Hamilton

FTDNA: 176000, BigY2: 176000

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > L1403 > L1402 > A818 > ~26273785-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
176000		BigY2
176000
13464567-G-C 11308891-G-C ***A*
20727393-T-C 18565507-T-C P4_Prx ***A*
25918482-G-A 23772335-G-A P1_Y1 ***A*
26048073-A-T 23901926-A-T P1_Y1 ***A*
13698528-G-T 11542852-G-T DYZ17 A*
13712772-T-A 11557096-T-A DYZ17 A*
13868023-A-T 11747317-A-T DYZ17 A*
7912538-C-T 8044497-C-T BY68704 YY++
8001050-C-A 8133009-C-A BY69305 YY++
8617346-G-C 8749305-G-C BY74619 YY++
15782241-C-T 13670361-C-T BY104071 YY++
22471630-C-T 20309744-C-T FT272347 DYZ19 ++
20752292-G-A 18590406-G-A P4_Prx ****
13487537-A-C 11331861-A-C **
13853705-G-A 11732999-G-A DYZ17 **
13853717-C-G 11733011-C-G DYZ17 **
13823335-C-A 11702629-C-A FGC61494 DYZ17 **
16767170-T-C 14655290-T-C F2256 ****
23011008-G-A 20849122-G-A PR7223 **
7938177-G-A 8070136-G-A **
22755648-G-A 20593762-G-A Y29421 **
24447123-A-G 22300976-A-G FT303047 6×AAAG**
13853695-G-A 11732989-G-A BY91508 DYZ17 **
24447121-G-A 22300974-G-A **
18923983-GAAA-G 16812103-GAAA-G 22×A**
22696957-AT-A 20535071-AT-A 9×T**
7290457-G-A 7422416-G-A PR4771 ****
14529537-C-G 12417738-C-G ****
22498684-T-C 20336798-T-C DYZ19 **
13853730-A-C 11733024-A-C DYZ17 **
24884168-C-CTT 22738021-C-CTT g1 20×T**
10658555-T-G **
4088212-T-G 4220171-T-G **
22687181-C-A 20525295-C-A **
10772626-C-T **
10954036-T-C **
10961120-G-C **
10683597-C-T **
10787284-G-T **
10795858-T-C **
10795860-C-A **
11643758-G-C DYZ17 **
23881437-C-A 21719551-C-A **
10846811-C-G **
8333620-TCTC-T 8465579-TCTC-T **
19760635-C-A 17648755-C-A P5_Prx **
6867675-C-A 6999634-C-A **
34292-C-A **
8661393-C-A 8793352-C-A **
5842415-C-A 5974374-C-A **
21244684-C-A 19082798-C-A **
8117200-G-T 8249159-G-T **
19999024-C-A 17887144-C-A P5_Prx **
7257202-C-A 7389161-C-A **
7360405-C-A 7492364-C-A **
56822765-G-T **
10772451-C-A **
9427684-G-T 9590075-G-T **
13465418-C-A 11309742-C-A **
17951702-C-A 15839822-C-A **
10663602-C-A **
14610734-C-A 12498936-C-A **
14079527-C-A 11958821-C-A **
10939057-A-T **
56771171-A-G **
10683611-A-ATTCT **
11643725-A-C DYZ17 **
10991207-C-T **
22542450-C-A 20380564-C-A **
10764636-A-G **
10683589-C-T **
6191115-A-AC 6323074-A-AC IR3_Dst **
56771128-G-A **
9361090-ACCCC-A 9523481-ACCCC-A **
14115010-C-A 11994304-C-A **
14216293-C-A 12095587-C-A **
7226943-C-A 7358902-C-A **
56831101-C-A **
10934277-A-C **
14315408-ATTTT-A 12194702-ATTTT-A 16×T**
16422104-C-T 14310224-C-T **
10033587-C-A 10195978-C-A **
