Buchanan
BigY2: 120823Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 120823 |
---|---|---|---|---|---|---|---|---|
25901370-G-A | 23755223-G-A | P1_Y1 | A* | |||||
19591509-T-C | 17479629-T-C | P5_Prx | Y | A* | ||||
13689760-G-A | 11534084-G-A | A* | ||||||
13687714-A-T | 11532038-A-T | A* | ||||||
6238109-G-A | 6370068-G-A | IR3_Dst | A* | |||||
8417561-C-G | 8549520-C-G | BY72513 | Y | Y | + | |||
21931465-C-G | 19769579-C-G | BY136540 | Y | Y | + | |||
14783329-G-C | 12671399-G-C | BY97579 | Y | Y | + | |||
15373429-C-T | 13261549-C-T | BY101177 | Y | Y | + | |||
23979306-G-A | 21833159-G-A | BY148962 | Y | + | ||||
9135583-T-C | 9297974-T-C | BY78411 | Y | + | ||||
14117467-A-T | 11996761-A-T | BY93153 | Y | Y | + | |||
2703171-T-C | 2835130-T-C | BY55878 | Y | Y | + | |||
17075480-C-T | 14963600-C-T | Y19872 | Y | Y | + | |||
22340583-G-A | 20178697-G-A | FT310268 | DYZ19 | * | ||||
16989215-C-A | 14877335-C-A | ** | ||||||
15749239-C-A | 13637359-C-A | ** | ||||||
15745524-C-T | 13633644-C-T | ** | ||||||
15732930-C-A | 13621050-C-A | ** | ||||||
15717898-A-AACAG | 13606018-A-AACAG | ** | ||||||
15682781-A-G | 13570901-A-G | ** | ||||||
15679892-C-A | 13568012-C-A | FT117180 | ** | |||||
15655250-C-A | 13543370-C-A | ** | ||||||
15655227-G-T | 13543347-G-T | ** | ||||||
15398434-AT-A | 13286554-AT-A | ** | ||||||
15396745-C-A | 13284865-C-A | ** | ||||||
15365260-C-A | 13253380-C-A | ** | ||||||
15368758-C-A | 13256878-C-A | ** | ||||||
15788213-C-A | 13676333-C-A | ** | ||||||
15290075-C-G | 13178174-C-G | ** | ||||||
15279335-A-G | 13167434-A-G | ** | ||||||
15221294-C-A | 13109380-C-A | ** | ||||||
15212560-C-A | 13100646-C-A | ** | ||||||
15169040-C-A | 13057126-C-A | ** | ||||||
15080802-G-A | 12968892-G-A | ** | ||||||
14986256-C-A | 12874324-C-A | FT260663 | ** | |||||
14953597-C-A | 12841671-C-A | ** | ||||||
17098877-C-A | 14986997-C-A | ** | ||||||
14724641-C-A | 12612709-C-A | ** | ||||||
17122376-C-A | 15010496-C-A | ** | ||||||
15776179-G-A | 13664299-G-A | ** | ||||||
15790433-C-A | 13678553-C-A | ** | ||||||
16941513-C-A | 14829633-C-A | ** | ||||||
16466630-T-C | 14354750-T-C | ** | ||||||
16921463-C-A | 14809583-C-A | ** | ||||||
16896289-C-A | 14784409-C-A | ** | ||||||
16842114-C-A | 14730234-C-A | ** | ||||||
16705558-C-T | 14593678-C-T | ** | ||||||
16665440-C-A | 14553560-C-A | ** | ||||||
16652768-C-A | 14540888-C-A | ** | ||||||
16621081-G-A | 14509201-G-A | ** | ||||||
16619944-T-C | 14508064-T-C | ** | ||||||
16516428-G-A | 14404548-G-A | ** | ||||||
16492853-G-T | 14380973-G-T | ** | ||||||
17058522-A-T | 14946642-A-T | ** | ||||||
16421959-C-A | 14310079-C-A | ** | ||||||
15798274-C-A | 13686394-C-A | ** | ||||||
16278623-T-A | 14166743-T-A | ** | ||||||
16277899-C-A | 14166019-C-A | ** | ||||||
16240910-C-A | 14129030-C-A | ** | ||||||
