Donahue

FTDNA: B99579, BigY2: B99579
MDKA Birth: Ireland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > BY4086 > FGC17436 > Z17693 > FGC73657 > A505 > S7897 > A495

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B99579		BigY2
B99579
10683616-A-C A+
10683654-C-A A+
10683655-C-A A+
10683657-C-T A+
10683665-C-T A+
10683680-C-A A+
19811360-C-T 17699480-C-T P5_Prx ***A*
22304641-G-A 20142755-G-A DYZ19 ***A*
8568465-G-T 8700424-G-T BY48367 YY22×T++
22473642-G-C 20311756-G-C BY21255 DYZ19 +
22475824-G-A 20313938-G-A BY223436 DYZ19 ***+
18028728-C-T 15916848-C-T BY23441BY24103 Y++
2690084-T-C 2822043-T-C BY55812 YY++
7526502-G-T 7658461-G-T BY65649 YY++
9437903-G-A 9600294-G-A BY79395 YY++
13668751-G-A 11513075-G-A FGC56983 DYZ17 ++
13816825-A-C 11696119-A-C BY90430 DYZ17 ++
15764702-A-G 13652822-A-G BY103915 YY++
15765599-T-C 13653719-T-C BY103932 YY++
18236103-T-C 16124223-T-C BY121077 Y++
19115029-A-G 17003149-A-G BY126395 YY++
19298916-A-C 17187036-A-C BY128058 Y**+
19445984-T-A 17334104-T-A BY129106 YY++
22010092-G-T 19848206-G-T BY137074 YY++
22086307-A-G 19924421-A-G Y108351 YY++
22472342-T-G 20310456-T-G A2047 DYZ19 +**
24519465-C-T 22373318-C-T A5972 ++
22237727-T-A 20075841-T-A DYZ19 ****
8491157-A-AC 8623116-A-AC 9×C****
15558491-TAGATAGAT-T,TAGACAGAC 13446611-TAGATAGAT-T,TAGACAGAC *
13719258-A-T 11563582-A-T DYZ17 *
13719258-AG-A 11563582-AG-A DYZ17 *
13223639-AGAGG-A 11067963-AGAGG-A **
22473503-C-T 20311617-C-T FGC1728 DYZ19 **
18687704-CAAA-C 16575824-CAAA-C 14×A**
25173622-G-A 23027475-G-A BY184332 g1 **
22472328-C-A 20310442-C-A BY202408A2045 DYZ19 ****
6768884-G-T 6900843-G-T **
27792016-A-T 25645869-A-T P1_Y2 **
20326069-G-T 18164183-G-T P5_Dst **
20340166-A-G 18178280-A-G P5_Dst **
27585939-G-T 25439792-G-T P1_Y2 **
6786909-A-T 6918868-A-T **
6768879-C-G 6900838-C-G **
22486304-T-G 20324418-T-G DYZ19 **
26376486-C-A 24230339-C-A P1_Y1 **
22472332-A-G 20310446-A-G BY202408A2046 DYZ19 ****
22475774-A-C 20313888-A-C DYZ19 **
14589365-C-T 12477565-C-T **
11022033-C-T **
2773691-T-TAA 2905650-T-TAA 19×A**
13464-T-C **
14538713-C-A 12426914-C-A **
21464513-C-A 19302627-C-A **
19183847-G-A 17071967-G-A **
4302830-G-T 4434789-G-T FT402872 **
10841089-C-T **
15940305-TCA-T 13828425-TCA-T **
13465-G-A **
10808960-T-C **
10808976-C-G **
10808986-T-TCCGCA **
10808993-C-A **
13926903-T-C 11806197-T-C **
5022028-T-C 5153987-T-C **
10971240-C-A **
10989141-C-T **
56830267-C-T **
56830278-C-T **
10008116-C-A 10170507-C-A **
7256114-A-G 7388073-A-G **
19732412-C-CG 17620532-C-CG P5_Prx **
14424019-G-T 12303294-G-T **
