O'Brien
FTDNA: 30225, BigY2: 30225Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 30225 | BigY2 30225 |
---|---|---|---|---|---|---|---|---|---|
20677009-A-C | 18515123-A-C | P4_Prx | *** | A* | |||||
28796287-C-T | 26650140-C-T | DC678 | *** | + | |||||
9490224-AG-A | 9652615-AG-A | + | + | ||||||
13815358-G-T | 11694652-G-T | DC499 | + | + | |||||
13688965-T-A | 11533289-T-A | DC676 | + | ||||||
14603896-G-T | 12492098-G-T | DC500 | Y | Y | + | + | |||
16251075-C-G | 14139195-C-G | DC501 | Y | Y | + | + | |||
16424326-G-A | 14312446-G-A | Y96278 DC677 | Y | ** | + | ||||
23236478-G-A | 21074592-G-A | DC502 | Y | + | + | ||||
56850660-T-G | ** | ||||||||
13908444-A-T | 11787738-A-T | ** | |||||||
14123884-T-G | 12003178-T-G | ** | |||||||
14147081-C-A | 12026375-C-A | ** | |||||||
14200443-A-C | 12079737-A-C | ** | |||||||
14204866-C-A | 12084160-C-A | ** | |||||||
14356298-G-A | 12235593-G-A | ** | |||||||
14279845-A-C | 12159139-A-C | ** | |||||||
13883561-AT-A | 11762855-AT-A | ** | |||||||
14392789-G-T | 12272085-G-T | ** | |||||||
14419043-C-A | 12298318-C-A | ** | |||||||
14429298-C-A | 12308573-C-A | ** | |||||||
14453717-A-G | 12332990-A-G | ** | |||||||
14457527-G-T | 12336800-G-T | ** | |||||||
13884120-C-A | 11763414-C-A | ** | |||||||
11677490-C-A | ** | ||||||||
14462499-G-T | 12341772-G-T | ** | |||||||
11032449-G-A | ** | ||||||||
10999609-C-A | ** | ||||||||
11004426-A-ACTGTAGACAG | ** | ||||||||
11004436-A-T | ** | ||||||||
11004455-C-G | ** | ||||||||
11004460-C-G | ** | ||||||||
11013581-G-T | ** | ||||||||
11019153-C-T | ** | ||||||||
11021117-C-A | ** | ||||||||
11028177-T-G | ** | ||||||||
11032454-T-A | ** | ||||||||
11676406-A-G | ** | ||||||||
13195916-C-A | 11040240-C-A | ** | |||||||
13268905-G-A | 11113229-G-A | ** | |||||||
13294220-A-T | 11138544-A-T | ** | |||||||
13441572-A-G | 11285896-A-G | ** | |||||||
13457691-C-T | 11302015-C-T | ** | |||||||
13484634-C-T | 11328958-C-T | ** | |||||||
13690800-A-G | 11535124-A-G | ** | |||||||
11653718-A-G | ** | ||||||||
11657394-C-A | ** | ||||||||
14457538-G-T | 12336811-G-T | ** | |||||||
14462560-C-A | 12341833-C-A | ** | |||||||
10993137-C-A | ** | ||||||||
15556950-C-A | 13445070-C-A | ** | |||||||
15222888-T-C | 13110974-T-C | ** | |||||||
15252736-T-C | 13140822-T-C | ** | |||||||
15324987-A-T | 13213105-A-T | ** | |||||||
15370102-G-T | 13258222-G-T | ** | |||||||
15399468-C-A | 13287588-C-A | ** | |||||||
15400633-C-A | 13288753-C-A | ** | |||||||
15427516-A-T | 13315636-A-T | ** | |||||||
15442340-C-G | 13330460-C-G | ** | |||||||
15451479-C-A | 13339599-C-A | ** | |||||||
15622473-C-A | 13510593-C-A | ** | |||||||
15171252-G-A | 13059338-G-A | ** | |||||||
15669961-CCACAA-C | 13558081-CCACAA-C | ** | |||||||
15677291-G-T | 13565411-G-T | ** | |||||||
15717783-G-C | 13605903-G-C | ** | |||||||
15727999-C-A | 13616119-C-A | ** | |||||||
15750534-G-T | 13638654-G-T | ** | |||||||
15778623-C-A | 13666743-C-A | ** | |||||||
15913897-C-A | 13802017-C-A | ** | |||||||
15932413-C-A | 13820533-C-A | ** | |||||||
16035782-T-A | 13923902-T-A | ** | |||||||
15217577-C-A | 13105663-C-A | ** | |||||||
15151529-AAC-A | 13039616-AAC-A | ** | |||||||
14515206-A-G | 12403411-A-G | ** | |||||||
14807298-CA-C | 12695369-CA-C | ** | |||||||
14526791-T-A | 12414992-T-A | ** | |||||||
14531963-G-C | 12420164-G-C | ** | |||||||
14543991-C-A | 12432192-C-A | ** | |||||||
14548742-C-A | 12436943-C-A | ** | |||||||
14548837-AT-A | 12437038-AT-A | ** | |||||||
14694355-A-T | 12582421-A-T | ** | |||||||
14723787-C-A | 12611855-C-A | ** | |||||||
14762375-C-T | 12650444-C-T | ** | |||||||
14762379-C-G | 12650448-C-G | ** | |||||||
14824768-T-C | 12712835-T-C | ** | |||||||
15107849-C-A | 12995936-C-A | ** | |||||||
14880301-C-A | 12768371-C-A | ** | |||||||
14882296-C-A | 12770364-C-A | FTA37498 | ** | ||||||
14882317-C-A | 12770383-C-A | ** | |||||||
14938596-G-A | 12826671-G-A | ** | |||||||
14953486-C-G | 12841560-C-G | ** | |||||||
14977414-C-A | 12865489-C-A | ** | |||||||
14982076-C-A | 12870144-C-A | ** | |||||||
14986074-G-C | 12874142-G-C | ** | |||||||
15029519-A-G | 12917607-A-G | ** | |||||||
15038317-C-T | 12926407-C-T | ** | |||||||
10993178-C-G | ** | ||||||||
10961463-CA-T | ** | ||||||||
10993104-A-C | ** | ||||||||
10661612-T-C | ** | ||||||||
10651421-N-C | ** | ||||||||
10652607-C-A | ** | ||||||||
10652917-TGCCA-T | ** | ||||||||
10652924-C-CGTTGAATCT | ** | ||||||||
