McIan

FTDNA: 115596, BigY2: 115596
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2187 > Z2201 > BY279 > BY59669

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
115596		BigY2
115596
5674779-C-T 5806738-C-T A+
13449900-C-A 11294224-C-A A*
28817016-T-A 26670869-T-A A*
6967315-G-A 7099274-G-A BY62594 YY++
8355745-T-G 8487704-T-G BY71934 YY++
8411886-G-T 8543845-G-T YP4624 YY++
8818019-T-A 8949978-T-A BY76093 YY++
9072522-G-GTTGTAACAC 9234913-G-GTTGTAACAC +*
13815602-G-A 11694896-G-A BY90394 DYZ17 ***+
14185083-G-C 12064377-G-C BY156411 YY++
15524064-G-T 13412184-G-T BY102224 YY++
15832452-C-A 13720572-C-A BY104434 YY++
17946208-C-G 15834328-C-G BY118639 YY++
21053390-A-C 18891504-A-C BY130155 YY++
21220390-T-G 19058504-T-G BY131205 Y**+
22460514-G-T 20298628-G-T BY220544 DYZ19 ++
22462901-G-T 20301015-G-T FT458084 DYZ19 ++
22463624-G-T 20301738-G-T BY221155 DYZ19 ++
22465506-A-T 20303620-A-T FT458546 DYZ19 ++
22860120-G-A 20698234-G-A BY141289 YY++
7582-G-C +
22432614-A-T 20270728-A-T BY218099 DYZ19 ****
16701969-G-A 14590089-G-A CTS6154 ****
2888802-C-A 3020761-C-A ****
14301686-G-T 12180980-G-T ****
17567396-C-A 15455516-C-A ****
13838485-AGGAATGGAAT-A 11717779-AGGAATGGAAT-A DYZ17 9×GGAAT**
13329241-G-T 11173565-G-T **
16033724-C-A 13921844-C-A **
7084498-C-A 7216457-C-A **
7391809-C-A 7523768-C-A **
18932376-G-A 16820496-G-A **
18738188-C-A 16626308-C-A **
4503087-T-C 4635046-T-C BY58197 **
4389393-T-A 4521352-T-A **
14339106-CTTTTTT-C 12218401-CTTTTTT-C 19×T**
16147508-G-A 14035628-G-A P8_Dst **
11003690-T-C **
10764609-C-A **
15936964-T-A 13825084-T-A **
22703593-C-T 20541707-C-T **
10764642-T-C **
13984178-C-A 11863472-C-A **
10662072-G-T **
8290942-C-A 8422901-C-A **
8398840-C-CAA 8530799-C-CAA 17×A**
4040435-G-T 4172394-G-T **
21054473-C-A 18892587-C-A **
18329505-T-TC 16217625-T-TC P6_Prx **
27466739-G-GAA 25320592-G-GAA P1_Y2 **
18792743-C-A 16680863-C-A **
10892569-A-C **
16001037-C-A 13889157-C-A **
10971559-T-C **
10971568-T-A **
11649172-C-A DYZ17 **
10935599-T-TTCCAAA **
10935627-C-CA **
24598024-A-AC 22451877-A-AC P3_t2 **
20326063-A-T 18164177-A-T P5_Dst **
20741858-T-TC 18579972-T-TC P4_Prx **
10909684-A-C **
5219498-T-G 5351457-T-G 9×A**
10898345-C-T **
18022309-C-A 15910429-C-A **
10898340-C-G **
10898350-T-TTCTTC **
10898357-C-G **
10956522-C-T **
13996562-C-A 11875856-C-A **
14076958-AT-A 11956252-AT-A 9×T**
4757739-C-A 4889698-C-A **
16305920-G-A 14194040-G-A **
10780153-C-T FT178487 **
13871430-C-A 11750724-C-A **
14253254-CAAAA-C 12132548-CAAAA-C 14×A**
11003712-C-A **
17440303-C-A 15328423-C-A **
56846806-T-C **
5231182-C-A 5363141-C-A **
10919123-A-G **
15260726-C-T 13148810-C-T **
7269927-T-C 7401886-T-C **
7243273-C-A 7375232-C-A **
56830169-A-T **
13215503-C-A 11059827-C-A **
10956504-C-A **
10956508-G-C **
10956511-A-C **
10956521-C-T **
