McCarthy
FTDNA: 107457, BigY2: 107457Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 107457 | BigY2 107457 |
---|---|---|---|---|---|---|---|---|---|
16771474-A-G | 14659594-A-G | BY109989 | Y | Y | + | + | |||
18903217-A-G | 16791337-A-G | BY124667 | Y | Y | + | + | |||
28030723-A-AT | 25884576-A-AT | P1_Y2 | *** | * | |||||
18890549-T-A | 16778669-T-A | BY124552 | ** | ||||||
28622721-C-A | 26476574-C-A | ** | ** | ||||||
28763367-C-A | 26617220-C-A | ** | ** | ||||||
4416697-G-A | 4548656-G-A | FT366707 | ** | ||||||
19407623-TC-T | 17295743-TC-T | ** | |||||||
21012234-A-T | 18850348-A-T | P4_Dst | ** | ||||||
6948125-G-T | 7080084-G-T | ** | |||||||
14933565-TC-T | 12821630-TC-T | ** | |||||||
15595013-C-A | 13483133-C-A | ** | |||||||
28771624-C-A | 26625477-C-A | Z25372 | ** | ||||||
13485739-A-G | 11330063-A-G | ** | |||||||
7099082-C-A | 7231041-C-A | ** | |||||||
58980830-C-T | 56834683-C-T | ** | |||||||
18619005-A-G | 16507125-A-G | ** | |||||||
19271545-C-A | 17159665-C-A | ** | |||||||
58976521-A-G | 56830374-A-G | ** | |||||||
10992962-ACCATT-A | ** | ||||||||
14427519-AT-A | 12306794-AT-A | 10×T | ** | ||||||
17927976-C-A | 15816096-C-A | ** | |||||||
10799561-A-T | ** | ||||||||
18779448-C-A | 16667568-C-A | ** | |||||||
10799639-C-G | ** | ||||||||
10799647-C-A | ** | ||||||||
24300814-T-TC | 22154667-T-TC | P3_t1 | ** | ||||||
13488882-G-A | 11333206-G-A | ** | |||||||
18564994-T-A | 16453114-T-A | ** | |||||||
10807250-C-A | ** | ||||||||
10799594-C-G | ** | ||||||||
14531437-C-A | 12419638-C-A | ** | |||||||
10799609-C-G | ** | ||||||||
6786689-C-A | 6918648-C-A | ** | |||||||
22146764-C-A | 19984878-C-A | ** | |||||||
17721024-T-C | 15609144-T-C | ** | |||||||
10691082-GCACTG-A | ** | ||||||||
10691108-C-CT | ** | ||||||||
10691109-C-CTG | ** | ||||||||
15209257-C-A | 13097343-C-A | ** | |||||||
21863134-C-A | 19701248-C-A | ** | |||||||
13856708-AAATGG-A | 11736002-AAATGG-A | DYZ17 | 5×AATGG | ** | |||||
10691103-C-A | ** | ||||||||
10807257-T-A | ** | ||||||||
16462897-C-A | 14351017-C-A | ** | |||||||
7317224-C-A | 7449183-C-A | ** | |||||||
7723948-CTTTTTT-C | 7855907-CTTTTTT-C | 25×T | ** | ||||||
7964531-C-T | 8096490-C-T | ** | |||||||
10801664-T-G | ** | ||||||||
10801668-A-C | ** | ||||||||
10935526-CCACTA-C | ** | ||||||||
13485648-A-G | 11329972-A-G | ** | |||||||
3123239-C-A | 3255198-C-A | ** | |||||||
10935557-C-A | ** | ||||||||
6671837-C-A | 6803796-C-A | ** | |||||||
21140107-C-A | 18978221-C-A | ** | |||||||
4103251-C-A | 4235210-C-A | ** | |||||||
15173572-G-A | 13061658-G-A | ** | |||||||
4630695-G-T | 4762654-G-T | ** | |||||||
5171716-C-A | 5303675-C-A | ** | |||||||