10654633-G-C | ** | ||||||||
10654634-A-C | ** | ||||||||
10654642-T-C | ** | ||||||||
10655402-A-C | ** | ||||||||
10663162-G-T | ** | ||||||||
10011937-C-A | 10174328-C-A | ** | |||||||
10667030-A-C | ** | ||||||||
10678675-T-C | ** | ||||||||
10679298-A-T | ** | ||||||||
10682640-G-T | ** | ||||||||
10682823-C-A | ** | ||||||||
10684146-T-C | ** | ||||||||
10684595-T-A | ** | ||||||||
10689105-C-T | ** | ||||||||
10050987-T-C | 10213378-T-C | ** | |||||||
10004725-G-A | 10167116-G-A | ** | |||||||
10689115-T-G | ** | ||||||||
9020538-A-G | 9182929-A-G | ** | |||||||
8399247-C-T | 8531206-C-T | ** | |||||||
8558457-C-A | 8690416-C-A | ** | |||||||
8673846-G-A | 8805805-G-A | FT327620 | ** | ||||||
8679499-C-A | 8811458-C-A | ** | |||||||
8686299-C-A | 8818258-C-A | ** | |||||||
8737084-C-A | 8869043-C-A | ** | |||||||
8819398-TA-T | 8951357-TA-T | ** | |||||||
9013020-G-A | 9175411-G-A | ** | |||||||
9068867-A-C | 9231258-A-C | ** | |||||||
9980383-C-A | 10142774-C-A | ** | |||||||
9139112-T-C | 9301503-T-C | ** | |||||||
9440316-C-A | 9602707-C-A | ** | |||||||
9444427-T-G | 9606818-T-G | ** | |||||||
9456702-C-A | 9619093-C-A | ** | |||||||
9516751-C-CTT | 9679142-C-CTT | 14×T | ** | ||||||
9516767-AG-A | 9679158-AG-A | ** | |||||||
9601563-G-A | 9763954-G-A | IR3_Prx | ** | ||||||
9940158-G-C | 10102549-G-C | ** | |||||||
9980081-T-C | 10142472-T-C | ** | |||||||
10689107-C-G | ** | ||||||||
10747693-G-C | ** | ||||||||
10992424-T-G | ** | ||||||||
10887870-A-C | ** | ||||||||
10845853-C-A | ** | ||||||||
10855731-C-T | ** | ||||||||
10856897-C-T | ** | ||||||||
10861597-C-T | ** | ||||||||
10869581-A-C | ** | ||||||||
10879991-C-G | ** | ||||||||
10880422-C-G | ** | ||||||||
10883972-C-A | ** | ||||||||
10888095-T-A | ** | ||||||||
10835420-G-T | ** | ||||||||
10899020-C-A | ** | ||||||||
10912949-C-A | ** | ||||||||
10927950-A-C | ** | ||||||||
10931620-A-G | ** | ||||||||
10941804-G-A | ** | ||||||||
10961425-C-CTATCCGATTT | ** | ||||||||
16060453-C-A | 13948573-C-A | ** | |||||||
10987724-C-A | ** | ||||||||
10992389-C-A | ** | ||||||||
10843857-C-A | ** | ||||||||
10830998-A-T | ** | ||||||||
10751056-C-CTCCATTCCATTCGAT | ** | ||||||||
10800916-A-C | ** | ||||||||
10759003-C-A | ** | ||||||||
10762983-C-CTCTATTCCAG | ** | ||||||||
10768130-T-A | ** | ||||||||
10781190-G-T | ** | ||||||||
10783549-T-G | ** | ||||||||
10790940-A-C | ** | ||||||||
10800865-T-TGGTCCTCTCCACTCCATTCC | ** | ||||||||
10800887-ATCCAC-A | ** | ||||||||
10801691-CCATTCCAT-C | ** | ||||||||
10828236-G-C | ** | ||||||||
10809069-A-C | ** | ||||||||
10815692-A-T | ** | ||||||||
10815709-T-A | ** | ||||||||
10815755-G-C | ** | ||||||||
10815760-C-T | ** | ||||||||
10815763-T-C | ** | ||||||||
10817438-T-A | ** | ||||||||
10817454-C-T | ** | ||||||||
10817469-C-A | ** | ||||||||
16037420-C-A | 13925540-C-A | ** | |||||||
16176507-C-G | 14064627-C-G | ** | |||||||
16070115-C-A | 13958235-C-A | ** | |||||||
22644794-C-A | 20482908-C-A | ** | |||||||
22422139-G-C | 20260253-G-C | DYZ19 | ** | ||||||
22522385-C-A | 20360499-C-A | ** | |||||||
22522408-C-A | 20360522-C-A | ** | |||||||
22540397-G-A | 20378511-G-A | FT32772 | ** | ||||||
22542760-C-A | 20380874-C-A | ** | |||||||
22579986-C-A | 20418100-C-A | ** | |||||||
22585470-G-A | 20423584-G-A | ** | |||||||
22587912-C-A | 20426026-C-A | ** | |||||||
22644887-C-A | 20483001-C-A | ** | |||||||
22240982-T-A | 20079096-T-A | DYZ19 | ** | ||||||
22658477-C-A | 20496591-C-A | ** | |||||||
22699035-C-A | 20537149-C-A | ** | |||||||
22722365-GA-G | 20560479-GA-G | ** | |||||||
22722368-A-AT | 20560482-A-AT | ** | |||||||
22800276-C-A | 20638390-C-A | ** | |||||||
22857889-C-A | 20696003-C-A | ** | |||||||
22896001-C-A | 20734115-C-A | ** | |||||||
22914502-C-A | 20752616-C-A | ** | |||||||
22296104-A-C | 20134218-A-C | DYZ19 | ** | ||||||
22230689-C-A | 20068803-C-A | DYZ19 | ** | ||||||
23199756-CC-A | 21037870-CC-A | ** | |||||||
21357511-A-T | 19195625-A-T | ** | |||||||
21068179-G-A | 18906293-G-A | ** | |||||||
21085778-TCAAAA-T | 18923892-TCAAAA-T | ** | |||||||
21130423-TGA-T | 18968537-TGA-T | ** | |||||||
21132541-C-A | 18970655-C-A | ** | |||||||
21133301-T-A | 18971415-T-A | ** | |||||||
21195912-C-A | 19034026-C-A | ** | |||||||
21220835-C-A | 19058949-C-A | ** | |||||||
21283464-A-G | 19121578-A-G | ** | |||||||
21486523-C-T | 19324637-C-T | ** | |||||||
22149816-C-T | 19987930-C-T | ** | |||||||