23252500-A-C 21090614-A-C **
22542453-TC-T 20380567-TC-T **
11659524-C-A DYZ17 **
20998320-A-G 18836434-A-G P4_Dst **
10887393-C-A **
10764583-T-C **
20761028-A-C 18599142-A-C P4_Prx **
13326108-C-A 11170432-C-A **
22132948-C-A 19971062-C-A **
13996328-C-A 11875622-C-A **
2785214-C-A 2917173-C-A **
21106859-C-A 18944973-C-A **
10973655-T-C **
19129507-C-A 17017627-C-A **
8908038-C-A 9039997-C-A **
13264749-C-A 11109073-C-A **
8736799-C-A 8868758-C-A **
13348013-C-A 11192337-C-A **
15912055-CTTTTTT-C 13800175-CTTTTTT-C 21×T**
20951195-T-TA 18789309-T-TA P4_Dst **
27494-C-A **
8159371-C-A 8291330-C-A **
4261692-C-A 4393651-C-A **
5727946-C-A 5859905-C-A FT208809 **
15140878-C-A 13028965-C-A **
16006043-C-A 13894163-C-A **
7363157-TAAAAA-T 7495116-TAAAAA-T 18×A**
10971667-C-A **
12379466-G-A FT50211 **
22122906-C-A 19961020-C-A **
16070758-C-A 13958878-C-A **
10777620-G-T **
10780148-T-C **
15866867-C-A 13754987-C-A **
4144179-C-A 4276138-C-A **
7082900-C-A 7214859-C-A **
23833043-C-A 21671157-C-A **
18756331-C-A 16644451-C-A **
15059808-C-A 12947900-C-A **
10764573-T-C **
10764588-T-C **
10764593-T-C **
28519061-C-A 26372914-C-A **
11030070-A-T **
14051799-C-T 11931093-C-T **
2860106-A-T 2992065-A-T **
11013558-C-A **
23255226-C-A 21093340-C-A **
19127795-G-T 17015915-G-T **
11003728-C-A **
16719798-C-A 14607918-C-A **
7320399-C-A 7452358-C-A **
10787390-C-A **
7371869-C-A 7503828-C-A **
5829278-C-A 5961237-C-A **
27570908-A-T 25424761-A-T P1_Y2 **
21189595-C-A 19027709-C-A **
21752768-G-T **
9211563-A-C 9373954-A-C **
3620683-C-A 3752642-C-A **
11013893-C-A **
7184842-C-A 7316801-C-A **
10764627-C-T **
10764624-C-A **
22346212-G-T 20184326-G-T DYZ19 **
11015932-C-A **
9354161-C-A 9516552-C-A **
7897643-G-T 8029602-G-T **
4957680-G-T 5089639-G-T **
7861088-C-A 7993047-C-A **
10909743-A-C **
14029374-C-A 11908668-C-A **
25201234-C-A 23055087-C-A g1 **
14981779-C-CAAA 12869855-C-CAAA 14×A**
11013567-A-T **
11013592-G-C **
17605567-C-A 15493687-C-A **
14319546-C-T 12198840-C-T **
15731322-C-A 13619442-C-A **
17692087-C-A 15580207-C-A **
17246938-A-T 15135058-A-T **
9354565-C-A 9516956-C-A **
3410312-C-A 3542271-C-A **
11013528-C-G **
11013564-C-G **
11013607-C-G **
11013623-C-G **
7417526-C-A 7549485-C-A **
18565234-C-CTTATTTAT 16453354-C-CTTATTTAT 12×TTAT**
27991624-T-TGG 25845477-T-TGG P1_Y2 **
14180729-C-A 12060023-C-A **
4547821-C-A 4679780-C-A **
14461327-C-A 12340600-C-A **
17093678-C-A 14981798-C-A **
14994256-C-A 12882341-C-A **
18853310-CT-C 16741430-CT-C **
7239661-C-A 7371620-C-A **
7159299-C-A 7291258-C-A **
7105074-G-A 7237033-G-A **
15218517-C-A 13106603-C-A **
7362629-C-A 7494588-C-A **
17013103-C-A 14901223-C-A **
8408455-C-A 8540414-C-A **
5107427-G-T 5239386-G-T **
20998278-G-T 18836392-G-T P4_Dst **
10885028-C-A **
17504697-C-A 15392817-C-A **
13196038-C-A 11040362-C-A **
14598921-G-T 12487121-G-T **
