Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A212 > A6518

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
166439
BigY2
166439
7230661-G-A 7362620-G-A YYA*
13449139-A-G 11293463-A-G A*
22284085-G-A 20122199-G-A DYZ19 ***A*
20629832-G-GT 18467946-G-GT P4_Prx 9×TA*
25890542-T-TA 23744395-T-TA P1_Y1 9×AA*
16851019-G-A 14739139-G-A Y97483 YY++
16365715-C-T 14253835-C-T BY107258 YY++
21797894-C-A 19636008-C-A Y107516 YY++
2872778-G-C 3004737-G-C BY56968 YY++
7091777-C-G 7223736-C-G BY63292 YY++
19229474-C-T 17117594-C-T BY127475 YY++
7230843-T-C 7362802-T-C YY****
17319990-A-G 15208110-A-G YY*
7230679-T-C 7362638-T-C YY****
7096860-C-T 7228819-C-T YY****
7096829-C-T 7228788-C-T V144 YY****
13315591-T-C 11159915-T-C **
13253601-C-A 11097925-C-A **
13394858-T-A 11239182-T-A **
13208047-C-A 11052371-C-A **
13196485-C-A 11040809-C-A **
13486633-G-A 11330957-G-A **
13394878-C-A 11239202-C-A **
13434161-T-C 11278485-T-C **
11021678-T-G **
13488813-C-A 11333137-C-A **
13542224-TGGG-T 11386548-TGGG-T **
13598489-T-C 11442813-T-C **
13608280-C-A 11452604-C-A **
13634388-C-A 11478712-C-A **
13639917-G-A 11484241-G-A **
13195979-A-G 11040303-A-G **
10951788-T-G **
11020900-C-T **
10932641-G-A **
10900694-C-T **
10900695-CA-C **
10900698-T-TTTTTGTTC **
10912408-T-C **
10925966-C-CACTAT **
10926156-C-A **
10943104-T-C **
11019534-A-G **
10943111-C-A **
10943113-A-T **
11649486-T-C **
10951923-C-T **
10951982-T-C **
10951997-T-A **
10997635-G-T **
11646209-A-T **
13910096-G-C 11789390-G-C **
11653572-C-A **
14431538-A-G 12310811-A-G **
14361802-C-A 12241097-C-A **
14372040-T-A 12251336-T-A **
14384269-T-G 12263565-T-G **
14384304-G-C 12263600-G-C **
14430389-A-G 12309662-A-G **
14431372-C-A 12310645-C-A **
14448280-T-A 12327553-T-A **
14274156-C-G 12153450-C-G **
14517235-A-G 12405436-A-G **
14518500-T-A 12406701-T-A **
14560651-C-T 12448852-C-T **
14564030-C-A 12452230-C-A **
14571089-C-G 12459289-C-G **
14623523-A-G 12511721-A-G **
14696964-G-A 12585030-G-A **
14281103-C-G 12160397-C-G **
14247465-C-A 12126759-C-A **
11675354-A-G **
13926158-C-A 11805452-C-A **
11675446-G-C **
11675509-A-C **
11676614-C-A **
13809451-A-G 11688745-A-G **
13859237-A-T 11738531-A-T **
10900667-C-G **
13938714-AG-A 11818008-AG-A **
14219711-T-G 12099005-T-G **
13993824-C-A 11873118-C-A **
14066998-T-C 11946292-T-C **
14097942-G-A 11977236-G-A **
14142304-T-C 12021598-T-C **
14147890-G-A 12027184-G-A **
14147913-T-C 12027207-T-C **
14180670-C-A 12059964-C-A **
10900691-A-ATTTG **
10825259-C-G **
10900665-C-G **
7248210-G-T 7380169-G-T **
7101047-C-G 7233006-C-G **
7152736-G-A 7284695-G-A **
7228926-C-A 7360885-C-A **
