Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > ~18337416-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
424831
BigY2
424831
25990220-G-A 23844073-G-A P1_Y1 ***A*
26002900-G-T 23856753-G-T P1_Y1 ***A*
22304476-G-C 20142590-G-C DYZ19 A*
2889538-G-C 3021497-G-C Y6642 YY++
6359262-G-C 6491221-G-C BY59775 ***+
8070478-C-G 8202437-C-G BY69739 YY++
9164206-A-G 9326597-A-G BY78690 ++
9389375-T-A 9551766-T-A BY79113 Y++
15475990-C-T 13364110-C-T Y36084 YY++
15787784-G-T 13675904-G-T BY104143 YY++
16095578-A-G 13983698-A-G BY105709 Y++
16221273-A-G 14109393-A-G BY106063 YY++
17409845-C-T 15297965-C-T BY114546 YY++
19474981-G-A 17363101-G-A BY129398 YY++
20064053-A-C 17952173-A-C BY177868 P5_Gap ++
21253622-T-C 19091736-T-C BY131441 YY++
22106335-A-T 19944449-A-T BY137669 YY++
22472152-C-G 20310266-C-G BY177845 DYZ19 ++
22486070-T-A 20324184-T-A BY224746 DYZ19 ***+
24873448-T-A 22727301-T-A BY177863 g1 ++
9981832-G-A 10144223-G-A BY82407 Y+
17383849-T-TGATGA 15271969-T-TGATGA 8×GATGA****
13686550-C-G 11530874-C-G DYZ17 ****
22238062-C-T 20076176-C-T DYZ19 ****
22466830-G-C 20304944-G-C BY9935 MZ144 DYZ19 ****
16205793-A-T 14093913-A-T **
19253014-G-T 17141134-G-T ****
8333480-TTTCTTCTTCTTC-T 8465439-TTTCTTCTTCTTC-T 31×TTC**
13585071-A-G 11429395-A-G Z9007 **
22489566-G-A 20327680-G-A BY171815 DYZ19 **
22232873-T-A 20070987-T-A DYZ19 **
14008778-G-A 11888072-G-A 25×A**
20804857-ATGTG-A 18642971-ATGTG-A P4_Gap 14×TG**
16437519-AAAAT-A 14325639-AAAAT-A 6×AAAT**
13860723-G-A 11740017-G-A DYZ17 **
7649090-C-A 7781049-C-A **
14008775-T-A 11888069-T-A **
15911522-G-A 13799642-G-A ****
17952640-CT-C 15840760-CT-C 8×T**
15412319-C-G 13300439-C-G **
17155824-C-A 15043944-C-A **
10841036-C-T **
2669072-G-T 2801031-G-T **
2729764-T-G 2861723-T-G **
2784400-A-T 2916359-A-T **
2803544-T-G 2935503-T-G FT6760 **
2845260-G-A 2977219-G-A **
2947666-C-A 3079625-C-A **
2970740-C-A 3102699-C-A **
3033166-C-A 3165125-C-A **
3209402-C-A 3341361-C-A **
3240699-G-T 3372658-G-T **
3345592-C-A 3477551-C-A **
3477887-C-A 3609846-C-A **
3501021-C-A 3632980-C-A **
3648639-A-G 3780598-A-G **
3693230-T-A 3825189-T-A **
3833344-C-A 3965303-C-A **
3833364-C-A 3965323-C-A **
4017137-C-A 4149096-C-A **
4081724-T-A 4213683-T-A **
4100309-A-T 4232268-A-T **
4100570-C-A 4232529-C-A **
4256839-C-A 4388798-C-A **
4262454-A-T 4394413-A-T **
4351541-C-A 4483500-C-A **
4460656-C-A 4592615-C-A **
4527424-C-A 4659383-C-A **
4575427-C-A 4707386-C-A **
4600138-C-A 4732097-C-A **
4685747-A-G 4817706-A-G **
4734367-G-T 4866326-G-T **
4749681-A-C 4881640-A-C **