16428021-G-T 14316141-G-T **
17774954-G-T 15663074-G-T **
23119953-C-A 20958067-C-A **
11662923-G-T DYZ17 **
5818498-C-A 5950457-C-A **
13855232-G-T 11734526-G-T DYZ17 **
10969465-TTCCAC-T **
21709023-C-A 19547137-C-A **
15137882-C-A 13025969-C-A **
21391563-C-A 19229677-C-A **
13884182-T-C 11763476-T-C **
21624531-C-A 19462645-C-A **
14200474-C-A 12079768-C-A **
27576071-C-A 25429924-C-A P1_Y2 **
7229008-C-A 7360967-C-A **
10848182-C-A **
14757359-C-A 12645428-C-A **
6648129-C-A 6780088-C-A **
9442149-C-A 9604540-C-A **
7242581-C-A 7374540-C-A **
8279906-C-A 8411865-C-A **
10781714-T-A **
4215604-G-T 4347563-G-T FT412381 **
6767875-C-A 6899834-C-A **
5625452-C-A 5757411-C-A **
26514931-TCACACA-T 24368784-TCACACA-T P1_Y1 9×CA**
20707553-G-T 18545667-G-T P4_Prx **
6882184-C-A 7014143-C-A **
7723579-G-A 7855538-G-A **
16479891-A-C 14368011-A-C **
18008646-T-TC 15896766-T-TC P7_Dst **
19849227-A-G 17737347-A-G P5_Prx **
10752546-C-A **
22954617-C-A 20792731-C-A **
6516137-C-A 6648096-C-A **
3092693-G-T 3224652-G-T **
23623207-G-T 21461321-G-T **
10956497-T-C **
56835331-C-T **
5756072-G-T 5888031-G-T **
10971637-C-T **
15218797-G-A 13106883-G-A **
14559200-C-A 12447401-C-A **
10686809-G-T **
13485596-G-C 11329920-G-C **
9666726-C-A 9829117-C-A IR3_Prx **
14506772-C-A 12394977-C-A **
7143506-C-A 7275465-C-A **
16354979-A-C 14243099-A-C **
14470588-C-G 12349857-C-G **
2865833-A-C 2997792-A-C **
3116092-C-A 3248051-C-A **
3223241-C-T 3355200-C-T **
3389956-C-A 3521915-C-A **
3545827-A-G 3677786-A-G **
3609697-T-G 3741656-T-G **
3620792-C-T 3752751-C-T **
3799961-G-T 3931920-G-T **
3799965-A-G 3931924-A-G **
3850155-C-A 3982114-C-A **
3994704-A-G 4126663-A-G **
4133361-T-G 4265320-T-G **
4302648-T-G 4434607-T-G **
4383602-C-A 4515561-C-A **
4443927-C-A 4575886-C-A **
4449157-T-C 4581116-T-C **
4527495-C-A 4659454-C-A **
4554546-A-G 4686505-A-G **
4566722-C-A 4698681-C-A **
4887865-T-C 5019824-T-C **
4911890-G-T 5043849-G-T **
4920239-TG-T 5052198-TG-T **
4931145-C-A 5063104-C-A **
5073753-A-C 5205712-A-C **
5172184-A-C 5304143-A-C **
5172211-A-AC 5304170-A-AC **
5189147-C-A 5321106-C-A **
5247286-G-C 5379245-G-C **
5274021-C-A 5405980-C-A **
5543760-T-C 5675719-T-C **
5549360-C-A 5681319-C-A **
5605972-C-A 5737931-C-A **
5636995-G-T 5768954-G-T **
5637040-G-T 5768999-G-T **
5644091-C-A 5776050-C-A **
5755936-T-C 5887895-T-C **
5793932-C-A 5925891-C-A **
5824782-T-A 5956741-T-A **
5844268-C-A 5976227-C-A **
5844278-G-T 5976237-G-T **
5915984-A-T 6047943-A-T **
5965627-A-G 6097586-A-G **
5977032-A-C 6108991-A-C **
6130563-C-A 6262522-C-A **
6354317-G-T 6486276-G-T **
6368565-A-C 6500524-A-C **
6384733-G-T 6516692-G-T **
6410937-G-T 6542896-G-T **
6490797-C-A 6622756-C-A **
6671409-C-A 6803368-C-A **
6671759-T-A 6803718-T-A **
6699095-A-T 6831054-A-T **
7061293-A-G 7193252-A-G **
