McFarland
FTDNA: 502163, BigY2: 502163Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 502163 | BigY2 502163 |
---|---|---|---|---|---|---|---|---|---|
26079926-A-T | 23933779-A-T | P1_Y1 | A* | ||||||
13839433-A-G | 11718727-A-G | BY91087 | + | + | |||||
15933558-G-A | 13821678-G-A | S17740 | Y | Y | + | + | |||
16954797-G-A | 14842917-G-A | BY111374 | Y | Y | + | + | |||
17457037-T-C | 15345157-T-C | BY114919 | Y | Y | + | + | |||
7580621-A-G | 7712580-A-G | Y | Y | + | ** | ||||
17607135-C-A | 15495255-C-A | BY116115 | Y | Y | + | + | |||
18036929-C-T | 15925049-C-T | BY119361 | Y | Y | + | + | |||
22438869-A-G | 20276983-A-G | BY218599 | DYZ19 | + | |||||
22461840-C-T | 20299954-C-T | FT457840 | DYZ19 | + | + | ||||
23254701-C-T | 21092815-C-T | BY144143 | Y | Y | + | + | |||
14969231-C-A | 12857306-C-A | ** | |||||||
14938422-T-A | 12826497-T-A | ** | |||||||
15001409-A-T | 12889494-A-T | ** | |||||||
15001420-A-T | 12889505-A-T | ** | |||||||
14919434-GATTAC-G | 12807499-GATTAC-G | ** | |||||||
15001451-C-G | 12889536-C-G | ** | |||||||
15105128-T-G | 12993216-T-G | ** | |||||||
15276363-C-A | 13164452-C-A | ** | |||||||
15365181-C-A | 13253301-C-A | ** | |||||||
15365196-C-A | 13253316-C-A | ** | |||||||
15433096-T-G | 13321216-T-G | ** | |||||||
25246398-TCTC-T | 23100251-TCTC-T | P2_r1 | 6×CTC | ** | |||||
14867093-T-G | 12755163-T-G | ** | |||||||
15468233-C-A | 13356353-C-A | ** | |||||||
14589935-G-T | 12478135-G-T | ** | |||||||
14430415-A-C | 12309688-A-C | ** | |||||||
14430418-C-T | 12309691-C-T | ** | |||||||
14463312-C-A | 12342585-C-A | ** | |||||||
14465214-T-A | 12344487-T-A | ** | |||||||
14482274-T-A | 12361543-T-A | ** | |||||||
14557843-A-T | 12446044-A-T | ** | |||||||
14589957-T-A | 12478157-T-A | ** | |||||||
14854297-T-G | 12742363-T-G | ** | |||||||
14627797-C-A | 12515865-C-A | ** | |||||||
14672324-G-T | 12560390-G-T | ** | |||||||
14684258-A-G | 12572324-A-G | ** | |||||||
14764936-T-A | 12653005-T-A | ** | |||||||
14764942-C-CAG | 12653011-C-CAG | ** | |||||||
14788743-T-A | 12676814-T-A | ** | |||||||
14828711-T-A | 12716778-T-A | ** | |||||||
15433102-T-G | 13321222-T-G | ** | |||||||
15669852-T-C | 13557972-T-C | ** | |||||||
15491943-A-T | 13380063-A-T | ** | |||||||
15976583-A-C | 13864703-A-C | ** | |||||||
16559692-A-C | 14447812-A-C | ** | |||||||
16547134-C-A | 14435254-C-A | ** | |||||||
16426672-A-G | 14314792-A-G | ** | |||||||
16394228-C-A | 14282348-C-A | ** | |||||||
16244863-T-G | 14132983-T-G | ** | |||||||
16229967-C-A | 14118087-C-A | ** | |||||||
16171505-G-T | 14059625-G-T | ** | |||||||
16171477-A-T | 14059597-A-T | ** | |||||||
16091253-C-A | 13979373-C-A | ** | |||||||
16072934-C-A | 13961054-C-A | ** | |||||||
16049103-C-A | 13937223-C-A | ** | |||||||
16029048-C-A | 13917168-C-A | ** | |||||||
16001022-C-T | 13889142-C-T | ** | |||||||
15999763-G-T | 13887883-G-T | ** | |||||||
15957672-C-A | 13845792-C-A | ** | |||||||
15573576-G-C | 13461696-G-C | ** | |||||||
15952861-C-A | 13840981-C-A | ** | |||||||
15952205-AT-A | 13840325-AT-A | 9×T | ** | ||||||
15774956-G-T | 13663076-G-T | ** | |||||||
15764308-T-C | 13652428-T-C | ** | |||||||
15749169-G-T | 13637289-G-T | ** | |||||||
15749148-G-T | 13637268-G-T | ** | |||||||