9956357-C-A 10118748-C-A **
15964642-CTTT-C 13852762-CTTT-C 14×T**
10828177-C-CGGATG **
10954378-C-A **
10850552-GTCCATTCCAT-G **
5022023-AG-A 5153982-AG-A **
10841084-C-T **
10841088-A-T **
10841101-C-A **
17122279-G-A 15010399-G-A **
3535949-A-G 3667908-A-G **
10939602-C-T **
10796110-T-A **
10796128-G-C **
10796133-G-A **
10796134-T-C **
10796140-T-A **
10760465-A-T **
10760470-T-A **
10760471-A-T **
10760482-G-C **
10760484-A-C **
10760487-C-A **
10760488-T-G **
21408322-C-A 19246436-C-A **
21979946-T-A 19818060-T-A **
27417741-T-A 25271594-T-A P1_g3 **
16172228-G-T 14060348-G-T **
10988855-TATTCC-T **
23204510-C-A 21042624-C-A **
8389597-G-A 8521556-G-A **
18645961-C-A 16534081-C-A **
10797906-A-T **
10760459-A-G **
10760340-C-CACTCT **
10669544-C-G **
19745021-A-T 17633141-A-T P5_Prx **
15936718-C-A 13824838-C-A **
7237275-G-GA 7369234-G-GA 9×A**
8690237-TGA-T 8822196-TGA-T **
8216423-G-TT 8348382-G-TT **
11034940-C-G **
13461087-C-G 11305411-C-G **
8167885-C-A 8299844-C-A **
28687863-G-T 26541716-G-T **
18972852-G-T 16860972-G-T **
15370262-G-T 13258382-G-T **
27647569-C-A 25501422-C-A P1_Y2 **
10828163-A-T **
10828176-C-A **
10797892-T-C **
27546766-C-G 25400619-C-G P1_Y2 **
6901107-C-A 7033066-C-A **
13445179-C-A 11289503-C-A **
11022024-T-G **
14743147-T-A 12631215-T-A **
10797976-A-C **
10926550-C-G **
10926560-T-G **
10943300-C-A **
10796927-C-T **
21212243-C-A 19050357-C-A **
5577233-C-A 5709192-C-A **
56830287-C-CCTTTA **
56830293-C-A **
10970656-TCACTC-T **
7256112-T-G 7388071-T-G **
28759544-C-A 26613397-C-A **
6352004-A-G 6483963-A-G **
15698535-C-A 13586655-C-A **
56830309-A-G **
15700379-C-A 13588499-C-A **
17804437-C-A 15692557-C-A **
15642834-C-A 13530954-C-A **
9996031-C-A 10158422-C-A **
16427332-C-A 14315452-C-A **
10776840-C-A **
10885391-T-C **
10885396-C-T **
10885423-T-C **
10885428-C-G **
13872777-C-A 11752071-C-A **
5606696-A-C 5738655-A-C **
14352924-C-A 12232219-C-A **
26170415-T-A 24024268-T-A P1_Y1 **
14076142-G-A 11955436-G-A **
10883751-C-T **
28772936-C-A 26626789-C-A **
10929258-G-T **
28632728-C-T 26486581-C-T **
11011462-ACATTC-A **
10889786-A-C **
3990662-C-A 4122621-C-A **
9426729-C-A 9589120-C-A **
23848632-G-T 21686746-G-T **
19252944-G-T 17141064-G-T **
3626433-T-A 3758392-T-A **
9075897-C-A 9238288-C-A **
13898821-G-T 11778115-G-T **
13898785-G-T 11778079-G-T **
11022023-C-T **
9830883-C-A 9993274-C-A **
10797970-C-T **
15402957-C-A 13291077-C-A **
21858256-T-A 19696370-T-A **
11664440-C-A DYZ17 **
7020259-C-A 7152218-C-A **
4679297-A-G 4811256-A-G **
18050625-C-A 15938745-C-A **