4781080-G-T 4913039-G-T **
4810894-A-C 4942853-A-C **
4863444-C-T 4995403-C-T **
4979926-G-T 5111885-G-T **
5040907-A-T 5172866-A-T **
5059556-G-T 5191515-G-T **
5081108-C-A 5213067-C-A **
5125602-C-A 5257561-C-A **
5164514-G-T 5296473-G-T **
5165192-G-T 5297151-G-T **
5268742-TAAAA-T 5400701-TAAAA-T 19×A**
5313445-C-A 5445404-C-A **
5324357-G-T 5456316-G-T **
5405840-C-A 5537799-C-A **
5449443-C-T 5581402-C-T **
5535265-A-C 5667224-A-C **
5567816-G-T 5699775-G-T **
5586036-C-A 5717995-C-A **
5609569-T-C 5741528-T-C **
5674655-T-G 5806614-T-G **
5687611-T-A 5819570-T-A **
5687625-T-A 5819584-T-A **
5706788-G-T 5838747-G-T **
5967137-CA-C 6099096-CA-C **
6064428-G-T 6196387-G-T **
6115374-A-T 6247333-A-T **
6155568-G-T 6287527-G-T IR3_Dst **
6155571-G-T 6287530-G-T IR3_Dst **
6155592-G-T 6287551-G-T IR3_Dst **
6347558-C-A 6479517-C-A **
6353674-C-A 6485633-C-A **
6354282-G-T 6486241-G-T **
6475359-C-A 6607318-C-A **
6626796-T-G 6758755-T-G **
6646944-A-T 6778903-A-T **
6692768-T-G 6824727-T-G **
6692814-A-T 6824773-A-T **
6752204-C-A 6884163-C-A **
6918466-G-T 7050425-G-T **
6929468-G-T 7061427-G-T **
6998064-T-G 7130023-T-G **
7043928-C-A 7175887-C-A **
7044097-T-C 7176056-T-C **
7061121-T-A 7193080-T-A **
7097503-T-A 7229462-T-A **
7166984-C-A 7298943-C-A **
7167072-C-A 7299031-C-A **
7208262-G-T 7340221-G-T **
7224210-A-C 7356169-A-C **
7343670-T-C 7475629-T-C **
7360798-C-T 7492757-C-T **
7397702-T-G 7529661-T-G **
7433929-C-A 7565888-C-A **
7436491-C-A 7568450-C-A **
7713431-A-T 7845390-A-T **
7774766-C-T 7906725-C-T **
7866045-T-A 7998004-T-A **
7990548-G-T 8122507-G-T **
8080187-G-T 8212146-G-T **
8288866-T-A 8420825-T-A **
8296757-T-C 8428716-T-C **
8342853-T-A 8474812-T-A FT271835 **
8669932-T-A 8801891-T-A **
8850104-AAGCTGT-A 8982063-AAGCTGT-A **
9048018-C-A 9210409-C-A **
9078605-G-T 9240996-G-T **
9465240-T-C 9627631-T-C **
9507979-G-T 9670370-G-T **
9750101-T-TC 9912492-T-TC **
9761165-C-A 9923556-C-A **
9765864-C-A 9928255-C-A **
10661147-C-G **
10664725-C-T FT428546 **
10671532-T-G **
10676974-G-T **
10687597-T-C **
10744504-C-T **
10745785-T-G **
10746941-T-TCTGTA **
10761338-C-G **
10778132-G-T **
10781069-T-C **
10781070-T-A **
10782814-G-A **
10784668-C-T **
10787195-T-G **
10794769-T-C **
10796123-AT-A **
10800882-T-TTACGC **
10801092-G-C **
10804791-A-T **
10804800-C-T **
10804810-C-A **
10804824-C-G **
10808348-T-G **
10816356-C-A **
10816361-C-A **
10831641-C-A **
10833341-C-A **
10836172-CT-C **
10840576-C-A **
10847027-C-A **
10847504-C-A **
10860564-A-T **
10868111-T-G **
10875382-GATTCC-G **