15712327-G-T | 13600447-G-T | ** | |||||||
15712321-T-A | 13600441-T-A | ** | |||||||
15699848-C-A | 13587968-C-A | ** | |||||||
15676834-C-A | 13564954-C-A | ** | |||||||
14428048-C-A | 12307323-C-A | ** | |||||||
15669844-T-C | 13557964-T-C | ** | |||||||
15658228-C-A | 13546348-C-A | ** | |||||||
15598916-C-A | 13487036-C-A | ** | |||||||
14430412-C-G | 12309685-C-G | ** | |||||||
14025724-A-G | 11905018-A-G | ** | |||||||
14367636-G-A | 12246932-G-A | ** | |||||||
10927796-C-T | ** | ||||||||
10978966-T-C | ** | ||||||||
10976216-C-A | ** | ||||||||
10970639-T-G | ** | ||||||||
14680311-CAG-C | 12568377-CAG-C | ** | |||||||
10949473-T-A | ** | ||||||||
10949435-C-T | ** | ||||||||
10946163-C-T | ** | ||||||||
10943456-C-A | ** | ||||||||
10941439-C-A | ** | ||||||||
10930806-C-A | ** | ||||||||
10927826-T-A | ** | ||||||||
10927816-C-T | ** | ||||||||
10927814-C-T | ** | ||||||||
10927786-T-TTCTTC | ** | ||||||||
10989674-G-T | ** | ||||||||
10922361-TTCTAC-T | ** | ||||||||
10922355-A-T | ** | ||||||||
10922353-A-C | ** | ||||||||
10922344-C-T | ** | ||||||||
10922333-T-G | ** | ||||||||
10913666-G-T | ** | ||||||||
10900178-C-A | FT435924 | ** | |||||||
10887853-T-A | FT435606 | ** | |||||||
10877812-C-A | ** | ||||||||
10868379-C-A | ** | ||||||||
10849648-C-A | ** | ||||||||
10828456-C-A | ** | ||||||||
10824153-AT-A | ** | ||||||||
10824147-C-A | ** | ||||||||
10980496-C-A | ** | ||||||||
10992137-C-A | ** | ||||||||
14286928-C-CTTT | 12166222-C-CTTT | 16×T | ** | ||||||
13717762-C-G | 11562086-C-G | ** | |||||||
14278977-C-A | 12158271-C-A | ** | |||||||
14109449-C-A | 11988743-C-A | ** | |||||||
14073967-C-A | 11953261-C-A | ** | |||||||
14069998-C-A | 11949292-C-A | ** | |||||||
16703575-G-T | 14591695-G-T | ** | |||||||
14022894-G-T | 11902188-G-T | ** | |||||||
13945300-C-A | 11824594-C-A | ** | |||||||
13883204-C-A | 11762498-C-A | ** | |||||||
13850150-A-T | 11729444-A-T | ** | |||||||
11659701-G-A | ** | ||||||||
11653287-G-T | ** | ||||||||
11643717-T-C | ** | ||||||||
11643691-A-AC | ** | ||||||||
11643678-G-A | ** | ||||||||
13643845-C-A | 11488169-C-A | ** | |||||||
10992210-C-A | ** | ||||||||
13585171-C-A | 11429495-C-A | ** | |||||||
13227850-C-A | 11072174-C-A | ** | |||||||
13196427-TTCCATTCCCC-T | 11040751-TTCCATTCCCC-T | ** | |||||||
11026054-A-T | ** | ||||||||
11026053-C-T | ** | ||||||||
11014633-C-T | ** | ||||||||
11010498-C-A | ** | ||||||||
11006870-T-TC | ** | ||||||||
11006866-CA-C | ** | ||||||||
11005500-T-TTCAAC | ** | ||||||||
11002255-C-A | ** | ||||||||
10999859-GA-G | ** | ||||||||
10998051-C-G | ** | ||||||||
10996296-T-G | ** | ||||||||
16604956-C-A | 14493076-C-A | ** | |||||||
16995413-A-T | 14883533-A-T | ** | |||||||
16719679-C-A | 14607799-C-A | ** | |||||||
22549978-C-G | 20388092-C-G | ** | |||||||
23493530-G-T | 21331644-G-T | ** | |||||||
23465400-A-C | 21303514-A-C | ** | |||||||
23419280-C-A | 21257394-C-A | ** | |||||||
23368733-T-A | 21206847-T-A | ** | |||||||
23304383-C-A | 21142497-C-A | ** | |||||||
23256468-C-A | 21094582-C-A | ** | |||||||
23184817-C-A | 21022931-C-A | ** | |||||||
23120149-C-A | 20958263-C-A | FT244271 | ** | ||||||
23026687-A-C | 20864801-A-C | ** | |||||||
23011031-CA-C | 20849145-CA-C | ** | |||||||