10949956-A-T **
10989115-T-G **
22824914-C-A 20663028-C-A **
10972749-G-T **
28521578-C-A 26375431-C-A FT103389 **
7166809-C-A 7298768-C-A **
3164494-C-A 3296453-C-A **
2669110-A-G 2801069-A-G **
2707039-G-T 2838998-G-T **
2738671-C-A 2870630-C-A **
2746654-C-T 2878613-C-T BY186181 **
2816938-C-A 2948897-C-A **
2960095-G-T 3092054-G-T 9×A**
3560289-T-A 3692248-T-A **
3593720-C-T 3725679-C-T **
3593721-A-G 3725680-A-G **
3626263-A-C 3758222-A-C **
3626787-G-T 3758746-G-T **
3675065-G-T 3807024-G-T FT72840 **
3734938-A-G 3866897-A-G **
3873056-T-C 4005015-T-C **
3873059-A-G 4005018-A-G **
3873075-C-T 4005034-C-T **
3873080-T-C 4005039-T-C **
3873081-G-A 4005040-G-A **
4374488-C-A 4506447-C-A **
4503082-G-T 4635041-G-T **
4729346-CTTT-C 4861305-CTTT-C 12×T**
4780088-C-A 4912047-C-A **
4866369-C-A 4998328-C-A **
5189961-C-A 5321920-C-A FT28294 **
5368463-G-T 5500422-G-T **
5524393-C-A 5656352-C-A **
5613049-C-A 5745008-C-A **
5968210-T-A 6100169-T-A **
6096811-A-C 6228770-A-C **
6117938-C-A 6249897-C-A **
6242185-C-A 6374144-C-A IR3_Dst **
6313373-G-C 6445332-G-C IR3_Dst **
6313386-G-A 6445345-G-A IR3_Dst **
6332352-C-A 6464311-C-A IR3_Dst **
6370711-A-T 6502670-A-T **
6697279-C-A 6829238-C-A **
6814652-A-C 6946611-A-C **
6830852-C-A 6962811-C-A **
6886638-G-T 7018597-G-T **
6964026-G-A 7095985-G-A **
6982467-C-A 7114426-C-A **
7075088-C-A 7207047-C-A **
7172060-C-T 7304019-C-T **
7207439-C-A 7339398-C-A **
7247644-A-G 7379603-A-G **
7270547-C-A 7402506-C-A **
7271220-CT-C 7403179-CT-C **
7312048-C-A 7444007-C-A **
7312103-C-A 7444062-C-A **
7386871-G-C 7518830-G-C **
7399432-G-T 7531391-G-T **
7461754-G-GTTT 7593713-G-GTTT IR1_L 23×T**
7619099-T-A 7751058-T-A **
7681924-T-TAA 7813883-T-TAA 14×A**
7706258-C-A 7838217-C-A **
7706571-C-A 7838530-C-A **
7709276-C-A 7841235-C-A **
7855947-C-A 7987906-C-A **
7938180-C-A 8070139-C-A **
8061722-G-T 8193681-G-T **
8100572-A-G 8232531-A-G **
8130626-C-A 8262585-C-A **
8162084-CA-C 8294043-CA-C **
8190014-T-G 8321973-T-G **
8221364-A-C 8353323-A-C **
8282296-C-A 8414255-C-A **
8384830-G-T 8516789-G-T **
8385799-A-C 8517758-A-C **
8385803-C-G 8517762-C-G **
8390153-AG-A 8522112-AG-A **
8434624-C-A 8566583-C-A **
8660180-C-A 8792139-C-A **
8742170-C-A 8874129-C-A **
8799893-G-A 8931852-G-A **
8853935-C-A 8985894-C-A **
9029857-T-G 9192248-T-G **
9029861-C-G 9192252-C-G **
9111627-G-T 9274018-G-T **
9112667-C-A 9275058-C-A **
9153442-C-A 9315833-C-A **
9364128-AC-A 9526519-AC-A **
9372469-C-A 9534860-C-A **
9714159-C-A 9876550-C-A IR3_Prx **
10652955-C-A **