19847665-T-A | 17735785-T-A | P5_Prx | ** | ||||||
5869581-C-A | 6001540-C-A | ** | |||||||
11003745-C-CTAAACTCCATTCTGT | ** | ||||||||
11003752-C-CAAGTT | ** | ||||||||
28711545-GGTGTGT-G | 26565398-GGTGTGT-G | 21×GT | ** | ||||||
10839009-C-A | ** | ||||||||
10662781-G-T | ** | ||||||||
10987169-C-CTCCAT | ** | ||||||||
15866859-C-A | 13754979-C-A | ** | |||||||
14459949-C-A | 12339222-C-A | ** | |||||||
10935552-C-G | ** | ||||||||
15402854-G-A | 13290974-G-A | Y132729 | ** | ||||||
17143891-A-AT | 15032011-A-AT | 35×T | ** | ||||||
23364249-C-A | 21202363-C-A | ** | |||||||
56828013-C-CCGTTT | ** | ||||||||
15157567-C-A | 13045654-C-A | ** | |||||||
10935608-A-ATTTAT | ** | ||||||||
10746919-A-T | ** | ||||||||
10801647-G-C | ** | ||||||||
26834532-A-G | 24688385-A-G | P1_g2 | 12×GAAG | ** | |||||
10746960-TTCCATTCAAC-T | ** | ||||||||
17136950-G-T | 15025070-G-T | ** | |||||||
10971086-A-T | ** | ||||||||
19231344-G-TT | 17119464-G-TT | ** | |||||||
7397649-C-A | 7529608-C-A | ** | |||||||
11655384-C-A | DYZ17 | ** | |||||||
3051251-C-A | 3183210-C-A | ** | |||||||
16354883-GA-G | 14243003-GA-G | 9×A | ** | ||||||
7422171-C-A | 7554130-C-A | ** | |||||||
13472137-G-A | 11316461-G-A | ** | |||||||
13472164-G-T | 11316488-G-T | ** | |||||||
10799557-T-A | ** | ||||||||
10799602-T-A | ** | ||||||||
17029093-C-A | 14917213-C-A | ** | |||||||
15445625-C-A | 13333745-C-A | ** | |||||||
21409502-C-A | 19247616-C-A | ** | |||||||
56833313-T-TTGCTC | ** | ||||||||
56833348-T-A | ** | ||||||||
28613042-C-A | 26466895-C-A | ** | |||||||
22167289-C-A | 20005403-C-A | Y108559 | ** | ||||||
8649809-T-A | 8781768-T-A | ** | |||||||
22505913-C-A | 20344027-C-A | DYZ19 | ** | ||||||
15770111-C-A | 13658231-C-A | ** | |||||||
21269323-G-T | 19107437-G-T | ** | |||||||
17548581-C-A | 15436701-C-A | ** | |||||||
7414275-C-T | 7546234-C-T | ** | |||||||
10777811-C-A | ** | ||||||||
16046303-C-A | 13934423-C-A | ** | |||||||
10946786-C-A | ** | ||||||||
22076928-C-A | 19915042-C-A | ** | |||||||
9040108-C-T | 9202499-C-T | F17667 | ** | ||||||
10971033-C-A | FT438624 | ** | |||||||
3435897-C-A | 3567856-C-A | ** | |||||||
9984245-C-A | 10146636-C-A | ** | |||||||
14040906-C-A | 11920200-C-A | ** | |||||||
22236827-A-T | 20074941-A-T | DYZ19 | ** | ||||||
16046308-C-A | 13934428-C-A | ** | |||||||
4244917-C-A | 4376876-C-A | ** | |||||||
22653369-C-A | 20491483-C-A | ** | |||||||
16345082-C-A | 14233202-C-A | Y96036 | ** | ||||||
14517362-C-A | 12405563-C-A | ** | |||||||
10993018-G-T | ** | ||||||||
13199268-C-A | 11043592-C-A | ** | |||||||
15745626-C-A | 13633746-C-A | ** | |||||||
21863145-C-A | 19701259-C-A | ** | |||||||