22962081-G-T | 20800195-G-T | ** | |||||||
22896104-C-A | 20734218-C-A | ** | |||||||
22601929-C-A | 20440043-C-A | A15832 | ** | ||||||
22542460-T-A | 20380574-T-A | ** | |||||||
23642866-A-C | 21480980-A-C | ** | |||||||
22542392-C-T | 20380506-C-T | ** | |||||||
22305702-G-T | 20143816-G-T | DYZ19 | ** | ||||||
22305693-G-T | 20143807-G-T | DYZ19 | ** | ||||||
22305685-T-A | 20143799-T-A | DYZ19 | ** | ||||||
22262072-A-C | 20100186-A-C | DYZ19 | ** | ||||||
22207348-C-A | 20045462-C-A | ** | |||||||
22149820-C-A | 19987934-C-A | ** | |||||||
22100797-C-A | 19938911-C-A | ** | |||||||
22078059-C-A | 19916173-C-A | ** | |||||||
21840014-T-G | 19678128-T-G | ** | |||||||
21714165-C-A | 19552279-C-A | ** | |||||||
21691473-G-A | 19529587-G-A | ** | |||||||
21540952-C-A | 19379066-C-A | ** | |||||||
21534686-C-G | 19372800-C-G | ** | |||||||
23552687-C-A | 21390801-C-A | ** | |||||||
23741931-C-A | 21580045-C-A | ** | |||||||
21394282-C-A | 19232396-C-A | ** | |||||||
27757706-C-A | 25611559-C-A | P1_Y2 | ** | ||||||
56835203-C-A | ** | ||||||||
56825904-C-G | ** | ||||||||
28776121-C-A | 26629974-C-A | ** | |||||||
28768603-C-A | 26622456-C-A | ** | |||||||
28761329-G-C | 26615182-G-C | ** | |||||||
28745081-G-C | 26598934-G-C | ** | |||||||
28743065-A-C | 26596918-A-C | ** | |||||||
28743056-A-C | 26596909-A-C | ** | |||||||
28687897-A-G | 26541750-A-G | ** | |||||||
28687750-C-A | 26541603-C-A | ** | |||||||
28625807-T-A | 26479660-T-A | ** | |||||||
28537179-C-A | 26391032-C-A | ** | |||||||
28506163-A-T | 26360016-A-T | FTB38919 | ** | ||||||
27808479-G-T | 25662332-G-T | P1_Y2 | ** | ||||||
27521937-G-T | 25375790-G-T | P1_Y2 | ** | ||||||
23803719-C-A | 21641833-C-A | ** | |||||||
25880472-TG-T | 23734325-TG-T | P1_Y1 | ** | ||||||
24870808-A-G | 22724661-A-G | IR1_R | ** | ||||||
24575874-T-TTC | 22429727-T-TTC | P3_t2 | ** | ||||||
24540802-G-T | 22394655-G-T | P3_t2 | ** | ||||||
24540788-C-A | 22394641-C-A | P3_t2 | ** | ||||||
24540768-T-A | 22394621-T-A | P3_t2 | ** | ||||||
24475141-T-G | 22328994-T-G | ** | |||||||
24466393-G-A | 22320246-G-A | ** | |||||||
24409785-G-T | 22263638-G-T | ** | |||||||
24404197-G-A | 22258050-G-A | ** | |||||||
24384107-A-T | 22237960-A-T | ** | |||||||
24369474-C-A | 22223327-C-A | ** | |||||||
24265896-T-G | 22119749-T-G | P3_b1 | ** | ||||||
24240669-T-TA | 22094522-T-TA | P3_b1 | ** | ||||||
21405848-TA-T | 19243962-TA-T | ** | |||||||
21211533-G-C | 19049647-G-C | ** | |||||||
16763858-C-A | 14651978-C-A | ** | |||||||
17372165-C-G | 15260285-C-G | ** | |||||||
18222556-C-A | 16110676-C-A | ** | |||||||
17926490-T-A | 15814610-T-A | ** | |||||||
17913136-C-A | 15801256-C-A | ** | |||||||
17885912-G-T | 15774032-G-T | ** | |||||||
17876344-C-G | 15764464-C-G | ** | |||||||
17804533-G-A | 15692653-G-A | ** | |||||||
17648430-A-T | 15536550-A-T | ** | |||||||
17619474-C-A | 15507594-C-A | ** | |||||||
17518610-C-A | 15406730-C-A | ** | |||||||
17490335-C-A | 15378455-C-A | ** | |||||||
17482073-G-T | 15370193-G-T | ** | |||||||
17464770-G-T | 15352890-G-T | ** | |||||||
17399563-C-A | 15287683-C-A | ** | |||||||
17354818-C-A | 15242938-C-A | ** | |||||||
18389108-C-A | 16277228-C-A | P6_Gap | ** | ||||||