21545334-C-A | 19383448-C-A | ** | |||||||
21555262-T-C | 19393376-T-C | ** | |||||||
21603685-C-A | 19441799-C-A | ** | |||||||
21789783-G-T | 19627897-G-T | ** | |||||||
21927310-C-A | 19765424-C-A | Y57394 | ** | ||||||
21946207-A-T | 19784321-A-T | ** | |||||||
21953592-C-A | 19791706-C-A | ** | |||||||
22036847-T-C | 19874961-T-C | ** | |||||||
22095640-C-A | 19933754-C-A | ** | |||||||
23002317-A-G | 20840431-A-G | ** | |||||||
23343649-C-A | 21181763-C-A | ** | |||||||
21037380-C-T | 18875494-C-T | ** | |||||||
28499512-C-A | 26353365-C-A | ** | |||||||
25395797-C-T | 23249650-C-T | P2_r2 | ** | ||||||
25931613-A-T | 23785466-A-T | P1_Y1 | ** | ||||||
25955605-G-T | 23809458-G-T | P1_Y1 | ** | ||||||
26563245-C-A | 24417098-C-A | P1_g2 | ** | ||||||
27842257-A-G | 25696110-A-G | P1_Y2 | ** | ||||||
27842356-A-C | 25696209-A-C | P1_Y2 | ** | ||||||
28462906-C-A | 26316759-C-A | ** | |||||||
28468746-C-T | 26322599-C-T | ** | |||||||
28622751-G-A | 26476604-G-A | ** | |||||||
24751232-T-G | 22605085-T-G | P3_b2 | ** | ||||||
28624110-G-T | 26477963-G-T | ** | |||||||
28652917-G-T | 26506770-G-T | ** | |||||||
28762687-T-A | 26616540-T-A | ** | |||||||
28782722-G-A | 26636575-G-A | ** | |||||||
28782774-A-T | 26636627-A-T | ** | |||||||
28798987-G-T | 26652840-G-T | ** | |||||||
28812505-T-A | 26666358-T-A | ** | |||||||
56848349-C-A | ** | ||||||||
56850134-TG-T | ** | ||||||||
25395740-G-C | 23249593-G-C | P2_r2 | ** | ||||||
24523632-C-A | 22377485-C-A | ** | |||||||
23369707-C-A | 21207821-C-A | FT3254 | ** | ||||||
23578606-A-T | 21416720-A-T | ** | |||||||
23413905-A-G | 21252019-A-G | ** | |||||||
23420675-C-T | 21258789-C-T | ** | |||||||
23438242-A-G | 21276356-A-G | ** | |||||||
23440723-A-G | 21278837-A-G | ** | |||||||
23465813-T-C | 21303927-T-C | ** | |||||||
23475465-C-A | 21313579-C-A | ** | |||||||
23487166-A-C | 21325280-A-C | ** | |||||||
23543373-C-A | 21381487-C-A | ** | |||||||
23651001-C-A | 21489115-C-A | ** | |||||||
24500168-G-T | 22354021-G-T | ** | |||||||
23853856-A-G | 21691970-A-G | ** | |||||||
23869739-G-T | 21707853-G-T | ** | |||||||
23961208-C-A | 21815061-C-A | ** | |||||||
24070111-C-A | 21923964-C-A | P3_b1 | ** | ||||||
24241284-TAAA-T | 22095137-TAAA-T | P3_b1 | 11×A | ** | |||||
24242286-C-A | 22096139-C-A | P3_b1 | ** | ||||||
24328711-A-C | 22182564-A-C | P3_t1 | ** | ||||||
24359681-C-A | 22213534-C-A | ** | |||||||
24456028-C-G | 22309881-C-G | ** | |||||||
21048987-T-C | 18887101-T-C | ** | |||||||
20641653-G-A | 18479767-G-A | P4_Prx | ** | ||||||
16090253-TA-T | 13978373-TA-T | ** | |||||||
17624531-G-T | 15512651-G-T | ** | |||||||
17196394-C-A | 15084514-C-A | ** | |||||||
17271230-C-A | 15159350-C-A | ** | |||||||
17366904-A-T | 15255024-A-T | ** | |||||||
17394574-G-T | 15282694-G-T | ** | |||||||
17448264-A-T | 15336384-A-T | ** | |||||||
17449244-C-A | 15337364-C-A | ** | |||||||
17575186-G-A | 15463306-G-A | ** | |||||||
17580222-A-T | 15468342-A-T | ** | |||||||
17674594-C-G | 15562714-C-G | ** | |||||||
17170438-A-C | 15058558-A-C | ** | |||||||
17675465-A-G | 15563585-A-G | ** | |||||||
17703231-A-C | 15591351-A-C | ** | |||||||
17713907-G-T | 15602027-G-T | ** | |||||||
17718185-C-A | 15606305-C-A | ** | |||||||
17812029-G-A | 15700149-G-A | ** | |||||||
17843058-T-A | 15731178-T-A | ** | |||||||
17863363-T-A | 15751483-T-A | ** | |||||||
17908060-C-A | 15796180-C-A | FTB82472 | ** | ||||||
17187335-G-T | 15075455-G-T | ** | |||||||
17118430-G-T | 15006550-G-T | ** | |||||||
17946659-A-G | 15834779-A-G | S20423 | ** | ||||||
16457886-C-A | 14346006-C-A | ** | |||||||
16091259-T-A | 13979379-T-A | ** | |||||||
16101996-CTTTT-C | 13990116-CTTTT-C | P8_Prx | 19×T | ** | |||||
8341743-C-A | 8473702-C-A | ** | |||||||
16286499-A-G | 14174619-A-G | ** | |||||||
16316763-A-T | 14204883-A-T | ** | |||||||
16336042-G-A | 14224162-G-A | ** | |||||||
16401925-C-A | 14290045-C-A | ** | |||||||
16445540-C-G | 14333660-C-G | ** | |||||||
16465162-T-C | 14353282-T-C | ** | |||||||
17072967-C-A | 14961087-C-A | ** | |||||||
16506619-T-G | 14394739-T-G | ** | |||||||
16528903-C-A | 14417023-C-A | ** | |||||||
16540360-A-C | 14428480-A-C | ** | |||||||
16568215-G-T | 14456335-G-T | ** | |||||||
16572809-C-A | 14460929-C-A | ** | |||||||
16942081-C-A | 14830201-C-A | ** | |||||||
16999149-C-A | 14887269-C-A | ** | |||||||
17029401-C-A | 14917521-C-A | ** | |||||||
17033713-C-A | 14921833-C-A | ** | |||||||