7238078-G-C 7370037-G-C **
7238093-T-C 7370052-T-C **
7243503-C-A 7375462-C-A **
7322979-C-A 7454938-C-A **
6892396-C-A 7024355-C-A **
7338030-TA-T 7469989-TA-T **
7633091-T-C 7765050-T-C **
7704977-G-A 7836936-G-A **
7755205-A-G 7887164-A-G **
8720464-T-A 8852423-T-A **
8736729-C-A 8868688-C-A **
8785642-G-C 8917601-G-C **
6923113-C-A 7055072-C-A **
6731113-C-A 6863072-C-A **
8983362-TG-T 9145753-TG-T **
6040289-A-C 6172248-A-C **
5669201-T-C 5801160-T-C **
5709943-A-G 5841902-A-G **
5785162-A-G 5917121-A-G **
5842869-T-C 5974828-T-C **
5843223-C-A 5975182-C-A **
5927452-G-T 6059411-G-T **
6110117-A-C 6242076-A-C **
6626848-C-A 6758807-C-A **
6110143-T-C 6242102-T-C **
6252251-C-T 6384210-C-T IR3_Dst **
6384534-T-A 6516493-T-A **
6460835-C-A 6592794-C-A **
6478440-C-A 6610399-C-A **
6490761-T-A 6622720-T-A **
6621505-G-C 6753464-G-C **
8806929-C-A 8938888-C-A **
9047150-C-T 9209541-C-T **
10877038-C-A **
10808645-C-A **
10759347-C-T **
10759350-A-C **
10782613-A-C **
10801734-T-TTCGTG **
10802423-T-C **
10808594-T-C **
10825246-G-GGATGA **
10759336-T-C **
10825253-T-G **
14735337-G-A 12623405-G-A **
10825280-C-CCCTGCACTCACGTTG **
10825316-A-T **
10829042-C-A **
10832694-C-A **
10866014-T-C **
10759343-C-T **
10759323-C-A **
9048030-C-T 9210421-C-T **
9799162-A-C 9961553-A-C **
9172938-C-A 9335329-C-A **
9460975-T-C 9623366-T-C **
9462206-G-T 9624597-G-T **
9482452-C-A 9644843-C-A **
9509648-G-A 9672039-G-A **
9514895-C-A 9677286-C-A **
9799250-G-T 9961641-G-T **
10034378-C-A 10196769-C-A **
9832604-C-T 9994995-C-T Z7590 FGC3321 **
9832609-T-C 9995000-T-C **
9899652-G-C 10062043-G-C **
9927314-C-A 10089705-C-A **
9963414-C-A 10125805-C-A **
10018179-G-A 10180570-G-A **
10031799-C-G 10194190-C-G **
14712054-C-A 12600121-C-A **
14798449-A-G 12686520-A-G **
14798398-T-G 12686469-T-G **
20690178-C-CTT 18528292-C-CTT P4_Prx 12×T**
19892870-T-TA 17780990-T-TA P5_Prx **
19949231-A-C 17837351-A-C P5_Prx **
19949294-A-C 17837414-A-C P5_Prx **
19949298-C-A 17837418-C-A P5_Prx **
20483327-T-TC 18321441-T-TC P5_Dst **
20631072-A-AC 18469186-A-AC P4_Prx **
20950470-G-A 18788584-G-A P4_Dst **
19831732-C-T 17719852-C-T P5_Prx **
21042909-C-G 18881023-C-G **
21141100-C-A 18979214-C-A **
21368516-T-A 19206630-T-A **
21368545-C-G 19206659-C-G **
21368564-C-G 19206678-C-G **
21427711-C-A 19265825-C-A **
21503102-T-A 19341216-T-A **
19892850-A-C 17780970-A-C P5_Prx **
19560508-G-T 17448628-G-T **
21824486-G-T 19662600-G-T **
18462607-A-ACG 16350727-A-ACG P6_Dst **
18158434-C-A 16046554-C-A **
18185962-C-T 16074082-C-T **
18226400-A-G 16114520-A-G **
18228207-C-A 16116327-C-A **
18271014-C-G 16159134-C-G **