17335744-C-A | 15223864-C-A | ** | |||||||
17334076-C-A | 15222196-C-A | ** | |||||||
17306483-G-T | 15194603-G-T | ** | |||||||
17300197-T-C | 15188317-T-C | ** | |||||||
17277945-C-A | 15166065-C-A | ** | |||||||
17185210-C-A | 15073330-C-A | ** | |||||||
17157656-C-A | 15045776-C-A | ** | |||||||
17137137-C-A | 15025257-C-A | ** | |||||||
17073263-C-A | 14961383-C-A | ** | |||||||
10820406-T-C | ** | ||||||||
16993894-C-A | 14882014-C-A | ** | |||||||
16988450-AAATAAAAAAAAAATAAATATT-A | 14876570-AAATAAAAAAAAAATAAATATT-A | ** | |||||||
16941536-G-A | 14829656-G-A | ** | |||||||
16819954-C-A | 14708074-C-A | ** | |||||||
18253116-C-A | 16141236-C-A | ** | |||||||
18406559-C-A | 16294679-C-A | P6_Gap | ** | ||||||
21167276-C-A | 19005390-C-A | ** | |||||||
19459169-C-A | 17347289-C-A | ** | |||||||
21029407-A-G | 18867521-A-G | P4_Dst | ** | ||||||
20866436-T-G | 18704550-T-G | P4_Dst | ** | ||||||
20866418-C-A | 18704532-C-A | P4_Dst | ** | ||||||
20801633-T-A | 18639747-T-A | P4_Prx | ** | ||||||
20271086-G-T | 18109200-G-T | P5_Dst | ** | ||||||
20271047-G-T | 18109161-G-T | P5_Dst | ** | ||||||
20216527-T-G | 18054641-T-G | P5_Dst | ** | ||||||
20216511-A-T | 18054625-A-T | P5_Dst | ** | ||||||
20125666-G-T | 18013786-G-T | P5_Dst | ** | ||||||
19592223-C-A | 17480343-C-A | P5_Prx | ** | ||||||
19575980-T-C | 17464100-T-C | P5_Prx | ** | ||||||
19575878-T-G | 17463998-T-G | P5_Prx | ** | ||||||
19530517-G-C | 17418637-G-C | ** | |||||||
19504210-C-T | 17392330-C-T | ** | |||||||
19422836-C-A | 17310956-C-A | ** | |||||||
18425443-C-A | 16313563-C-A | P6_Gap | ** | ||||||
19378042-A-T | 17266162-A-T | ** | |||||||
19346707-C-A | 17234827-C-A | ** | |||||||
19307337-A-C | 17195457-A-C | ** | |||||||
19122199-C-A | 17010319-C-A | ** | |||||||
19048346-C-A | 16936466-C-A | ** | |||||||
18991834-T-G | 16879954-T-G | ** | |||||||
18966162-C-A | 16854282-C-A | ** | |||||||
18930728-C-A | 16818848-C-A | ** | |||||||
18924941-C-A | 16813061-C-A | ** | |||||||
18780128-C-A | 16668248-C-A | ** | |||||||
18738114-C-G | 16626234-C-G | 19×T | ** | ||||||
18625585-G-T | 16513705-G-T | ** | |||||||
18523112-C-T | 16411232-C-T | P6_Dst | ** | ||||||
18447690-C-A | 16335810-C-A | P6_Dst | ** | ||||||
10820420-C-T | ** | ||||||||
10968358-T-TC | ** | ||||||||
10820401-T-A | ** | ||||||||
14430327-C-A | 12309600-C-A | ** | |||||||
3511551-G-T | 3643510-G-T | ** | |||||||
3500516-C-A | 3632475-C-A | ** | |||||||
3491362-T-G | 3623321-T-G | ** | |||||||
3491356-T-G | 3623315-T-G | ** | |||||||
3286248-C-G | 3418207-C-G | ** | |||||||
3259629-G-T | 3391588-G-T | ** | |||||||
3229426-C-A | 3361385-C-A | ** | |||||||
3105218-C-A | 3237177-C-A | ** | |||||||
2986337-C-A | 3118296-C-A | ** | |||||||
2857115-A-G | 2989074-A-G | ** | |||||||
2795564-T-TA | 2927523-T-TA | ** | |||||||
13453329-C-T | 11297653-C-T | ** | |||||||
10986899-T-C | ** | ||||||||
3706714-A-T | 3838673-A-T | ** | |||||||
9354155-C-A | 9516546-C-A | ** | |||||||
10949452-T-C | ** | ||||||||
10801463-G-T | ** | ||||||||
10971903-A-ATTTCT | ** | ||||||||
10756914-C-A | ** | ||||||||
20125674-G-T | 18013794-G-T | P5_Dst | ** | ||||||
23005417-C-A | 20843531-C-A | ** | |||||||
10951233-G-T | ** | ||||||||
18173305-C-A | 16061425-C-A | ** | |||||||