7295777-C-A | 7427736-C-A | ** | |||||||
13919076-G-T | 11798370-G-T | ** | |||||||
17722556-C-A | 15610676-C-A | ** | |||||||
14324929-A-G | 12204223-A-G | ** | |||||||
13934274-C-A | 11813568-C-A | ** | |||||||
6798743-C-A | 6930702-C-A | ** | |||||||
17760374-C-A | 15648494-C-A | FT282884 | ** | ||||||
18266783-C-A | 16154903-C-A | ** | |||||||
23461065-GA-G | 21299179-GA-G | ** | |||||||
26047571-G-T | 23901424-G-T | P1_Y1 | ** | ||||||
16514561-C-A | 14402681-C-A | FT139155 | ** | ||||||
25945004-T-TC | 23798857-T-TC | P1_Y1 | ** | ||||||
8704246-C-A | 8836205-C-A | ** | |||||||
22602508-C-A | 20440622-C-A | ** | |||||||
24475228-C-A | 22329081-C-A | ** | |||||||
13234385-C-A | 11078709-C-A | ** | |||||||
7824703-C-A | 7956662-C-A | ** | |||||||
18752935-C-A | 16641055-C-A | ** | |||||||
58979477-C-G | 56833330-C-G | ** | |||||||
14352194-C-A | 12231489-C-A | ** | |||||||
18283642-C-A | 16171762-C-A | P6_Prx | ** | ||||||
8737791-C-A | 8869750-C-A | ** | |||||||
4888665-C-A | 5020624-C-A | ** | |||||||
10801642-C-G | ** | ||||||||
14432002-C-A | 12311275-C-A | ** | |||||||
7475116-G-T | 7607075-G-T | IR1_L | ** | ||||||
10658711-G-T | ** | ||||||||
7433581-C-A | 7565540-C-A | ** | |||||||
7656713-C-A | 7788672-C-A | Y84580 | ** | ||||||
14511409-C-A | 12399614-C-A | ** | |||||||
3535917-C-A | 3667876-C-A | ** | |||||||
16777994-C-A | 14666114-C-A | ** | |||||||
23007047-C-A | 20845161-C-A | ** | |||||||
18858653-C-A | 16746773-C-A | ** | |||||||
15430769-C-A | 13318889-C-A | ** | |||||||
4959907-C-A | 5091866-C-A | ** | |||||||
17374802-G-T | 15262922-G-T | ** | |||||||
56840229-G-T | ** | ||||||||
6791879-C-A | 6923838-C-A | ** | |||||||
23435748-C-A | 21273862-C-A | ** | |||||||
6690276-C-A | 6822235-C-A | ** | |||||||
7254579-C-A | 7386538-C-A | ** | |||||||
10971057-C-A | ** | ||||||||
22843705-C-A | 20681819-C-A | ** | |||||||
15790472-C-A | 13678592-C-A | ** | |||||||
14385106-C-A | 12264402-C-A | ** | |||||||
11664777-C-A | DYZ17 | ** | |||||||
11648834-C-A | DYZ17 | ** | |||||||
28627178-C-A | 26481031-C-A | ** | |||||||
23434440-C-A | 21272554-C-A | ** | |||||||
22820403-C-A | 20658517-C-A | ** | |||||||
16430239-A-C | 14318359-A-C | ** | |||||||
14521719-C-A | 12409920-C-A | ** | |||||||
10885127-C-A | ** | ||||||||
15699868-C-A | 13587988-C-A | ** | |||||||
7311754-C-A | 7443713-C-A | ** | |||||||
28756900-C-A | 26610753-C-A | ** | |||||||
2970901-T-A | 3102860-T-A | ** | |||||||
3179008-A-C | 3310967-A-C | ** | |||||||
3249463-C-T | 3381422-C-T | ** | |||||||
3343212-T-C | 3475171-T-C | ** | |||||||
3480708-C-A | 3612667-C-A | ** | |||||||
3627160-G-T | 3759119-G-T | ** | |||||||