16092607-C-A | 13980727-C-A | ** | ||||||
16059917-T-C | 13948037-T-C | ** | ||||||
16059708-C-G | 13947828-C-G | ** | ||||||
16053728-C-A | 13941848-C-A | ** | ||||||
14712560-G-T | 12600627-G-T | ** | ||||||
16016381-C-A | 13904501-C-A | ** | ||||||
15987393-C-A | 13875513-C-A | ** | ||||||
15943442-G-T | 13831562-G-T | ** | ||||||
17093436-C-A | 14981556-C-A | ** | ||||||
14717706-CA-C | 12605774-CA-C | ** | ||||||
14550306-A-T | 12438507-A-T | ** | ||||||
14711897-C-A | 12599964-C-A | ** | ||||||
13895086-C-A | 11774380-C-A | ** | ||||||
14035201-C-A | 11914495-C-A | ** | ||||||
14031948-C-T | 11911242-C-T | ** | ||||||
14022024-C-A | 11901318-C-A | ** | ||||||
14017477-A-T | 11896771-A-T | ** | ||||||
13993546-C-A | 11872840-C-A | ** | ||||||
13974687-C-T | 11853981-C-T | ** | ||||||
13952178-T-C | 11831472-T-C | ** | ||||||
13942607-AC-A | 11821901-AC-A | ** | ||||||
13940983-C-A | 11820277-C-A | ** | ||||||
13935803-C-A | 11815097-C-A | ** | ||||||
13927941-C-A | 11807235-C-A | ** | ||||||
13919973-C-A | 11799267-C-A | ** | ||||||
13894247-G-T | 11773541-G-T | ** | ||||||
14142303-C-A | 12021597-C-A | ** | ||||||
13894130-G-A | 11773424-G-A | ** | ||||||
13858619-G-T | 11737913-G-T | ** | ||||||
13857001-C-T | 11736295-C-T | ** | ||||||
13854621-C-A | 11733915-C-A | ** | ||||||
11672972-G-T | ** | |||||||
11659291-G-T | ** | |||||||
9843166-G-A | 10005557-G-A | ** | ||||||
13627227-C-A | 11471551-C-A | ** | ||||||
13567191-C-A | 11411515-C-A | ** | ||||||
13551276-C-A | 11395600-C-A | ** | ||||||
13509014-T-A | 11353338-T-A | ** | ||||||
13494155-C-A | 11338479-C-A | ** | ||||||
13487127-C-T | 11331451-C-T | ** | ||||||
14089808-C-A | 11969102-C-A | ** | ||||||
14160158-C-T | 12039452-C-T | BY96037 | FT34327 | ** | ||||
14693716-C-A | 12581782-C-A | ** | ||||||
14425087-C-A | 12304362-C-A | ** | ||||||
14639033-C-A | 12527102-C-A | ** | ||||||
14558070-C-A | 12446271-C-A | ** | ||||||
17215088-A-G | 15103208-A-G | ** | ||||||
14531230-T-C | 12419431-T-C | ** | ||||||
14531162-C-A | 12419363-C-A | ** | ||||||
14521716-C-A | 12409917-C-A | ** | ||||||
14517299-C-A | 12405500-C-A | ** | ||||||
14505780-C-G | 12393985-C-G | ** | ||||||
14483226-C-A | 12362495-C-A | ** | ||||||
14443086-T-A | 12322359-T-A | ** | ||||||
14425098-G-A | 12304373-G-A | ** | ||||||
14425090-GA-G | 12304365-GA-G | ** | ||||||
14425088-T-G | 12304363-T-G | ** | ||||||
14424980-G-A | 12304255-G-A | ** | ||||||
14168082-C-A | 12047376-C-A | ** | ||||||
14357789-C-A | 12237084-C-A | ** | ||||||
14355273-C-A | 12234568-C-A | ** | ||||||
14352080-C-A | 12231375-C-A | ** | ||||||
14344005-C-A | 12223300-C-A | ** | ||||||
14299825-G-C | 12179119-G-C | ** | ||||||
14297292-C-A | 12176586-C-A | ** | ||||||
14284674-C-A | 12163968-C-A | ** | ||||||
14281055-C-A | 12160349-C-A | ** | ||||||