10659483-G-C **
10682514-T-G **
10750714-C-A **
10826877-T-G **
10826885-A-C **
10828976-T-C **
10884002-C-A **
10884984-C-A **
10884985-TGCAC-T **
10889770-C-CTCTCACTTTA **
10921448-CTCCATTCCACACCACTCCATTCCACTCAACTCCAT-C **
10921473-C-T FT172128 **
10921478-C-G **
10949965-C-T **
10954042-A-T **
10961098-T-C **
10987831-T-A **
10997893-C-A **
13435432-C-G 11279756-C-G **
13453737-C-G 11298061-C-G FT443761 **
13454274-T-G 11298598-T-G **
13465959-C-T 11310283-C-T **
13487535-G-C 11331859-G-C **
13487536-A-G 11331860-A-G **
13487549-T-G 11331873-T-G **
13571051-CAG-T 11415375-CAG-T **
13571065-A-G 11415389-A-G **
13571069-T-C 11415393-T-C **
13571541-C-A 11415865-C-A **
13678231-G-A 11522555-G-A BY210879 DYZ17 **
13714520-A-C 11558844-A-C DYZ17 **
13714521-G-T 11558845-G-T DYZ17 **
11643771-ATG-A DYZ17 **
13815025-A-G 11694319-A-G DYZ17 **
13853700-A-C 11732994-A-C DYZ17 **
13857362-A-T 11736656-A-T DYZ17 **
14022854-C-A 11902148-C-A **
14042025-A-G 11921319-A-G **
14054223-C-T 11933517-C-T **
14115857-C-A 11995151-C-A **
14125792-T-A 12005086-T-A **
14379487-C-A 12258783-C-A **
14453671-C-A 12332944-C-A **
14454328-C-A 12333601-C-A **
14497558-A-G 12385763-A-G **
14498974-G-T 12387179-G-T **
14546298-C-A 12434499-C-A **
14572088-C-A 12460288-C-A **
14589971-A-G 12478171-A-G **
14696473-C-A 12584539-C-A **
14722557-G-T 12610625-G-T **
14722561-T-C 12610629-T-C **
14722562-G-A 12610630-G-A **
14723962-C-A 12612030-C-A **
14750219-A-C 12638288-A-C **
14764855-C-A 12652924-C-A **
14772870-C-A 12660939-C-A **
14816105-C-A 12704176-C-A **
14826539-G-T 12714606-G-T **
14992304-C-A 12880389-C-A **
15027527-G-T 12915615-G-T **
15027552-T-A 12915640-T-A **
15140811-G-A 13028898-G-A **
15145051-T-A 13033138-T-A **
15156933-G-A 13045020-G-A **
15183565-G-T 13071651-G-T **
15220735-T-C 13108821-T-C **
15264765-G-T 13152854-G-T **
15324318-GC-T 13212436-GC-T **
15391496-C-A 13279616-C-A **
15425220-C-A 13313340-C-A **
15446261-C-A 13334381-C-A **
15460447-C-A 13348567-C-A **
15477261-C-A 13365381-C-A **
15621196-C-A 13509316-C-A **
15662842-T-A 13550962-T-A **
15696353-C-A 13584473-C-A **
15867971-T-A 13756091-T-A **
15936186-C-A 13824306-C-A **
16008128-T-C 13896248-T-C **
16027950-A-G 13916070-A-G **
16032499-C-A 13920619-C-A **
16047272-C-A 13935392-C-A **
16047277-C-A 13935397-C-A **
16050541-G-A 13938661-G-A **
16064851-G-T 13952971-G-T **
16134570-A-T 14022690-A-T P8_Spc **
16188818-C-A 14076938-C-A **
16277208-G-T 14165328-G-T **
16281747-C-A 14169867-C-A **
16474512-A-G 14362632-A-G **