10882266-A-T **
10887310-G-T **
10889710-C-A **
10898290-T-G **
10900034-A-T **
10900046-T-C **
10908364-C-G **
10908368-C-A **
10908370-A-T **
10908385-CAT-C **
10908394-G-A **
10911588-T-C **
10930317-TC-T **
10932877-T-C **
10932895-C-G **
10932930-C-T **
10932932-T-G **
10937790-C-T **
10937814-C-G **
10949051-T-C **
10951008-A-T **
10951070-C-G **
10951073-T-A **
10951075-C-A **
10965199-C-A **
10965220-A-T **
10965231-T-A **
10969849-C-A **
10974438-G-T FGC77114 **
10987738-C-T **
10989041-C-A **
10989055-T-G **
10989288-A-T **
10989292-A-C **
10989297-G-C **
10989306-G-C **
10989347-A-C **
10996508-C-G **
11004920-A-C **
11007818-T-G **
11008737-G-C **
11008770-T-C **
11008771-T-A **
11008772-T-C **
11014639-C-T **
11016889-T-C **
11016890-C-A **
11016915-C-A **
11016930-CACTAAACTCA-C **
11022106-C-A **
11022116-C-A **
11022118-T-C **
11022126-CA-C **
11022138-T-A **
13218989-A-T 11063313-A-T **
13225678-G-A 11070002-G-A **
13229769-C-A 11074093-C-A **
13236766-G-A 11081090-G-A **
13249586-C-A 11093910-C-A **
13307601-C-A 11151925-C-A **
13331448-A-C 11175772-A-C **
13460993-G-T 11305317-G-T **
13461053-A-T 11305377-A-T **
13466095-C-A 11310419-C-A **
13504810-T-A 11349134-T-A **
13565494-G-C 11409818-G-C **
13588821-C-A 11433145-C-A **
13643458-C-A 11487782-C-A **
13696365-A-T 11540689-A-T DYZ17 **
13696386-A-T 11540710-A-T DYZ17 **
13696390-A-T 11540714-A-T DYZ17 **
13696395-A-T 11540719-A-T DYZ17 **
13696431-A-T 11540755-A-T DYZ17 **
13705478-A-G 11549802-A-G DYZ17 **
13708878-T-A 11553202-T-A DYZ17 **
13718514-T-G 11562838-T-G DYZ17 **
13722723-G-T 11567047-G-T DYZ17 **
13722738-G-T 11567062-G-T DYZ17 **
13722761-C-A 11567085-C-A DYZ17 **
13722768-G-T 11567092-G-T DYZ17 **
13722783-G-A 11567107-G-A DYZ17 **
11646051-G-A DYZ17 **
11652229-T-G DYZ17 **
11676251-G-T DYZ17 **
13857793-A-G 11737087-A-G DYZ17 **
13874025-C-A 11753319-C-A **
13896219-T-G 11775513-T-G **
13926903-T-C 11806197-T-C **
14008768-C-A 11888062-C-A **
14069016-A-C 11948310-A-C **
14099968-C-A 11979262-C-A **
14100054-C-A 11979348-C-A **
14142325-C-G 12021619-C-G **
14142355-T-A 12021649-T-A **
14339438-A-T 12218733-A-T **
14395799-A-G 12275095-A-G **
14468184-T-C 12347453-T-C **
14526551-T-C 12414752-T-C **
14608177-A-C 12496379-A-C **
14701271-A-G 12589337-A-G **
15150797-G-T 13038884-G-T **
15201586-C-A 13089672-C-A **
15218579-C-A 13106665-C-A **
15285992-C-A 13174091-C-A **
15363970-G-A 13252090-G-A **
15369269-C-A 13257389-C-A **
15424332-C-A 13312452-C-A **
15443624-A-T 13331744-A-T **
15718006-G-A 13606126-G-A **