17914973-T-C | 15803093-T-C | ** | |||||||
17946663-G-A | 15834783-G-A | ** | |||||||
20641646-G-A | 18479760-G-A | P4_Prx | ** | ||||||
19389642-G-C | 17277762-G-C | ** | |||||||
18935907-C-A | 16824027-C-A | ** | |||||||
18955753-C-A | 16843873-C-A | ** | |||||||
18978754-C-A | 16866874-C-A | ** | |||||||
19049634-C-A | 16937754-C-A | ** | |||||||
19050142-C-A | 16938262-C-A | ** | |||||||
19060821-T-A | 16948941-T-A | ** | |||||||
19389634-G-T | 17277754-G-T | ** | |||||||
19389637-G-T | 17277757-G-T | ** | |||||||
19389645-G-A | 17277765-G-A | FT240369 | ** | ||||||
18923953-C-T | 16812073-C-T | ** | |||||||
19389656-C-G | 17277776-C-G | ** | |||||||
19389657-T-C | 17277777-T-C | ** | |||||||
19389674-C-CAA | 17277794-C-CAA | ** | |||||||
19389675-GC-G | 17277795-GC-G | ** | |||||||
19389686-T-C | 17277806-T-C | ** | |||||||
19515143-C-A | 17403263-C-A | ** | |||||||
19792702-C-A | 17680822-C-A | P5_Prx | ** | ||||||
19792743-C-A | 17680863-C-A | P5_Prx | ** | ||||||
20603955-A-C | 18442069-A-C | P5_Dst | ** | ||||||
18923973-C-A | 16812093-C-A | ** | |||||||
18905522-C-A | 16793642-C-A | ** | |||||||
17959347-C-A | 15847467-C-A | ** | |||||||
18384316-A-T | 16272436-A-T | P6_Gap | ** | ||||||
18039371-T-TA | 15927491-T-TA | ** | |||||||
18119497-A-T | 16007617-A-T | ** | |||||||
18174537-C-A | 16062657-C-A | ** | |||||||
18215794-C-A | 16103914-C-A | ** | |||||||
18241404-C-A | 16129524-C-A | ** | |||||||
18249511-C-A | 16137631-C-A | ** | |||||||
18249716-A-T | 16137836-A-T | ** | |||||||
18290806-T-C | 16178926-T-C | P6_Prx | ** | ||||||
18385610-C-A | 16273730-C-A | P6_Gap | ** | ||||||
18901218-T-G | 16789338-T-G | ** | |||||||
18423804-C-A | 16311924-C-A | P6_Gap | ** | ||||||
18539050-C-A | 16427170-C-A | ** | |||||||
18564339-A-T | 16452459-A-T | ** | |||||||
18663455-C-A | 16551575-C-A | ** | |||||||
18752120-A-G | 16640240-A-G | ** | |||||||
18752960-G-T | 16641080-G-T | ** | |||||||
18806079-T-C | 16694199-T-C | ** | |||||||
18832819-C-A | 16720939-C-A | ** | |||||||
18873467-C-A | 16761587-C-A | ** | |||||||
8371843-T-C | 8503802-T-C | ** | |||||||
10652937-T-C | ** | ||||||||
8140001-A-T | 8271960-A-T | ** | |||||||
10801745-A-C | ** | ||||||||
19438602-G-A | 17326722-G-A | ** | |||||||
10822861-C-A | ** | ||||||||
4863375-G-T | 4995334-G-T | ** | |||||||
21626991-C-A | 19465105-C-A | ** | |||||||
18253503-C-A | 16141623-C-A | ** | |||||||
26140129-A-T | 23993982-A-T | P1_Y1 | ** | ||||||
21334532-C-A | 19172646-C-A | ** | |||||||
28688966-C-A | 26542819-C-A | ** | |||||||
9524375-G-T | 9686766-G-T | ** | |||||||
28521548-C-A | 26375401-C-A | ** | |||||||
6147479-G-C | 6279438-G-C | IR3_Dst | ** | ||||||
10815703-A-C | ** | ||||||||
23052933-AT-A | 20891047-AT-A | 8×T | ** | ||||||
18733453-C-A | 16621573-C-A | ** | |||||||
10961428-C-T | ** | ||||||||
17756584-C-CTT | 15644704-C-CTT | 11×T | ** | ||||||
15882455-C-T | 13770575-C-T | ** | |||||||
15034707-C-A | 12922795-C-A | ** | |||||||
4873763-C-A | 5005722-C-A | ** | |||||||
15280812-C-A | 13168911-C-A | FTB76107 | ** | ||||||
10794564-G-T | ** | ||||||||
22598230-C-A | 20436344-C-A | ** | |||||||
21545406-C-A | 19383520-C-A | ** | |||||||
26275950-C-T | 24129803-C-T | P1_Y1 | ** | ||||||
2979385-C-A | 3111344-C-A | ** | |||||||
26153978-G-A | 24007831-G-A | P1_Y1 | ** | ||||||
17895197-G-TT | 15783317-G-TT | ** | |||||||
28485911-C-A | 26339764-C-A | ** | |||||||
9945886-T-A | 10108277-T-A | ** | |||||||
15882453-G-T | 13770573-G-T | ** | |||||||
24369474-C-A | 22223327-C-A | ** | |||||||
7608378-C-A | 7740337-C-A | ** | |||||||
26376498-T-A | 24230351-T-A | P1_Y1 | ** | ||||||
56763471-T-C | ** | ||||||||
56763480-T-A | ** | ||||||||
10984375-T-C | ** | ||||||||
10984380-T-C | ** | ||||||||
17500864-G-T | 15388984-G-T | ** | |||||||
7939541-C-A | 8071500-C-A | ** | |||||||
7269641-A-G | 7401600-A-G | ** | |||||||
5560178-C-A | 5692137-C-A | ** | |||||||
19479985-C-A | 17368105-C-A | ** | |||||||
15177438-C-A | 13065524-C-A | ** | |||||||
22167851-C-A | 20005965-C-A | ** | |||||||
22896087-C-A | 20734201-C-A | ** | |||||||
10751023-C-CCAATCCACAG | ** | ||||||||
15750530-A-T | 13638650-A-T | ** | |||||||
14765706-G-T | 12653775-G-T | ** | |||||||
10751090-A-T | ** | ||||||||
7166815-C-A | 7298774-C-A | ** | |||||||
10751093-C-T | ** | ||||||||
20826397-CTTTTTT-C | 18664511-CTTTTTT-C | P4_Gap | 17×T | ** | |||||
10958430-C-A | ** | ||||||||
14802023-TG-T | 12690094-TG-T | ** | |||||||