16539801-C-T 14427921-C-T FT1941 **
16554624-C-A 14442744-C-A **
16569441-C-A 14457561-C-A **
16656660-T-A 14544780-T-A **
16736630-T-A 14624750-T-A **
16736868-C-A 14624988-C-A **
16796965-C-A 14685085-C-A **
16841905-C-A 14730025-C-A **
16913213-A-G 14801333-A-G **
17045035-C-A 14933155-C-A **
17074078-C-A 14962198-C-A **
17264774-A-C 15152894-A-C **
17380155-ACGCCACC-A 15268275-ACGCCACC-A **
17448715-C-A 15336835-C-A **
17466442-C-A 15354562-C-A **
17493082-C-A 15381202-C-A **
17668522-T-G 15556642-T-G **
17718131-C-G 15606251-C-G **
17842429-C-A 15730549-C-A **
17842434-C-A 15730554-C-A BY117724 **
17860046-G-T 15748166-G-T **
17894053-C-A 15782173-C-A **
17923514-A-T 15811634-A-T **
17951662-T-A 15839782-T-A **
17951691-T-A 15839811-T-A **
18022151-C-A 15910271-C-A **
18030743-A-C 15918863-A-C **
18082909-T-C 15971029-T-C **
18128107-C-A 16016227-C-A **
18172534-C-A 16060654-C-A **
18179551-C-A 16067671-C-A **
18222067-G-T 16110187-G-T **
18260723-T-G 16148843-T-G **
18263526-A-G 16151646-A-G **
18310238-T-A 16198358-T-A P6_Prx **
18317493-A-T 16205613-A-T P6_Prx **
18398532-T-C 16286652-T-C P6_Gap **
18420531-A-G 16308651-A-G P6_Gap **
18491602-A-C 16379722-A-C P6_Dst **
18597726-C-A 16485846-C-A **
18677549-T-A 16565669-T-A **
18769547-T-A 16657667-T-A **
18781973-C-A 16670093-C-A **
18832823-C-A 16720943-C-A **
18843027-C-A 16731147-C-A **
18903051-C-T 16791171-C-T **
19077098-C-A 16965218-C-A **
19346384-T-A 17234504-T-A **
19356792-G-T 17244912-G-T **
19399806-A-G 17287926-A-G **
19497669-C-A 17385789-C-A **
19500513-A-G 17388633-A-G **
19510349-A-G 17398469-A-G **
19513163-TG-T 17401283-TG-T **
19528248-C-A 17416368-C-A **
19597207-T-TATA 17485327-T-TATA P5_Prx **
19817206-A-AT 17705326-A-AT P5_Prx **
19817228-A-T 17705348-A-T P5_Prx **
19936397-T-A 17824517-T-A P5_Prx **
19936406-G-C 17824526-G-C P5_Prx **
19936419-T-A 17824539-T-A P5_Prx **
19936424-C-A 17824544-C-A P5_Prx **
19936432-T-A 17824552-T-A P5_Prx **
19966623-G-T 17854743-G-T P5_Prx **
19999052-C-A 17887172-C-A P5_Prx **
20229328-A-T 18067442-A-T P5_Dst **
20241116-A-G 18079230-A-G P5_Dst **
20611359-G-T 18449473-G-T P5_Dst **
20674144-G-T 18512258-G-T P4_Prx **
20674175-A-T 18512289-A-T P4_Prx **
20674186-T-C 18512300-T-C P4_Prx **
20674201-G-C 18512315-G-C P4_Prx **
20692661-A-T 18530775-A-T P4_Prx **
20851785-C-A 18689899-C-A P4_Dst **
20851792-G-T 18689906-G-T P4_Dst **
20851797-C-A 18689911-C-A P4_Dst **
20851808-T-A 18689922-T-A P4_Dst **
20851835-C-A 18689949-C-A P4_Dst **
21028016-C-A 18866130-C-A P4_Dst **
