-G-T	25061061-G-T		P1_g3				***
27361331-G-T	25215184-G-T		P1_g3				***
27381821-A-G	25235674-A-G		P1_g3				***
27541275-G-T	25395128-G-T		P1_Y2				***
27579077-C-CA	25432930-C-CA		P1_Y2			16×A	***
27709182-G-T	25563035-G-T		P1_Y2				***
27792631-A-T	25646484-A-T		P1_Y2				***
27805876-C-A	25659729-C-A		P1_Y2				***
27859756-C-A	25713609-C-A		P1_Y2				***
27936764-CA-C,CAA	25790617-CA-C,CAA		P1_Y2			15×A	***
28245703-C-A	26099556-C-A		P1_b4				***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit	POSITION-REF-ALT (hg19)	POSITION-REF-ALT (hg38)	Note
Manual	20007955-A-G	17896075-A-G	2A 1G
Manual	6274770-G-A	6406729-G-A	1A

Williamson

Tree Position

Unique Mutations

Mutation Notes: