O'Sullivan
FTDNA: 435873, BigY2: 435873Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 435873 | BigY2 435873 |
---|---|---|---|---|---|---|---|---|---|
28817076-C-A | 26670929-C-A | A* | |||||||
6106476-C-G | 6238435-C-G | A* | |||||||
13687331-C-A | 11531655-C-A | A* | |||||||
6982700-A-T | 7114659-A-T | BY62716 | Y | Y | + | + | |||
21842164-G-T | 19680278-G-T | BY135855 | Y | + | + | ||||
10987003-A-T | ** | ||||||||
10925665-A-G | ** | ||||||||
10942010-G-T | ** | ||||||||
10977027-A-C | ** | ||||||||
10985591-C-A | ** | ||||||||
56850651-G-C | ** | ||||||||
10922351-C-A | ** | ||||||||
10988075-A-C | ** | ||||||||
10994511-C-A | ** | ||||||||
11006500-A-C | ** | ||||||||
11008393-T-C | ** | ||||||||
11009408-C-A | ** | ||||||||
11016431-C-A | ** | ||||||||
11016880-C-A | ** | ||||||||
10925660-A-C | ** | ||||||||
10919468-C-A | ** | ||||||||
10921337-A-T | ** | ||||||||
10860706-C-T | ** | ||||||||
10834073-G-T | ** | ||||||||
10836628-C-A | FT433433 | ** | |||||||
10836836-T-C | ** | ||||||||
10836902-C-A | ** | ||||||||
10842394-A-T | ** | ||||||||
10842582-C-G | ** | ||||||||
10842588-T-TCCGTC | ** | ||||||||
10862367-C-T | ** | ||||||||
11018811-C-G | ** | ||||||||
10865841-T-A | ** | ||||||||
10885223-A-T | ** | ||||||||
10885229-T-C | ** | ||||||||
10886308-CTCCAT-C | ** | ||||||||
10900527-T-C | ** | ||||||||
10900551-AGGCC-A | ** | ||||||||
10900559-C-CACT | ** | ||||||||
10906736-G-T | ** | ||||||||
11018430-C-A | ** | ||||||||
11034969-T-C | ** | ||||||||
11029247-C-A | ** | ||||||||
14409024-C-CTTTT | 12288321-C-CTTTT | ** | |||||||
14269085-T-G | 12148379-T-G | ** | |||||||
14269116-T-A | 12148410-T-A | ** | |||||||
14280795-C-A | 12160089-C-A | ** | |||||||
14298050-C-A | 12177344-C-A | ** | |||||||
14314141-TG-T | 12193435-TG-T | ** | |||||||
14383932-TC-T | 12263228-TC-T | ** | |||||||
14409029-A-G | 12288326-A-G | ** | |||||||
14192913-A-C | 12072207-A-C | ** | |||||||
14409033-A-T | 12288330-A-T | ** | |||||||
14409039-A-G | 12288336-A-G | ** | |||||||
14409050-G-T | 12288347-G-T | ** | |||||||
14428776-C-A | 12308051-C-A | ** | |||||||
14447988-A-T | 12327261-A-T | ** | |||||||
14459894-T-G | 12339167-T-G | ** | |||||||
14467652-G-T | 12346921-G-T | ** | |||||||
14266313-A-G | 12145607-A-G | ** | |||||||
14023109-G-T | 11902403-G-T | ** | |||||||
11030239-T-C | ** | ||||||||
13596980-T-C | 11441304-T-C | ** | |||||||
10801215-C-A | ** | ||||||||
13245032-A-G | 11089356-A-G | ** | |||||||
13317988-C-A | 11162312-C-A | ** | |||||||
13407247-C-T | 11251571-C-T | ** | |||||||
13474033-C-A | 11318357-C-A | ** | |||||||
13585235-C-A | 11429559-C-A | ** | |||||||
11643400-A-T | ** | ||||||||
13973210-T-G | 11852504-T-G | ** | |||||||
11649306-A-G | ** | ||||||||
13872134-G-T | 11751428-G-T | ** | |||||||
13878543-T-A | 11757837-T-A | ** | |||||||
13880192-C-T | 11759486-C-T | ** | |||||||
13891484-T-G | 11770778-T-G | ** | |||||||
13936075-A-G | 11815369-A-G | ** | |||||||
13945294-A-G | 11824588-A-G | ** | |||||||
10802174-T-A | ** | ||||||||
10772406-C-A | ** | ||||||||
10801172-A-G | ** | ||||||||
7202168-T-C | 7334127-T-C | ** | |||||||
6729688-C-T | 6861647-C-T | ** | |||||||
6772333-G-T | 6904292-G-T | ** | |||||||
6808162-G-C | 6940121-G-C | ** | |||||||
6954797-C-A | 7086756-C-A | ** | |||||||
7081333-G-T | 7213292-G-T | ** | |||||||
7111804-C-A | 7243763-C-A | ** | |||||||
7203708-A-G | 7335667-A-G | ** | |||||||
6464888-G-C | 6596847-G-C | ** | |||||||
7242545-C-T | 7374504-C-T | ** | |||||||
7242546-T-C | 7374505-T-C | ** | |||||||
7242561-T-C | 7374520-T-C | ** | |||||||
7254487-G-T | 7386446-G-T | ** | |||||||
7337901-G-T | 7469860-G-T | ** | |||||||
7369155-C-A | 7501114-C-A | ** | |||||||
7391804-C-A | 7523763-C-A | ** | |||||||
6519587-G-A | 6651546-G-A | ** | |||||||
6433337-G-T | 6565296-G-T | ** | |||||||
7860081-C-A | 7992040-C-A | ** | |||||||
5755264-C-A | 5887223-C-A | ** | |||||||
5292204-T-G | 5424163-T-G | ** | |||||||
5358426-G-C | 5490385-G-C | ** | |||||||
5358429-C-A | 5490388-C-A | ** | |||||||
5519310-C-A | 5651269-C-A | ** | |||||||
5616696-C-A | 5748655-C-A | ** | |||||||
5672580-G-T | 5804539-G-T | ** | |||||||
5879115-C-A | 6011074-C-A | ** | |||||||
6267713-A-T | 6399672-A-T | IR3_Dst | ** | ||||||
5895797-C-A | 6027756-C-A | ** | |||||||
5911272-A-T | 6043231-A-T | ** | |||||||
5911347-T-C | 6043306-T-C | ** | |||||||
5911348-A-T | 6043307-A-T | ** | |||||||
5990121-CATTCTA-C | 6122080-CATTCTA-C | ** | |||||||
6012382-TC-T | 6144341-TC-T | ** | |||||||
6165653-T-G | 6297612-T-G | IR3_Dst | ** | ||||||
7541538-T-A | 7673497-T-A | ** | |||||||
7897507-G-T | 8029466-G-T | ** | |||||||
10788106-C-A | ** | ||||||||
10685565-T-C | ** | ||||||||
10012857-C-A | 10175248-C-A | ** | |||||||
10018335-C-A | 10180726-C-A | ** | |||||||
10046167-C-A | 10208558-C-A | ** | |||||||
10627930-A-C | ** | ||||||||
10667848-G-T | ** | ||||||||
10684769-G-A | ** | ||||||||
10686083-C-G | ** | ||||||||
9940097-C-T | 10102488-C-T | ** | |||||||
10686099-C-T | ** | ||||||||
10744844-A-T | ** | ||||||||
10751827-T-C | ** | ||||||||
10752832-C-A | ** | ||||||||
10757090-G-C | ** | ||||||||
10761790-C-G | ** | ||||||||
14471691-C-A | 12350960-C-A | ** | |||||||
9943463-C-A | 10105854-C-A | ** | |||||||
9732987-T-A | 9895378-T-A | IR3_Prx | ** | ||||||
7897549-C-A | 8029508-C-A | ** | |||||||
8855297-A-T | 8987256-A-T | ** | |||||||
8100506-CA-C | 8232465-CA-C | ** | |||||||
8142865-C-A | 8274824-C-A | ** | |||||||
8142874-C-A | 8274833-C-A | ** | |||||||
8214979-C-A | 8346938-C-A | ** | |||||||
8270660-C-A | 8402619-C-A | ** | |||||||
8690320-C-T | 8822279-C-T | ** | |||||||
9116786-G-T | ** | ||||||||
9622372-GTGTGT-G | 9784763-GTGTGT-G | IR3_Prx | ** | ||||||
9125387-C-G | ** | ||||||||
8969491-T-G | 9131882-T-G | ** | |||||||
8976393-G-T | 9138784-G-T | ** | |||||||
9069010-T-C | 9231401-T-C | ** | |||||||
9069017-T-C | 9231408-T-C | ** | |||||||
9069022-C-T | 9231413-C-T | ** | |||||||
9424429-G-A | 9586820-G-A | ** | |||||||
14467671-C-A | 12346940-C-A | ** | |||||||
14560723-C-A | 12448924-C-A | ** | |||||||
14501878-C-A | 12390083-C-A | ** | |||||||
22032618-T-A | 19870732-T-A | ** | |||||||
21297328-G-T | 19135442-G-T | ** | |||||||
21488824-C-A | 19326938-C-A | ** | |||||||
21602871-C-A | 19440985-C-A | ** | |||||||
21708265-C-G | 19546379-C-G | ** | |||||||
21852649-T-G | 19690763-T-G | ** | |||||||
21853637-T-A | 19691751-T-A | ** | |||||||
22044136-T-C | 19882250-T-C | ** | |||||||
21238690-G-C | 19076804-G-C | ** | |||||||
22182981-A-T | 20021095-A-T | ** | |||||||
22263892-A-C | 20102006-A-C | DYZ19 | ** | ||||||
22274241-C-A | 20112355-C-A | DYZ19 | ** | ||||||
22274255-G-C | 20112369-G-C | DYZ19 | ** | ||||||
22274262-C-T | 20112376-C-T | DYZ19 | ** | ||||||
22655070-A-T | 20493184-A-T | ** | |||||||
22843712-G-T | 20681826-G-T | ** | |||||||
21283161-A-C | 19121275-A-C | ** | |||||||
21238671-G-C | 19076785-G-C | ** | |||||||
22991237-T-C | 20829351-T-C | ** | |||||||
20776124-C-G | 18614238-C-G | P4_Prx | ** | ||||||
20022425-T-C | 17910545-T-C | P5_Prx | ** | ||||||
20230184-A-AC | 18068298-A-AC | P5_Dst | ** | ||||||
20231510-A-G | 18069624-A-G | P5_Dst | ** | ||||||
20458364-G-T | 18296478-G-T | P5_Dst | ** | ||||||
20693730-C-A | 18531844-C-A | P4_Prx | ** | ||||||
20723362-C-T | 18561476-C-T | P4_Prx | ** | ||||||
20776218-T-G | 18614332-T-G | P4_Prx | ** | ||||||
21238668-T-C | 19076782-T-C | ** | |||||||
20776237-A-G | 18614351-A-G | P4_Prx | ** | ||||||
20832451-C-A | 18670565-C-A | P4_Gap | ** | ||||||
21116841-G-T | 18954955-G-T | ** | |||||||
21163020-A-T | 19001134-A-T | ** | |||||||
21163040-C-G | 19001154-C-G | ** | |||||||
21189558-G-A | 19027672-G-A | ** | |||||||
21235121-A-C | 19073235-A-C | ** | |||||||
22880776-C-A | 20718890-C-A | ** | |||||||
23345579-C-A | 21183693-C-A | ** | |||||||
20022360-G-A | 17910480-G-A | P5_Prx | ** | ||||||
28607890-C-A | 26461743-C-A | ** | |||||||
27546799-A-G | 25400652-A-G | P1_Y2 | ** | ||||||
27872570-G-T | 25726423-G-T | P1_Y2 | ** | ||||||
28191204-A-C | 26045057-A-C | P1_b4 | ** | ||||||
28243483-C-A | 26097336-C-A | P1_b4 | ** | ||||||
28369941-G-A | 26223794-G-A | P1_gr2 | ** | ||||||
28582029-C-A | 26435882-C-A | ** | |||||||
28611659-A-C | 26465512-A-C | ** | |||||||
26167733-T-TAC | 24021586-T-TAC | P1_Y1 | ** | ||||||
28612166-T-C | 26466019-T-C | ** | |||||||
28643825-A-G | 26497678-A-G | ** | |||||||
28698833-A-T | 26552686-A-T | ** | |||||||
28700492-T-C | 26554345-T-C | ** | |||||||
28767222-C-A | 26621075-C-A | ** | |||||||
28798039-G-A | 26651892-G-A | ** | |||||||
56842301-A-G | ** | ||||||||
26325081-A-G | 24178934-A-G | P1_Y1 | ** | ||||||
26153733-G-T | 24007586-G-T | P1_Y1 | ** | ||||||
23476305-T-G | 21314419-T-G | 10×A | ** | ||||||
24336792-G-GCT | 22190645-G-GCT | P3_t1 | ** | ||||||
23505140-C-A | 21343254-C-A | ** | |||||||
23505146-C-A | 21343260-C-A | ** | |||||||
23522532-C-A | 21360646-C-A | ** | |||||||
23808065-G-T | 21646179-G-T | ** | |||||||
23848148-G-A | 21686262-G-A | ** | |||||||
23848151-C-A | 21686265-C-A | ** | |||||||
23881910-G-A | 21720024-G-A | ** | |||||||
24458751-A-T | 22312604-A-T | ** | |||||||
26138360-A-T | 23992213-A-T | P1_Y1 | ** | ||||||
24612020-G-C | 22465873-G-C | P3_t2 | ** | ||||||
24625286-C-G | 22479139-C-G | P3_t2 | ** | ||||||
24625308-C-A | 22479161-C-A | P3_t2 | ** | ||||||
24625323-T-A | 22479176-T-A | P3_t2 | ** | ||||||
24625371-C-A | 22479224-C-A | P3_t2 | ** | ||||||
25592772-A-C | 23446625-A-C | P1_gr1 | ** | ||||||
25931660-A-G | 23785513-A-G | P1_Y1 | ** | ||||||
20022394-T-A | 17910514-T-A | P5_Prx | ** | ||||||
19754970-T-A | 17643090-T-A | P5_Prx | ** | ||||||
14559842-C-T | 12448043-C-T | FT80817 | ** | ||||||
16412835-C-A | 14300955-C-A | ** | |||||||
16065197-G-T | 13953317-G-T | ** | |||||||
16118432-A-T | 14006552-A-T | P8_Prx | ** | ||||||
16118442-C-G | 14006562-C-G | P8_Prx | ** | ||||||
16118487-C-G | 14006607-C-G | P8_Prx | ** | ||||||
16151805-A-AAAAT | 14039925-A-AAAAT | P8_Dst | 9×AT | ** | |||||
16228028-G-A | 14116148-G-A | ** | |||||||
16462363-G-C | 14350483-G-C | ** | |||||||
16057325-T-G | 13945445-T-G | ** | |||||||
16478251-T-A | 14366371-T-A | ** | |||||||
16528136-A-C | 14416256-A-C | ** | |||||||
16629313-G-T | 14517433-G-T | ** | |||||||
16786149-A-G | 14674269-A-G | ** | |||||||
16968349-C-A | 14856469-C-A | ** | |||||||
16993853-C-A | 14881973-C-A | ** | |||||||
17064830-T-G | 14952950-T-G | ** | |||||||
16057330-A-C | 13945450-A-C | ** | |||||||
15735385-C-A | 13623505-C-A | ** | |||||||
17118392-C-G | 15006512-C-G | ** | |||||||
15126258-C-A | 13014345-C-A | ** | |||||||
5221135-C-A | 5353094-C-A | ** | |||||||
14605792-C-T | 12493994-C-T | ** | |||||||
14622164-C-A | 12510362-C-A | ** | |||||||
14727341-TTA-G | 12615409-TTA-G | ** | |||||||
14914672-C-CTTT | 12802739-C-CTTT | 17×T | ** | ||||||
14934298-G-A | 12822363-G-A | ** | |||||||
15190174-A-T | 13078260-A-T | ** | |||||||
15605589-C-A | 13493709-C-A | ** | |||||||
15190180-T-G | 13078266-T-G | ** | |||||||
15201500-T-G | 13089586-T-G | ** | |||||||
15201526-C-A | 13089612-C-A | ** | |||||||
15397086-A-G | 13285206-A-G | ** | |||||||
15432987-C-A | 13321107-C-A | ** | |||||||
15503402-C-T | 13391522-C-T | ** | |||||||
15503496-C-G | 13391616-C-G | ** | |||||||
17089105-C-A | 14977225-C-A | ** | |||||||
17194313-C-A | 15082433-C-A | ** | |||||||
19754918-T-C | 17643038-T-C | FT452371 | P5_Prx | ** | |||||
19520832-A-C | 17408952-A-C | ** | |||||||
19235677-C-A | 17123797-C-A | ** | |||||||
19346652-A-T | 17234772-A-T | ** | |||||||
19356356-C-T | 17244476-C-T | ** | |||||||
19415362-A-G | 17303482-A-G | ** | |||||||
19479860-T-A | 17367980-T-A | ** | |||||||
19479870-T-A | 17367990-T-A | ** | |||||||
19529174-C-A | 17417294-C-A | ** | |||||||
18810744-T-C | 16698864-T-C | ** | |||||||
19529310-T-A | 17417430-T-A | ** | |||||||
19535648-A-T | 17423768-A-T | ** | |||||||
19537805-A-G | 17425925-A-G | ** | |||||||
19551760-T-A | 17439880-T-A | ** | |||||||
19586719-GA-G | 17474839-GA-G | P5_Prx | ** | ||||||
19606600-A-AC | 17494720-A-AC | P5_Prx | ** | ||||||
19754900-T-C | 17643020-T-C | P5_Prx | ** | ||||||
18848047-C-G | 16736167-C-G | ** | |||||||
18767221-G-T | 16655341-G-T | ** | |||||||
17220878-A-G | 15108998-A-G | ** | |||||||
18085673-T-C | 15973793-T-C | ** | |||||||
17551994-G-A | 15440114-G-A | ** | |||||||
17559799-C-A | 15447919-C-A | ** | |||||||
17562067-C-A | 15450187-C-A | ** | |||||||
17650167-C-A | 15538287-C-A | ** | |||||||
17813276-A-G | 15701396-A-G | ** | |||||||
17928511-C-A | 15816631-C-A | ** | |||||||
18079559-T-C | 15967679-T-C | ** | |||||||
18086323-T-A | 15974443-T-A | ** | |||||||
18753298-C-T | 16641418-C-T | ** | |||||||
18138212-A-G | 16026332-A-G | ** | |||||||
18352141-A-C | 16240261-A-C | P6_Prx | ** | ||||||
18539062-C-A | 16427182-C-A | ** | |||||||
18564923-C-A | 16453043-C-A | ** | |||||||
18565995-G-A | 16454115-G-A | ** | |||||||
18593477-T-C | 16481597-T-C | ** | |||||||
18687571-A-T | 16575691-A-T | ** | |||||||
5246757-T-G | 5378716-T-G | ** | |||||||
5911246-T-A | 6043205-T-A | ** | |||||||
4909146-A-T | 5041105-A-T | ** | |||||||
5976936-C-A | 6108895-C-A | ** | |||||||
4909140-A-T | 5041099-A-T | ** | |||||||
4909152-A-T | 5041111-A-T | ** | |||||||
24611993-A-AC | 22465846-A-AC | P3_t2 | ** | ||||||
21238680-A-C | 19076794-A-C | ** | |||||||
21604019-C-A | 19442133-C-A | ** | |||||||
9962189-C-A | 10124580-C-A | FT373592 | ** | ||||||
13888559-G-T | 11767853-G-T | ** | |||||||
10982643-T-C | ** | ||||||||
11027091-G-A | ** | ||||||||
18780205-C-A | 16668325-C-A | ** | |||||||
11023054-T-C | ** | ||||||||
18767203-G-T | 16655323-G-T | ** | |||||||
14143042-C-A | 12022336-C-A | ** | |||||||
14143042-C-CT | 12022336-C-CT | ** | |||||||
2810426-G-T | 2942385-G-T | ** | |||||||
4065236-C-A | 4197195-C-A | ** | |||||||
20213000-G-T | 18051114-G-T | P5_Dst | ** | ||||||
22063864-C-A | 19901978-C-A | ** | |||||||
3833651-T-A | 3965610-T-A | ** | |||||||
10687187-C-T | ** | ||||||||
10687193-C-T | ** | ||||||||
10687205-TGCCTT-C | ** | ||||||||
23563947-C-A | 21402061-C-A | ** | |||||||
14216212-C-A | 12095506-C-A | ** | |||||||
14473646-C-A | 12352915-C-A | ** | |||||||
22766678-C-A | 20604792-C-A | ** | |||||||
17038496-C-A | 14926616-C-A | ** | |||||||
14030171-C-A | 11909465-C-A | ** | |||||||
6763958-C-A | 6895917-C-A | ** | |||||||
16118571-T-TA | 14006691-T-TA | P8_Prx | ** | ||||||
10835634-C-A | ** | ||||||||
19520845-T-A | 17408965-T-A | 21×A | ** | ||||||
9320439-G-A | 9482830-G-A | ** | |||||||
10791069-G-T | ** | ||||||||
18965931-C-A | 16854051-C-A | ** | |||||||
14526827-C-A | 12415028-C-A | ** | |||||||
19129170-C-A | 17017290-C-A | ** | |||||||
15648613-C-A | 13536733-C-A | ** | |||||||
15870504-C-A | 13758624-C-A | ** | |||||||
28614276-T-C | 26468129-T-C | FT69347 | ** | ||||||
28778988-C-T | 26632841-C-T | ** | |||||||
22191601-G-T | 20029715-G-T | ** | |||||||
11023134-C-A | ** | ||||||||
20478276-A-T | 18316390-A-T | P5_Dst | ** | ||||||
27829295-C-A | 25683148-C-A | P1_Y2 | ** | ||||||
8736430-C-A | 8868389-C-A | ** | |||||||
7134686-G-A | 7266645-G-A | ** | |||||||
7645170-G-T | 7777129-G-T | ** | |||||||
16170442-C-A | 14058562-C-A | ** | |||||||
8232087-C-A | 8364046-C-A | ** | |||||||
19183516-ATTT-A | 17071636-ATTT-A | 13×T | ** | ||||||
20478270-C-T | 18316384-C-T | P5_Dst | ** | ||||||
9140164-C-A | 9302555-C-A | ** | |||||||
23081948-C-A | 20920062-C-A | ** | |||||||
28535692-C-A | 26389545-C-A | ** | |||||||
20022445-T-TA | 17910565-T-TA | P5_Prx | ** | ||||||
10869594-G-T | ** | ||||||||
7304439-C-A | 7436398-C-A | ** | |||||||
27864384-T-TCTC | 25718237-T-TCTC | P1_Y2 | ** | ||||||
7142446-C-A | 7274405-C-A | ** | |||||||
14356509-C-A | 12235804-C-A | ** | |||||||
19745020-C-A | 17633140-C-A | P5_Prx | ** | ||||||
18086243-C-A | 15974363-C-A | ** | |||||||
16094746-C-A | 13982866-C-A | ** | |||||||
8142836-T-A | 8274795-T-A | ** | |||||||
8142866-A-G | 8274825-A-G | ** | |||||||
10989480-C-T | ** | ||||||||
10685828-A-T | ** | ||||||||
9079481-G-T | 9241872-G-T | ** | |||||||
10004805-C-A | 10167196-C-A | ** | |||||||
8142843-C-T | 8274802-C-T | ** | |||||||
7335777-C-A | 7467736-C-A | ** | |||||||
20557738-A-T | 18395852-A-T | P5_Dst | ** | ||||||
19520823-C-A | 17408943-C-A | ** | |||||||
13488949-GGT-G | 11333273-GGT-G | ** | |||||||
8913073-C-A | 9045032-C-A | ** | |||||||
16551077-G-A | 14439197-G-A | ** | |||||||
14505289-C-A | 12393494-C-A | ** | |||||||
16968149-TCA-T | 14856269-TCA-T | ** | |||||||
13488963-A-T | 11333287-A-T | ** | |||||||
14529081-A-T | 12417282-A-T | ** | |||||||
10967577-C-A | ** | ||||||||
11030339-C-A | ** | ||||||||
22164537-G-A | 20002651-G-A | ** | |||||||
23317737-A-T | 21155851-A-T | ** | |||||||
13631338-C-A | 11475662-C-A | ** | |||||||
13486761-A-G | 11331085-A-G | ** | |||||||
21238676-G-C | 19076790-G-C | ** | |||||||
14432016-C-A | 12311289-C-A | ** | |||||||
19537918-AG-A | 17426038-AG-A | ** | |||||||
3271445-C-T | 3403404-C-T | 10×T | ** | ||||||
4757028-C-A | 4888987-C-A | Z2301 | ** | ** | |||||
16921453-A-G | 14809573-A-G | ** | |||||||