7078364-C-A 7210323-C-A **
7090861-C-A 7222820-C-A **
7101082-C-A 7233041-C-A **
7156984-T-C 7288943-T-C **
7180018-A-C 7311977-A-C **
7281004-G-T 7412963-G-T **
7306459-A-C 7438418-A-C **
7306604-C-A 7438563-C-A **
7314387-AT-A 7446346-AT-A **
7336288-T-C 7468247-T-C **
7451270-AT-A 7583229-AT-A IR1_L 9×T**
7541254-C-A 7673213-C-A **
7579092-C-A 7711051-C-A **
7590688-G-T 7722647-G-T **
7866174-T-G 7998133-T-G **
8080305-A-G 8212264-A-G **
8333623-CCTACTTCTTCTTCTTCTT-C 8465582-CCTACTTCTTCTTCTTCTT-C **
8673169-C-G 8805128-C-G **
8761991-T-G 8893950-T-G **
8807049-C-A 8939008-C-A **
9451384-C-A 9613775-C-A **
9499072-A-C 9661463-A-C **
9891073-A-G 10053464-A-G **
9936558-C-G 10098949-C-G **
9944741-C-A 10107132-C-A **
9983304-A-T 10145695-A-T **
10010560-T-G 10172951-T-G **
10032310-T-C 10194701-T-C **
10652636-T-G **
10670753-C-G **
10671517-C-A **
10693430-C-G **
10749101-G-T **
10764618-T-A **
10764625-C-A **
10785060-A-G **
10789097-C-A **
10819022-A-C **
10825291-A-ATTCGTGTTAT **
10930619-T-G **
10933091-T-A **
10944628-C-A **
10964488-C-A **
10971966-C-A FT438668 **
10994176-A-C **
11003737-C-CCCTT **
11005058-C-A **
11013509-CTCCAT-C **
11013537-C-T **
11034270-T-TA **
11034284-C-G **
11034290-A-T **
13196973-T-G 11041297-T-G **
13217974-C-T 11062298-C-T **
13218002-AC-A 11062326-AC-A **
13274374-G-T 11118698-G-T **
13316212-C-T 11160536-C-T **
13329512-C-T 11173836-C-T **
13447166-C-A 11291490-C-A **
13463546-C-A 11307870-C-A FT106529 **
13468586-C-A 11312910-C-A **
13485815-C-A 11330139-C-A **
13565040-C-A 11409364-C-A **
13594215-T-C 11438539-T-C **
13605632-C-A 11449956-C-A **
11662809-A-G DYZ17 **
11672184-C-A DYZ17 **
13930367-G-T 11809661-G-T **
13941789-C-A 11821083-C-A **
13944652-C-A 11823946-C-A **
14088312-TA-T 11967606-TA-T **
14143955-C-A 12023249-C-A **
14143956-T-C 12023250-T-C **
14149250-C-T 12028544-C-T **
14153139-T-C 12032433-T-C **
14230217-A-G 12109511-A-G **
14297138-C-A 12176432-C-A **
14302980-A-G 12182274-A-G **
14319532-TA-T 12198826-TA-T **
14319543-A-G 12198837-A-G **
14347885-A-C 12227180-A-C **
14356478-A-G 12235773-A-G **
14422474-C-A 12301749-C-A **
14445654-C-A 12324927-C-A **
14502592-C-T 12390797-C-T **
14539297-G-A 12427498-G-A **
14558606-G-A 12446807-G-A **
14561775-C-A 12449976-C-A **
14593488-T-C 12481688-T-C **
14826537-C-A 12714604-C-A **
14888062-C-A 12776128-C-A **
15179020-A-G 13067106-A-G **
15201517-T-C 13089603-T-C **
15366017-G-T 13254137-G-T **
15424250-G-A 13312370-G-A **
15770786-G-T 13658906-G-T FT400081 **
15792746-G-C 13680866-G-C **
15843213-C-G 13731333-C-G **
15844867-C-A 13732987-C-A **
15936944-C-A 13825064-C-A **
16017053-C-A 13905173-C-A **
16041219-G-T 13929339-G-T **
16041998-A-T 13930118-A-T **
16216751-C-A 14104871-C-A **
16271201-T-C 14159321-T-C **
16279149-C-A 14167269-C-A **
16316870-T-C 14204990-T-C **
16430785-C-A 14318905-C-A **