14232760-C-A | 12112054-C-A | ** | ||||||
14219531-T-G | 12098825-T-G | ** | ||||||
14212192-C-A | 12091486-C-A | ** | ||||||
14184533-T-G | 12063827-T-G | ** | ||||||
14168129-T-G | 12047423-T-G | ** | ||||||
17175501-G-C | 15063621-G-C | ** | ||||||
17504770-A-G | 15392890-A-G | ** | ||||||
17217037-T-C | 15105157-T-C | ** | ||||||
22902071-C-A | 20740185-C-A | ** | ||||||
23779953-C-A | 21618067-C-A | ** | ||||||
23464691-C-A | 21302805-C-A | ** | ||||||
23439885-C-A | 21277999-C-A | ** | ||||||
23421094-C-T | 21259208-C-T | ** | ||||||
23380966-C-A | 21219080-C-A | ** | ||||||
23364231-C-A | 21202345-C-A | ** | ||||||
23317746-C-A | 21155860-C-A | ** | ||||||
23285419-AT-A | 21123533-AT-A | 10×T | ** | |||||
23285323-C-A | 21123437-C-A | ** | ||||||
23285214-C-A | 21123328-C-A | ** | ||||||
23142349-C-A | 20980463-C-A | ** | ||||||
22950141-C-A | 20788255-C-A | ** | ||||||
22871489-C-A | 20709603-C-A | ** | ||||||
24422035-T-G | 22275888-T-G | ** | ||||||
22775480-C-A | 20613594-C-A | ** | ||||||
22732766-A-G | 20570880-A-G | ** | ||||||
22698915-C-A | 20537029-C-A | ** | ||||||
22592283-G-A | 20430397-G-A | ** | ||||||
22587918-C-A | 20426032-C-A | ** | ||||||
22487807-A-G | 20325921-A-G | DYZ19 | ** | |||||
22447034-A-C | 20285148-A-C | DYZ19 | ** | |||||
22366255-A-C | 20204369-A-C | DYZ19 | ** | |||||
22171957-G-T | 20010071-G-T | ** | ||||||
22128774-C-A | 19966888-C-A | ** | ||||||
22114770-G-A | 19952884-G-A | ** | ||||||
22013062-G-T | 19851176-G-T | ** | ||||||
21939747-G-A | 19777861-G-A | ** | ||||||
23997061-C-A | 21850914-C-A | ** | ||||||
24509417-C-A | 22363270-C-A | ** | ||||||
21677450-C-T | 19515564-C-T | ** | ||||||
28530730-T-C | 26384583-T-C | ** | ||||||
56823295-TACACACACACAC-T | 13×AC | ** | ||||||
28757951-C-A | 26611804-C-A | ** | ||||||
28729286-A-G | 26583139-A-G | ** | ||||||
28725015-T-C | 26578868-T-C | ** | ||||||
28718888-C-A | 26572741-C-A | ** | ||||||
28633722-C-A | 26487575-C-A | ** | ||||||
28617735-C-A | 26471588-C-A | ** | ||||||
28617557-T-C | 26471410-T-C | ** | ||||||
28591711-C-A | 26445564-C-A | ** | ||||||
28581245-C-T | 26435098-C-T | ** | ||||||
28558627-C-A | 26412480-C-A | ** | ||||||
28558080-C-T | 26411933-C-T | ** | ||||||
28534578-C-A | 26388431-C-A | ** | ||||||
28513622-C-A | 26367475-C-A | ** | ||||||
24634103-T-A | 22487956-T-A | P3_t2 | ** | |||||
28506283-C-A | 26360136-C-A | ** | ||||||
28461975-GG-A | 26315828-GG-A | ** | ||||||
28461965-CG-A | 26315818-CG-A | ** | ||||||
28461934-G-A | 26315787-G-A | ** | ||||||
28461927-T-G | 26315780-T-G | ** | ||||||
28460886-C-A | 26314739-C-A | ** | ||||||
27606946-G-T | 25460799-G-T | P1_Y2 | ** | |||||
27585790-C-A | 25439643-C-A | P1_Y2 | ** | |||||
27576052-G-A | 25429905-G-A | P1_Y2 | ** | |||||
26328681-C-A | 24182534-C-A | P1_Y1 | ** | |||||
26045911-T-A | 23899764-T-A | P1_Y1 | ** | |||||