17475223-C-T | 15363343-C-T | ** | |||||||
18008713-A-T | 15896833-A-T | P7_Dst | ** | ||||||
6808163-C-G | 6940122-C-G | ** | |||||||
23505158-C-A | 21343272-C-A | 20×A | ** | ||||||
7243731-C-A | 7375690-C-A | ** | ** | ||||||
18365541-ATGTGTG-A | 16253661-ATGTGTG-A | P6_Prx | 20×TG | ** | |||||
19048078-T-C | 16936198-T-C | Y6683 | ** | ||||||
23098810-C-T | 20936924-C-T | ** | |||||||
24614213-T-A | 22468066-T-A | P3_t2 | ** | ||||||
24614217-G-A | 22468070-G-A | P3_t2 | ** | ||||||
13231688-C-A | 11076012-C-A | ** | |||||||
14286034-C-A | 12165328-C-A | ** | |||||||
10751130-C-A | ** | ||||||||
15742474-G-T | 13630594-G-T | ** | |||||||
10751128-A-G | ** | ||||||||
16848422-C-A | 14736542-C-A | ** | |||||||
19071711-C-A | 16959831-C-A | ** | |||||||
10899213-G-C | ** | ||||||||
21902164-C-A | 19740278-C-A | ** | |||||||
7626289-C-A | 7758248-C-A | ** | |||||||
15262442-C-A | 13150526-C-A | ** | |||||||
10751129-T-A | ** | ||||||||
10936208-T-A | ** | ||||||||
11023037-A-C | ** | ||||||||
20315657-T-TC | 18153771-T-TC | P5_Dst | ** | ||||||
16421212-C-A | 14309332-C-A | ** | |||||||
9181121-C-A | 9343512-C-A | ** | |||||||
19745021-A-T | 17633141-A-T | P5_Prx | ** | ||||||
10939630-G-A | ** | ||||||||
28643871-C-A | 26497724-C-A | ** | |||||||
10671472-C-A | ** | ||||||||
28700446-C-A | 26554299-C-A | ** | |||||||
10936202-C-T | ** | ||||||||
4521586-T-G | 4653545-T-G | ** | |||||||
8746363-C-A | 8878322-C-A | ** | |||||||
6165664-A-AC | 6297623-A-AC | IR3_Dst | ** | ||||||
10885228-T-C | ** | ||||||||
21617768-C-A | 19455882-C-A | ** | |||||||
25995539-TACAGGA-T | 23849392-TACAGGA-T | P1_Y1 | ** | ||||||
13213599-C-A | 11057923-C-A | ** | |||||||
10924677-G-T | ** | ||||||||
14552386-C-A | 12440587-C-A | ** | |||||||
11014604-C-G | ** | ||||||||
11014620-ATTCCATTCCATTCCT-A | ** | ||||||||
11014657-T-C | ** | ||||||||
22587138-G-A | 20425252-G-A | ** | |||||||
9940092-C-A | 10102483-C-A | ** | |||||||
14456050-C-A | 12335323-C-A | ** | |||||||
4370966-C-A | 4502925-C-A | ** | |||||||
16874793-C-A | 14762913-C-A | ** | |||||||
23190073-G-T | 21028187-G-T | ** | |||||||
19520839-C-A | 17408959-C-A | ** | |||||||
3501019-C-T | 3632978-C-T | ** | |||||||
3531769-T-C | 3663728-T-C | ** | |||||||
3535848-G-T | 3667807-G-T | ** | |||||||
3550544-TCAA-T | 3682503-TCAA-T | ** | |||||||
3626376-G-T | 3758335-G-T | ** | |||||||
3651310-T-G | 3783269-T-G | ** | |||||||
3854094-T-G | 3986053-T-G | ** | |||||||
7099294-C-A | 7231253-C-A | ** | |||||||
8052473-A-G | 8184432-A-G | ** | |||||||
2915224-C-A | 3047183-C-A | ** | |||||||
18174495-C-A | 16062615-C-A | ** | |||||||
3877132-G-T | 4009091-G-T | ** | |||||||
17714861-C-A | 15602981-C-A | ** | |||||||
22855011-G-T | 20693125-G-T | ** | |||||||
17637763-C-A | 15525883-C-A | ** | |||||||
15503473-C-A | 13391593-C-A | ** | |||||||
16713013-C-A | 14601133-C-A | ** | |||||||
10988667-T-C | ** | ||||||||
7664762-G-T | 7796721-G-T | ** | |||||||
7202260-C-A | 7334219-C-A | ** | |||||||
10987023-C-A | ** | ||||||||
3923252-A-C | 4055211-A-C | ** | |||||||
28775357-C-A | 26629210-C-A | ** | |||||||
17158483-C-A | 15046603-C-A | ** | |||||||
13697182-C-A | 11541506-C-A | ** | |||||||
10842606-A-G | ** | ||||||||
10842595-C-T | ** | ||||||||
3279872-C-A | 3411831-C-A | ** | |||||||
4389554-T-C | 4521513-T-C | ** | |||||||
24579811-TG-T | 22433664-TG-T | P3_t2 | ** | ||||||