18390125-G-C 16278245-G-C P6_Gap **
18573616-C-A 16461736-C-A **
19544326-C-A 17432446-C-A **
18753097-G-T 16641217-G-T **
18848666-G-T 16736786-G-T **
18855680-C-A 16743800-C-A **
19052270-C-T 16940390-C-T **
19071017-C-A 16959137-C-A **
19145553-T-C 17033673-T-C **
19304619-C-A 17192739-C-A **
21635277-C-A 19473391-C-A **
22044190-C-A 19882304-C-A **
18151979-C-A 16040099-C-A **
26260708-A-C 24114561-A-C P1_Y1 **
23818903-T-G 21657017-T-G **
23848253-C-T 21686367-C-T **
21754170-A-G **
23953031-C-A 21806884-C-A **
24275021-C-A 22128874-C-A P3_b1 **
26260647-T-C 24114500-T-C P1_Y1 **
26626435-G-T 24480288-G-T P1_g2 **
23447441-A-T 21285555-A-T **
28159339-G-T 26013192-G-T P1_b4 **
28460922-C-T 26314775-C-T **
28530782-C-A 26384635-C-A **
28534802-G-T 26388655-G-T **
28634887-C-A 26488740-C-A **
28650683-C-A 26504536-C-A **
28743207-A-C 26597060-A-C **
23449118-G-A 21287232-G-A **
23447424-C-T 21285538-C-T **
22056191-GAC-G 19894305-GAC-G **
22703573-G-A 20541687-G-A **
22060394-C-G 19898508-C-G **
22353433-G-T 20191547-G-T DYZ19 **
22483918-A-C 20322032-A-C DYZ19 **
22485005-C-A 20323119-C-A DYZ19 **
22551281-G-A 20389395-G-A **
22593105-T-A 20431219-T-A **
22950327-G-A 20788441-G-A **
23441346-T-A 21279460-T-A **
23128680-C-A 20966794-C-A **
23144095-T-G 20982209-T-G **
23206811-C-A 21044925-C-A **
23260758-A-G 21098872-A-G **
23261552-T-C 21099666-T-C **
23355215-A-T 21193329-A-T **
23360604-C-A 21198718-C-A **
18153677-A-G 16041797-A-G **
18086063-T-A 15974183-T-A **
14798399-A-G 12686470-A-G **
15823886-C-A 13712006-C-A **
15769250-C-G 13657370-C-G **
15769254-CTAA-C 13657374-CTAA-C **
15769260-G-GTGT 13657380-G-GTGT **
15769271-C-T 13657391-C-T **
15769284-A-G 13657404-A-G **
15788791-C-G 13676911-C-G **
15844530-C-A 13732650-C-A **
15742945-C-A 13631065-C-A **
15916376-C-A 13804496-C-A **
15917522-C-A 13805642-C-A **
15918731-C-A 13806851-C-A **
16020993-T-C 13909113-T-C **
16029338-G-T 13917458-G-T **
16029398-G-T 13917518-G-T **
16029577-C-T 13917697-C-T **
15769248-T-G 13657368-T-G **
15687767-T-A 13575887-T-A **
16090364-T-G 13978484-T-G **
14962126-C-A 12850201-C-A **
14798409-G-T 12686480-G-T **
14798420-G-C 12686491-G-C **
14798423-T-G 12686494-T-G **
14798425-A-G 12686496-A-G **
14798435-C-T 12686506-C-T **
5490149-G-T 5622108-G-T **
14962226-C-A 12850301-C-A **
15682851-T-C 13570971-T-C **
15172669-CACTTATGA-C 13060755-CACTTATGA-C **
15369102-T-A 13257222-T-A **
15369175-C-A 13257295-C-A **
15386352-A-C 13274472-A-C **
15427430-G-A 13315550-G-A **
15556776-A-G 13444896-A-G **
15556794-T-C 13444914-T-C **
16030321-A-C 13918441-A-C **
16353632-G-T 14241752-G-T **