10685743-A-G FT91561 **
19252922-G-T 17141042-G-T **
10985193-C-A **
10797992-C-A **
10889775-C-T **
10889802-T-G **
19202848-C-A 17090968-C-A **
10865775-T-C **
6280425-G-A 6412384-G-A IR3_Dst 9×A**
27570915-G-T 25424768-G-T P1_Y2 **
10846661-C-A **
5022039-T-A 5153998-T-A **
11657352-CGAATG-C DYZ17 **
22615204-C-A 20453318-C-A **
23205345-A-G 21043459-A-G **
19677906-C-G 17566026-C-G P5_Prx **
15109819-C-A 12997906-C-A **
6280433-A-G 6412392-A-G IR3_Dst **
27570919-C-T 25424772-C-T P1_Y2 **
10828171-C-A **
14495724-C-A 12383921-C-A **
5412029-C-A 5543988-C-A **
21754424-G-T **
19375510-A-C 17263630-A-C **
3853678-A-T 3985637-A-T **
27398407-T-A 25252260-T-A P1_g3 **
19391114-TTTG-T 17279234-TTTG-T **
2758832-G-A 2890791-G-A **
27917661-G-A 25771514-G-A P1_Y2 **
19047873-C-A 16935993-C-A FT347918 **
15686939-C-A 13575059-C-A **
16437969-C-A 14326089-C-A **
7105160-C-A 7237119-C-A **
16904585-C-A 14792705-C-A **
23439143-C-A 21277257-C-A **
10797952-T-G **
10797960-C-CTCTCT **
10798010-C-T **
19793879-T-TC 17681999-T-TC P5_Prx **
10669547-T-A **
15198730-T-A 13086816-T-A **
10760340-C-A **
14068461-C-T 11947755-C-T **
23277076-AT-A 21115190-AT-A 9×T**
14352940-C-A 12232235-C-A **
16309536-C-A 14197656-C-A **
21875802-T-C 19713916-T-C **
13229522-C-A 11073846-C-A FT230008 **
16309550-C-A 14197670-C-A **
8274111-C-A 8406070-C-A **
19546103-C-A 17434223-C-A **
2649700-G-A 2781659-G-A **
2682313-C-A 2814272-C-A **
2682370-T-A 2814329-T-A **
2752627-G-A 2884586-G-A **
3003193-C-A 3135152-C-A **
3016297-G-A 3148256-G-A **
3032977-G-C 3164936-G-C **
3051383-T-C 3183342-T-C **
3218427-G-C 3350386-G-C **
3252565-C-G 3384524-C-G **
3252876-C-A 3384835-C-A **
3368182-A-G 3500141-A-G **
3389860-T-A 3521819-T-A **
3853679-T-C 3985638-T-C **
3906562-T-A 4038521-T-A **
4053600-G-T 4185559-G-T **
4101077-T-C 4233036-T-C **
4229993-C-A 4361952-C-A **
4270861-C-G 4402820-C-G **
4509136-A-T 4641095-A-T **
4587550-T-C 4719509-T-C **
4601507-T-C 4733466-T-C **
4703027-G-A 4834986-G-A **
4703135-T-G 4835094-T-G **
4755766-A-G 4887725-A-G **
4787273-C-A 4919232-C-A **
4804518-A-T 4936477-A-T **
4863315-C-A 4995274-C-A **
4959434-A-G 5091393-A-G **
5094893-G-T 5226852-G-T **
5189174-A-G 5321133-A-G **
5202107-C-T 5334066-C-T **
5242316-T-C 5374275-T-C FT80566 **
5248726-C-T 5380685-C-T **
5428324-A-G 5560283-A-G **
5468015-G-C 5599974-G-C **
5502977-T-C 5634936-T-C **
5808418-A-C 5940377-A-C **
5808433-T-A 5940392-T-A **
5905811-A-G 6037770-A-G **
5969836-A-C 6101795-A-C **
6029042-G-A 6161001-G-A **
6086043-G-C 6218002-G-C **
6090842-T-A 6222801-T-A **