2839837-C-A | 2971796-C-A | ** | |||||||
2730008-G-T | 2861967-G-T | ** | |||||||
9107863-G-T | ** | ||||||||
23152760-C-A | 20990874-C-A | ** | |||||||
17535562-G-A | 15423682-G-A | ** | |||||||
2730088-T-A | 2862047-T-A | ** | |||||||
10842620-T-C | ** | ||||||||
17886497-C-A | 15774617-C-A | ** | |||||||
10018293-C-A | 10180684-C-A | ** | |||||||
2759979-C-A | 2891938-C-A | ** | |||||||
56861675-C-T | ** | ||||||||
6505263-C-A | 6637222-C-A | ** | |||||||
20690188-T-C | 18528302-T-C | P4_Prx | ** | ||||||
2812814-G-T | 2944773-G-T | ** | |||||||
17467852-C-A | 15355972-C-A | ** | |||||||
7084318-C-A | 7216277-C-A | ** | |||||||
2860279-C-A | 2992238-C-A | ** | |||||||
17030632-C-A | 14918752-C-A | ** | |||||||
10994556-C-A | ** | ||||||||
5690152-C-A | 5822111-C-A | ** | |||||||
13482036-C-A | 11326360-C-A | ** | |||||||
25899720-A-G | 23753573-A-G | P1_Y1 | ** | ||||||
2915073-T-G | 3047032-T-G | ** | |||||||
8720664-C-A | 8852623-C-A | ** | |||||||
7081347-G-T | 7213306-G-T | ** | |||||||
20888644-C-A | 18726758-C-A | P4_Dst | ** | ||||||
3051951-C-A | 3183910-C-A | ** | |||||||
10013735-C-A | 10176126-C-A | ** | |||||||
3148520-A-G | 3280479-A-G | ** | |||||||
13206197-C-A | 11050521-C-A | ** | |||||||
14871454-C-A | 12759524-C-A | ** | |||||||
13593750-C-A | 11438074-C-A | ** | |||||||
4713571-C-A | 4845530-C-A | ** | |||||||
4388675-T-A | 4520634-T-A | ** | |||||||
4443533-T-C | 4575492-T-C | ** | |||||||
4509373-C-A | 4641332-C-A | ** | |||||||
5292192-G-A | 5424151-G-A | ** | |||||||
4510024-T-G | 4641983-T-G | ** | |||||||
24264617-C-A | 22118470-C-A | P3_b1 | ** | ||||||
10900619-C-A | ** | ||||||||
14586090-G-T | 12474290-G-T | ** | |||||||
23625523-C-A | 21463637-C-A | ** | |||||||
4628869-A-G | 4760828-A-G | ** | |||||||
3346928-C-A | 3478887-C-A | ** | |||||||
10988657-T-C | ** | ||||||||
15365257-C-A | 13253377-C-A | ** | |||||||
20776248-T-TA | 18614362-T-TA | P4_Prx | ** | ||||||
19505316-A-T | 17393436-A-T | ** | |||||||
10757314-A-C | ** | ||||||||
4804679-T-G | 4936638-T-G | ** | |||||||
6630618-C-A | 6762577-C-A | ** | |||||||
10661721-T-TTACCC | ** | ||||||||
4900235-TA-T | 5032194-TA-T | ** | |||||||
10661694-C-T | ** | ||||||||
10661682-T-C | ** | ||||||||
10661681-C-A | ** | ||||||||
4902385-T-C | 5034344-T-C | ** | |||||||
4909125-C-T | 5041084-C-T | ** | |||||||
17923495-C-A | 15811615-C-A | ** | |||||||
28664970-C-A | 26518823-C-A | ** | |||||||
22068621-C-A | 19906735-C-A | ** | |||||||
11034975-C-A | ** | ||||||||
10686907-C-A | ** | ||||||||
15798249-C-A | 13686369-C-A | ** | |||||||
4007337-G-T | 4139296-G-T | ** | |||||||
16028354-C-A | 13916474-C-A | ** | |||||||
4171591-CT-C | 4303550-CT-C | ** | |||||||
4223403-G-A | 4355362-G-A | ** | |||||||
13197019-A-T | 11041343-A-T | ** | |||||||
19520840-T-C | 17408960-T-C | ** | |||||||
56840497-C-A | ** | ||||||||
6492542-C-A | 6624501-C-A | ** | |||||||
15928737-C-T | 13816857-C-T | ** | |||||||
4270732-C-T | 4402691-C-T | ** | |||||||
6096874-C-A | 6228833-C-A | ** | |||||||
7242045-C-A | 7374004-C-A | FT310630 | ** | ||||||
4353771-T-C | 4485730-T-C | ** | |||||||
22345766-C-A | 20183880-C-A | DYZ19 | ** | ||||||
22079775-C-A | 19917889-C-A | ** | |||||||
4235708-C-A | 4367667-C-A | ** | |||||||
22306971-C-T | 20145085-C-T | DYZ19 | *** | ||||||
13309380-C-T | 11153704-C-T | BY85067 | *** | ||||||
21796743-G-T | 19634857-G-T | *** | |||||||
24407217-C-T | 22261070-C-T | *** | |||||||