18053570-A-C 15941690-A-C **
17567707-C-A 15455827-C-A **
17380015-C-A 15268135-C-A **
17397225-C-A 15285345-C-A **
17425075-A-T 15313195-A-T **
17474854-T-A 15362974-T-A **
17474861-T-G 15362981-T-G **
17490047-A-C 15378167-A-C **
17588658-T-C 15476778-T-C **
17306596-C-A 15194716-C-A **
17617063-G-C 15505183-G-C **
17622601-A-G 15510721-A-G **
17629479-C-A 15517599-C-A **
17730461-A-C 15618581-A-C **
17883719-C-A 15771839-C-A **
17964010-C-A 15852130-C-A **
18022319-G-C 15910439-G-C **
17378732-C-A 15266852-C-A **
17276352-T-G 15164472-T-G **
16410246-C-A 14298366-C-A **
16515906-C-T 14404026-C-T **
16412387-C-A 14300507-C-A **
16430124-A-C 14318244-A-C **
16445802-A-T 14333922-A-T **
16492983-C-T 14381103-C-T **
16493125-A-G 14381245-A-G **
16501802-G-A 14389922-G-A **
16576906-C-T 14465026-C-T **
17231481-TG-T 15119601-TG-T **
16682963-C-A 14571083-C-A **
16719984-T-A 14608104-T-A **
16720297-A-C 14608417-A-C **
16826679-T-G 14714799-T-G **
16865346-T-C 14753466-T-C **
16952841-C-A 14840961-C-A **
17159682-T-C 15047802-T-C **
5562908-C-T 5694867-C-T **
5455417-C-A 5587376-C-A **
56829896-C-A **
15288161-T-C 13176260-T-C **
27872566-A-C 25726419-A-C P1_Y2 **
10629693-A-T **
7029730-C-A 7161689-C-A **
4241784-C-A 4373743-C-A **
2854827-C-A 2986786-C-A **
16605043-C-A 14493163-C-A **
16904655-T-A 14792775-T-A **
23818052-C-CTAA 21656166-C-CTAA 8×TAA**
13488782-G-A 11333106-G-A **
17499862-C-A 15387982-C-A **
17128526-T-C 15016646-T-C **
15288165-C-T 13176264-C-T **
15288162-G-A 13176261-G-A **
15288157-A-G 13176256-A-G **
56823004-G-T **
15288136-C-T 13176235-C-T **
7253685-C-A 7385644-C-A **
23997542-C-A 21851395-C-A **
3178992-C-A 3310951-C-A **
15132020-C-A 13020107-C-A **
10673880-CTCCATTCCAT-C **
18454949-TTCTC-T 16343069-TTCTC-T P6_Dst 8×TC**
10961381-C-A **
6368908-G-T 6500867-G-T **
14458239-C-A 12337512-C-A **
14696946-T-C 12585012-T-C **
13422841-C-A 11267165-C-A **
9040287-G-A 9202678-G-A **
22739623-G-A 20577737-G-A **
27982176-AT-A 25836029-AT-A P1_Y2 **
16179584-C-A 14067704-C-A **
23837609-G-T 21675723-G-T **
19463634-C-A 17351754-C-A **
17474838-C-T 15362958-C-T **
7622042-T-C 7754001-T-C **
16577588-C-A 14465708-C-A **
14147879-A-G 12027173-A-G **
14147857-T-C 12027151-T-C **
9991148-C-A 10153539-C-A **
20404424-T-A 18242538-T-A P5_Dst **
15073188-C-A 12961278-C-A **
10657410-C-A **
27497075-T-TC 25350928-T-TC P1_Y2 **
16968207-C-A 14856327-C-A **
10691249-CTCCAA-C **
3388532-C-A 3520491-C-A **
15305703-C-A 13193802-C-A **
16309295-T-G 14197415-T-G **
19604803-C-A 17492923-C-A P5_Prx **
16071320-A-T 13959440-A-T **
11016206-C-A **
4665921-C-A 4797880-C-A **
10988582-C-A **