25841765-G-T | 23695618-G-T | P1_b3 | ** | |||||
25533584-G-T | 23387437-G-T | P1_gr1 | ** | |||||
21771648-A-T | 19609762-A-T | ** | ||||||
21459920-C-T | 19298034-C-T | ** | ||||||
17244590-G-T | 15132710-G-T | ** | ||||||
18173265-C-A | 16061385-C-A | ** | ||||||
19248227-C-A | 17136347-C-A | ** | ||||||
19231358-C-T | 17119478-C-T | ** | ||||||
19228929-A-G | 17117049-A-G | ** | ||||||
19183871-C-A | 17071991-C-A | ** | ||||||
19041241-G-T | 16929361-G-T | ** | ||||||
19031132-C-A | 16919252-C-A | ** | ||||||
18902091-C-A | 16790211-C-A | ** | ||||||
18901951-C-A | 16790071-C-A | ** | ||||||
18844275-G-T | 16732395-G-T | ** | ||||||
18844010-C-A | 16732130-C-A | ** | ||||||
18707903-C-G | 16596023-C-G | ** | ||||||
18580465-C-A | 16468585-C-A | ** | ||||||
18531161-C-A | 16419281-C-A | P6_Dst | ** | |||||
18159185-C-T | 16047305-C-T | ** | ||||||
19272186-T-C | 17160306-T-C | ** | ||||||
18127941-C-A | 16016061-C-A | ** | ||||||
18101108-C-T | 15989228-C-T | ** | ||||||
18086751-C-A | 15974871-C-A | ** | ||||||
18085532-C-A | 15973652-C-A | ** | ||||||
18001969-T-C | 15890089-T-C | P7_Gap | ** | |||||
17956000-C-A | 15844120-C-A | ** | ||||||
17865435-C-A | 15753555-C-A | ** | ||||||
17858892-T-G | 15747012-T-G | ** | ||||||
17858891-C-G | 15747011-C-G | ** | ||||||
17622482-C-T | 15510602-C-T | ** | ||||||
13468199-A-G | 11312523-A-G | ** | ||||||
17315432-C-A | 15203552-C-A | ** | ||||||
17246299-C-A | 15134419-C-A | ** | ||||||
19250714-A-T | 17138834-A-T | ** | ||||||
19304353-A-G | 17192473-A-G | ** | ||||||
21388751-C-A | 19226865-C-A | ** | ||||||
20352426-G-T | 18190540-G-T | P5_Dst | ** | |||||
21371063-A-G | 19209177-A-G | ** | ||||||
21346483-C-A | 19184597-C-A | ** | ||||||
21315266-C-A | 19153380-C-A | ** | ||||||
21296737-G-T | 19134851-G-T | ** | ||||||
21272791-G-T | 19110905-G-T | ** | ||||||
21187716-T-C | 19025830-T-C | ** | ||||||
21153854-C-A | 18991968-C-A | ** | ||||||
21037561-C-A | 18875675-C-A | ** | ||||||
21037178-G-A | 18875292-G-A | ** | ||||||
20433584-G-T | 18271698-G-T | P5_Dst | ** | |||||
20433573-A-C | 18271687-A-C | P5_Dst | ** | |||||
20425953-G-T | 18264067-G-T | P5_Dst | ** | |||||
20389107-T-TC | 18227221-T-TC | P5_Dst | ** | |||||
20330546-G-T | 18168660-G-T | P5_Dst | ** | |||||
19314709-A-ATT | 17202829-A-ATT | 17×T | ** | |||||
20025441-CTCTCTCTCT-C | 17913561-CTCTCTCTCT-C | P5_Prx | ** | |||||
19958123-T-TC | 17846243-T-TC | P5_Prx | ** | |||||
19958119-T-G | 17846239-T-G | P5_Prx | ** | |||||
19958049-C-G | 17846169-C-G | P5_Prx | ** | |||||
19721456-G-T | 17609576-G-T | P5_Prx | ** | |||||
19518604-C-A | 17406724-C-A | ** | ||||||
19463726-G-T | 17351846-G-T | FT252361 | ** | |||||
19429530-C-A | 17317650-C-A | ** | ||||||
19424462-A-C | 17312582-A-C | ** | ||||||
19416892-C-A | 17305012-C-A | ** | ||||||