15742983-T-C 13631103-T-C **
15748479-A-C 13636599-A-C **
15888381-C-A 13776501-C-A **
15928718-A-G 13816838-A-G **
16024034-G-T 13912154-G-T **
16044310-C-A 13932430-C-A **
16052788-T-A 13940908-T-A **
16176998-C-CA 14065118-C-CA 9×A**
16205905-C-A 14094025-C-A **
16220940-A-C 14109060-A-C **
16243007-G-A 14131127-G-A **
16270469-C-A 14158589-C-A **
16344901-C-A 14233021-C-A **
16421197-C-A 14309317-C-A **
16421942-C-A 14310062-C-A **
16516436-C-A 14404556-C-A **
16572851-T-G 14460971-T-G **
16645847-G-T 14533967-G-T **
16667001-C-A 14555121-C-A **
16701736-C-A 14589856-C-A FGC55654 **
16705004-C-A 14593124-C-A **
17074779-A-C 14962899-A-C **
17074794-C-T 14962914-C-T **
17183395-C-A 15071515-C-A **
17244411-G-T 15132531-G-T **
17250880-C-A 15139000-C-A **
17374610-C-A 15262730-C-A **
17455643-A-C 15343763-A-C **
17455659-A-C 15343779-A-C **
17466954-G-T 15355074-G-T **
17505260-G-T 15393380-G-T **
17547563-T-C 15435683-T-C **
17597932-GA-G 15486052-GA-G 9×A**
17605202-C-A 15493322-C-A **
17616803-T-G 15504923-T-G **
17619274-C-A 15507394-C-A **
17644294-T-G 15532414-T-G **
17703287-G-C 15591407-G-C **
17703291-G-C 15591411-G-C **
17813484-A-C 15701604-A-C Z33163 AM00718 **
17826613-G-C 15714733-G-C **
17918712-A-T 15806832-A-T **
17929489-T-C 15817609-T-C **
18020829-T-A 15908949-T-A **
18042871-A-C 15930991-A-C **
18100947-A-C 15989067-A-C **
18354134-GA-G 16242254-GA-G P6_Prx **
18378944-A-C 16267064-A-C P6_Prx **
18472730-A-C 16360850-A-C P6_Dst **
18534117-C-A 16422237-C-A P6_Dst **
18819471-C-A 16707591-C-A **
18891059-A-AT 16779179-A-AT **
19071351-C-A 16959471-C-A **
19274828-C-A 17162948-C-A **
19330436-A-G 17218556-A-G **
19423740-C-T 17311860-C-T FT64343 **
19460699-C-G 17348819-C-G **
19576297-T-A 17464417-T-A P5_Prx **
19622040-C-A 17510160-C-A P5_Prx **
19646419-T-C 17534539-T-C P5_Prx **
19837276-C-A 17725396-C-A P5_Prx **
19837293-T-A 17725413-T-A P5_Prx **
19837302-G-T 17725422-G-T P5_Prx **
19837316-C-A 17725436-C-A P5_Prx **
19837318-T-A 17725438-T-A P5_Prx **
19837319-C-A 17725439-C-A P5_Prx **
19848151-A-AT 17736271-A-AT P5_Prx 8×T**
19954704-T-A 17842824-T-A P5_Prx **
19954730-T-A 17842850-T-A P5_Prx **
19955281-G-T 17843401-G-T P5_Prx **
20125705-G-T 18013825-G-T P5_Dst **
20213133-T-G 18051247-T-G P5_Dst **
20213138-C-A 18051252-C-A P5_Dst 6×CTT**
20556743-G-T 18394857-G-T P5_Dst **
20556752-G-T 18394866-G-T P5_Dst **
20556770-A-T 18394884-A-T P5_Dst **
20556782-A-T 18394896-A-T P5_Dst **
20556786-A-T 18394900-A-T P5_Dst **
20556791-C-A 18394905-C-A P5_Dst **
20579349-CA-C 18417463-CA-C P5_Dst **