3851458-G-T | 3983417-G-T | ** | |||||||
3876970-A-G | 4008929-A-G | ** | |||||||
3965679-C-A | 4097638-C-A | ** | |||||||
3995127-C-A | 4127086-C-A | ** | |||||||
4075695-A-G | 4207654-A-G | ** | |||||||
4233975-C-A | 4365934-C-A | ** | |||||||
4271211-G-A | 4403170-G-A | ** | |||||||
4271334-C-A | 4403293-C-A | ** | |||||||
4293612-C-A | 4425571-C-A | ** | |||||||
4374382-A-G | 4506341-A-G | ** | |||||||
4399154-T-C | 4531113-T-C | ** | |||||||
4412392-T-C | 4544351-T-C | ** | |||||||
4472443-A-G | 4604402-A-G | ** | |||||||
4509975-C-A | 4641934-C-A | ** | |||||||
4700761-C-A | 4832720-C-A | ** | |||||||
4756529-T-A | 4888488-T-A | ** | |||||||
4769545-C-A | 4901504-C-A | ** | |||||||
4872731-A-G | 5004690-A-G | ** | |||||||
4963314-C-T | 5095273-C-T | ** | |||||||
5186346-T-A | 5318305-T-A | ** | |||||||
5288031-G-T | 5419990-G-T | ** | |||||||
5336736-A-T | 5468695-A-T | ** | |||||||
5358685-C-A | 5490644-C-A | ** | |||||||
5829346-C-A | 5961305-C-A | ** | |||||||
6293216-C-A | 6425175-C-A | IR3_Dst | ** | ||||||
6368374-T-G | 6500333-T-G | ** | |||||||
6368405-G-A | 6500364-G-A | ** | |||||||
6630737-C-A | 6762696-C-A | ** | |||||||
6664686-G-T | 6796645-G-T | ** | |||||||
6744539-C-A | 6876498-C-A | ** | |||||||
6828880-A-T | 6960839-A-T | ** | |||||||
6829421-C-A | 6961380-C-A | ** | |||||||
6934508-C-A | 7066467-C-A | ** | |||||||
7012617-A-C | 7144576-A-C | ** | |||||||
7148234-C-A | 7280193-C-A | ** | |||||||
7172569-G-T | 7304528-G-T | ** | |||||||
7187698-T-C | 7319657-T-C | ** | |||||||
7200504-A-G | 7332463-A-G | ** | |||||||
7221217-G-A | 7353176-G-A | ** | |||||||
7237078-C-A | 7369037-C-A | ** | |||||||
7241538-T-C | 7373497-T-C | ** | |||||||
7301492-C-A | 7433451-C-A | ** | |||||||
7333106-C-A | 7465065-C-A | ** | |||||||
7362598-T-G | 7494557-T-G | ** | |||||||
7407058-C-T | 7539017-C-T | ** | |||||||
7407277-C-A | 7539236-C-A | ** | |||||||
7420756-T-A | 7552715-T-A | ** | |||||||
7433661-C-A | 7565620-C-A | ** | |||||||
7621401-C-A | 7753360-C-A | ** | |||||||
8076227-C-A | 8208186-C-A | ** | |||||||
8078742-G-T | 8210701-G-T | ** | |||||||
8326098-G-A | 8458057-G-A | ** | |||||||
8673333-T-A | 8805292-T-A | ** | |||||||
8816976-C-A | 8948935-C-A | ** | |||||||
8913449-C-T | 9045408-C-T | ** | |||||||
9094187-A-T | 9256578-A-T | ** | |||||||
9461675-C-A | 9624066-C-A | ** | |||||||
9936395-C-A | 10098786-C-A | ** | |||||||
9998011-T-C | 10160402-T-C | ** | |||||||
10655990-A-G | ** | ||||||||
10747791-T-C | ** | ||||||||
10792377-C-T | ** | ||||||||
10834656-C-T | ** | ||||||||
10875457-A-G | Y3692 | ** | |||||||
10875702-A-G | ** | ||||||||
10937440-C-A | ** | ||||||||