19388144-C-A | 17276264-C-A | ** | ||||||
19356380-C-A | 17244500-C-A | ** | ||||||
19340495-C-A | 17228615-C-A | ** | ||||||
13480611-C-A | 11324935-C-A | ** | ||||||
13728867-A-G | 11573191-A-G | ** | ||||||
3785470-G-T | 3917429-G-T | ** | ||||||
6790289-C-A | 6922248-C-A | ** | ||||||
6998084-C-G | 7130043-C-G | ** | ||||||
6955048-T-A | 7087007-T-A | ** | ||||||
3572380-C-A | 3704339-C-A | ** | ||||||
3602571-C-A | 3734530-C-A | ** | ||||||
6922830-C-G | 7054789-C-G | ** | ||||||
6916222-C-A | 7048181-C-A | ** | ||||||
6916184-C-A | 7048143-C-A | FT215370 | ** | |||||
6881298-G-A | 7013257-G-A | FT276402 | ** | |||||
6868907-C-A | 7000866-C-A | ** | ||||||
6833246-A-G | 6965205-A-G | ** | ||||||
6829501-C-T | 6961460-C-T | ** | ||||||
6790338-T-A | 6922297-T-A | ** | ||||||
6772935-A-C | 6904894-A-C | ** | ||||||
7015257-G-T | 7147216-G-T | ** | ||||||
3613941-C-A | 3745900-C-A | FT3680 | ** | |||||
6634259-GTTTTT-G | 6766218-GTTTTT-G | 15×T | ** | |||||
6592387-C-A | 6724346-C-A | ** | ||||||
6585420-C-T | 6717379-C-T | ** | ||||||
6490700-C-A | 6622659-C-A | ** | ||||||
6460462-A-T | 6592421-A-T | ** | ||||||
6454645-C-A | 6586604-C-A | ** | ||||||
6444863-C-A | 6576822-C-A | ** | ||||||
6415159-C-A | 6547118-C-A | ** | ||||||
6405115-G-T | 6537074-G-T | ** | ||||||
6358379-A-G | 6490338-A-G | ** | ||||||
6052383-G-T | 6184342-G-T | ** | ||||||
3437117-T-TA | 3569076-T-TA | 9×A | ** | |||||
7098822-C-A | 7230781-C-A | ** | ||||||
6001393-C-A | 6133352-C-A | ** | ||||||
7319154-C-A | 7451113-C-A | ** | ||||||
7759217-G-T | 7891176-G-T | ** | ||||||
7579989-C-A | 7711948-C-A | ** | ||||||
7463917-T-A | 7595876-T-A | IR1_L | ** | |||||
7433936-C-A | 7565895-C-A | ** | ||||||
7428147-C-A | 7560106-C-A | ** | ||||||
7422332-C-A | 7554291-C-A | ** | ||||||
7380373-G-A | 7512332-G-A | ** | ||||||
3089802-A-G | 3221761-A-G | ** | ||||||
7373122-G-T | 7505081-G-T | ** | ||||||
7373086-G-T | 7505045-G-T | ** | ||||||
7360599-C-A | 7492558-C-A | ** | ||||||
7321479-G-A | 7453438-G-A | ** | ||||||
7319116-C-T | 7451075-C-T | ** | ||||||
7138442-C-A | 7270401-C-A | ** | ||||||
13446178-A-G | 11290502-A-G | ** | ||||||
7311869-C-A | 7443828-C-A | ** | ||||||
7277732-C-A | 7409691-C-A | ** | ||||||
7264678-C-A | 7396637-C-A | ** | ||||||
7256158-G-T | 7388117-G-T | ** | ||||||
7225634-C-A | 7357593-C-A | ** | ||||||
3373952-G-T | 3505911-G-T | ** | ||||||
7221594-C-A | 7353553-C-A | ** | ||||||
7204811-C-A | 7336770-C-A | ** | ||||||
7197293-C-A | 7329252-C-A | ** | ||||||
7186281-C-A | 7318240-C-A | ** | ||||||
7156723-G-A | 7288682-G-A | ** | ||||||
6012785-T-C | 6144744-T-C | ** | ||||||
5990338-G-T | 6122297-G-T | ** | ||||||
3732223-C-A | 3864182-C-A | ** | ||||||
4244534-C-A | 4376493-C-A | ** | ||||||
5038519-A-G | 5170478-A-G | ** | ||||||
5010972-T-G | 5142931-T-G | ** | ||||||
4960394-C-A | 5092353-C-A | ** | ||||||