21047750-C-A 18885864-C-A **
21091321-C-A 18929435-C-A **
21100393-A-T 18938507-A-T **
21152577-C-A 18990691-C-A **
21235737-C-A 19073851-C-A **
21270036-C-A 19108150-C-A **
21345056-C-A 19183170-C-A **
21413934-C-A 19252048-C-A **
21532596-T-A 19370710-T-A **
21559174-C-A 19397288-C-A **
21560374-A-T 19398488-A-T FT339237 **
21661580-C-G 19499694-C-G **
21720956-C-G 19559070-C-G **
22044230-G-C 19882344-G-C **
22044238-T-A 19882352-T-A **
22055212-C-G 19893326-C-G **
22076410-G-A 19914524-G-A **
22079460-C-T 19917574-C-T **
22080394-G-C 19918508-G-C **
22162561-T-C 20000675-T-C **
22237202-G-T 20075316-G-T DYZ19 **
22253253-C-A 20091367-C-A DYZ19 **
22310591-T-A 20148705-T-A DYZ19 **
22310626-T-A 20148740-T-A DYZ19 **
22310643-T-A 20148757-T-A DYZ19 **
22726646-A-G 20564760-A-G **
22774159-G-A 20612273-G-A **
22793020-G-C 20631134-G-C **
22796443-C-A 20634557-C-A **
22844987-GGAAATTGTTTATAACAGTCTCTCTTAAAAAAAAAAGTTATAT-G 20683101-GGAAATTGTTTATAACAGTCTCTCTTAAAAAAAAAAGTTATAT-G **
22851200-C-A 20689314-C-A **
22869070-C-A 20707184-C-A **
22872009-A-T 20710123-A-T **
22994599-C-A 20832713-C-A **
23007422-ATTGTATC-A 20845536-ATTGTATC-A **
23059654-A-C 20897768-A-C **
23074700-C-A 20912814-C-A **
23127048-T-G 20965162-T-G **
23145834-A-C 20983948-A-C **
23181557-C-A 21019671-C-A **
23293931-C-A 21132045-C-A BY144378 **
23368662-A-T 21206776-A-T **
23394699-C-A 21232813-C-A **
23425598-C-G 21263712-C-G **
23425604-G-C 21263718-G-C **
23450745-G-A 21288859-G-A **
23495481-C-A 21333595-C-A **
23576226-C-A 21414340-C-A **
23576689-T-A 21414803-T-A **
23576692-A-T 21414806-A-T **
23576723-C-G 21414837-C-G **
23579185-C-A 21417299-C-A **
23870866-GACAAA-G 21708980-GACAAA-G **
23881407-C-A 21719521-C-A **
23881445-C-A 21719559-C-A **
23898286-G-T 21736400-G-T **
23983465-T-G 21837318-T-G **
24182435-A-T 22036288-A-T P3_b1 **
24182477-A-T 22036330-A-T P3_b1 **
24405765-C-A 22259618-C-A **
24407576-A-C 22261429-A-C **
24876955-G-T 22730808-G-T g1 **
25412787-G-T 23266640-G-T P2_r2 **
25412805-G-T 23266658-G-T P2_r2 **
25412841-C-A 23266694-C-A P2_r2 **
25412854-C-A 23266707-C-A P2_r2 **
25530538-C-A 23384391-C-A P1_gr1 **
26018420-T-G 23872273-T-G P1_Y1 **
26018448-G-T 23872301-G-T P1_Y1 **
26018454-C-T 23872307-C-T P1_Y1 **
26018467-C-A 23872320-C-A P1_Y1 **
26151123-T-A 24004976-T-A P1_Y1 **
26151140-T-A 24004993-T-A P1_Y1 **
26151141-T-A 24004994-T-A P1_Y1 **
26201537-T-C 24055390-T-C P1_Y1 **
26248345-A-C 24102198-A-C P1_Y1 **
26991265-G-T 24845118-G-T P1_r4 **
27336146-T-G 25189999-T-G P1_g3 **