10971967-C-A | ** | ||||||||
18872329-C-CT | 16760449-C-CT | 9×T | ** | ||||||
10036021-C-A | 10198412-C-A | ** | |||||||
10882046-A-G | ** | ||||||||
3612638-C-A | 3744597-C-A | ** | |||||||
3817845-T-A | 3949804-T-A | ** | |||||||
17372147-C-A | 15260267-C-A | ** | |||||||
5586777-G-T | 5718736-G-T | ** | |||||||
6631678-C-A | 6763637-C-A | ** | |||||||
6510629-C-A | 6642588-C-A | ** | |||||||
6486041-C-A | 6618000-C-A | ** | |||||||
6479752-G-T | 6611711-G-T | ** | |||||||
6244485-C-A | 6376444-C-A | IR3_Dst | 9×CA | ** | |||||
6206120-C-A | 6338079-C-A | IR3_Dst | ** | ||||||
6177573-G-T | 6309532-G-T | IR3_Dst | ** | ||||||
6177555-C-A | 6309514-C-A | IR3_Dst | ** | ||||||
6085523-G-T | 6217482-G-T | ** | |||||||
6085511-T-A | 6217470-T-A | ** | |||||||
6067539-G-T | 6199498-G-T | ** | |||||||
5873728-A-T | 6005687-A-T | ** | |||||||
5635117-T-C | 5767076-T-C | ** | |||||||
5583323-T-C | 5715282-T-C | ** | |||||||
3853998-C-A | 3985957-C-A | ** | |||||||
5561689-C-A | 5693648-C-A | ** | |||||||
5455091-T-A | 5587050-T-A | ** | |||||||
5446470-C-A | 5578429-C-A | ** | |||||||
5292800-C-A | 5424759-C-A | ** | |||||||
5288959-C-A | 5420918-C-A | FT1144 | ** | ||||||
4918937-C-A | 5050896-C-A | ** | |||||||
4887830-C-A | 5019789-C-A | ** | |||||||
4870010-G-T | 5001969-G-T | ** | |||||||
4594387-G-T | 4726346-G-T | ** | |||||||
4421428-T-C | 4553387-T-C | FT250788 | ** | ||||||
10813005-A-T | ** | ||||||||
4138931-G-T | 4270890-G-T | ** | |||||||
3869179-C-T | 4001138-C-T | ** | |||||||
10820369-T-C | ** | ||||||||
10923629-C-A | ** | ||||||||
6734509-A-T | 6866468-A-T | ** | |||||||
10924325-T-A | ** | ||||||||
10801468-G-T | ** | ||||||||
13469536-C-A | 11313860-C-A | ** | |||||||
10971909-T-G | ** | ||||||||
10866308-C-A | ** | ||||||||
15419178-C-A | 13307298-C-A | ** | |||||||
10993234-A-G | ** | ||||||||
10993204-A-T | ** | ||||||||
10866138-A-C | ** | ||||||||
10866127-C-T | ** | ||||||||
10686663-T-C | ** | ||||||||
14118245-G-GTT | 11997539-G-GTT | 13×T | ** | ||||||
18980624-C-A | 16868744-C-A | ** | |||||||
10924331-C-A | ** | ||||||||
6179627-C-A | 6311586-C-A | IR3_Dst | ** | ||||||
10757345-A-C | ** | ||||||||
8807613-C-A | 8939572-C-A | ** | |||||||
10757412-T-C | ** | ||||||||
27757816-C-A | 25611669-C-A | P1_Y2 | ** | ||||||
8389765-C-T | 8521724-C-T | ** | |||||||
10693097-C-T | ** | ||||||||
10693091-C-T | ** | ||||||||
22489697-A-C | 20327811-A-C | DYZ19 | *** | ** | |||||
13703321-G-GA | 11547645-G-GA | ** | |||||||
22305711-G-T | 20143825-G-T | ZS6084 | DYZ19 | ** | |||||
16014717-G-A | 13902837-G-A | CTS5097 | ** | ||||||
19845870-A-T | 17733990-A-T | P5_Prx | ** | ||||||
14077908-G-T | 11957202-G-T | FT335257 | ** | ||||||
2757670-T-C | 2889629-T-C | *** | ** | ||||||
10761160-T-A | ** | ||||||||
10888039-T-C | ** | ||||||||
10923626-C-T | ** | ||||||||
10824104-A-C | ** | ||||||||
10923623-C-G | ** | ||||||||
10984744-C-A | ** | ||||||||
10892543-C-CAGTCGGTTTA | ** | ||||||||
10689855-C-A | ** | ||||||||
14405821-C-A | 12285118-C-A | ** | |||||||
10789813-C-CATA | ** | ||||||||
10667716-C-A | ** | ||||||||
13642680-C-A | 11487004-C-A | ** | |||||||
21211537-C-A | 19049651-C-A | ** | |||||||
16849580-C-A | 14737700-C-A | ** | |||||||
10951253-TTCTTTTCA-T | ** | ||||||||