15749462-C-A | 13637582-C-A | ** | |||||||
7670972-C-A | 7802931-C-A | ** | |||||||
9908434-G-T | 10070825-G-T | ** | |||||||
15076309-C-A | 12964399-C-A | ** | |||||||
24595403-G-T | 22449256-G-T | P3_t2 | ** | ||||||
18172922-C-A | 16061042-C-A | ** | |||||||
16765423-C-A | 14653543-C-A | ** | |||||||
18491434-C-A | 16379554-C-A | P6_Dst | ** | ||||||
19213462-C-A | 17101582-C-A | ** | |||||||
17323689-GGGAA-G | 15211809-GGGAA-G | ** | |||||||
5446940-C-A | 5578899-C-A | ** | |||||||
14295213-C-A | 12174507-C-A | ** | |||||||
26275953-C-G | 24129806-C-G | P1_Y1 | 16×T | ** | |||||
13223453-G-GAGGAA | 11067777-G-GAGGAA | ** | |||||||
3594008-C-A | 3725967-C-A | ** | |||||||
4172384-C-A | 4304343-C-A | ** | |||||||
15557063-G-A | 13445183-G-A | ** | |||||||
7775675-C-A | 7907634-C-A | ** | |||||||
13493298-C-A | 11337622-C-A | ** | |||||||
10778499-G-T | ** | ||||||||
16604909-C-A | 14493029-C-A | ** | |||||||
10973878-C-A | ** | ||||||||
14449657-C-A | 12328930-C-A | ** | |||||||
22965821-C-A | 20803935-C-A | ** | |||||||
26262370-G-T | 24116223-G-T | P1_Y1 | ** | ||||||
10821933-A-G | ** | ||||||||
10992422-C-A | ** | ||||||||
10790407-CCCCG-C | ** | ||||||||
16305899-T-G | 14194019-T-G | ** | |||||||
17071190-CGAAA-C | 14959310-CGAAA-C | 6×GAAA | ** | ||||||
18959212-CTCA-C | 16847332-CTCA-C | ** | |||||||
23807555-T-G | 21645669-T-G | ** | |||||||
5186716-G-T | 5318675-G-T | ** | |||||||
2928493-C-A | 3060452-C-A | ** | |||||||
10790393-CCAATCCCTTCT-C | ** | ||||||||
10790416-A-T | ** | ||||||||
10792784-A-ATTTCT | ** | ||||||||
10790420-A-T | ** | ||||||||
10790447-CCCACTCC-T | ** | ||||||||
10866207-A-C | ** | ||||||||
3849441-C-A | 3981400-C-A | ** | |||||||
13461053-A-T | 11305377-A-T | ** | |||||||
13461080-A-T | 11305404-A-T | ** | |||||||
16505169-C-A | 14393289-C-A | ** | |||||||
10767693-T-C | ** | ||||||||
21561547-CA-C | 19399661-CA-C | 9×A | ** | ||||||
21555238-CTTTT-C | 19393352-CTTTT-C | 15×T | ** | ||||||
17201762-C-T | 15089882-C-T | 16×T | ** | ||||||
17319971-G-GAGAAAGAAAGAA | 15208091-G-GAGAAAGAAAGAA | 13×AGAA | ** | ||||||
14977328-C-A | 12865403-C-A | ** | ** | ||||||
15969955-AT-A | 13858075-AT-A | ** | |||||||
18443597-A-G | 16331717-A-G | P6_Dst | ** | ||||||
4179019-AT-A | 4310978-AT-A | ** | |||||||
9516751-C-T | 9679142-C-T | 14×T | ** | ||||||
15279232-A-G | 13167331-A-G | ** | |||||||
18596137-T-C | 16484257-T-C | Y3139 FGC13365 | ** | ||||||
17923865-G-T | 15811985-G-T | ** | |||||||
24022786-C-A | 21876639-C-A | ** | |||||||
24595412-A-T | 22449265-A-T | P3_t2 | ** | ||||||
18965640-G-T | 16853760-G-T | ** | |||||||
20641604-TGAGAGA-T | 18479718-TGAGAGA-T | P4_Prx | 16×GA | ** | |||||
13223476-A-G | 11067800-A-G | ** | |||||||
24595356-CTTT-C | 22449209-CTTT-C | P3_t2 | 26×T | ** | |||||
7165301-G-T | 7297260-G-T | ** | |||||||
21541425-G-T | 19379539-G-T | FGC64985 | ** | ||||||
14402455-A-G | 12281752-A-G | ** | |||||||
8663598-C-A | 8795557-C-A | ** | |||||||
10821886-C-T | ** | ||||||||
17170201-A-T | 15058321-A-T | ** | |||||||
2758146-C-A | 2890105-C-A | ** | |||||||
22598228-C-A | 20436342-C-A | ** | |||||||
4873755-C-A | 5005714-C-A | ** | |||||||
28745027-C-A | 26598880-C-A | ** | |||||||
8134771-C-A | 8266730-C-A | ** | |||||||
22801880-C-A | 20639994-C-A | ** | |||||||
3367102-C-A | 3499061-C-A | ** | |||||||
22614358-C-A | 20452472-C-A | ** | |||||||
14712630-G-T | 12600697-G-T | ** | |||||||
9601588-T-TA | 9763979-T-TA | IR3_Prx | ** | ||||||
18401335-C-A | 16289455-C-A | P6_Gap | ** | ||||||
23807561-A-C | 21645675-A-C | ** | |||||||
28549873-G-T | 26403726-G-T | ** | |||||||
27607876-G-T | 25461729-G-T | P1_Y2 | ** | ||||||
27914949-T-A | 25768802-T-A | P1_Y2 | ** | ||||||
10994151-A-C | ** | ||||||||
10821874-C-CTCGAT | ** | ||||||||
23190043-G-T | 21028157-G-T | ** | |||||||
10961474-C-T | ** | ||||||||
10821943-A-T | ** | ||||||||
11014575-G-T | ** | ||||||||
22914441-C-A | 20752555-C-A | ** | |||||||
17547554-C-A | 15435674-C-A | ** | |||||||
21663244-C-A | 19501358-C-A | ** | |||||||
7939528-C-A | 8071487-C-A | ** | |||||||
28732922-C-A | 26586775-C-A | ** | |||||||
10792773-C-CATGCT | ** | ||||||||
10792780-T-G | ** | ||||||||
14781035-C-A | 12669105-C-A | ** | |||||||
14000478-C-A | 11879772-C-A | ** | |||||||
23801701-C-A | 21639815-C-A | ** | |||||||
15264753-G-T | 13152842-G-T | ** | |||||||
7470634-T-A | 7602593-T-A | IR1_L | ** | ||||||
11036132-C-T | ** | ||||||||