6245774-T-C 6377733-T-C IR3_Dst **
6280443-A-C 6412402-A-C IR3_Dst **
6365115-C-A 6497074-C-A **
6473204-C-A 6605163-C-A **
6473321-A-T 6605280-A-T **
6651778-TA-T 6783737-TA-T **
6732406-TGTTACGCAG-T 6864365-TGTTACGCAG-T **
6786904-C-T 6918863-C-T **
6888585-C-A 7020544-C-A **
6901080-C-T 7033039-C-T **
6929633-T-C 7061592-T-C **
7101169-C-G 7233128-C-G **
7183608-T-C 7315567-T-C **
7222190-T-A 7354149-T-A **
7228304-T-C 7360263-T-C **
7360445-G-C 7492404-G-C **
7375068-C-G 7507027-C-G FT174084 **
7443998-A-G 7575957-A-G **
7469551-C-A 7601510-C-A IR1_L **
7650440-C-T 7782399-C-T **
7896974-G-T 8028933-G-T **
8076717-A-G 8208676-A-G **
8167711-T-C 8299670-T-C **
8987689-A-C 9150080-A-C **
10617970-T-A FT427778 **
10647732-C-A **
10661086-C-T **
10673015-T-C **
10694116-A-C **
10784845-G-T **
10786489-T-A **
10792617-C-T FT431404 **
10797951-A-T **
10827851-G-T **
10858993-T-C **
10868070-A-T **
10889787-T-TTTGAG **
10916286-T-A **
10933640-C-T **
10959552-T-A **
10959571-C-T **
10967317-A-T **
10974850-T-C **
10985202-TCCA-T **
10985236-C-CCAT **
10987235-T-A **
10993997-C-A **
11002181-A-C **
11002187-C-T **
11038131-A-ATTTCG **
13229892-G-T 11074216-G-T **
13248585-C-T 11092909-C-T **
13313054-T-G 11157378-T-G **
13349496-C-A 11193820-C-A **
13474831-G-T 11319155-G-T **
13482873-T-C 11327197-T-C **
13487745-CCCA-C 11332069-CCCA-C **
13543172-T-G 11387496-T-G **
13614272-T-A 11458596-T-A **
13641037-T-G 11485361-T-G **
13705486-G-C 11549810-G-C DYZ17 **
13705496-G-GGGTTTCAT 11549820-G-GGGTTTCAT DYZ17 **
11644469-A-G DYZ17 **
11653392-G-A DYZ17 **
11672005-A-C DYZ17 **
13824670-C-A 11703964-C-A DYZ17 **
13828351-A-T 11707645-A-T DYZ17 **
13898827-C-T 11778121-C-T **
13945819-G-T 11825113-G-T **
13963424-G-A 11842718-G-A **
14220881-A-T 12100175-A-T **
14224421-C-A 12103715-C-A **
14313665-A-T 12192959-A-T **
14474487-T-A 12353756-T-A **
14495723-T-G 12383920-T-G **
14584517-G-C 12472717-G-C **
14683727-G-T 12571793-G-T **
14784781-C-T 12672851-C-T **
14994395-A-G 12882480-A-G **
15114724-AT-A 13002811-AT-A **
15117622-C-A 13005709-C-A **
15127180-G-T 13015267-G-T **
15172706-C-A 13060792-C-A **
15215962-A-C 13104048-A-C **
15280176-A-T 13168275-A-T **
15431615-A-G 13319735-A-G **
15490729-C-A 13378849-C-A **
15500663-T-G 13388783-T-G **
15565968-A-T 13454088-A-T **
15688397-T-C 13576517-T-C **
16047902-A-C 13936022-A-C **
16279039-C-T 14167159-C-T **
16413622-G-A 14301742-G-A FT175846 **
16666988-A-C 14555108-A-C **
16676569-T-C 14564689-T-C **
16701807-G-T 14589927-G-T FGC35119 **
16876797-C-G 14764917-C-G **