13488844-G-T 11333168-G-T **
17042942-C-A 14931062-C-A **
10801734-T-C **
2814921-C-A 2946880-C-A **
5336743-G-T 5468702-G-T **
18154296-C-A 16042416-C-A **
16952830-C-A 14840950-C-A **
22880678-C-A 20718792-C-A **
10887264-G-T **
10900672-C-T **
4898582-C-A 5030541-C-A **
5246691-C-A 5378650-C-A **
13706104-G-A 11550428-G-A BY29527 **
16783409-C-A 14671529-C-A **
8398963-C-A 8530922-C-A **
10691411-C-T **
10691400-T-C **
10691397-C-T **
27733743-AG-A 25587596-AG-A P1_Y2 **
13828277-G-A 11707571-G-A **
15658086-G-GTA 13546206-G-GTA **
10987893-C-G **
13464-T-A **
13472234-G-A 11316558-G-A **
15084466-CTT-C 12972556-CTT-C 19×T**
9943791-C-A 10106182-C-A **
10670910-CCATTT-C **
10921793-C-A **
10670909-C-T **
17569226-GAA-G 15457346-GAA-G 25×A**
5316966-C-A 5448925-C-A **
14844388-C-A 12732454-C-A **
19831675-C-G 17719795-C-G P5_Prx **
3229129-T-A 3361088-T-A **
3367169-A-T 3499128-A-T 10×T**
22229619-G-T 20067733-G-T A3926 DYZ19 **
22229618-T-C 20067732-T-C DYZ19 **
5021993-G-A 5153952-G-A **
10670928-A-C **
7541316-C-A 7673275-C-A **
56836609-T-A **
14463291-CTTTT-C 12342564-CTTTT-C 16×T**
13472214-C-A 11316538-C-A **
28622158-AAAAT-A 26476011-AAAAT-A 5×AAAT**
15556765-C-T 13444885-C-T **
17402501-CTT-C 15290621-CTT-C 14×T**
28720845-C-A 26574698-C-A **
10691377-C-CCT **
10691373-ATT-A **
5860975-C-A 5992934-C-A **
4547665-C-A 4679624-C-A **
13703434-T-A 11547758-T-A **
7363155-T-A 7495114-T-A **
9962714-G-A 10125105-G-A **
19692990-T-TC 17581110-T-TC P5_Prx **
56742696-G-T **
10925947-A-G **
10925930-C-T **
19246986-C-A 17135106-C-A **
13229774-C-A 11074098-C-A **
22258168-G-A 20096282-G-A DYZ19 **
7347796-GA-G 7479755-GA-G **
7236479-C-A 7368438-C-A **
10828705-C-CG **
15927780-C-A 13815900-C-A **
11022110-TTACTC-T **
11022073-CTCCTT-C **
14077910-C-A 11957204-C-A **
10876012-T-A **
10693888-C-A **
8016970-G-T 8148929-G-T **
9983163-C-A 10145554-C-A **
27583288-G-T 25437141-G-T P1_Y2 **
13308659-C-A 11152983-C-A **
10828777-T-A **
3592536-C-A 3724495-C-A **
14147884-G-A 12027178-G-A **
14696963-T-C 12585029-T-C **
3175988-C-A 3307947-C-A **
3995284-T-C 4127243-T-C **
3967089-T-C 4099048-T-C **
3877331-G-T 4009290-G-T **
3835042-A-T 3967001-A-T **
3804356-T-G 3936315-T-G **
3641263-C-G 3773222-C-G **
3551903-G-T 3683862-G-T **
3491684-A-T 3623643-A-T **
3410337-A-G 3542296-A-G **
3405173-C-A 3537132-C-A **
3366540-T-G 3498499-T-G **
3275536-G-T 3407495-G-T **
3251996-GT-G 3383955-GT-G **
3122307-A-G 3254266-A-G **
4124245-C-A 4256204-C-A **
3111608-C-A 3243567-C-A **
3045676-C-A 3177635-C-A **
2970881-A-G 3102840-A-G **
2960450-C-A 3092409-C-A **
2954249-G-T 3086208-G-T **