20645843-C-A 18483957-C-A P4_Prx 29×T**
20695807-A-T 18533921-A-T P4_Prx **
20695828-A-T 18533942-A-T P4_Prx **
20695846-T-G 18533960-T-G P4_Prx **
20695864-A-T 18533978-A-T P4_Prx **
20695865-A-T 18533979-A-T P4_Prx **
20695871-C-G 18533985-C-G P4_Prx **
20774942-A-T 18613056-A-T BY212351 P4_Prx **
20982334-G-T 18820448-G-T P4_Dst **
21012312-T-A 18850426-T-A P4_Dst **
21279279-A-T 19117393-A-T **
21353175-T-G 19191289-T-G **
21353183-A-T 19191297-A-T **
21459961-C-A 19298075-C-A **
21464556-G-AT 19302670-G-AT **
21512392-C-A 19350506-C-A **
21556894-A-T 19395008-A-T **
21587057-T-G 19425171-T-G **
21587065-T-G 19425179-T-G **
21624589-C-A 19462703-C-A **
21974817-C-A 19812931-C-A **
22097171-C-A 19935285-C-A **
22101002-CAAAAAA-C 19939116-CAAAAAA-C 27×A**
22128830-A-G 19966944-A-G **
22170019-C-A 20008133-C-A **
22193108-T-A 20031222-T-A **
22193116-G-C 20031230-G-C **
22210583-TTTAAA-T 20048697-TTTAAA-T **
22529703-T-A 20367817-T-A **
22529705-C-A 20367819-C-A **
22634989-C-A 20473103-C-A **
22703622-AAAAG-A 20541736-AAAAG-A **
22786978-C-A 20625092-C-A **
22842280-TG-T 20680394-TG-T **
23006634-C-A 20844748-C-A **
23007118-T-G 20845232-T-G **
23137020-A-C 20975134-A-C **
23144242-A-T 20982356-A-T FTB34475 **
23355350-C-A 21193464-C-A **
23447459-A-T 21285573-A-T **
21752695-G-T **
24244716-G-T 22098569-G-T P3_b1 **
24250655-A-T 22104508-A-T P3_b1 **
24292933-T-A 22146786-T-A P3_t1 **
24450434-G-T 22304287-G-T **
25496470-A-G 23350323-A-G P2_r2 **
25872163-T-A 23726016-T-A P1_Y1 **
25995094-G-C 23848947-G-C P1_Y1 **
26015325-C-CAA 23869178-C-CAA P1_Y1 **
26030121-A-T 23883974-A-T P1_Y1 **
26030131-A-T 23883984-A-T P1_Y1 **
26030137-C-A 23883990-C-A P1_Y1 **
26991332-G-T 24845185-G-T P1_r4 **
27499362-G-A 25353215-G-A P1_Y2 **
27647588-G-T 25501441-G-T P1_Y2 **
27719842-G-T 25573695-G-T P1_Y2 **
27823613-T-G 25677466-T-G P1_Y2 **
27961588-A-T 25815441-A-T P1_Y2 **
27961596-A-T 25815449-A-T P1_Y2 **
27961605-A-T 25815458-A-T P1_Y2 **
27961622-G-T 25815475-G-T P1_Y2 **
27961626-A-T 25815479-A-T P1_Y2 **
27961628-A-T 25815481-A-T P1_Y2 **
27961638-A-T 25815491-A-T P1_Y2 **
28311304-G-A 26165157-G-A P1_b4 **
28311310-A-T 26165163-A-T P1_b4 **
28311330-A-T 26165183-A-T P1_b4 **
28508129-C-A 26361982-C-A **
28521117-G-A 26374970-G-A **
28558659-T-G 26412512-T-G **
28688441-G-T 26542294-G-T **
28700562-C-A 26554415-C-A **
28760144-C-A 26613997-C-A **
28776454-G-T 26630307-G-T **
28779663-A-T 26633516-A-T **
28808530-T-A 26662383-T-A **
28808615-G-C 26662468-G-C **
28818204-A-C 26672057-A-C **
28818209-A-T 26672062-A-T **