4920144-C-A | 5052103-C-A | ** | ||||||
4918863-C-A | 5050822-C-A | ** | ||||||
4897983-AG-A | 5029942-AG-A | ** | ||||||
4788459-C-A | 4920418-C-A | ** | ||||||
4781275-G-T | 4913234-G-T | ** | ||||||
4437920-T-A | 4569879-T-A | ** | ||||||
4371959-C-A | 4503918-C-A | ** | ||||||
4301910-C-A | 4433869-C-A | ** | ||||||
4270632-C-A | 4402591-C-A | ** | ||||||
4244476-C-A | 4376435-C-A | ** | ||||||
5125803-C-A | 5257762-C-A | ** | ||||||
4212539-C-A | 4344498-C-A | ** | ||||||
4133906-C-A | 4265865-C-A | ** | ||||||
4100707-T-C | 4232666-T-C | ** | ||||||
4065305-A-G | 4197264-A-G | ** | ||||||
4016495-CT-C | 4148454-CT-C | ** | ||||||
3890096-T-C | 4022055-T-C | ** | ||||||
3695905-G-A | 3827864-G-A | ** | ||||||
3877248-C-A | 4009207-C-A | ** | ||||||
3847439-C-A | 3979398-C-A | ** | ||||||
3830851-C-A | 3962810-C-A | ** | ||||||
3829358-C-A | 3961317-C-A | ** | ||||||
3821112-A-G | 3953071-A-G | ** | ||||||
5059564-A-C | 5191523-A-C | ** | ||||||
5127100-C-A | 5259059-C-A | ** | ||||||
5956990-C-A | 6088949-C-A | ** | ||||||
5393393-A-G | 5525352-A-G | FT64827 | ** | |||||
5924723-A-C | 6056682-A-C | ** | ||||||
5924694-C-CCA | 6056653-C-CCA | 9×CA | ** | |||||
3628087-C-T | 3760046-C-T | ** | ||||||
5858424-C-A | 5990383-C-A | ** | ||||||
5691174-G-C | 5823133-G-C | ** | ||||||
5691132-C-A | 5823091-C-A | ** | ||||||
3649167-A-T | 3781126-A-T | ** | ||||||
5524546-C-A | 5656505-C-A | ** | ||||||
5522887-C-A | 5654846-C-A | ** | ||||||
3666599-C-A | 3798558-C-A | ** | ||||||
5446962-C-A | 5578921-C-A | ** | ||||||
5421242-C-A | 5553201-C-A | ** | ||||||
5387618-T-A | 5519577-T-A | ** | ||||||
5184593-G-T | 5316552-G-T | ** | ||||||
5336165-G-T | 5468124-G-T | ** | ||||||
5264156-G-T | 5396115-G-T | ** | ||||||
5264153-C-T | 5396112-C-T | ** | ||||||
5264142-T-C | 5396101-T-C | ** | ||||||
5259443-G-T | 5391402-G-T | ** | ||||||
3688318-C-A | 3820277-C-A | ** | ||||||
5252626-C-A | 5384585-C-A | ** | ||||||
5242336-C-A | 5374295-C-A | ** | ||||||
5190442-C-A | 5322401-C-A | ** | ||||||
5189620-C-A | 5321579-C-A | ** | ||||||
5189606-T-G | 5321565-T-G | ** | ||||||
5186422-G-T | 5318381-G-T | ** | ||||||
7863212-C-A | 7995171-C-A | ** | ||||||
7897594-G-T | 8029553-G-T | ** | ||||||
7923763-C-G | 8055722-C-G | ** | ||||||
10780995-G-T | ** | |||||||
10858626-C-A | ** | |||||||
10847568-A-T | ** | |||||||
10846605-G-T | ** | |||||||
10842146-G-T | ** | |||||||
10829222-A-G | ** | |||||||
10803814-T-A | ** | |||||||
10802498-T-C | ** | |||||||
10800185-C-A | ** | |||||||
10797792-T-C | ** | |||||||
21919403-TC-T | 19757517-TC-T | ** | ||||||
22166584-G-T | 20004698-G-T | ** | ||||||
22229316-C-T | 20067430-C-T | DYZ19 | ** | |||||
10776721-C-A | ** | |||||||
10888666-T-C | ** | |||||||
10775422-G-T | ** | |||||||
10773922-C-A | ** | |||||||
10771798-G-T | ** | |||||||