10844905-C-T | ** | ||||||||
13643911-C-A | 11488235-C-A | ** | |||||||
5957030-C-A | 6088989-C-A | ** | |||||||
8379672-C-A | 8511631-C-A | ** | |||||||
13940978-T-A | 11820272-T-A | ** | |||||||
10949437-G-C | ** | ||||||||
21919393-C-CT | 19757507-C-CT | 10×T | ** | ||||||
6366421-C-A | 6498380-C-A | ** | |||||||
22295282-C-A | 20133396-C-A | DYZ19 | ** | ||||||
10935508-A-T | ** | ||||||||
10993198-CACAG-C | ** | ||||||||
11027360-CCACTT-C | ** | ||||||||
14779486-G-GTT | 12667556-G-GTT | 11×T | ** | ||||||
10767661-C-CATTTG | ** | ||||||||
10967311-C-A | ** | ||||||||
28812360-G-C | 26666213-G-C | ** | |||||||
10686693-T-A | ** | ||||||||
6729703-G-T | 6861662-G-T | ** | |||||||
4240411-T-A | 4372370-T-A | ** | |||||||
6765970-C-A | 6897929-C-A | ** | |||||||
9438209-T-A | 9600600-T-A | ** | |||||||
10020221-C-A | 10182612-C-A | ** | |||||||
10020159-C-A | 10182550-C-A | ** | |||||||
9986293-G-A | 10148684-G-A | ** | |||||||
9974200-A-T | 10136591-A-T | ** | |||||||
9972238-C-A | 10134629-C-A | ** | |||||||
9959761-C-A | 10122152-C-A | ** | |||||||
9943457-G-T | 10105848-G-T | ** | |||||||
9941081-C-A | 10103472-C-A | ** | |||||||
9857282-C-A | 10019673-C-A | ** | |||||||
9516942-G-T | 9679333-G-T | ** | |||||||
9511443-T-G | 9673834-T-G | ** | |||||||
9453000-C-A | 9615391-C-A | ** | |||||||
9438230-A-T | 9600621-A-T | ** | |||||||
9424352-C-A | 9586743-C-A | ** | |||||||
10624482-G-C | ** | ||||||||
9398109-C-A | 9560500-C-A | ** | |||||||
9381096-A-T | 9543487-A-T | ** | |||||||
9178524-A-T | 9340915-A-T | ** | |||||||
9089201-C-A | 9251592-C-A | ** | |||||||
9109347-T-A | ** | ||||||||
8854181-C-T | 8986140-C-T | FT311241 | ** | ||||||
8812594-T-C | 8944553-T-C | ** | |||||||
8736977-C-A | 8868936-C-A | ** | |||||||
8710940-G-A | 8842899-G-A | ** | |||||||
8689377-C-A | 8821336-C-A | ** | |||||||
8672854-G-A | 8804813-G-A | ** | |||||||
8345915-T-A | 8477874-T-A | ** | |||||||
8333541-T-G | 8465500-T-G | ** | |||||||
8290576-G-A | 8422535-G-A | ** | |||||||
10624459-G-T | ** | ||||||||
10624486-T-A | ** | ||||||||
8170404-C-A | 8302363-C-A | ** | |||||||
10757380-C-T | ** | ||||||||
10797896-A-G | ** | ||||||||
10797887-T-C | ** | ||||||||
10774954-A-G | ** | ||||||||
10771251-T-A | ** | ||||||||
10771245-A-C | ** | ||||||||
10768690-T-TTCTAC | ** | ||||||||
10766579-CTCCAT-C | ** | ||||||||
10766522-CATTCA-C | ** | ||||||||
10766492-C-T | ** | ||||||||
10761148-C-T | ** | ||||||||
10761121-T-G | ** | ||||||||
10757407-T-TGCAAC | ** | ||||||||
10757382-T-G | ** | ||||||||
10757367-C-T | ** | ||||||||
10624497-A-C | ** | ||||||||
10757365-C-A | ** | ||||||||
10757344-A-G | ** | ||||||||
10757206-T-A | ** | ||||||||
10753734-C-A | ** | ||||||||
10748307-C-A | ** | ||||||||
10748282-C-CATCAG | ** | ||||||||
10692558-A-C | ** | ||||||||
10692517-C-T | ** | ||||||||
10692516-C-A | ** | ||||||||
10686695-G-A | ** | ||||||||
10668183-T-A | ** | ||||||||
10667023-C-CAGGTTAATCG | ** | ||||||||
10663687-C-T | ** | ||||||||
10658314-A-T | ** | ||||||||
8253628-C-A | 8385587-C-A | ** | |||||||
9438233-C-G | 9600624-C-G | ** | |||||||
56848679-G-T | ** | ||||||||
7084282-C-A | 7216241-C-A | ** | |||||||
7623497-C-A | 7755456-C-A | ** | |||||||
7536562-G-T | 7668521-G-T | ** | |||||||