27810222-A-T 25664075-A-T P1_Y2 **
28076521-TC-T 25930374-TC-T P1_Y2 **
28370029-G-GAA 26223882-G-GAA P1_gr2 **
28525892-G-T 26379745-G-T **
28687754-C-A 26541607-C-A **
28711591-C-A 26565444-C-A **
28772800-G-A 26626653-G-A FGC74499 **
56771131-A-AGGG **
56827469-T-G **
56832906-C-A **
56839534-T-G **
56849138-A-T **
56849167-C-T **
56849174-TG-T **
56872974-C-T **
8141-C-A **
8171-G-T **
13853733-G-A 11733027-G-A DYZ17 ***
22250196-A-C 20088310-A-C DYZ19 ***
13858045-C-T 11737339-C-T FTB69900 DYZ17 ***
13257877-G-A 11102201-G-A ***
9935110-T-C 10097501-T-C ***
10007100-C-T 10169491-C-T ***
10007103-C-T 10169494-C-T ***
10007119-C-G 10169510-C-G ***
13651316-T-A 11495640-T-A DYZ17 ***
20696701-T-C 18534815-T-C P4_Prx ***
22250278-G-T 20088392-G-T DYZ19 ***
22484966-T-A 20323080-T-A DYZ19 ***
13483044-C-T 11327368-C-T ***
13483060-TA-T 11327384-TA-T ***
13483063-G-A 11327387-G-A BY86112 ***
22424000-T-G 20262114-T-G DYZ19 ***
10018504-G-A 10180895-G-A ***
10010835-A-G 10173226-A-G ***
10010850-C-T 10173241-C-T ***
13803143-G-A 11682437-G-A FT287118 DYZ17 ***
13453258-C-T 11297582-C-T ***
22256797-A-G 20094911-A-G BY214475 DYZ19 ***
22273020-C-A 20111134-C-A PR4692BY14277 DYZ19 ***
13143749-C-T 10633235-C-T A8561 ***
6134446-A-G 6266405-A-G ***
13453174-C-G 11297498-C-G ***
13478735-C-A 11323059-C-A BY86010 ***
22506925-C-G 20345039-C-G DYZ19 ***
7587994-G-GA 7719953-G-GA 10×A***
13846305-G-GA 11725599-G-GA DYZ17 ***
13488293-G-A 11332617-G-A ***
13716627-T-A 11560951-T-A DYZ17 ***
13810894-G-C 11690188-G-C DYZ17 ***
22315764-A-C 20153878-A-C BY25349 DYZ19 ***
22424006-T-C 20262120-T-C DYZ19 ***
13475353-A-G 11319677-A-G ***
10024533-TC-CC,T 10186924-TC-CC,T ***
23679316-TATA-T 21517430-TATA-T ***
22250313-C-A 20088427-C-A DYZ19 ***
13651314-G-A 11495638-G-A DYZ17 ***
13600228-C-A,G 11444552-C-A,G ***
13433424-TAAA-T,TAA 11277748-TAAA-T,TAA 10×A***
22441052-C-G 20279166-C-G BY14659BY218962 DYZ19 ***
13453175-A-C 11297499-A-C ***
13464539-C-T 11308863-C-T ******
22253016-C-G 20091130-C-G DYZ19 ***
22509104-A-T 20347218-A-T DYZ19 ***
22343960-T-C 20182074-T-C DYZ19 ***
22218003-C-A 20056117-C-A DYZ19 ***
8207849-G-A 8339808-G-A ***
13461819-G-C 11306143-G-C ***
13663869-T-A 11508193-T-A DYZ17 ***
13839673-A-G 11718967-A-G DYZ17 ***
21620547-C-G 19458661-C-G ***
22242529-T-A 20080643-T-A FGC67399 DYZ19 ***
22269982-A-T 20108096-A-T ZS3594 FGC20384 DYZ19 ***
22359365-A-T 20197479-A-T DYZ19 ***
22364082-C-T 20202196-C-T DYZ19 ***
10682518-A-ATGCCG ***
10999883-C-T ***
10682502-C-T ***
10958381-C-A ***