10984385-T-C | ** | ||||||||
20840321-C-A | 18678435-C-A | P4_Gap | ** | ||||||
14071484-C-A | 11950778-C-A | ** | |||||||
10929989-T-C | ** | ||||||||
13488872-C-G | 11333196-C-G | ** | |||||||
21583977-C-A | 19422091-C-A | ** | |||||||
16056221-C-A | 13944341-C-A | ** | |||||||
4138944-G-T | 4270903-G-T | ** | |||||||
6981175-G-A | 7113134-G-A | ** | |||||||
7019245-C-A | 7151204-C-A | ** | |||||||
5170222-A-C | 5302181-A-C | ** | |||||||
7082636-C-A | 7214595-C-A | ** | |||||||
4957956-A-G | 5089915-A-G | ** | |||||||
7094258-T-C | 7226217-T-C | ** | |||||||
4929969-TA-T | 5061928-TA-T | ** | |||||||
4929012-C-A | 5060971-C-A | ** | |||||||
4889778-T-C | 5021737-T-C | ** | |||||||
7101099-G-A | 7233058-G-A | ** | |||||||
4740583-A-C | 4872542-A-C | ** | |||||||
4521617-A-AG | 4653576-A-AG | ** | |||||||
4474562-G-A | 4606521-G-A | FGC40749 | ** | ||||||
4357848-G-C | 4489807-G-C | ** | |||||||
4063848-C-T | 4195807-C-T | ** | |||||||
5294101-T-G | 5426060-T-G | ** | |||||||
7101499-C-A | 7233458-C-A | ** | |||||||
3814639-C-T | 3946598-C-T | ** | |||||||
3744318-C-A | 3876277-C-A | ** | |||||||
3627847-C-A | 3759806-C-A | ** | |||||||
3593343-A-G | 3725302-A-G | ** | |||||||
3467236-A-G | 3599195-A-G | ** | |||||||
7106335-C-T | 7238294-C-T | ** | |||||||
3427069-G-A | 3559028-G-A | ** | |||||||
3413726-T-G | 3545685-T-G | ** | |||||||
3385537-A-T | 3517496-A-T | ** | |||||||
3274206-T-A | 3406165-T-A | ** | |||||||
3202857-G-A | 3334816-G-A | ** | |||||||
6981152-T-G | 7113111-T-G | FT148783 | ** | ||||||
2938573-T-C | 3070532-T-C | ** | |||||||
5204584-C-A | 5336543-C-A | ** | |||||||
5335775-C-A | 5467734-C-A | ** | |||||||
7106346-C-G | 7238305-C-G | ** | |||||||
6631355-G-A | 6763314-G-A | ** | |||||||
6948253-C-T | 7080212-C-T | ** | |||||||
6948246-A-G | 7080205-A-G | ** | |||||||
6925647-C-A | 7057606-C-A | ** | |||||||
6922430-A-T | 7054389-A-T | ** | |||||||
6891873-C-A | 7023832-C-A | ** | |||||||
7983168-C-A | 8115127-C-A | ** | |||||||
6881209-C-A | 7013168-C-A | ** | |||||||
6847927-C-A | 6979886-C-A | ** | |||||||
6981154-G-A | 7113113-G-A | ** | |||||||
6981156-G-A | 7113115-G-A | ** | |||||||
6792463-C-A | 6924422-C-A | ** | |||||||
6791343-C-A | 6923302-C-A | ** | |||||||
6651875-C-A | 6783834-C-A | ** | |||||||
6981163-C-T | 7113122-C-T | Y83087 | ** | ||||||
6434897-C-A | 6566856-C-A | ** | |||||||
5412188-C-A | 5544147-C-A | ** | |||||||
6152785-A-G | 6284744-A-G | IR3_Dst | ** | ||||||
6147480-C-A | 6279439-C-A | IR3_Dst | ** | ||||||
6146287-A-T | 6278246-A-T | IR3_Dst | ** | ||||||
6012823-T-C | 6144782-T-C | ** | |||||||
5870141-A-T | 6002100-A-T | ** | |||||||
5870039-A-T | 6001998-A-T | ** | |||||||
5870001-A-G | 6001960-A-G | ** | |||||||
5864080-C-A | 5996039-C-A | ** | |||||||
5852775-C-A | 5984734-C-A | ** | |||||||
5727861-C-A | 5859820-C-A | ** | |||||||
7970955-C-A | 8102914-C-A | ** | |||||||
5678211-G-T | 5810170-G-T | ** | |||||||
5576829-C-G | 5708788-C-G | FT1242 | ** | ||||||
5562683-A-T | 5694642-A-T | ** | |||||||
2929050-A-C | 3061009-A-C | ** | |||||||
3061060-C-G | 3193019-C-G | ** | |||||||
2923611-G-T | 3055570-G-T | ** | |||||||
7506097-G-T | 7638056-G-T | IR1_L | ** | ||||||
8025093-G-T | 8157052-G-T | ** | |||||||
7608474-T-C | 7740433-T-C | ** | |||||||
9702956-C-A | 9865347-C-A | IR3_Prx | ** | ||||||
2876844-G-T | 3008803-G-T | ** | |||||||
9926736-G-A | 10089127-G-A | ** | |||||||
16090216-C-A | 13978336-C-A | ** | |||||||
7722945-C-A | 7854904-C-A | ** | |||||||
7705540-C-T | 7837499-C-T | ** | |||||||
7307615-C-A | 7439574-C-A | ** | |||||||
13454761-C-A | 11299085-C-A | ** | |||||||
8030154-C-A | 8162113-C-A | ** | |||||||
7448416-G-T | 7580375-G-T | IR1_L | ** | ||||||
7701503-T-A | 7833462-T-A | ** | |||||||
14898403-GT-G | 12786469-GT-G | 9×T | ** | ||||||
2752685-C-A | 2884644-C-A | ** | |||||||
7623467-A-G | 7755426-A-G | ** | |||||||
10943129-C-T | ** | ||||||||
17753811-C-A | 15641931-C-A | ** | |||||||
14819778-C-A | 12707845-C-A | ** | |||||||
10654694-G-T | ** | ||||||||
7623470-A-G | 7755429-A-G | ** | |||||||
13411005-C-A | 11255329-C-A | ** | |||||||
10625705-C-A | ** | ||||||||
10003661-A-G | 10166052-A-G | ** | |||||||
8119072-C-A | 8251031-C-A | ** | |||||||
8379746-T-C | 8511705-T-C | ** | |||||||
28773682-C-A | 26627535-C-A | ** | |||||||
28468798-C-A | 26322651-C-A | ** | |||||||
7896883-T-C | 8028842-T-C | ** | |||||||
10815725-G-C | ** | ||||||||
6981136-A-G | 7113095-A-G | ** | |||||||