7536552-G-C | 7668511-G-C | ** | |||||||
7028779-A-C | 7160738-A-C | ** | |||||||
7401080-A-G | 7533039-A-G | ** | |||||||
7401079-C-A | 7533038-C-A | ** | |||||||
7401078-C-T | 7533037-C-T | ** | |||||||
7401076-T-A | 7533035-T-A | ** | |||||||
7401057-G-C | 7533016-G-C | ** | |||||||
7377499-G-T | 7509458-G-T | ** | |||||||
6891978-C-A | 7023937-C-A | ** | |||||||
7094441-G-T | 7226400-G-T | ** | |||||||
7100716-T-A | 7232675-T-A | ** | |||||||
7112529-T-G | 7244488-T-G | ** | |||||||
7335568-G-C | 7467527-G-C | ** | |||||||
7128337-A-T | 7260296-A-T | ** | |||||||
7313681-T-A | 7445640-T-A | ** | |||||||
7142761-C-A | 7274720-C-A | ** | |||||||
7235278-G-C | 7367237-G-C | ** | |||||||
7305685-C-A | 7437644-C-A | ** | |||||||
7628197-C-G | 7760156-C-G | ** | |||||||
7313648-C-A | 7445607-C-A | ** | |||||||
6801046-A-T | 6933005-A-T | ** | |||||||
6807885-T-A | 6939844-T-A | ** | |||||||
8119355-G-T | 8251314-G-T | ** | |||||||
7984273-T-A | 8116232-T-A | ** | |||||||
8104823-C-A | 8236782-C-A | ** | |||||||
8016985-C-A | 8148944-C-A | ** | |||||||
8105657-G-T | 8237616-G-T | ** | |||||||
8016983-G-C | 8148942-G-C | ** | |||||||
23648241-G-T | 21486355-G-T | *** | |||||||
10803318-C-A | *** | ||||||||
28797953-G-T | 26651806-G-T | *** | |||||||
6124047-C-A | 6256006-C-A | *** | |||||||
15572586-GAA-G | 13460706-GAA-G | 9×A | *** | ||||||
25393687-A-C | 23247540-A-C | P2_r2 | *** | ||||||
56832496-GCACTC-G,GCACTCCACTC | 4×CACTC | *** | |||||||
23505248-C-A | 21343362-C-A | FTA42006 | *** | ||||||
56834449-CTTCCATTCCATTCCC-C,CTTCCATTCCATTCCT | *** | ||||||||
23393113-T-A | 21231227-T-A | *** | |||||||
10808625-C-G | *** | ||||||||
13697702-G-T | 11542026-G-T | A17857 | *** | ||||||
56842443-C-A | *** | ||||||||
23262371-C-A | 21100485-C-A | *** | |||||||
23255665-C-A | 21093779-C-A | *** | |||||||
56844122-A-G | *** | ||||||||
16244310-C-A | 14132430-C-A | *** | |||||||
23117695-C-A | 20955809-C-A | *** | |||||||
14771649-CTTTTT-C,CTTTT | 12659718-CTTTTT-C,CTTTT | 17×T | *** | ||||||
15306217-T-C | 13194319-T-C | *** | |||||||
23648245-A-T | 21486359-A-T | *** | |||||||
13846335-GAATGGAATGA-G | 11725629-GAATGGAATGA-G | *** | |||||||
15585195-A-AG | 13473315-A-AG | *** | |||||||
15849023-C-A | 13737143-C-A | *** | |||||||
8773858-CAAAAA-C | 8905817-CAAAAA-C | 16×A | *** | ||||||
13143388-G-A | 10632874-G-A | A14502 | *** | ||||||
7014302-C-A | 7146261-C-A | *** | |||||||
22283137-T-A | 20121251-T-A | DYZ19 | *** | ||||||
13699959-T-A | 11544283-T-A | *** | |||||||
7762095-T-TA | 7894054-T-TA | 9×A | *** | ||||||
24326954-TACACACAC-T | 22180807-TACACACAC-T | P3_t1 | 19×AC | *** | |||||
13699960-G-GA | 11544284-G-GA | *** | |||||||
15781589-C-A | 13669709-C-A | *** | |||||||
21084678-C-A | 18922792-C-A | *** | |||||||
24134934-C-T | 21988787-C-T | P3_b1 | *** | ||||||
23843120-A-G | 21681234-A-G | *** | |||||||
22950542-C-CT | 20788656-C-CT | 10×T | *** | ||||||
15897783-C-A | 13785903-C-A | *** | |||||||
18588726-TAA-T,TA | 16476846-TAA-T,TA | 16×A | *** | ||||||
7039001-C-A | 7170960-C-A | *** | |||||||
58976214-CCACTG-C | 56830067-CCACTG-C | *** | |||||||
28765526-G-A | 26619379-G-A | BY24467 | BY24888 | *** | |||||
14511558-GAA-G | 12399763-GAA-G | 11×A | *** | ||||||