2926460-G-A 3058419-G-A **
2915358-ATATGTCC-A 3047317-ATATGTCC-A **
2670014-T-C 2801973-T-C **
16157739-GAAAAGA-G 14045859-GAAAAGA-G P8_Dst **
10993177-C-A **
18389280-C-A 16277400-C-A P6_Gap **
4388767-G-T 4520726-G-T **
10825257-T-C **
4070121-A-G 4202080-A-G **
4146659-T-A 4278618-T-A **
10964647-C-A **
4700136-A-G 4832095-A-G **
5335291-A-G 5467250-A-G **
5302834-C-A 5434793-C-A **
5293864-C-A 5425823-C-A **
5185387-C-G 5317346-C-G **
5184303-G-C 5316262-G-C **
5073819-A-G 5205778-A-G **
5048982-G-T 5180941-G-T **
5011786-C-A 5143745-C-A **
4964764-G-TT 5096723-G-TT **
4939600-T-G 5071559-T-G **
4939594-T-G 5071553-T-G **
4939569-C-G 5071528-C-G **
4700285-C-A 4832244-C-A **
4684191-A-T 4816150-A-T **
13703433-A-C 11547757-A-C BY25121 **
4648494-G-T 4780453-G-T **
4552614-T-C 4684573-T-C **
4541090-C-A 4673049-C-A **
4516124-G-T 4648083-G-T **
4439402-C-T 4571361-C-T **
4425920-G-C 4557879-G-C **
4315810-C-A 4447769-C-A **
4267717-G-A 4399676-G-A **
4218113-T-G 4350072-T-G **
4195895-G-T 4327854-G-T **
4190750-T-G 4322709-T-G **
4160441-G-C 4292400-G-C **
4154510-C-A 4286469-C-A **
3995350-C-A 4127309-C-A **
7664404-C-A 7796363-C-A **
9509568-C-A 9671959-C-A **
18390123-T-G 16278243-T-G P6_Gap **
16445811-G-A 14333931-G-A **
7141886-C-A 7273845-C-A **
10032311-G-T 10194702-G-T **
8848236-C-A 8980195-C-A **
26059256-A-G 23913109-A-G P1_Y1 **
21713465-T-C 19551579-T-C **
19544587-T-C 17432707-T-C **
9639074-G-T 9801465-G-T IR3_Prx **
3628012-A-T 3759971-A-T 14×T**
23447418-T-C 21285532-T-C **
13317315-C-A 11161639-C-A **
13705804-G-GT 11550128-G-GT **
6090286-C-CAA 6222245-C-CAA 12×A**
13488811-G-A 11333135-G-A **
4566929-C-A 4698888-C-A **
13952626-C-A 11831920-C-A **
15699886-C-A 13588006-C-A **
14988897-C-A 12876963-C-A **
21042981-C-A 18881095-C-A **
23773548-G-T 21611662-G-T **
8181213-TG-T 8313172-TG-T **
21182395-GTC-G 19020509-GTC-G **
17006584-C-A 14894704-C-A **
7241914-TTTTA-T 7373873-TTTTA-T 6×TTTA**
13705821-A-G 11550145-A-G **
14147870-A-G 12027164-A-G A19879 **
17474835-A-G 15362955-A-G **
14867119-A-G 12755189-A-G **
7182077-C-A 7314036-C-A **
10875995-T-G **
16491445-C-A 14379565-C-A **
21771646-C-A 19609760-C-A **
26147355-A-AG 24001208-A-AG P1_Y1 **
11665039-G-A **
19129087-C-A 17017207-C-A **
17886441-C-A 15774561-C-A **
19301315-G-T 17189435-G-T **
14527467-C-A 12415668-C-A **
13213364-TA-T 11057688-TA-T **
7163158-C-A 7295117-C-A **
10832542-C-A **
28521640-C-A 26375493-C-A **
14561400-C-A 12449601-C-A **
6918312-G-C 7050271-G-C **
15515272-C-A 13403392-C-A **
15677410-G-T 13565530-G-T **
3275488-G-T 3407447-G-T **
18853485-C-A 16741605-C-A **
3358529-AT-A 3490488-AT-A 18×T**