10963874-A-T | ** | ||||||||
10971059-C-T | ** | ||||||||
10971064-CAAATT-G | ** | ||||||||
10971102-C-A | ** | ||||||||
10971120-C-A | ** | ||||||||
11031453-G-T | A19675 | BY227688 | ** | ||||||
13206228-C-A | 11050552-C-A | ** | |||||||
13224506-C-A | 11068830-C-A | ** | |||||||
13231657-T-C | 11075981-T-C | ** | |||||||
13255275-T-G | 11099599-T-G | ** | |||||||
13295924-C-A | 11140248-C-A | ** | |||||||
13297045-A-G | 11141369-A-G | ** | |||||||
13320423-G-A | 11164747-G-A | ** | |||||||
13326125-C-A | 11170449-C-A | ** | |||||||
13433752-C-A | 11278076-C-A | ** | |||||||
13463610-C-A | 11307934-C-A | ** | |||||||
13479662-G-T | 11323986-G-T | ** | |||||||
13495747-A-T | 11340071-A-T | ** | |||||||
13571576-C-A | 11415900-C-A | ** | |||||||
13611921-C-G | 11456245-C-G | ** | |||||||
11646976-G-A | DYZ17 | ** | |||||||
11669489-G-T | DYZ17 | ** | |||||||
13821863-G-C | 11701157-G-C | DYZ17 | ** | ||||||
13887535-T-C | 11766829-T-C | ** | |||||||
13893471-A-T | 11772765-A-T | ** | |||||||
13937409-A-G | 11816703-A-G | ** | |||||||
14032549-G-A | 11911843-G-A | ** | |||||||
14043808-A-C | 11923102-A-C | ** | |||||||
14046534-C-A | 11925828-C-A | ** | |||||||
14118330-GC-G | 11997624-GC-G | ** | |||||||
14241284-C-A | 12120578-C-A | ** | |||||||
14278526-C-A | 12157820-C-A | ** | |||||||
14387547-G-T | 12266843-G-T | ** | |||||||
14391758-C-A | 12271054-C-A | ** | |||||||
14392854-C-A | 12272150-C-A | ** | |||||||
14431996-C-A | 12311269-C-A | ** | |||||||
14449777-A-G | 12329050-A-G | ** | |||||||
14490952-C-A | 12370221-C-A | ** | |||||||
14501998-T-C | 12390203-T-C | ** | |||||||
14568318-C-T | 12456518-C-T | ** | |||||||
14622138-G-C | 12510336-G-C | ** | |||||||
14622172-C-A | 12510370-C-A | ** | |||||||
14698341-C-A | 12586407-C-A | ** | |||||||
14761241-C-A | 12649310-C-A | ** | |||||||
14761387-C-A | 12649456-C-A | ** | |||||||
14785066-T-G | 12673136-T-G | ** | |||||||
14886305-C-A | 12774371-C-A | ** | |||||||
14931957-C-A | 12820022-C-A | ** | |||||||
15081250-G-T | 12969340-G-T | ** | |||||||
15141877-C-A | 13029964-C-A | ** | |||||||
15158769-C-A | 13046855-C-A | ** | |||||||
15215931-C-A | 13104017-C-A | ** | |||||||
15365966-C-A | 13254086-C-A | ** | |||||||
15386309-C-A | 13274429-C-A | ** | |||||||
15496969-C-A | 13385089-C-A | ** | |||||||
15647843-G-T | 13535963-G-T | ** | |||||||
15650681-C-T | 13538801-C-T | ** | |||||||
15685188-C-A | 13573308-C-A | Y94432 | ** | ||||||
15697045-A-G | 13585165-A-G | ** | |||||||
15746939-C-A | 13635059-C-A | ** | |||||||
15786059-G-A | 13674179-G-A | ** | |||||||
15823883-T-C | 13712003-T-C | ** | |||||||
15870641-A-T | 13758761-A-T | ** | |||||||