9645652-TC-T | 9808043-TC-T | IR3_Prx | *** | ||||||
5976810-A-G | 6108769-A-G | *** | |||||||
28716274-C-A | 26570127-C-A | *** | |||||||
22306865-G-T | 20144979-G-T | DYZ19 | *** | ||||||
22447091-C-A | 20285205-C-A | DYZ19 | *** | ||||||
7204747-C-A | 7336706-C-A | *** | |||||||
19738303-AT-A | 17626423-AT-A | P5_Prx | *** | ||||||
4179020-T-A | 4310979-T-A | FT125738 | 17×A | *** | |||||
22306964-C-T | 20145078-C-T | DYZ19 | *** | ||||||
13858572-A-C | 11737866-A-C | *** | |||||||
22450364-G-A | 20288478-G-A | DYZ19 | *** | ||||||
7130598-T-A | 7262557-T-A | *** | |||||||
13680963-A-C | 11525287-A-C | *** | |||||||
7132035-T-C | 7263994-T-C | F15621 | *** | ||||||
58973022-TCGAGACTGTA-T | 56826875-TCGAGACTGTA-T | *** | |||||||
7690002-C-A | 7821961-C-A | *** | |||||||
15882073-TCAA-A,T | 13770193-TCAA-A,T | *** | |||||||
13862454-C-A | 11741748-C-A | *** | |||||||
10760399-C-G | *** | ||||||||
10889199-C-G | *** | ||||||||
10760395-C-A | *** | ||||||||
16020902-A-G | 13909022-A-G | *** | |||||||
15744708-C-A | 13632828-C-A | *** | |||||||
16823937-G-A | 14712057-G-A | *** | |||||||
10889215-A-T | *** | ||||||||
11651862-A-G | *** | ||||||||
10986661-N-A,C | *** | ||||||||
14326684-C-A | 12205978-C-A | BY164886 | *** | ||||||
15753106-C-A | 13641226-C-A | *** | |||||||
7126581-A-G | 7258540-A-G | *** | |||||||
16412562-C-T | 14300682-C-T | *** | |||||||
10693876-C-A | *** | ||||||||
5231057-C-T | 5363016-C-T | *** | |||||||
22189251-AG-A | 20027365-AG-A | *** | |||||||
11018864-C-A | *** | ||||||||
10752421-C-A | *** | ||||||||
13461845-C-T | 11306169-C-T | *** | |||||||
13593770-G-T | 11438094-G-T | *** | |||||||
14219714-CAA-C,CAAA | 12099008-CAA-C,CAAA | 14×A | *** | ||||||
10744433-CAACTGCACTG-C,CCACTGCACTC | *** | ||||||||
11024592-C-A | *** | ||||||||
11654193-G-C | *** | ||||||||
10659309-C-A | *** | ||||||||
16180180-C-A | 14068300-C-A | FT392223 | *** | ||||||
6768914-G-T | 6900873-G-T | *** | |||||||
19263513-C-A | 17151633-C-A | *** | |||||||
9944836-A-G | 10107227-A-G | *** | |||||||
56834620-TTCCATTCCATTTCAC-T,TTCCATTCCATTACAC | *** | ||||||||
11643721-ATTGAT-A | *** | ||||||||
10776072-CTCAAT-C,CTCAAC | *** | ||||||||
21092214-C-A | 18930328-C-A | *** | |||||||
8822622-A-G | 8954581-A-G | *** | |||||||
8832691-T-A | 8964650-T-A | *** | |||||||
21503327-C-A | 19341441-C-A | *** | |||||||
10789350-C-A | *** | ||||||||
28788007-G-A | 26641860-G-A | *** | |||||||
56846922-G-T | *** | ||||||||
6971654-G-A | 7103613-G-A | *** | |||||||
10682462-C-A | *** | ||||||||
21175748-TCA-T | 19013862-TCA-T | *** | |||||||
11665005-G-A | *** | ||||||||
10658313-CAG-C | *** | ||||||||
18892122-TG-T | 16780242-TG-T | *** | |||||||
10659287-A-G | *** | ||||||||
9777506-T-A | 9939897-T-A | *** | |||||||
18777435-C-A | 16665555-C-A | *** | |||||||
14765697-TG-G,TT | 12653766-TG-G,TT | *** | |||||||
14213757-GAGAAAGAA-G,GAGAA | 12093051-GAGAAAGAA-G,GAGAA | 13×AGAA | *** | ||||||
14993842-AT-A,ATT | 12881927-AT-A,ATT | 13×T | *** | ||||||
10801296-C-A | *** | ||||||||
7100797-C-A | 7232756-C-A | *** | |||||||
14475792-G-T | 12355061-G-T | *** | |||||||
13846548-T-A | 11725842-T-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 435873 | 10555661 | 7644196 | 7727030 |
Kit: 435873 | 9603138 | 7789642 | 7681129 |
Used in age calculations | 10555661 | 7789642 | 7727030 |
Counts of SNPs | 2 | 1 |
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