2762228-T-G | 2894187-T-G | ** | |||||||
2809215-T-C | 2941174-T-C | ** | |||||||
2799586-G-A | 2931545-G-A | ** | |||||||
2775170-G-T | 2907129-G-T | ** | |||||||
7221635-C-A | 7353594-C-A | ** | |||||||
7925845-G-GT | 8057804-G-GT | ** | |||||||
7253865-C-A | 7385824-C-A | ** | |||||||
7269653-A-G | 7401612-A-G | ** | |||||||
2766730-A-T | 2898689-A-T | ** | |||||||
7991429-T-C | 8123388-T-C | ** | |||||||
8002109-G-A | 8134068-G-A | ** | |||||||
2832613-A-C | 2964572-A-C | ** | |||||||
2762216-G-A | 2894175-G-A | ** | |||||||
7188535-C-A | 7320494-C-A | ** | |||||||
2843123-T-C | 2975082-T-C | ** | |||||||
2762133-C-A | 2894092-C-A | ** | |||||||
7106356-T-C | 7238315-T-C | ** | |||||||
7106348-C-T | 7238307-C-T | ** | |||||||
13858765-G-A | 11738059-G-A | *** | |||||||
2809578-G-T | 2941537-G-T | *** | |||||||
22870546-C-A | 20708660-C-A | *** | |||||||
23281389-C-A | 21119503-C-A | *** | |||||||
7701244-C-A | 7833203-C-A | *** | |||||||
9880184-G-T | 10042575-G-T | *** | |||||||
9730543-G-T | 9892934-G-T | IR3_Prx | *** | ||||||
23259489-C-A | 21097603-C-A | *** | |||||||
7918686-C-A | 8050645-C-A | *** | |||||||
23232218-C-T | 21070332-C-T | *** | |||||||
13858749-G-T | 11738043-G-T | *** | |||||||
22833971-T-A | 20672085-T-A | *** | |||||||
19060766-C-A | 16948886-C-A | *** | |||||||
22917723-C-A | 20755837-C-A | *** | |||||||
9994774-A-G | 10157165-A-G | F10490 | *** | ||||||
23003575-C-A | 20841689-C-A | *** | |||||||
22978954-C-A | 20817068-C-A | *** | |||||||
14485171-G-T | 12364440-G-T | *** | |||||||
8817412-C-A | 8949371-C-A | *** | |||||||
8835351-CT-C | 8967310-CT-C | 8×T | *** | ||||||
13802810-A-G | 11682104-A-G | *** | |||||||
7775964-G-C | 7907923-G-C | *** | |||||||
13866809-CGG-C,CGA | 11746103-CGG-C,CGA | *** | |||||||
15670980-G-A | 13559100-G-A | *** | |||||||
14286823-T-G | 12166117-T-G | *** | |||||||
23555024-C-A | 21393138-C-A | *** | |||||||
10050546-T-G | 10212937-T-G | *** | |||||||
13480755-A-G | 11325079-A-G | *** | |||||||
24472623-T-C | 22326476-T-C | *** | |||||||
18162911-G-T | 16051031-G-T | *** | |||||||
24517842-C-A | 22371695-C-A | *** | |||||||
10050580-A-C | 10212971-A-C | *** | |||||||
10050565-C-A | 10212956-C-A | *** | |||||||
8661513-C-A | 8793472-C-A | *** | |||||||
4302690-C-A | 4434649-C-A | *** | |||||||
8599722-C-A | 8731681-C-A | *** | |||||||
13804078-T-A | 11683372-T-A | *** | |||||||
14159518-G-A | 12038812-G-A | BY39911 | FGC10179 | *** | |||||
13480745-T-C | 11325069-T-C | *** | |||||||
24434680-C-A | 22288533-C-A | *** | |||||||
28559368-T-C | 26413221-T-C | *** | |||||||
28605497-A-T | 26459350-A-T | *** | |||||||
13480737-C-A | 11325061-C-A | *** | |||||||
10021636-G-C | 10184027-G-C | *** | |||||||
13819552-G-C | 11698846-G-C | *** | |||||||
13819545-A-AT | 11698839-A-AT | *** | |||||||
13819541-TA-T | 11698835-TA-T | *** | |||||||
10021628-C-A | 10184019-C-A | *** | |||||||
8108356-CAA-C,CA | 8240315-CAA-C,CA | 15×A | *** | ||||||
56828919-CATGTC-C,CATGCT | *** | ||||||||
18083835-C-A | 15971955-C-A | Z16433 | Z16433 | *** | |||||
24423214-CAT-C | 22277067-CAT-C | *** | |||||||
24434623-C-A | 22288476-C-A | *** | |||||||
23411845-A-G | 21249959-A-G | *** | |||||||
13478275-C-G | 11322599-C-G | *** | |||||||
23412321-G-A | 21250435-G-A | *** | |||||||
8784872-G-T | 8916831-G-T | *** | |||||||
13847205-A-AAAGAT | 11726499-A-AAAGAT | *** | |||||||
13847199-G-T | 11726493-G-T | *** | |||||||
13847196-A-G | 11726490-A-G | *** | |||||||
8737150-C-A | 8869109-C-A | *** | |||||||
13847243-G-T | 11726537-G-T | *** | |||||||
22508059-T-A | 20346173-T-A | DYZ19 | *** | ||||||
23527014-C-A | 21365128-C-A | *** | |||||||
23541408-CAAA-C | 21379522-CAAA-C | 17×A | *** | ||||||
7987773-C-CT | 8119732-C-CT | 9×T | *** | ||||||
23557833-C-A | 21395947-C-A | *** | |||||||
13831942-G-T | 11711236-G-T | BY39693 | *** | ||||||
7988099-CTTT-C | 8120058-CTTT-C | 14×T | *** | ||||||
8735128-G-T | 8867087-G-T | *** | |||||||
18185006-G-T | 16073126-G-T | *** | *** | ||||||
8715340-T-C | 8847299-T-C | *** | |||||||
28784635-G-A | 26638488-G-A | *** | |||||||
23963915-C-A | 21817768-C-A | *** | |||||||
23963916-A-G | 21817769-A-G | *** | |||||||
7987783-A-G | 8119742-A-G | *** | |||||||
17662183-A-G | 15550303-A-G | *** | |||||||
10050555-C-A | 10212946-C-A | *** | |||||||
8459392-ATTAT-A | 8591351-ATTAT-A | 6×TTAT | *** | ||||||
22138249-T-A | 19976363-T-A | *** | |||||||
8042534-C-A | 8174493-C-A | *** | |||||||