15870740-C-A | 13758860-C-A | ** | |||||||
15904086-G-A | 13792206-G-A | ** | |||||||
15997347-G-A | 13885467-G-A | ** | |||||||
16063441-C-A | 13951561-C-A | ** | |||||||
16073027-A-G | 13961147-A-G | ** | |||||||
16279529-A-T | 14167649-A-T | ** | |||||||
16342544-A-G | 14230664-A-G | ** | |||||||
16382942-C-A | 14271062-C-A | ** | |||||||
16382944-A-G | 14271064-A-G | ** | |||||||
16406930-C-A | 14295050-C-A | ** | |||||||
16451792-C-A | 14339912-C-A | ** | |||||||
16480003-G-C | 14368123-G-C | ** | |||||||
16553863-C-T | 14441983-C-T | ** | |||||||
16612588-C-CAT | 14500708-C-CAT | ** | |||||||
16865293-A-G | 14753413-A-G | ** | |||||||
16883673-C-A | 14771793-C-A | ** | |||||||
16952706-C-A | 14840826-C-A | ** | |||||||
17196344-C-A | 15084464-C-A | ** | |||||||
17318907-C-A | 15207027-C-A | ** | |||||||
17374620-C-A | 15262740-C-A | ** | |||||||
17379389-C-G | 15267509-C-G | ** | |||||||
17456013-C-A | 15344133-C-A | ** | |||||||
17588471-G-T | 15476591-G-T | ** | |||||||
17605706-C-A | 15493826-C-A | FT403698 | ** | ||||||
17653999-C-A | 15542119-C-A | ** | |||||||
17672998-C-A | 15561118-C-A | ** | |||||||
17722547-C-A | 15610667-C-A | ** | |||||||
17799019-C-A | 15687139-C-A | ** | |||||||
17876348-A-C | 15764468-A-C | ** | |||||||
17876352-T-C | 15764472-T-C | ** | |||||||
17923451-A-T | 15811571-A-T | ** | |||||||
18009652-A-G | 15897772-A-G | P7_Dst | 8×G | ** | |||||
18009660-GA-G | 15897780-GA-G | P7_Dst | ** | ||||||
18035966-C-A | 15924086-C-A | ** | |||||||
18194261-A-T | 16082381-A-T | FT240202 | ** | ||||||
18195967-A-G | 16084087-A-G | ** | |||||||
18201234-T-C | 16089354-T-C | ** | |||||||
18443402-G-T | 16331522-G-T | P6_Dst | ** | ||||||
18564985-C-A | 16453105-C-A | ** | |||||||
18707081-C-A | 16595201-C-A | ** | |||||||
18766657-C-T | 16654777-C-T | ** | |||||||
18853258-C-A | 16741378-C-A | ** | |||||||
19275329-T-C | 17163449-T-C | ** | |||||||
19426946-C-A | 17315066-C-A | ** | |||||||
19460617-C-A | 17348737-C-A | ** | |||||||
19475186-T-C | 17363306-T-C | ** | |||||||
19881899-A-G | 17770019-A-G | P5_Prx | ** | ||||||
20275385-A-AC | 18113499-A-AC | P5_Dst | ** | ||||||
20631973-C-T | 18470087-C-T | P4_Prx | ** | ||||||
20723996-T-A | 18562110-T-A | P4_Prx | ** | ||||||
21100524-C-A | 18938638-C-A | ** | |||||||
21144617-C-A | 18982731-C-A | ** | |||||||
21350188-A-G | 19188302-A-G | ** | |||||||
21366098-C-A | 19204212-C-A | ** | |||||||
21394264-C-A | 19232378-C-A | ** | |||||||
21411717-GCAAAAAAAAAAAA-G | 19249831-GCAAAAAAAAAAAA-G | ** | |||||||
21457891-A-C | 19296005-A-C | ** | |||||||
21462479-C-T | 19300593-C-T | ** | |||||||
21488863-T-C | 19326977-T-C | ** | |||||||