28818350-G-T 26672203-G-T **
28818364-T-G 26672217-T-G **
28818367-A-G 26672220-A-G **
56750043-A-C **
56839531-G-T **
56844534-A-T **
56845557-A-T **
56849916-G-T **
34131-A-T **
13647474-T-A 11491798-T-A DYZ17 ***
13473863-C-A 11318187-C-A ***
13659397-G-A 11503721-G-A DYZ17 ***
13458056-CTTTCA-C,CATTCC 11302380-CTTTCA-C,CATTCC ***
58982176-G-A 56836029-G-A ***
13322740-C-A 11167064-C-A ***
13459358-T-A 11303682-T-A ***
13860748-T-A 11740042-T-A DYZ17 ***
13302314-G-A 11146638-G-A ***
13804094-T-A 11683388-T-A DYZ17 ***
13863660-A-T 11742954-A-T DYZ17 ***
13447323-AC-A 11291647-AC-A ***
13447325-TCCACTCCAC-T 11291649-TCCACTCCAC-T ***
13828831-G-A 11708125-G-A DYZ17 ***
10017362-T-A 10179753-T-A ***
13310621-C-A 11154945-C-A ***
13310622-C-A 11154946-C-A ***
13845300-T-C 11724594-T-C DYZ17 ***
28786293-A-T 26640146-A-T ***
13856962-A-G 11736256-A-G DYZ17 ***
13857010-T-A 11736304-T-A DYZ17 ***
13862109-T-A 11741403-T-A DYZ17 ***
10017355-G-T 10179746-G-T ***
58982252-G-C,T 56836105-G-C,T ***
13826504-T-TG 11705798-T-TG DYZ17 ***
13654010-G-A 11498334-G-A FT357252 DYZ17 ***
13138397-CCATT-C 10627883-CCATT-C ***
10017354-T-C 10179745-T-C ***
23654353-T-G 21492467-T-G FTB18990 ***
13714552-A-C 11558876-A-C DYZ17 ***
13824788-TTAAA-GGAAT 11704082-TTAAA-GGAAT DYZ17 ***
19960855-A-G 17848975-A-G P5_Prx ***
25107004-T-A 22960857-T-A g1 ***
26589677-T-G 24443530-T-G P1_g2 ***
58831128-G-C 56759743-C-G ***
19523494-C-A 17411614-C-A ***
2773691-TAAA-T,TA 2905650-TAAA-T,TA 19×A***
3093344-C-A 3225303-C-A ***
4133417-C-A 4265376-C-A ***
4769515-C-A 4901474-C-A ***
5454891-C-A 5586850-C-A ***
6090764-AT-A,ATT 6222723-AT-A,ATT 11×T***
9944185-T-C 10106576-T-C ***
9956364-TAAA-T,TAA 10118755-TAAA-T,TAA 16×A***
10667169-C-A ***
10688041-A-C ***
10793216-A-G ***
10958753-G-T ***
10962863-C-A ***
10983662-C-A ***
10985230-A-T ***
11015902-C-G ***
13461791-G-A 11306115-G-A ***
13466068-G-T 11310392-G-T ***
11648112-A-G DYZ17 ***
13962042-CTTT-C,CTT 11841336-CTTT-C,CTT 28×T***
14181347-G-T 12060641-G-T FGC58573 ***
14847004-CAAA-C,CA 12735070-CAAA-C,CA 20×A***
15305796-C-A 13193895-C-A FTA4912 ***
15593274-CAAAAA-C,CA 13481394-CAAAAA-C,CA 23×A***
18738674-C-A 16626794-C-A ***
18933579-CTGT-C 16821699-CTGT-C ***
21082242-AAAAG-A 18920356-AAAAG-A ***
21373609-C-A 19211723-C-A ***
21818141-C-A 19656255-C-A ***
22164547-CAAA-C,CA 20002661-CAAA-C,CA 19×A***
22487819-C-A 20325933-C-A DYZ19 ***
56826006-AGTTCCTTCCATTCGAG-A,AGTACATTCCATTCGAA ***
56833645-T-A ***
58980929-T-C 56834782-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.