15956857-G-T | 13844977-G-T | *** | |||||||
10039128-A-G | 10201519-A-G | *** | |||||||
15588715-CAAAA-C | 13476835-CAAAA-C | 14×A | *** | ||||||
28706808-C-A | 26560661-C-A | *** | |||||||
11030248-G-T | *** | ||||||||
16420760-C-A | 14308880-C-A | *** | |||||||
17353616-A-C | 15241736-A-C | *** | |||||||
3817816-C-A | 3949775-C-A | *** | |||||||
15721144-C-A | 13609264-C-A | *** | |||||||
17192470-C-A | 15080590-C-A | *** | |||||||
56835530-A-C,G | *** | ||||||||
14847004-CAAAAAA-C,CAAAAAAA | 12735070-CAAAAAA-C,CAAAAAAA | 20×A | *** | ||||||
17330090-C-A | 15218210-C-A | *** | |||||||
19409163-C-A | 17297283-C-A | *** | |||||||
23831252-CTTTT-C | 21669366-CTTTT-C | 26×T | *** | ||||||
19134098-C-A | 17022218-C-A | *** | |||||||
19124946-C-A | 17013066-C-A | *** | |||||||
13855392-C-A | 11734686-C-A | *** | |||||||
9008623-C-A | 9171014-C-A | *** | |||||||
7994099-C-A | 8126058-C-A | *** | |||||||
9481211-G-T | 9643602-G-T | *** | |||||||
8776814-C-A | 8908773-C-A | *** | |||||||
18865928-C-A | 16754048-C-A | *** | |||||||
18777454-C-A | 16665574-C-A | *** | |||||||
17427047-C-A | 15315167-C-A | *** | |||||||
14357635-C-A | 12236930-C-A | *** | |||||||
8644594-T-C | 8776553-T-C | *** | |||||||
8428944-CAAAA-C | 8560903-CAAAA-C | 25×A | *** | ||||||
18401981-C-A | 16290101-C-A | Y101909 | P6_Gap | *** | |||||
14577050-C-A | 12465250-C-A | *** | |||||||
18384490-CAAA-C,CA | 16272610-CAAA-C,CA | P6_Gap | 19×A | *** | |||||
14574078-G-T | 12462278-G-T | *** | |||||||
18246379-A-G | 16134499-A-G | *** | |||||||
56842454-A-C | *** | ||||||||
13460167-G-C | 11304491-G-C | *** | |||||||
7461754-GTT-G,GT | 7593713-GTT-G,GT | IR1_L | 23×T | *** | |||||
22652314-T-C | 20490428-T-C | *** | |||||||
10992305-C-G | *** | ||||||||
22564210-C-A | 20402324-C-A | *** | |||||||
22553219-C-A | 20391333-C-A | *** | |||||||
13469546-C-T | 11313870-C-T | *** | |||||||
13469556-A-T | 11313880-A-T | *** | |||||||
10658357-C-T | *** | ||||||||
22540635-G-T | 20378749-G-T | *** | |||||||
15200118-C-A | 13088204-C-A | *** | |||||||
7409901-TAA-T,TA | 7541860-TAA-T,TA | 19×A | *** | ||||||
10978855-G-T | *** | ||||||||
5242442-C-A | 5374401-C-A | *** | |||||||
15025192-C-A | 12913280-C-A | *** | |||||||
16743246-G-T | 14631366-G-T | *** | |||||||
21948864-T-C | 19786978-T-C | *** | |||||||
12786501-CTTT-C,CT | 16×T | *** | |||||||
10035968-C-A | 10198359-C-A | *** | |||||||
21738866-C-A | 19576980-C-A | *** | |||||||
21735302-C-A | 19573416-C-A | *** | |||||||
15607870-AT-A | 13495990-AT-A | 8×T | *** | ||||||
10999855-A-AT | *** | ||||||||
16866194-C-A | 14754314-C-A | *** | |||||||
21529815-C-A | 19367929-C-A | FT306293 | *** | ||||||
21508731-C-A | 19346845-C-A | *** | |||||||
10999873-C-CTATTCCGTAT | *** | ||||||||
16907188-A-AT | 14795308-A-AT | FGC63891 | 9×T | *** | |||||
21177506-C-A | 19015620-C-A | *** | |||||||
21167210-C-A | 19005324-C-A | *** | |||||||
17046256-T-C | 14934376-T-C | *** | |||||||
15145015-C-A | 13033102-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 502163 | 10060455 | 7249216 | 7321498 |
Kit: 502163 | 8946463 | 7334977 | 7263851 |
Used in age calculations | 10060455 | 7334977 | 7321498 |
Counts of SNPs | 7 | 7 |
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