21563011-C-A | 19401125-C-A | ** | |||||||
21746461-C-A | 19584575-C-A | ** | |||||||
21813725-GCT-G | 19651839-GCT-G | ** | |||||||
22011600-T-C | 19849714-T-C | ** | |||||||
22080474-C-A | 19918588-C-A | ** | |||||||
22352973-G-C | 20191087-G-C | DYZ19 | ** | ||||||
22871623-C-A | 20709737-C-A | ** | |||||||
22962131-C-A | 20800245-C-A | ** | |||||||
23186076-C-A | 21024190-C-A | ** | |||||||
23281280-T-A | 21119394-T-A | ** | |||||||
23345868-C-A | 21183982-C-A | ** | |||||||
23461032-A-G | 21299146-A-G | ** | |||||||
23579425-T-G | 21417539-T-G | ** | |||||||
23876187-A-G | 21714301-A-G | ** | |||||||
24331336-G-T | 22185189-G-T | P3_t1 | ** | ||||||
24466079-C-T | 22319932-C-T | ** | |||||||
24660553-G-T | 22514406-G-T | P3_b2 | ** | ||||||
25088314-C-A | 22942167-C-A | g1 | ** | ||||||
27801245-G-GA | 25655098-G-GA | P1_Y2 | 8×A | ** | |||||
27808664-C-A | 25662517-C-A | P1_Y2 | ** | ||||||
28159146-G-T | 26012999-G-T | P1_b4 | ** | ||||||
28543268-G-A | 26397121-G-A | ** | |||||||
28600641-G-A | 26454494-G-A | ** | |||||||
28645844-C-T | 26499697-C-T | ** | |||||||
28645971-G-T | 26499824-G-T | ** | |||||||
28689296-C-A | 26543149-C-A | ** | |||||||
28714246-T-C | 26568099-T-C | ** | |||||||
28742600-C-T | 26596453-C-T | ** | |||||||
28771471-C-A | 26625324-C-A | ** | |||||||
28773091-C-A | 26626944-C-A | ** | |||||||
56833034-C-A | ** | ||||||||
13705124-A-G | 11549448-A-G | DYZ17 | *** | ||||||
13467768-A-G | 11312092-A-G | *** | |||||||
13686897-C-A | 11531221-C-A | DYZ17 | *** | ||||||
58978626-T-C | 56832479-T-C | *** | |||||||
21556380-A-G | 19394494-A-G | *** | |||||||
24229307-C-T | 22083160-C-T | P3_b1 | *** | ||||||
23273183-G-GA | 21111297-G-GA | 10×A | *** | ||||||
18984861-G-GA | 16872981-G-GA | 10×A | *** | ||||||
19226188-AATAGATAG-A,AATAGATAA | 17114308-AATAGATAG-A,AATAGATAA | 14×ATAG | *** | ||||||
21407291-GT-G | 19245405-GT-G | 11×T | *** | ||||||
28784476-C-A | 26638329-C-A | *** | |||||||
17865075-AT-A | 15753195-AT-A | 10×T | *** | ||||||
13726100-C-T | 11570424-C-T | DYZ17 | *** | ||||||
18608589-CAA-C | 16496709-CAA-C | 13×A | *** | ||||||
13489616-CC-C,CCCCGTCCT | 11333940-CC-C,CCCCGTCCT | *** | |||||||
10999869-C-T | BY84117 | *** | |||||||
11643652-A-T | DYZ17 | *** | |||||||
18401347-C-A | 16289467-C-A | P6_Gap | *** | ||||||
10760378-T-A | *** | ||||||||
10760380-C-A | *** | ||||||||
14953640-C-A | 12841714-C-A | *** | |||||||
7623439-TAA-T,TA | 7755398-TAA-T,TA | 14×A | *** | ||||||
7038725-C-A | 7170684-C-A | *** | |||||||
10987858-C-A | *** | ||||||||
3436171-CT-C,CTT | 3568130-CT-C,CTT | 15×T | *** | ||||||