20640235-G-T 18478349-G-T P4_Prx **
13705250-T-A 11549574-T-A **
3610154-C-A 3742113-C-A **
17568517-C-A 15456637-C-A **
18892276-ATTTAT-A,ATTTTA 16780396-ATTTAT-A,ATTTTA 7×TTTAT***
13703940-T-G 11548264-T-G BY89101 ***
19047817-CGTGT-C 16935937-CGTGT-C 16×GT***
13489634-CA-AA,C 11333958-CA-AA,C ***
9974498-G-A 10136889-G-A ***
13481883-C-A 11326207-C-A ***
22360522-T-A 20198636-T-A DYZ19 ***
13703875-A-G 11548199-A-G ***
13706407-T-C 11550731-T-C BY1008 ***
22251183-A-T 20089297-A-T DYZ19 ***
15179010-CAA-C 13067096-CAA-C 25×A***
13703880-C-G 11548204-C-G ***
58979803-CCTATTCCATTCCTCT-C,CCCTTTCGATTCCTCT 56833656-CCTATTCCATTCCTCT-C,CCCTTTCGATTCCTCT ***
13489217-C-T 11333541-C-T ***
13705924-G-T 11550248-G-T ***
13704114-C-CAATGG 11548438-C-CAATGG ***
58976961-C-T 56830814-C-T ***
22625086-C-A 20463200-C-A ***
13705917-C-A 11550241-C-A ***
58982946-C-T 56836799-C-T ***
25497749-G-A 23351602-G-A P2_r2 ***
9945880-C-A 10108271-C-A ***
22284110-T-A 20122224-T-A DYZ19 ***
13482949-A-G 11327273-A-G ***
9654280-GAAGA-G,GAAGAAAGA 9816671-GAAGA-G,GAAGAAAGA IR3_Prx 17×AAGA***
13483386-A-G 11327710-A-G ***
13703450-A-T 11547774-A-T ***
13304795-C-A 11149119-C-A ***
18848576-G-T 16736696-G-T ***
14030664-AT-A,ATT 11909958-AT-A,ATT 14×T***
10935561-C-A ***
7705042-T-C 7837001-T-C ***
56839632-C-A ***
10845755-C-A ***
13482922-T-G 11327246-T-G ***
10844094-T-C ***
10844090-C-T ***
9524124-C-A 9686515-C-A ***
3992014-C-A 4123973-C-A ***
7417561-CTTTT-C,CT 7549520-CTTTT-C,CT 14×T***
4147968-C-A 4279927-C-A ***
7053839-A-G 7185798-A-G ***
5180540-T-C 5312499-T-C ***
13706007-TT-T,TC 11550331-TT-T,TC ***
13482908-A-G 11327232-A-G ***
11668667-C-A ***
13483328-C-A 11327652-C-A ***
10937365-AATTCC-A ***
2836391-A-C 2968350-A-C ***
21362048-G-T 19200162-G-T ***
10987901-C-T ***
13194008-C-T 11038332-C-T ***
13705987-T-A 11550311-T-A ***
13489216-G-T 11333540-G-T ***
10986784-A-G ***
15964642-CTTT-C 13852762-CTTT-C 14×T***
13482897-G-A 11327221-G-A ***
16593766-C-A 14481886-C-A ***
11643720-A-C ***
22023684-G-GTT 19861798-G-GTT 17×T***
2752415-TAAA-T,TAA 2884374-TAAA-T,TAA 23×A***
23188656-C-A 21026770-C-A ***
10647794-C-A ***
14198462-A-G 12077756-A-G ***
13936205-GAAGA-G,GAAGAAAGA 11815499-GAAGA-G,GAAGAAAGA 14×AAGA***
18454933-CTA-C,CTTTCTTTCTA 16343053-CTA-C,CTTTCTTTCTA P6_Dst ***
7321465-CA-C,CAA 7453424-CA-C,CAA 13×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1664391084873178775477958772
Kit: 166439991205580486007927014
Used in age calculations1084873180486007958772
Counts of SNPs1212
Variant counts last updated 2018-06-18 21:27:11.



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