16905866-ATCTC-A 14793986-ATCTC-A **
17029151-T-C 14917271-T-C **
17093867-A-G 14981987-A-G **
17157549-A-T 15045669-A-T **
17165502-G-A 15053622-G-A **
17170307-A-G 15058427-A-G **
17307383-C-G 15195503-C-G **
17385417-A-T 15273537-A-T **
17605624-C-A 15493744-C-A **
17673161-A-G 15561281-A-G **
17741305-A-T 15629425-A-T **
17863461-G-T 15751581-G-T **
17882879-C-A 15770999-C-A **
17998676-G-A 15886796-G-A P7_Gap **
18093255-C-A 15981375-C-A **
18127938-T-A 16016058-T-A **
18128045-T-A 16016165-T-A **
18185135-A-G 16073255-A-G **
18564897-A-G 16453017-A-G **
18593504-A-G 16481624-A-G **
18726711-T-A 16614831-T-A **
18737497-T-A 16625617-T-A **
18837536-T-A 16725656-T-A **
19252928-A-T 17141048-A-T **
19252934-G-C 17141054-G-C **
19267285-A-C 17155405-A-C **
19337661-A-T 17225781-A-T **
19361264-T-A 17249384-T-A **
19375490-G-C 17263610-G-C **
19377435-GAAGGAAGA-G 17265555-GAAGGAAGA-G **
19411690-A-T 17299810-A-T **
19415350-G-A 17303470-G-A **
19522740-C-A 17410860-C-A **
19657987-T-TA 17546107-T-TA P5_Prx **
19677913-C-GT 17566033-C-GT P5_Prx **
19721244-G-T 17609364-G-T P5_Prx **
19721410-A-C 17609530-A-C P5_Prx **
19732322-G-T 17620442-G-T P5_Prx **
19849216-G-T 17737336-G-T P5_Prx **
20128362-G-T 18016482-G-T P5_Dst **
20712200-T-C 18550314-T-C P4_Prx **
20723342-T-C 18561456-T-C P4_Prx **
21012137-C-A 18850251-C-A P4_Dst **
21148422-C-A 18986536-C-A **
21211281-T-C 19049395-T-C 13×A**
21317014-C-A 19155128-C-A **
21323520-T-A 19161634-T-A **
21379977-C-A 19218091-C-A **
21775129-A-T 19613243-A-T **
21819923-T-G 19658037-T-G **
22060350-C-A 19898464-C-A **
22122227-C-G 19960341-C-G **
22260540-A-C 20098654-A-C DYZ19 **
22273538-A-AT 20111652-A-AT DYZ19 **
22447589-T-G 20285703-T-G DYZ19 **
22535960-A-G 20374074-A-G **
22855375-A-C 20693489-A-C **
22884256-T-C 20722370-T-C **
22963655-G-A 20801769-G-A **
23293654-A-G 21131768-A-G FT182685 **
23460558-C-G 21298672-C-G **
23491008-C-G 21329122-C-G **
23531724-C-T 21369838-C-T **
23952920-T-C 21806773-T-C **
24403465-G-T 22257318-G-T **
24449926-G-C 22303779-G-C **
25972278-A-G 23826131-A-G P1_Y1 **
25982580-A-AT 23836433-A-AT P1_Y1 **
26067514-T-TAA 23921367-T-TAA P1_Y1 **
26320718-G-T 24174571-G-T P1_Y1 **
27127899-G-C 24981752-G-C P1_g3 **
27398405-T-A 25252258-T-A P1_g3 **
27417745-C-T 25271598-C-T P1_g3 **
27546776-C-G 25400629-C-G P1_Y2 **
27647583-C-A 25501436-C-A P1_Y2 **
27791980-G-GCAT 25645833-G-GCAT P1_Y2 9×CTT**
27792057-T-A 25645910-T-A P1_Y2 **
28062445-A-T 25916298-A-T P1_Y2 **
28062607-A-T 25916460-A-T P1_Y2 **
28243494-A-G 26097347-A-G P1_b4 **
28532735-A-G 26386588-A-G FT158413 **