22147791-TTTCTTTTCTTTTCTTTTCTT-T,TTTCTTTTCTTTTCTCTTCTC | 19985905-TTTCTTTTCTTTTCTTTTCTT-T,TTTCTTTTCTTTTCTCTTCTC | *** | |||||||
13681025-C-A | 11525349-C-A | DYZ17 | *** | ||||||
21292579-TAAA-T | 19130693-TAAA-T | 15×A | *** | ||||||
56833215-C-A | *** | ||||||||
13478092-G-A | 11322416-G-A | *** | |||||||
28591349-C-A | 26445202-C-A | *** | |||||||
3093651-C-A | 3225610-C-A | *** | |||||||
14181495-G-T | 12060789-G-T | *** | |||||||
23272285-TTTTCTTTC-T,TTTTC | 21110399-TTTTCTTTC-T,TTTTC | 16×TTTC | *** | ||||||
8514331-C-A | 8646290-C-A | *** | |||||||
7247651-C-A | 7379610-C-A | *** | |||||||
2979306-TTTTTT-G,TTTTT | 3111265-TTTTTT-G,TTTTT | *** | |||||||
5861532-C-A | 5993491-C-A | *** | |||||||
6368838-G-A | 6500797-G-A | *** | |||||||
6930140-C-A | 7062099-C-A | *** | |||||||
6966657-C-A | 7098616-C-A | *** | |||||||
7018082-T-G | 7150041-T-G | *** | |||||||
7037981-C-A | 7169940-C-A | *** | |||||||
7208676-C-A | 7340635-C-A | *** | |||||||
7277780-C-A | 7409739-C-A | *** | |||||||
7426200-C-A | 7558159-C-A | *** | |||||||
8182205-CAAAAAAA-C | 8314164-CAAAAAAA-C | 18×A | *** | ||||||
8270129-A-G | 8402088-A-G | *** | |||||||
8465911-A-T | 8597870-A-T | *** | |||||||
8535204-GTTTTTTT-G | 8667163-GTTTTTTT-G | 19×T | *** | ||||||
8736403-T-C | 8868362-T-C | *** | |||||||
8890953-C-A | 9022912-C-A | *** | |||||||
9030373-G-A | 9192764-G-A | *** | |||||||
9130008-C-A | 9292399-C-A | *** | |||||||
9959340-C-T | 10121731-C-T | *** | |||||||
10034530-C-A | 10196921-C-A | *** | |||||||
10647860-G-T | *** | ||||||||
10987850-A-T | *** | ||||||||
13481007-C-A | 11325331-C-A | *** | |||||||
11643786-A-ATTGAG | DYZ17 | *** | |||||||
14175647-C-A | 12054941-C-A | *** | |||||||
14247664-C-A | 12126958-C-A | *** | |||||||
14467340-G-T | 12346609-G-T | *** | |||||||
14604600-TTTTTTTTT-T,TTTTTTTTTC | 12492802-TTTTTTTTT-T,TTTTTTTTTC | *** | |||||||
14724287-C-A | 12612355-C-A | *** | |||||||
15078212-G-A | 12966302-G-A | *** | |||||||
15136179-G-A | 13024266-G-A | *** | |||||||
15271056-A-G | 13159145-A-G | *** | |||||||
16583436-G-T | 14471556-G-T | *** | |||||||
16779307-A-G | 14667427-A-G | *** | |||||||
16822356-T-G | 14710476-T-G | *** | |||||||
17386651-CTA-C | 15274771-CTA-C | *** | |||||||
17467115-G-T | 15355235-G-T | *** | |||||||
18661724-C-A | 16549844-C-A | *** | |||||||
19001344-C-A | 16889464-C-A | *** | |||||||
21166768-C-A | 19004882-C-A | *** | |||||||
21717756-C-A | 19555870-C-A | *** | |||||||
21972444-C-A | 19810558-C-A | Y14429 ZS6051 | *** | ||||||
22727362-C-A | 20565476-C-A | *** | |||||||
23188158-G-T | 21026272-G-T | *** | |||||||
23459548-C-A | 21297662-C-A | *** | |||||||
28657099-C-A | 26510952-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.