10754858-T-G | ** | |||||||
10754838-G-T | ** | |||||||
10754835-C-G | ** | |||||||
10754833-A-C | ** | |||||||
10754832-C-T | ** | |||||||
10754830-C-T | ** | |||||||
10754816-T-C | ** | |||||||
10754802-T-G | ** | |||||||
10754782-T-A | ** | |||||||
10866165-TCTACTC-T | ** | |||||||
10889652-C-A | ** | |||||||
7970435-T-C | 8102394-T-C | ** | ||||||
10973255-C-A | ** | |||||||
13364050-G-A | 11208374-G-A | ** | ||||||
13349577-C-A | 11193901-C-A | ** | ||||||
13323824-C-A | 11168148-C-A | ** | ||||||
13313884-C-A | 11158208-C-A | ** | ||||||
13206408-C-A | 11050732-C-A | ** | ||||||
11030699-T-C | ** | |||||||
11028122-C-A | ** | |||||||
11027548-C-A | ** | |||||||
11023030-T-A | ** | |||||||
11020116-C-T | ** | |||||||
11009365-T-A | ** | |||||||
10990071-C-G | ** | |||||||
10973240-C-A | ** | |||||||
10889789-C-A | ** | |||||||
10964274-G-T | ** | |||||||
10951276-T-A | ** | |||||||
10929264-C-A | ** | |||||||
10902234-G-C | ** | |||||||
10902229-T-C | ** | |||||||
10902217-C-T | ** | |||||||
10902216-C-T | ** | |||||||
10902214-C-T | ** | |||||||
10901667-C-A | ** | |||||||
10894779-C-A | ** | |||||||
10892547-C-CGGGTTGTTTG | ** | |||||||
10892096-C-A | ** | |||||||
10890105-T-C | ** | |||||||
2684020-C-A | 2815979-C-A | ** | ||||||
10751080-T-ACTCCA | ** | |||||||
10751059-C-T | ** | |||||||
9229387-C-T | 9391778-C-T | ** | ||||||
9588445-G-GGAT | 9750836-G-GGAT | IR3_Prx | ** | |||||
9499875-A-G | 9662266-A-G | ** | ||||||
9499858-G-T | 9662249-G-T | ** | ||||||
9442187-C-A | 9604578-C-A | ** | ||||||
9431607-G-A | 9593998-G-A | ** | ||||||
2888803-G-A | 3020762-G-A | FGC12805 | ** | |||||
9431595-G-T | 9593986-G-T | ** | ||||||
9431582-A-G | 9593973-A-G | ** | ||||||
2900415-G-T | 3032374-G-T | ** | ||||||
9431581-C-T | 9593972-C-T | ** | ||||||
9431578-T-C | 9593969-T-C | ** | ||||||
9063215-C-A | 9225606-C-A | ** | ||||||
9824114-A-T | 9986505-A-T | ** | ||||||
8981593-C-A | 9143984-C-A | ** | ||||||
8697816-T-C | 8829775-T-C | ** | ||||||
8697711-C-A | 8829670-C-A | ** | ||||||
8679433-T-A | 8811392-T-A | ** | ||||||
8678072-C-A | 8810031-C-A | ** | ||||||
8371819-C-A | 8503778-C-A | ** | ||||||
8353303-C-A | 8485262-C-A | ** | ||||||
2975590-C-A | 3107549-C-A | ** | ||||||
2986457-C-A | 3118416-C-A | ** | ||||||
8216547-G-T | 8348506-G-T | ** | ||||||
8214215-G-T | 8346174-G-T | ** | ||||||
10686091-G-T | ** | |||||||
9764132-A-T | 9926523-A-T | ** | ||||||
9832602-T-A | 9994993-T-A | ** | ||||||
9957905-C-A | 10120296-C-A | ** | ||||||
10011183-A-G | 10173574-A-G | ** | ||||||
9996447-C-T | 10158838-C-T | ** | ||||||
9980647-C-A | 10143038-C-A | ** | ||||||
2806195-ATTTTTTTT-A | 2938154-ATTTTTTTT-A | 36×T | ** | |||||
10625643-C-A | ** | |||||||
10627772-C-G | ** | |||||||
9832603-G-A | 9994994-G-A | ** | ||||||
10668466-T-C | ** | |||||||