16432848-CA-C 14320968-CA-C **
16488025-C-A 14376145-C-A **
16607761-A-C 14495881-A-C **
16738668-T-C 14626788-T-C **
16826764-C-T 14714884-C-T **
16842727-T-G 14730847-T-G **
16848484-C-A 14736604-C-A **
17055924-G-A 14944044-G-A **
17098860-A-G 14986980-A-G **
17170314-G-T 15058434-G-T **
17177109-G-T 15065229-G-T **
17367808-C-A 15255928-C-A **
17382570-T-C 15270690-T-C **
17490252-T-G 15378372-T-G FT169687 **
17512500-C-A 15400620-C-A **
17605359-T-G 15493479-T-G **
17929494-G-T 15817614-G-T **
18071892-G-T 15960012-G-T **
18135140-T-G 16023260-T-G **
18166037-T-G 16054157-T-G **
18197837-A-C 16085957-A-C **
18263305-G-T 16151425-G-T **
18618994-G-T 16507114-G-T **
18873974-C-A 16762094-C-A **
18890915-C-A 16779035-C-A **
18906395-T-G 16794515-T-G **
18932383-G-A 16820503-G-A **
18932402-T-G 16820522-T-G **
18980583-T-C 16868703-T-C **
19034105-A-G 16922225-A-G **
19052418-A-AG 16940538-A-AG **
19071035-A-G 16959155-A-G **
19121979-G-A 17010099-G-A **
19209763-C-T 17097883-C-T **
19302887-C-A 17191007-C-A **
19325772-C-A 17213892-C-A **
19351608-C-T 17239728-C-T **
19535700-T-C 17423820-T-C **
19539709-A-G 17427829-A-G **
19720843-T-C 17608963-T-C P5_Prx **
19753743-C-A 17641863-C-A P5_Prx **
19816686-A-G 17704806-A-G P5_Prx **
20425960-C-G 18264074-C-G P5_Dst **
20574711-T-C 18412825-T-C P5_Dst **
20622962-A-C 18461076-A-C P4_Prx **
21187846-G-A 19025960-G-A **
21196659-G-C 19034773-G-C **
21318279-C-T 19156393-C-T FT351441 **
21380690-C-A 19218804-C-A **
21522217-C-G 19360331-C-G **
21584515-C-T 19422629-C-T **
21691906-C-A 19530020-C-A **
21697410-G-A 19535524-G-A **
21824679-C-A 19662793-C-A **
21945333-T-G 19783447-T-G **
21974922-G-T 19813036-G-T **
22000413-C-A 19838527-C-A **
22055443-T-G 19893557-T-G **
22085779-C-A 19923893-C-A **
22093079-A-T 19931193-A-T **
22146708-C-A 19984822-C-A **
22167199-T-C 20005313-T-C **
22173549-C-A 20011663-C-A **
22483895-G-A 20322009-G-A DYZ19 **
22548423-C-G 20386537-C-G **
22659658-A-G 20497772-A-G **
22662009-T-C 20500123-T-C **
22954608-C-T 20792722-C-T **
22991193-G-T 20829307-G-T **
23019749-C-T 20857863-C-T **
23065532-C-G 20903646-C-G **
23120097-C-A 20958211-C-A **
23311264-C-G 21149378-C-G **
23460122-G-T 21298236-G-T **
23786351-C-A 21624465-C-A **
23875587-C-A 21713701-C-A **
23997459-G-T 21851312-G-T **
24080297-T-C 21934150-T-C P3_b1 **
24408028-G-T 22261881-G-T **
24408192-C-A 22262045-C-A **
24408193-AC-A 22262046-AC-A **
24458776-AAAG-A 22312629-AAAG-A **
24587901-T-C 22441754-T-C P3_t2 **
24883591-T-A 22737444-T-A g1 **
25312111-T-C 23165964-T-C P2_r1 **
26228724-TA-T 24082577-TA-T P1_Y1 **
26366424-T-A 24220277-T-A P1_Y1 **
27527351-T-C 25381204-T-C P1_Y2 **
27677527-A-G 25531380-A-G P1_Y2 **
27699996-C-A 25553849-C-A P1_Y2 **
28492523-C-A 26346376-C-A **
28498295-A-G 26352148-A-G **
28534397-T-C 26388250-T-C FT93464 **