4862669-C-A 4994628-C-A ***
10958369-C-A ***
6980089-CAA-C,CA 7112048-CAA-C,CA 17×A***
15309893-C-A 13197998-C-A ***
10682479-C-T ***
13450419-CATTCCATTCT-C,CATTCCATTCC 11294743-CATTCCATTCT-C,CATTCCATTCC ***
4995902-C-A 5127861-C-A ***
10807297-AC-A ***
13471197-G-T 11315521-G-T ***
10789334-C-A ***
10958325-A-G ***
13493906-G-A 11338230-G-A ***
13471187-C-A 11315511-C-A ***
18060031-CTT-C 15948151-CTT-C 11×T***
15384067-C-A 13272187-C-A ***
13938952-G-C 11818246-G-C ***
19122299-C-A 17010419-C-A ***
56833580-CTCCAT-C,TTCCAT ***
28813788-G-A 26667641-G-A ***
56830755-C-A,G ***
10821880-T-A ***
17503474-CAG-C 15391594-CAG-C ***
9481277-CT-C 9643668-CT-C 9×T***
10808597-A-T ***
10958360-A-T ***
23511621-C-A 21349735-C-A ***
13483303-G-C,T 11327627-G-C,T ***
2669117-C-T 2801076-C-T ***
2681673-C-A 2813632-C-A ***
2848487-A-T 2980446-A-T ***
3409449-TTTG-T 3541408-TTTG-T 6×TTG***
4961405-G-T 5093364-G-T ***
5459393-C-A 5591352-C-A ***
5710372-C-A 5842331-C-A ***
6349176-CTT-C,CTTT 6481135-CTT-C,CTTT 12×T***
6356367-C-A 6488326-C-A ***
6689190-C-A 6821149-C-A ***
6755316-C-A 6887275-C-A ***
6808535-C-A 6940494-C-A ***
7089891-C-A 7221850-C-A ***
7284415-C-A 7416374-C-A ***
7355990-C-A 7487949-C-A ***
7538342-C-A 7670301-C-A ***
7665396-C-A 7797355-C-A ***
7670237-C-A 7802196-C-A ***
7725252-C-A 7857211-C-A ***
7858742-C-A 7990701-C-A ***
8092572-G-T 8224531-G-T ***
8102567-C-A 8234526-C-A FT36556 ***
8112696-C-A 8244655-C-A ***
8156108-C-A 8288067-C-A Y46895 ***
8202756-T-C 8334715-T-C ***
8287266-G-T 8419225-G-T ***
8341248-C-A 8473207-C-A ***
8341602-C-A 8473561-C-A ***
8718869-C-A 8850828-C-A ***
8752743-A-G 8884702-A-G ***
8753331-G-T 8885290-G-T ***
8773751-C-A 8905710-C-A ***
8791655-CAAAAA-C 8923614-CAAAAA-C 15×A***
8894411-C-A 9026370-C-A ***
9018171-C-A 9180562-C-A ***
9645765-C-A 9808156-C-A IR3_Prx ***
9650560-C-A 9812951-C-A IR3_Prx ***
9873284-GACC-G 10035675-GACC-G ***
9972518-T-C 10134909-T-C ***
9979910-T-C 10142301-T-C ***
10682508-A-G,T ***
10682526-C-CAAT,T ***
10807285-C-G ***
10807292-T-TG ***
10807296-A-C ***
10808609-T-C ***
10821889-CT-C ***
10958350-A-ATGTCG ***
10968456-TTCCTTTCCAC-T ***
13442585-C-A 11286909-C-A ***
13456450-C-A 11300774-C-A ***
13456467-C-A 11300791-C-A ***
11643299-C-T DYZ17 ***
11666329-A-G DYZ17 ***
13842656-T-A 11721950-T-A DYZ17 ***
14079502-C-A 11958796-C-A ***
14085312-C-A 11964606-C-A FT130741 ***
14091748-C-A 11971042-C-A ***
14169633-C-A 12048927-C-A ***
14312394-C-A 12191688-C-A ***
14328490-C-A 12207784-C-A ***
14392193-C-A 12271489-C-A ***