9880217-G-T | 10042608-G-T | *** | |||||||
13457453-A-T | 11301777-A-T | *** | |||||||
15778123-C-A | 13666243-C-A | *** | |||||||
15786423-T-A | 13674543-T-A | *** | |||||||
15860637-C-A | 13748757-C-A | *** | |||||||
15895322-C-A | 13783442-C-A | *** | |||||||
15904440-C-A | 13792560-C-A | *** | |||||||
15975677-G-T | 13863797-G-T | *** | |||||||
13457825-C-A | 11302149-C-A | *** | |||||||
13457480-A-C | 11301804-A-C | *** | |||||||
17574856-C-A | 15462976-C-A | *** | |||||||
56825740-CATATATATATAT-C,CAT | 12×AT | *** | |||||||
8151724-G-A | 8283683-G-A | *** | |||||||
13417304-C-A | 11261628-C-A | *** | |||||||
16361717-C-A | 14249837-C-A | *** | |||||||
2970218-C-A | 3102177-C-A | *** | |||||||
16888589-C-A | 14776709-C-A | *** | |||||||
16955742-C-A | 14843862-C-A | *** | |||||||
56832012-C-CCACTG | *** | ||||||||
21235211-C-A | 19073325-C-A | *** | |||||||
4770376-A-C | 4902335-A-C | *** | |||||||
11663331-C-A | *** | ||||||||
15658859-A-G | 13546979-A-G | *** | |||||||
4961352-G-T | 5093311-G-T | FT75076 | *** | ||||||
14416342-C-A | 12295639-C-A | *** | |||||||
14552175-TAAA-T,TAA | 12440376-TAAA-T,TAA | 13×A | *** | ||||||
14840899-C-A | 12728966-C-A | *** | |||||||
17054890-T-C | 14943010-T-C | *** | |||||||
14953234-C-T | 12841308-C-T | *** | |||||||
9454024-GT-G | 9616415-GT-G | 9×T | *** | ||||||
15041315-C-A | 12929405-C-A | *** | |||||||
15055072-A-G | 12943163-A-G | *** | |||||||
15056816-TA-T | 12944908-TA-T | *** | |||||||
14599917-C-A | 12488117-C-A | *** | |||||||
14298180-A-C | 12177474-A-C | *** | |||||||
15652781-A-C | 13540901-A-C | *** | |||||||
15251768-C-A | 13139854-C-A | *** | |||||||
15335077-A-G | 13223195-A-G | *** | |||||||
15336663-A-G | 13224781-A-G | *** | |||||||
56832825-ACTCCA-G | *** | ||||||||
15418627-C-A | 13306747-C-A | *** | |||||||
14078942-T-C | 11958236-T-C | *** | |||||||
23745129-G-T | 21583243-G-T | *** | |||||||
15565367-A-G | 13453487-A-G | *** | |||||||
2761547-A-G | 2893506-A-G | *** | |||||||
17657564-C-A | 15545684-C-A | *** | |||||||
17708372-C-A | 15596492-C-A | *** | |||||||
21986624-T-C | 19824738-T-C | *** | |||||||
10012889-A-C | 10175280-A-C | *** | |||||||
13845494-T-C | 11724788-T-C | FTA43195 | *** | ||||||
21087397-T-A | 18925511-T-A | Y105395 | *** | ||||||
7228119-C-A | 7360078-C-A | *** | |||||||
7308674-T-C | 7440633-T-C | *** | |||||||
21201065-C-A | 19039179-C-A | *** | |||||||
21212107-G-C | 19050221-G-C | *** | |||||||
7314775-C-A | 7446734-C-A | *** | |||||||
21262388-T-A | 19100502-T-A | *** | |||||||
10016240-C-A | 10178631-C-A | *** | |||||||
21428793-T-C | 19266907-T-C | *** | |||||||
7200260-C-A | 7332219-C-A | *** | |||||||
7365452-C-A | 7497411-C-A | *** | |||||||
21489262-C-A | 19327376-C-A | *** | |||||||
21505198-T-C | 19343312-T-C | *** | |||||||
7415580-T-A | 7547539-T-A | *** | |||||||
21560584-C-A | 19398698-C-A | *** | |||||||
9972534-C-A | 10134925-C-A | *** | |||||||
9900320-G-A | 10062711-G-A | *** | |||||||
9880223-G-T | 10042614-G-T | *** | |||||||
21961552-T-C | 19799666-T-C | *** | |||||||
21052705-C-CT | 18890819-C-CT | 9×T | *** | ||||||
13521039-GAT-G,GATAT | 11365363-GAT-G,GATAT | 10×AT | *** | ||||||
17708383-T-A | 15596503-T-A | *** | |||||||
18816752-G-A | 16704872-G-A | *** | |||||||
17924736-C-A | 15812856-C-A | *** | |||||||
17941747-T-C | 15829867-T-C | *** | |||||||
20001304-G-A | 17889424-G-A | P5_Prx | *** | ||||||
6458211-C-A | 6590170-C-A | *** | |||||||
6644734-A-T | 6776693-A-T | *** | |||||||
15064857-A-AT | 12952949-A-AT | 9×T | *** | ||||||
18740689-C-A | 16628809-C-A | *** | |||||||
18785279-T-C | 16673399-T-C | *** | |||||||
6828055-G-A | 6960014-G-A | *** | |||||||
18891729-A-G | 16779849-A-G | *** | |||||||
19529757-A-T | 17417877-A-T | *** | |||||||
19049463-C-A | 16937583-C-A | *** | |||||||
14621616-C-A | 12509814-C-A | *** | |||||||
19134109-C-A | 17022229-C-A | *** | |||||||
19302745-T-A | 17190865-T-A | *** | |||||||
19320384-T-C | 17208504-T-C | *** | |||||||
11652843-T-A | *** | ||||||||
11652838-T-C | *** | ||||||||
16458133-C-A | 14346253-C-A | *** | |||||||
19527293-G-A | 17415413-G-A | *** | |||||||
13820848-C-G | 11700142-C-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 30225 | 10212459 | 7340556 | 7406428 |
Kit: 30225 | 8910993 | 7297000 | 7237714 |
Used in age calculations | 10212459 | 7340556 | 7406428 |
Counts of SNPs | 4 | 2 |
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