28550009-G-A 26403862-G-A **
28613014-C-A 26466867-C-A **
28655557-G-T 26509410-G-T **
28660485-T-C 26514338-T-C **
28697907-C-A 26551760-C-A **
28746398-A-G 26600251-A-G **
28747626-T-C 26601479-T-C **
28779760-C-T 26633613-C-T **
56836548-A-G **
56873793-C-A **
56873802-C-A **
25134583-C-T 22988436-C-T g1 ***
22359150-C-G 20197264-C-G DYZ19 ***
22366762-G-T 20204876-G-T DYZ19 ***
19937074-C-G 17825194-C-G S5556FGC82858 P5_Prx ***
20242702-G-C 18080816-G-C P5_Dst ***
22469659-C-T 20307773-C-T BY22815 DYZ19 ***
19937580-G-A 17825700-G-A P5_Prx ***
19937585-G-A 17825705-G-A P5_Prx ***
22469642-A-G 20307756-A-G FGC29214 DYZ19 ***
7811532-C-T 7943491-C-T Z12229 ***
22252339-G-T 20090453-G-T DYZ19 ***
22283991-C-T 20122105-C-T DYZ19 ***
22300635-C-T 20138749-C-T DYZ19 ***
22333800-G-T 20171914-G-T DYZ19 ***
22340005-C-G 20178119-C-G DYZ19 ******
22361408-G-C 20199522-G-C DYZ19 ***
22424979-A-T 20263093-A-T DYZ19 ***
22456603-T-A 20294717-T-A DYZ19 ***
24816655-T-C 22670508-T-C P3_b2 ***
24838066-T-A 22691919-T-A P3_b2 ***
25134610-G-A 22988463-G-A BY28186 g1 ***
25134613-C-T 22988466-C-T BY28187 g1 ***
25134615-G-C 22988468-G-C BY28188 g1 ***
25134616-G-C 22988469-G-C BY28189 g1 ***
25134627-T-C 22988480-T-C BY28190 g1 ***
26141373-A-G 23995226-A-G BY2451 P1_Y1 ***
16964260-GAAAA-G 14852380-GAAAA-G 15×A***
13450104-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCCATTCCATTCCAT 11294428-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCCATTCCATTCCAT ***
56833285-C-A ***
6953256-C-A 7085215-C-A ***
13992191-CA-C,CAA 11871485-CA-C,CAA 22×A***
14552175-TAA-T 12440376-TAA-T 13×A***
56833737-C-T ***
10911982-C-A FT436341 ***
23825046-T-TTA 21663160-T-TTA 9×TA***
14772705-A-G 12660774-A-G ***
58979389-A-T 56833242-A-T ***
10691321-C-A ***
17175254-G-T 15063374-G-T ***
13468322-C-A 11312646-C-A ***
13489491-G-A,T 11333815-G-A,T ***
6293362-TG-G,TT 6425321-TG-G,TT IR3_Dst ***
12730473-ATTTTTT-A 21×T***
18420357-TA-T 16308477-TA-T P6_Gap 8×A***
7255958-G-T 7387917-G-T ***
8698672-C-A 8830631-C-A ***
9907689-G-T 10070080-G-T ***
19143125-ATTT-A,AT 17031245-ATTT-A,AT 17×T***
14384504-T-A 12263800-T-A ***
13644648-C-A 11488972-C-A ***
19071508-C-A 16959628-C-A ***
4136796-C-A 4268755-C-A ***
5186908-C-T 5318867-C-T ***
7040092-C-T 7172051-C-T ***
7200461-A-T 7332420-A-T ***
9013257-CAAAAAAA-C 9175648-CAAAAAAA-C 18×A***
10031361-A-G 10193752-A-G ***
10746906-TCA-T,TCT ***
10801621-C-A ***
13642554-C-T 11486878-C-T ***
14451912-C-A 12331185-C-A ***
14526989-G-T 12415190-G-T ***
14960423-A-T 12848498-A-T ***
15332215-G-T 13220333-G-T ***
15332222-C-T 13220340-C-T ***
15761911-A-C 13650031-A-C ***
16095749-A-G 13983869-A-G ***
17028945-A-G 14917065-A-G ***
22172552-G-T 20010666-G-T ***
24002996-C-A 21856849-C-A ***
27021904-C-T 24875757-C-T P1_r4 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.