28544429-T-G 26398282-T-G **
28629600-T-G 26483453-T-G **
28629612-T-A 26483465-T-A **
28711991-T-C 26565844-T-C **
28711992-G-A 26565845-G-A **
28711996-G-C 26565849-G-C **
28712001-T-C 26565854-T-C **
28760196-C-T 26614049-C-T **
56837036-T-A **
13138016-C-A 10627502-C-A ***
13858572-A-C 11737866-A-C DYZ17 ***
58972900-C-T 56826753-C-T ***
13140547-T-A,C 10630033-T-A,C ***
19962147-C-T 17850267-C-T P5_Prx ***
22447982-T-G 20286096-T-G DYZ19 ***
22502410-G-C 20340524-G-C DYZ19 ***
24929196-A-T 22783049-A-T g1 ***
25012135-T-G 22865988-T-G g1 ***
25324392-G-C 23178245-G-C P2_r1 ***
22829644-CAAAA-C 20667758-CAAAA-C 18×A***
10807250-C-A ***
15969937-T-A 13858057-T-A ***
13461-C-T ***
4959568-C-A 5091527-C-A ***
10965613-CCATTC-C,CCATTA ***
14109316-CTT-C,CT 11988610-CTT-C,CT 14×T***
8019413-GA-G 8151372-GA-G 10×A***
17004633-G-A 14892753-G-A 9×A***
21773937-C-A 19612051-C-A ***
2686599-C-A 2818558-C-A ***
14394456-G-A 12273752-G-A ***
9852658-C-A 10015049-C-A ***
16288185-ATTTT-A 14176305-ATTTT-A 16×T***
8705695-A-T 8837654-A-T ***
10746940-T-C ***
10997469-C-A ***
13446671-A-C 11290995-A-C ***
10825693-A-T ***
15396751-C-A 13284871-C-A ***
13454696-C-A 11299020-C-A ***
27339704-G-T 25193557-G-T P1_g3 ***
14359923-GAAAA-G 12239218-GAAAA-G 14×A***
22489662-A-G 20327776-A-G DYZ19 ***
56833250-C-A ***
28798763-C-A 26652616-C-A ***
18793549-G-T 16681669-G-T ***
2763793-ACC-A,CC 2895752-ACC-A,CC ***
56834246-TCCG-T,TCCATTCCG ***
14541221-C-A 12429422-C-A ***
10661330-C-CCCATCCCATCCCATTCCATT ***
15911996-C-A 13800116-C-A ***
2960023-C-A 3091982-C-A ***
18570181-C-A 16458301-C-A ***
56836764-C-A ***
15427304-C-A 13315424-C-A ***
17014728-C-A 14902848-C-A ***
7605339-TA-T 7737298-TA-T 9×A***
15718104-C-A 13606224-C-A ***
14761540-C-A 12649609-C-A ***
6697239-C-A 6829198-C-A ***
7163426-C-G 7295385-C-G ***
7866990-C-A 7998949-C-A ***
8172687-CTTTTTTTTT-C 8304646-CTTTTTTTTT-C 22×T***
10825337-C-T ***
10852008-C-T ***
10978116-A-T ***
14464165-ATTTTT-A,AT 12343438-ATTTTT-A,AT 18×T***
14488394-C-CA 12367663-C-CA ***
14657665-G-A 12545730-G-A ***
15382784-A-T 13270904-A-T ***
16640097-C-A 14528217-C-A ***
17046249-A-T 14934369-A-T ***
17086044-GA-G 14974164-GA-G ***
17277937-A-G 15166057-A-G ***
18089069-A-T 15977189-A-T ***
19720732-TG-G,TT 17608852-TG-G,TT P5_Prx ***
21216923-C-A 19055037-C-A ***
21905298-AAGG-A,AGG 19743412-AAGG-A,AGG ***
22204211-C-A 20042325-C-A ***
22655247-T-A 20493361-T-A ***
22874622-A-G 20712736-A-G ***
23377559-A-G 21215673-A-G ***
24417115-A-G 22270968-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.