14418896-C-A 12298171-C-A ***
14426950-C-A 12306225-C-A ***
14642454-GTT-G,GTTT 12530523-GTT-G,GTTT 17×T***
14771126-CTTT-C,CT 12659195-CTTT-C,CT 16×T***
14772676-ATTT-A,ATT 12660745-ATTT-A,ATT 21×T***
14946297-C-A 12834371-C-A ***
15111717-C-A 12999804-C-A ***
15330715-C-A 13218833-C-A ***
15402239-C-A 13290359-C-A ***
15411443-C-A 13299563-C-A ***
15549883-C-A 13438003-C-A ***
15619592-A-G 13507712-A-G ***
15619598-C-A 13507718-C-A ***
15782973-C-A 13671093-C-A FTB76210 ***
15911184-C-A 13799304-C-A ***
15916095-C-A 13804215-C-A ***
15976091-G-A 13864211-G-A ***
15997614-C-A 13885734-C-A ***
16377746-C-A 14265866-C-A ***
16460601-C-A 14348721-C-A ***
16606985-C-A 14495105-C-A ***
16757345-C-A 14645465-C-A ***
16781965-C-A 14670085-C-A ***
16871900-C-A 14760020-C-A ***
16912632-C-A 14800752-C-A ***
16938759-C-A 14826879-C-A ***
17049154-C-A 14937274-C-A ***
17253877-C-A 15141997-C-A ***
17361877-A-G 15249997-A-G ***
17609653-TTTTATTTTTTTAATAAAAGCAAGC-T 15497773-TTTTATTTTTTTAATAAAAGCAAGC-T ***
17874419-C-A 15762539-C-A ***
18020039-C-A 15908159-C-A BY39530 ***
18067628-C-A 15955748-C-A ***
18195098-C-A 16083218-C-A ***
18255926-G-T 16144046-G-T ***
18889153-G-A 16777273-G-A ***
18973341-AAATTTTATTT-A 16861461-AAATTTTATTT-A ***
20379777-G-T 18217891-G-T P5_Dst ***
21142890-AATAGCAAAATCATG-A 18981004-AATAGCAAAATCATG-A ***
21364562-C-A 19202676-C-A ***
21532510-C-A 19370624-C-A ***
21591260-C-A 19429374-C-A ***
21672414-C-A 19510528-C-A ***
21686939-C-A 19525053-C-A ***
21858314-G-A 19696428-G-A ***
21890760-C-A 19728874-C-A ***
21901921-GGA-G 19740035-GGA-G ***
21939051-C-A 19777165-C-A ***
22128273-CTTTATTTTA-C 19966387-CTTTATTTTA-C ***
22159692-GT-G 19997806-GT-G ***
22562613-C-A 20400727-C-A ***
22583813-C-A 20421927-C-A ***
22726030-C-A 20564144-C-A ***
22755391-C-CA 20593505-C-CA 8×A***
22760236-C-A 20598350-C-A ***
22797939-T-C 20636053-T-C ***
22938812-AT-A,A 20776926-AT-A,A 14×T***
23061607-C-A 20899721-C-A ***
23123772-C-A 20961886-C-A ***
23127153-C-A 20965267-C-A ***
23474913-TATTAAA-T 21313027-TATTAAA-T ***
23542870-C-A 21380984-C-A ***
23552552-G-A 21390666-G-A ***
23620774-C-A 21458888-C-A ***
23637182-CTT-C 21475296-CTT-C ***
23745389-G-T 21583503-G-T ***
23746603-C-A 21584717-C-A ***
23852565-C-A 21690679-C-A ***
24384710-G-T 22238563-G-T ***
24425367-G-A 22279220-G-A FT182890 ***
24436159-C-A 22290012-C-A ***
26100843-G-T 23954696-G-T P1_Y1 ***
28544772-C-A 26398625-C-A ***
28733104-G-T 26586957-G-T ***
56829711-C-A ***
56831334-C-CTA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.