9962356-C-A | 10124747-C-A | ** | ||||||
2806240-C-G | 2938199-C-G | ** | ||||||
9942470-C-A | 10104861-C-A | ** | ||||||
10041977-C-A | 10204368-C-A | ** | ||||||
2807024-TTATATATATATATATA-T | 2938983-TTATATATATATATATA-T | 20×TA | ** | |||||
10683347-T-A | ** | |||||||
2784390-C-G | 2916349-C-G | ** | ||||||
9928698-C-A | 10091089-C-A | ** | ||||||
9928689-C-A | 10091080-C-A | ** | ||||||
2810429-A-T | 2942388-A-T | ** | ||||||
9926882-C-A | 10089273-C-A | ** | ||||||
9925193-C-G | 10087584-C-G | ** | ||||||
9899776-T-A | 10062167-T-A | ** | ||||||
2697630-G-T | 2829589-G-T | ** | ||||||
10040283-C-A | 10202674-C-A | ** | ||||||
3267758-C-A | 3399717-C-A | *** | ||||||
56842413-G-T | *** | |||||||
2960062-CAAAAAAA-C | 3092021-CAAAAAAA-C | 17×A | *** | |||||
2948521-C-A | 3080480-C-A | *** | ||||||
28481180-C-A | 26335033-C-A | *** | ||||||
2810366-ATTTTT-A,ATTTTTTT | 2942325-ATTTTT-A,ATTTTTTT | 23×T | *** | |||||
28469148-C-A | 26323001-C-A | *** | ||||||
16247952-T-C | 14136072-T-C | *** | ||||||
13446528-TCCATTCCATTCCATTCC-T | 11290852-TCCATTCCATTCCATTCC-T | *** | ||||||
17424950-C-A | 15313070-C-A | *** | ||||||
3696761-A-G | 3828720-A-G | *** | ||||||
10685906-C-A | *** | |||||||
15930894-C-A | 13819014-C-A | *** | ||||||
15515298-T-C | 13403418-T-C | *** | ||||||
15380247-A-C | 13268367-A-C | *** | ||||||
9938306-G-T | 10100697-G-T | *** | ||||||
15336702-C-A | 13224820-C-A | *** | ||||||
15012296-CTTTT-C,CTTT | 12900384-CTTTT-C,CTTT | 17×T | *** | |||||
10685932-C-A | *** | |||||||
16057158-C-A | 13945278-C-A | *** | ||||||
10753154-C-A | *** | |||||||
10776598-A-T | *** | |||||||
10781226-C-T | *** | |||||||
10787261-A-G | *** | |||||||
10794269-TACTCCACTCC-T,TACTCCACTGC | *** | |||||||
10885131-C-T | *** | |||||||
16006677-G-T | 13894797-G-T | *** | ||||||
9313667-G-A | 9476058-G-A | *** | ||||||
23476162-TA-T | 21314276-TA-T | *** | ||||||
18714115-CT-C | 16602235-CT-C | 9×T | *** | |||||
21605189-C-A | 19443303-C-A | FGC39191 | *** | |||||
21143298-CTTT-C | 18981412-CTTT-C | 15×T | *** | |||||
5609636-C-A | 5741595-C-A | *** | ||||||
5873549-G-T | 6005508-G-T | *** | ||||||
6763995-C-A | 6895954-C-A | *** | ||||||
18756123-A-G | 16644243-A-G | *** | ||||||
7009186-TC-T,TT | 7141145-TC-T,TT | *** | ||||||
8333623-CCTACTTCTT-C | 8465582-CCTACTTCTT-C | *** | ||||||
17928879-C-A | 15816999-C-A | *** | ||||||
17885729-G-T | 15773849-G-T | *** | ||||||
17424927-C-A | 15313047-C-A | *** | ||||||
17324060-AAGGG-A | 15212180-AAGGG-A | *** | ||||||
17146550-CAA-C,CA | 15034670-CAA-C,CA | 12×A | *** | |||||
8281806-G-A | 8413765-G-A | *** | ||||||
14724279-A-C | 12612347-A-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 120823 | 9896306 | 8058210 | 7937711 |
Used in age calculations | 9896306 | 8058210 | 7937711 |
Counts of SNPs | 8 | 9 |
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